CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Afold		RNASLOpt
MCC	0.500	>	0.467
Average MCC ± 95% Confidence Intervals	0.498 ± 0.021	>	0.463 ± 0.018
Sensitivity	0.493	>	0.434
Positive Predictive Value	0.509	>	0.503
Total TP	13086	>	11526
Total TN	15095991	<	15098807
Total FP	14316	>	12508
Total FP CONTRA	1846	>	1515
Total FP INCONS	10799	>	9874
Total FP COMP	1671	>	1119
Total FN	13454	<	15014
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Afold and RNASLOpt. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Afold and RNASLOpt).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Afold and RNASLOpt).
Comparison of average Matthews Correlation Coefficients (MCCs) for Afold and RNASLOpt. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Afold and RNASLOpt).

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Performance of Afold - scored higher in this pairwise comparison

1. Total counts & total scores for Afold

Total Base Pair Counts
Total TP	13086
Total TN	15095991
Total FP	14316
Total FP CONTRA	1846
Total FP INCONS	10799
Total FP COMP	1671
Total FN	13454

Total Scores
MCC	0.500
Average MCC ± 95% Confidence Intervals	0.498 ± 0.021
Sensitivity	0.493
Positive Predictive Value	0.509
Nr of predictions	275

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2. Individual counts for Afold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.75	0.72	0.78	54	34122	23	3	12	8	21
ASE_00002	RNaseP_arch links to Rfam database...	0.62	0.62	0.63	45	35439	33	4	23	6	28
ASE_00004	RNaseP_bact_a links to Rfam database...	0.51	0.52	0.51	50	47797	49	10	38	1	47
ASE_00005	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	66	57870	39	0	34	5	51
ASE_00006	RNaseP_bact_a links to Rfam database...	0.66	0.67	0.65	62	47491	36	7	26	3	31
ASE_00007	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	58	59586	45	1	40	4	52
ASE_00009	RNaseP_arch links to Rfam database...	0.79	0.76	0.82	51	26044	13	0	11	2	16
ASE_00012	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	48	73808	72	1	63	8	75
ASE_00014	RNaseP_arch links to Rfam database...	0.24	0.25	0.24	26	54178	82	8	73	1	80
ASE_00017	RNaseP_nuc links to Rfam database...	0.26	0.28	0.24	18	50965	74	6	51	17	46
ASE_00020	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	68	73807	46	6	39	1	58
ASE_00033	RNaseP_bact_a links to Rfam database...	0.33	0.31	0.36	38	64874	70	4	64	2	83
ASE_00036	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	52	75735	71	8	60	3	80
ASE_00037	RNaseP_bact_a links to Rfam database...	0.34	0.32	0.37	35	59245	63	0	60	3	75
ASE_00038	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	53	53529	48	4	42	2	48
ASE_00040	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	63	78883	63	5	52	6	70
ASE_00041	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	55	57530	51	2	43	6	53
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	74	54520	26	3	18	5	31
ASE_00046	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	57	50313	33	2	31	0	46
ASE_00047	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.43	50	74188	68	4	63	1	80
ASE_00053	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	69	79278	61	12	42	7	64
ASE_00056	-	0.34	0.35	0.34	25	30803	52	4	44	4	47
ASE_00064	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	38	45364	54	5	44	5	51
ASE_00066	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	71	72269	52	4	46	2	59
ASE_00068	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.36	27	37599	50	2	47	1	58
ASE_00074	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.50	56	67784	57	7	49	1	63
ASE_00076	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	64	68160	42	7	34	1	54
ASE_00077	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	44	45068	39	6	32	1	42
ASE_00078	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.67	56	42988	32	5	22	5	27
ASE_00079	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	48	55519	45	2	42	1	52
ASE_00080	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	59	71518	59	3	51	5	64
ASE_00081	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.46	44	49675	53	5	46	2	53
ASE_00082	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	63	70396	51	1	40	10	53
ASE_00083	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.76	74	62383	32	1	23	8	36
ASE_00084	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	70	53532	30	6	20	4	29
ASE_00089	-	0.39	0.37	0.41	29	31305	45	0	41	4	50
