CompaRNA - on-line benchmarks of RNA structure prediction methods

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Metric	RNAwolf		NanoFolder
MCC	0.571	>	0.304
Average MCC ± 95% Confidence Intervals	0.591 ± 0.201	>	0.353 ± 0.351
Sensitivity	0.560	>	0.343
Positive Predictive Value	0.589	>	0.281
Total TP	93	>	57
Total TN	18871	>	18826
Total FP	75	<	159
Total FP CONTRA	13	<	22
Total FP INCONS	52	<	124
Total FP COMP	10	<	13
Total FN	73	<	109
P-value	0.0

Comparison of performance of RNAwolf and NanoFolder. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RNAwolf and NanoFolder).
Comparison of average Matthews Correlation Coefficients (MCCs) for RNAwolf and NanoFolder. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RNAwolf and NanoFolder).

Total Scores
MCC	0.571
Average MCC ± 95% Confidence Intervals	0.591 ± 0.201
Sensitivity	0.560
Positive Predictive Value	0.589
Nr of predictions	7

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
PDB_00571	tRNA links to Rfam database...	0.89	0.84	0.95	21	3299	2	1	0	1	4
PDB_00828	Purine links to Rfam database...	0.85	0.81	0.88	22	2460	3	1	2	0	5
PDB_00851	-	0.34	0.34	0.35	14	4713	26	0	26	0	27
PDB_01009	tRNA links to Rfam database...	0.45	0.52	0.39	11	2457	18	6	11	1	10
RFA_00770	Corona_pk3 links to Rfam database...	0.51	0.50	0.53	9	1999	12	2	6	4	9
RFA_00773	Corona_pk3 links to Rfam database...	0.42	0.39	0.47	7	1938	12	1	7	4	11
RFA_00808	RydC links to Rfam database...	0.68	0.56	0.82	9	2005	2	2	0	0	7

Total Scores
MCC	0.304
Average MCC ± 95% Confidence Intervals	0.353 ± 0.351
Sensitivity	0.343
Positive Predictive Value	0.281
Nr of predictions	7

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
PDB_00571	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3286	36	6	29	1	25
PDB_00828	Purine links to Rfam database...	0.30	0.33	0.28	9	2453	23	0	23	0	18
PDB_00851	-	0.16	0.17	0.17	7	4711	35	3	32	0	34
PDB_01009	tRNA links to Rfam database...	0.27	0.33	0.23	7	2455	25	3	20	2	14
RFA_00770	Corona_pk3 links to Rfam database...	-0.01	0.00	0.00	0	1996	24	0	20	4	18
RFA_00773	Corona_pk3 links to Rfam database...	0.93	1.00	0.86	18	1932	9	3	0	6	0
RFA_00808	RydC links to Rfam database...	0.83	1.00	0.70	16	1993	7	7	0	0	0

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.