ASE_00090	RNaseP_bact_a links to Rfam database...	0.46	0.47	0.47	47	55510	59	6	48	5	54
ASE_00092	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	73	63444	35	3	26	6	40
ASE_00096	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	57	63439	51	2	48	1	58
ASE_00104	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	60	64153	49	8	40	1	59
ASE_00111	RNaseP_nuc links to Rfam database...	0.15	0.19	0.12	11	49992	89	31	52	6	46
ASE_00112	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	84	75364	25	5	13	7	32
ASE_00115	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	55	54517	51	1	42	8	46
ASE_00116	RNaseP_arch links to Rfam database...	0.24	0.24	0.23	16	31557	54	8	45	1	50
ASE_00118	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.39	39	60625	64	5	57	2	63
ASE_00119	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.67	65	62738	35	1	31	3	43
ASE_00120	RNaseP_arch links to Rfam database...	0.37	0.35	0.38	33	46885	53	9	44	0	61
ASE_00121	RNaseP_arch links to Rfam database...	0.29	0.29	0.29	27	45058	65	8	57	0	65
ASE_00122	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	24	43283	60	4	54	2	64
ASE_00123	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	36	38425	48	3	39	6	49
ASE_00125	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	55	39255	32	4	26	2	33
ASE_00126	RNaseP_bact_a links to Rfam database...	0.74	0.74	0.73	61	40387	27	3	19	5	21
ASE_00128	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.77	72	53207	30	2	20	8	28
ASE_00129	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.80	82	62732	26	3	18	5	29
ASE_00131	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.70	47	39273	31	0	20	11	38
ASE_00132	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.65	58	50314	34	7	24	3	37
ASE_00134	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	40	50313	54	7	43	4	55
ASE_00135	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.45	48	63084	63	8	50	5	61
ASE_00136	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.72	60	48122	28	3	20	5	32
ASE_00137	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	42	48423	53	4	47	2	56
ASE_00138	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	40	40395	36	4	31	1	41
ASE_00139	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	80	54195	16	2	8	6	24
ASE_00140	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.67	71	70770	38	6	29	3	54
ASE_00145	RNaseP_arch links to Rfam database...	0.40	0.40	0.40	44	70016	69	9	56	4	67
ASE_00146	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	64	70768	50	2	42	6	60
ASE_00151	RNaseP_bact_a links to Rfam database...	0.26	0.26	0.27	25	51912	66	9	57	0	73
ASE_00153	RNaseP_nuc links to Rfam database...	0.66	0.67	0.65	49	57555	68	2	24	42	24
ASE_00154	RNaseP_arch links to Rfam database...	0.57	0.55	0.58	59	65240	45	4	38	3	48
ASE_00163	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	59	53211	43	4	27	12	34
ASE_00165	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.67	61	52884	31	5	25	1	40
ASE_00168	RNaseP_nuc links to Rfam database...	0.31	0.38	0.25	24	60631	88	24	47	17	40
ASE_00169	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.52	51	57192	52	6	42	4	56
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	63	48740	27	2	23	2	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	65	48425	28	5	21	2	29
ASE_00172	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	65	58893	41	8	30	3	41
ASE_00174	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	62	60975	42	6	32	4	47
ASE_00175	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.59	63	59925	45	7	36	2	44
ASE_00176	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.64	61	59936	38	5	29	4	49
ASE_00179	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.62	55	44164	35	7	27	1	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.74	69	51267	31	2	22	7	31
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	56	57528	52	3	43	6	50
ASE_00183	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.72	79	61316	35	2	28	5	34
ASE_00185	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.74	89	73416	38	6	25	7	39
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.78	91	78887	30	3	22	5	41
ASE_00187	RNaseP_arch links to Rfam database...	0.50	0.48	0.51	55	68528	58	7	45	6	60
ASE_00190	RNaseP_bact_b links to Rfam database...	0.49	0.46	0.52	41	45372	44	7	31	6	49
ASE_00196	RNaseP_arch links to Rfam database...	0.76	0.75	0.77	56	31553	21	2	15	4	19
ASE_00198	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.64	60	52556	40	6	28	6	42
ASE_00203	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	66	46573	26	7	19	0	30
ASE_00209	RNaseP_arch links to Rfam database...	0.29	0.28	0.30	25	42989	57	4	53	0	63
ASE_00210	RNaseP_arch links to Rfam database...	0.61	0.62	0.60	40	27194	28	6	21	1	25
ASE_00213	RNaseP_arch links to Rfam database...	0.72	0.71	0.73	47	27197	18	3	14	1	19
ASE_00214	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.73	74	56178	36	4	24	8	29
ASE_00215	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	50	48429	39	4	33	2	49
ASE_00216	RNaseP_bact_a links to Rfam database...	0.67	0.68	0.66	56	39255	31	9	20	2	26
ASE_00217	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.45	33	40396	48	3	38	7	57
ASE_00221	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.54	53	64522	48	3	42	3	64
ASE_00227	RNaseP_bact_a links to Rfam database...	0.25	0.23	0.27	31	78888	84	6	78	0	102
ASE_00228	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.50	46	46879	46	14	32	0	40
ASE_00229	RNaseP_bact_a links to Rfam database...	0.61	0.61	0.62	53	42400	33	8	25	0	34
ASE_00231	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	62	47800	33	5	28	0	34
ASE_00232	RNaseP_bact_a links to Rfam database...	0.63	0.64	0.61	54	38415	37	10	24	3	30
ASE_00234	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.62	69	75355	47	3	39	5	60
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45676	92	25	52	15	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.60	67	64150	50	2	42	6	47
ASE_00240	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.60	52	46578	44	4	31	9	41
ASE_00241	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.49	43	43868	47	7	38	2	44
ASE_00246	RNaseP_nuc links to Rfam database...	0.30	0.33	0.27	22	48123	71	17	43	11	45
ASE_00247	RNaseP_nuc links to Rfam database...	0.18	0.19	0.17	12	54213	88	15	45	28	52
ASE_00254	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	38	36783	39	4	31	4	44
ASE_00255	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	80	74570	45	7	34	4	50
ASE_00257	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.55	53	50944	47	4	39	4	44
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.63	0.62	76	70377	49	5	42	2	44
ASE_00264	RNaseP_nuc links to Rfam database...	0.84	0.79	0.90	79	49053	24	0	9	15	21
ASE_00267	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.34	27	45070	62	5	48	9	61
ASE_00270	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.80	94	72272	29	4	20	5	34
ASE_00274	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.46	45	55513	54	10	43	1	58
ASE_00277	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.38	35	48112	61	9	49	3	56
ASE_00279	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.71	67	53206	35	3	25	7	34
ASE_00280	RNaseP_bact_a links to Rfam database...	0.36	0.36	0.37	35	51909	65	4	55	6	63
ASE_00282	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	70	77693	58	5	47	6	57
ASE_00283	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.77	78	61675	30	3	20	7	29
ASE_00284	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	65	58210	44	4	32	8	43
ASE_00285	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.80	86	68899	28	3	18	7	36
ASE_00286	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	39	46574	63	5	47	11	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	57	54856	39	2	31	6	46
ASE_00288	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.48	42	45969	48	6	39	3	51
ASE_00291	-	0.38	0.36	0.40	34	48430	53	9	43	1	60
ASE_00295	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.66	79	73801	42	8	32	2	52
ASE_00297	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.51	49	52878	53	4	44	5	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	31	67420	79	9	68	2	82
ASE_00299	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	48	49361	54	5	41	8	52
ASE_00313	RNaseP_nuc links to Rfam database...	0.72	0.71	0.74	63	62396	45	4	18	23	26
ASE_00328	RNaseP_bact_b links to Rfam database...	0.40	0.41	0.40	46	72656	75	3	66	6	66
ASE_00330	RNaseP_nuc links to Rfam database...	0.72	0.71	0.74	64	56193	44	3	20	21	26
ASE_00337	RNaseP_nuc links to Rfam database...	0.52	0.54	0.51	38	39265	50	6	31	13	33
ASE_00338	RNaseP_nuc links to Rfam database...	0.67	0.63	0.72	62	66344	41	4	20	17	36
ASE_00340	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.78	62	45977	26	6	11	9	23
ASE_00342	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	62	62378	41	5	36	0	53
ASE_00346	RNaseP_arch links to Rfam database...	0.31	0.30	0.32	29	48114	65	7	55	3	68
ASE_00359	RNaseP_arch links to Rfam database...	0.49	0.49	0.49	39	42698	49	3	38	8	41
ASE_00361	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	62	75349	59	7	48	4	65
ASE_00362	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.61	55	48115	39	6	29	4	36
ASE_00363	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.53	51	51263	47	5	41	1	43
ASE_00364	RNaseP_bact_a links to Rfam database...	0.42	0.42	0.43	44	54182	63	4	55	4	61
ASE_00366	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.53	55	58549	52	10	39	3	43
ASE_00367	RNaseP_bact_a links to Rfam database...	0.28	0.29	0.27	25	42979	68	8	59	1	61
ASE_00369	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	59	55843	44	4	39	1	48
ASE_00370	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.62	53	41820	33	7	25	1	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.65	62	51907	39	6	28	5	38
ASE_00374	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	46	44765	40	8	31	1	42
ASE_00375	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	73	60280	31	1	24	6	37
ASE_00376	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	48	56857	52	4	44	4	57
ASE_00379	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	49	45974	41	3	30	8	40
ASE_00380	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	54	54854	41	2	36	3	45
ASE_00382	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	41	41823	45	6	35	4	43
ASE_00383	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.62	58	54521	40	3	33	4	47
ASE_00384	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	36	48432	58	2	46	10	56
ASE_00385	RNaseP_bact_a links to Rfam database...	0.42	0.43	0.41	35	41819	53	6	45	2	46
ASE_00386	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	62	50307	41	3	31	7	34
ASE_00387	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.43	45	55841	59	6	53	0	59
ASE_00388	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	37	45669	53	3	44	6	52
ASE_00390	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	36	42118	52	6	35	11	49
ASE_00393	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.39	33	47811	58	2	49	7	60
ASE_00394	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	63	46881	29	5	22	2	30
ASE_00395	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.68	53	41538	35	1	24	10	31
ASE_00396	RNaseP_bact_a links to Rfam database...	0.16	0.16	0.16	13	41535	71	2	66	3	70
ASE_00397	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	57	54510	51	4	44	3	48
ASE_00398	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.65	60	55852	37	1	32	4	44
ASE_00400	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.54	56	57866	51	7	41	3	50
ASE_00401	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.51	67	76897	65	13	51	1	59
ASE_00402	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.43	34	42406	52	7	39	6	51
ASE_00403	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	45	55849	55	4	47	4	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	46	42990	43	0	35	8	39
ASE_00408	-	0.48	0.48	0.49	34	32316	41	2	33	6	37
ASE_00411	RNaseP_bact_a links to Rfam database...	0.35	0.35	0.35	31	49366	63	7	51	5	58
ASE_00413	RNaseP_bact_a links to Rfam database...	0.55	0.58	0.52	47	44461	44	13	30	1	34
ASE_00415	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.51	53	54843	53	7	43	3	50
ASE_00416	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.68	78	77307	43	0	36	7	49
ASE_00417	RNaseP_arch links to Rfam database...	0.36	0.37	0.35	37	54508	73	10	60	3	63
ASE_00418	RNaseP_arch links to Rfam database...	0.20	0.21	0.20	16	38701	67	12	52	3	59
ASE_00419	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.78	75	54850	26	5	16	5	28
ASE_00422	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	41	46880	56	5	45	6	53
ASE_00426	RNaseP_bact_a links to Rfam database...	0.28	0.28	0.28	30	60967	78	7	71	0	78
ASE_00428	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	62	76520	58	5	49	4	63
ASE_00429	-	0.43	0.44	0.43	29	28136	40	8	30	2	37
ASE_00430	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	61	46878	39	5	27	7	36
ASE_00431	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.56	47	46276	41	6	31	4	48
ASE_00434	RNaseP_bact_b links to Rfam database...	0.61	0.60	0.62	66	68159	48	7	33	8	44
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	53	79285	64	4	59	1	82
ASE_00438	RNaseP_bact_a links to Rfam database...	0.46	0.43	0.50	50	65965	52	3	48	1	66
ASE_00441	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.83	81	64163	30	1	16	13	31
ASE_00447	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	52	60274	55	1	51	3	64
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.23	25	64150	91	6	80	5	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.66	71	70768	40	2	35	3	54
CRW_00016	Intron_gpI links to Rfam database...	0.65	0.62	0.69	74	77313	47	5	29	13	46
CRW_00608	-	0.77	0.76	0.79	60	35702	26	2	14	10	19
CRW_00610	Intron_gpI links to Rfam database...	0.42	0.42	0.43	34	36235	46	6	40	0	47
CRW_00613	Intron_gpI links to Rfam database...	0.46	0.42	0.51	33	34915	41	2	30	9	45
CRW_00633	Intron_gpI links to Rfam database...	0.45	0.44	0.47	47	63445	58	10	44	4	59
CRW_00641	-	0.65	0.66	0.65	50	39826	37	6	21	10	26
CRW_00642	-	0.48	0.52	0.44	34	47201	52	9	34	9	31
CRW_00645	-	0.79	0.84	0.75	56	35436	30	8	11	11	11
CRW_00646	-	0.87	0.84	0.90	54	34920	25	0	6	19	10
CRW_00654	-	0.70	0.68	0.72	84	78094	38	4	28	6	40
CRW_00659	-	0.37	0.41	0.33	25	32310	56	15	35	6	36
CRW_00661	-	0.20	0.22	0.19	11	24251	51	16	32	3	40
CRW_00662	-	0.31	0.31	0.32	20	28618	48	2	40	6	45
CRW_00663	-	0.14	0.15	0.13	9	26039	61	6	52	3	52
CRW_00664	-	0.05	0.05	0.04	4	53536	92	20	68	4	74
CRW_00665	-	0.17	0.19	0.16	9	23596	56	11	37	8	39
CRW_00670	Intron_gpI links to Rfam database...	0.77	0.74	0.81	89	70015	26	0	21	5	31
CRW_00671	Intron_gpI links to Rfam database...	0.66	0.64	0.68	75	62725	41	8	27	6	42
CRW_00672	Intron_gpI links to Rfam database...	0.74	0.73	0.74	81	72281	36	10	18	8	30
CRW_00677	-	0.53	0.53	0.52	56	71902	60	13	39	8	49
CRW_00679	-	0.22	0.22	0.22	24	76525	94	14	73	7	83
CRW_00687	-	0.68	0.74	0.63	49	28602	34	8	21	5	17
CRW_00689	-	0.70	0.71	0.68	55	33589	29	11	15	3	22
CRW_00690	-	0.65	0.65	0.65	45	33342	32	6	18	8	24
CRW_00691	-	0.53	0.57	0.50	38	27185	41	4	34	3	29
CRW_00692	Intron_gpI links to Rfam database...	0.57	0.57	0.57	51	68545	54	15	24	15	39
CRW_00715	-	0.63	0.60	0.66	62	69284	36	8	24	4	42
CRW_00721	-	0.52	0.60	0.46	41	58563	65	19	30	16	27
PDB_00078	-	0.47	0.45	0.50	52	49665	53	6	47	0	63
PDB_00278	-	0.13	0.13	0.13	9	24907	60	6	54	0	63
PDB_00423	-	0.07	0.07	0.07	5	26723	68	7	61	0	69
PDB_00701	-	0.47	0.46	0.49	50	45348	54	5	48	1	59
PDB_00747	-	0.68	0.61	0.77	49	24467	15	0	15	0	31
PDB_00827	Intron_gpI links to Rfam database...	0.67	0.59	0.76	48	26965	16	0	15	1	33
PDB_00917	-	0.49	0.47	0.51	45	35157	49	4	39	6	50
PDB_00919	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	48	44163	45	3	39	3	55
PDB_01129	-	0.27	0.28	0.26	20	35433	64	15	43	6	51
PDB_01157	-	0.26	0.24	0.27	24	49998	64	11	53	0	74
TMR_00038	tmRNA links to Rfam database...	0.25	0.25	0.25	28	71140	89	12	73	4	82
TMR_00046	tmRNA links to Rfam database...	0.47	0.48	0.46	46	62734	61	10	45	6	50
TMR_00047	tmRNA links to Rfam database...	0.25	0.30	0.22	17	48438	76	16	45	15	40
TMR_00048	tmRNA links to Rfam database...	0.35	0.37	0.34	35	64876	73	9	60	4	60
TMR_00049	tmRNA links to Rfam database...	0.50	0.52	0.49	45	63098	59	9	38	12	42
TMR_00051	tmRNA links to Rfam database...	0.54	0.51	0.57	48	65619	56	2	34	20	46
TMR_00055	tmRNA links to Rfam database...	0.06	0.07	0.06	8	78870	125	25	100	0	106
TMR_00064	tmRNA links to Rfam database...	0.38	0.38	0.38	39	76925	72	19	45	8	64
TMR_00073	tmRNA links to Rfam database...	0.40	0.39	0.40	46	65588	70	7	62	1	71
TMR_00076	tmRNA links to Rfam database...	0.26	0.27	0.25	27	70768	87	15	66	6	73
TMR_00144	tmRNA links to Rfam database...	0.20	0.21	0.19	22	74189	96	15	79	2	81
TMR_00150	tmRNA links to Rfam database...	0.64	0.64	0.64	27	43029	50	2	13	35	15
TMR_00179	tmRNA links to Rfam database...	0.31	0.33	0.29	32	67050	85	14	65	6	66
TMR_00199	tmRNA links to Rfam database...	0.48	0.49	0.47	45	62740	57	21	29	7	47
TMR_00223	tmRNA links to Rfam database...	0.19	0.20	0.18	19	64158	88	22	62	4	76
TMR_00239	tmRNA links to Rfam database...	0.47	0.48	0.46	46	61676	57	11	43	3	50
TMR_00246	-	0.49	0.56	0.43	19	78166	109	5	20	84	15
TMR_00274	tmRNA links to Rfam database...	0.31	0.32	0.31	34	66684	83	11	66	6	71
TMR_00279	tmRNA links to Rfam database...	0.50	0.51	0.49	48	68908	60	10	40	10	46
TMR_00283	tmRNA links to Rfam database...	0.39	0.42	0.37	40	65233	71	19	49	3	56
TMR_00310	tmRNA links to Rfam database...	0.56	0.56	0.56	55	63805	48	9	34	5	43
TMR_00317	tmRNA links to Rfam database...	0.56	0.57	0.55	58	68160	50	14	33	3	44
TMR_00409	tmRNA links to Rfam database...	0.65	0.70	0.60	32	68582	75	7	14	54	14
TMR_00411	tmRNA links to Rfam database...	0.18	0.18	0.17	16	60983	83	14	62	7	71
TMR_00415	tmRNA links to Rfam database...	0.26	0.26	0.25	26	67059	76	13	63	0	75
TMR_00422	tmRNA links to Rfam database...	0.46	0.49	0.44	45	67793	67	14	44	9	47
TMR_00458	tmRNA links to Rfam database...	0.22	0.22	0.23	20	63458	76	7	61	8	73
TMR_00478	tmRNA links to Rfam database...	0.12	0.13	0.12	13	71900	100	29	68	3	86
TMR_00553	tmRNA links to Rfam database...	0.39	0.38	0.39	31	48126	54	7	41	6	50
TMR_00560	tmRNA links to Rfam database...	0.41	0.42	0.41	41	60975	67	6	53	8	57
TMR_00568	tmRNA links to Rfam database...	0.57	0.57	0.58	56	60629	50	3	38	9	43
TMR_00581	tmRNA links to Rfam database...	0.14	0.14	0.13	14	62376	98	9	82	7	84
TMR_00587	tmRNA links to Rfam database...	0.69	0.68	0.71	68	61329	33	4	24	5	32
TMR_00588	tmRNA links to Rfam database...	0.24	0.25	0.23	25	77311	94	24	61	9	76
TMR_00594	tmRNA links to Rfam database...	0.20	0.20	0.20	21	79294	90	15	71	4	83
TMR_00596	tmRNA links to Rfam database...	0.14	0.15	0.14	14	78107	99	16	73	10	81
TMR_00600	tmRNA links to Rfam database...	0.14	0.14	0.14	16	79684	100	18	82	0	99
TMR_00603	tmRNA links to Rfam database...	0.54	0.56	0.52	24	60332	82	7	15	60	19
TMR_00606	tmRNA links to Rfam database...	0.37	0.36	0.37	39	68900	77	5	62	10	68
TMR_00625	tmRNA links to Rfam database...	0.20	0.21	0.19	22	78889	96	28	64	4	84
TMR_00706	tmRNA links to Rfam database...	0.50	0.50	0.50	51	66328	55	6	45	4	52
TMR_00712	tmRNA links to Rfam database...	0.18	0.18	0.18	20	78497	101	14	75	12	89

^top

Performance of RNASLOpt - scored lower in this pairwise comparison

1. Total counts & total scores for RNASLOpt

Total Base Pair Counts
Total TP	11526
Total TN	15098807
Total FP	12508
Total FP CONTRA	1515
Total FP INCONS	9874
Total FP COMP	1119
Total FN	15014

Total Scores
MCC	0.467
Average MCC ± 95% Confidence Intervals	0.463 ± 0.018
Sensitivity	0.434
Positive Predictive Value	0.503
Nr of predictions	275

^top

2. Individual counts for RNASLOpt [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.55	0.49	0.61	37	34130	30	3	21	6	38
ASE_00002	RNaseP_arch links to Rfam database...	0.64	0.58	0.71	42	35452	20	2	15	3	31
ASE_00004	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.50	44	47807	44	2	42	0	53
ASE_00005	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.70	64	57879	32	0	27	5	53
ASE_00006	RNaseP_bact_a links to Rfam database...	0.49	0.44	0.55	41	47511	35	8	26	1	52
ASE_00007	RNaseP_bact_a links to Rfam database...	0.40	0.36	0.44	40	59594	52	1	50	1	70
ASE_00009	RNaseP_arch links to Rfam database...	0.44	0.40	0.47	27	26049	30	3	27	0	40
ASE_00012	RNaseP_bact_a links to Rfam database...	0.48	0.44	0.52	54	73817	52	8	41	3	69
ASE_00014	RNaseP_arch links to Rfam database...	0.59	0.54	0.64	57	54196	33	3	29	1	49
ASE_00017	RNaseP_nuc links to Rfam database...	0.24	0.25	0.24	16	50973	67	12	39	16	48
ASE_00020	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.65	65	73820	35	3	32	0	61
ASE_00033	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.69	64	64887	31	3	26	2	57
ASE_00036	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.54	60	75744	54	6	45	3	72
ASE_00037	RNaseP_bact_a links to Rfam database...	0.28	0.24	0.33	26	59260	54	3	51	0	84
ASE_00038	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.41	37	53538	54	9	44	1	64
ASE_00040	RNaseP_bact_a links to Rfam database...	0.41	0.37	0.46	49	78896	63	5	53	5	84
ASE_00041	RNaseP_bact_a links to Rfam database...	0.53	0.45	0.62	49	57551	32	2	28	2	59
ASE_00044	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.69	69	54515	35	4	27	4	36
ASE_00046	RNaseP_bact_a links to Rfam database...	0.29	0.25	0.35	26	50328	50	8	41	1	77
ASE_00047	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.44	48	74196	61	1	60	0	82
ASE_00053	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.65	73	79289	42	5	34	3	60
ASE_00056	-	0.60	0.50	0.72	36	30826	23	0	14	9	36
ASE_00064	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	41	45372	43	4	34	5	48
ASE_00066	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.69	68	72292	30	1	29	0	62
ASE_00068	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.72	47	37610	23	0	18	5	38
ASE_00074	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.61	61	67796	40	2	37	1	58
ASE_00076	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.67	64	68169	33	5	27	1	54
ASE_00077	RNaseP_bact_a links to Rfam database...	0.26	0.23	0.29	20	45081	54	7	42	5	66
ASE_00078	RNaseP_bact_a links to Rfam database...	0.40	0.35	0.46	29	43008	41	1	33	7	54
ASE_00079	RNaseP_bact_a links to Rfam database...	0.63	0.56	0.70	56	55531	26	3	21	2	44
ASE_00080	RNaseP_bact_a links to Rfam database...	0.32	0.29	0.36	36	71530	65	6	59	0	87
ASE_00081	RNaseP_bact_a links to Rfam database...	0.47	0.40	0.55	39	49699	32	4	28	0	58
ASE_00082	RNaseP_bact_a links to Rfam database...	0.44	0.39	0.51	45	70412	52	1	42	9	71
ASE_00083	RNaseP_bact_a links to Rfam database...	0.52	0.47	0.58	52	62392	43	5	32	6	58
ASE_00084	RNaseP_bact_a links to Rfam database...	0.67	0.60	0.75	59	53549	24	2	18	4	40
ASE_00089	-	0.41	0.37	0.45	29	31311	35	0	35	0	50
ASE_00090	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	45	55515	52	8	43	1	56
ASE_00092	RNaseP_bact_a links to Rfam database...	0.50	0.45	0.55	51	63453	42	5	37	0	62
ASE_00096	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.64	66	63443	38	0	37	1	49
ASE_00104	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.76	77	64160	24	5	19	0	42
ASE_00111	RNaseP_nuc links to Rfam database...	0.19	0.25	0.16	14	49996	84	33	43	8	43
ASE_00112	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.79	70	75377	25	4	15	6	46
ASE_00115	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	58	54520	42	6	31	5	43
ASE_00116	RNaseP_arch links to Rfam database...	0.24	0.21	0.29	14	31577	35	3	32	0	52
ASE_00118	RNaseP_bact_a links to Rfam database...	0.33	0.31	0.35	32	60635	60	5	54	1	70
ASE_00119	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.73	66	62744	27	1	24	2	42
ASE_00120	RNaseP_arch links to Rfam database...	0.68	0.63	0.75	59	46892	20	4	16	0	35
ASE_00121	RNaseP_arch links to Rfam database...	0.46	0.42	0.50	39	45072	39	6	33	0	53
ASE_00122	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.63	47	43290	28	1	27	0	41
ASE_00123	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	35	38436	36	0	32	4	50
ASE_00125	RNaseP_bact_a links to Rfam database...	0.57	0.52	0.62	46	39266	29	4	24	1	42
ASE_00126	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.68	50	40396	24	5	19	0	32
ASE_00128	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.71	60	53217	24	0	24	0	40
ASE_00129	RNaseP_bact_a links to Rfam database...	0.48	0.44	0.53	49	62742	44	2	42	0	62
ASE_00131	RNaseP_bact_a links to Rfam database...	0.58	0.51	0.66	43	39275	28	0	22	6	42
ASE_00132	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.68	51	50328	25	4	20	1	44
ASE_00134	RNaseP_bact_a links to Rfam database...	0.29	0.27	0.31	26	50318	59	7	52	0	69
ASE_00135	RNaseP_bact_a links to Rfam database...	0.32	0.29	0.34	32	63097	66	3	58	5	77
ASE_00136	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.69	53	48128	32	0	24	8	39
ASE_00137	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.67	59	48428	30	0	29	1	39
ASE_00138	RNaseP_bact_a links to Rfam database...	0.44	0.40	0.50	32	40406	33	2	30	1	49
ASE_00139	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.68	58	54200	30	3	24	3	46
ASE_00140	RNaseP_bact_a links to Rfam database...	0.52	0.47	0.58	59	70774	43	7	36	0	66
ASE_00145	RNaseP_arch links to Rfam database...	0.45	0.40	0.51	44	70039	45	1	41	3	67
ASE_00146	RNaseP_bact_a links to Rfam database...	0.51	0.45	0.58	56	70779	43	5	36	2	68
ASE_00151	RNaseP_bact_a links to Rfam database...	0.33	0.30	0.37	29	51925	49	7	42	0	69
ASE_00153	RNaseP_nuc links to Rfam database...	0.49	0.53	0.46	39	57545	68	15	31	22	34
ASE_00154	RNaseP_arch links to Rfam database...	0.41	0.36	0.45	39	65255	48	3	44	1	68
ASE_00163	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.48	38	53221	51	0	42	9	55
ASE_00165	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.56	48	52889	39	5	33	1	53
ASE_00168	RNaseP_nuc links to Rfam database...	0.17	0.19	0.15	12	60647	82	18	49	15	52
ASE_00169	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.57	52	57199	40	3	37	0	55
ASE_00170	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	52	48748	29	2	26	1	41
ASE_00171	RNaseP_bact_a links to Rfam database...	0.37	0.33	0.41	31	48440	45	3	42	0	63
ASE_00172	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	54	58906	37	6	30	1	52
ASE_00174	RNaseP_bact_a links to Rfam database...	0.41	0.38	0.45	41	60984	51	10	40	1	68
ASE_00175	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	70	59935	26	6	20	0	37
ASE_00176	RNaseP_bact_a links to Rfam database...	0.58	0.51	0.66	56	59946	30	4	25	1	54
ASE_00179	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	47	44181	25	6	19	0	37
ASE_00180	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.48	41	51274	45	7	38	0	59
ASE_00181	RNaseP_bact_a links to Rfam database...	0.38	0.35	0.41	37	57540	58	1	52	5	69
ASE_00183	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.47	44	61332	49	3	46	0	69
ASE_00185	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	76	73429	31	0	31	0	52
ASE_00186	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.69	76	78893	41	1	33	7	56
ASE_00187	RNaseP_arch links to Rfam database...	0.46	0.43	0.50	49	68537	52	7	42	3	66
ASE_00190	RNaseP_bact_b links to Rfam database...	0.52	0.48	0.57	43	45375	39	1	32	6	47
ASE_00196	RNaseP_arch links to Rfam database...	0.41	0.37	0.46	28	31565	36	2	31	3	47
ASE_00198	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.60	54	52560	41	4	32	5	48
ASE_00203	RNaseP_bact_a links to Rfam database...	0.68	0.61	0.76	59	46587	20	2	17	1	37
ASE_00209	RNaseP_arch links to Rfam database...	0.50	0.42	0.59	37	43008	26	2	24	0	51
ASE_00210	RNaseP_arch links to Rfam database...	0.36	0.34	0.38	22	27203	38	4	32	2	43
ASE_00213	RNaseP_arch links to Rfam database...	0.21	0.18	0.24	12	27210	41	2	37	2	54
ASE_00214	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.71	60	56195	33	0	25	8	43
ASE_00215	RNaseP_bact_a links to Rfam database...	0.54	0.48	0.59	48	48435	34	3	30	1	51
ASE_00216	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.68	50	39267	23	4	19	0	32
ASE_00217	RNaseP_bact_a links to Rfam database...	0.28	0.24	0.33	22	40404	47	6	38	3	68
ASE_00221	RNaseP_bact_a links to Rfam database...	0.31	0.26	0.36	31	64535	54	1	53	0	86
ASE_00227	RNaseP_bact_a links to Rfam database...	0.33	0.29	0.38	38	78903	62	6	56	0	95
ASE_00228	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.45	34	46895	44	8	34	2	52
ASE_00229	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.73	54	42412	22	2	18	2	33
ASE_00231	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	63	47812	21	1	19	1	33
ASE_00232	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.79	60	38427	16	7	9	0	24
ASE_00234	RNaseP_bact_a links to Rfam database...	0.43	0.37	0.49	48	75368	52	1	49	2	81
ASE_00237	RNaseP_nuc links to Rfam database...	0.08	0.09	0.07	5	45686	74	20	42	12	51
ASE_00238	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.41	43	64155	65	4	59	2	71
ASE_00240	RNaseP_bact_a links to Rfam database...	0.23	0.20	0.25	19	46590	56	3	53	0	74
ASE_00241	RNaseP_bact_a links to Rfam database...	0.56	0.48	0.66	42	43892	23	1	21	1	45
ASE_00246	RNaseP_nuc links to Rfam database...	0.47	0.43	0.52	29	48149	48	1	26	21	38
ASE_00247	RNaseP_nuc links to Rfam database...	0.17	0.19	0.16	12	54209	84	22	42	20	52
ASE_00254	RNaseP_bact_a links to Rfam database...	0.26	0.24	0.29	20	36787	54	3	46	5	62
ASE_00255	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.56	61	74583	47	5	42	0	69
ASE_00257	RNaseP_bact_a links to Rfam database...	0.52	0.45	0.59	44	50965	31	3	28	0	53
ASE_00263	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	61	70399	40	4	36	0	59
ASE_00264	RNaseP_nuc links to Rfam database...	0.45	0.43	0.47	43	49050	53	6	42	5	57
ASE_00267	RNaseP_bact_a links to Rfam database...	0.24	0.22	0.27	19	45080	57	5	46	6	69
ASE_00270	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.46	51	72280	59	7	52	0	77
ASE_00274	RNaseP_bact_a links to Rfam database...	0.25	0.22	0.28	23	55528	60	4	56	0	80
ASE_00277	RNaseP_bact_a links to Rfam database...	0.28	0.25	0.32	23	48132	50	8	42	0	68
ASE_00279	RNaseP_bact_a links to Rfam database...	0.18	0.16	0.21	16	53226	60	3	56	1	85
ASE_00280	RNaseP_bact_a links to Rfam database...	0.51	0.45	0.58	44	51927	32	5	27	0	54
ASE_00282	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.48	49	77712	54	7	47	0	78
ASE_00283	RNaseP_bact_a links to Rfam database...	0.36	0.33	0.40	35	61689	53	8	44	1	72
ASE_00284	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.57	50	58223	38	4	34	0	58
ASE_00285	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.71	66	68913	33	0	27	6	56
ASE_00286	RNaseP_bact_a links to Rfam database...	0.28	0.24	0.33	22	46599	48	1	43	4	70
ASE_00287	RNaseP_bact_a links to Rfam database...	0.28	0.23	0.33	24	54873	49	3	46	0	79
ASE_00288	RNaseP_bact_a links to Rfam database...	0.50	0.44	0.57	41	45984	31	2	29	0	52
ASE_00291	-	0.57	0.55	0.60	52	48429	35	13	22	0	42
ASE_00295	RNaseP_bact_a links to Rfam database...	0.52	0.46	0.58	60	73817	45	9	34	2	71
ASE_00297	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.61	51	52891	34	5	28	1	47
ASE_00298	RNaseP_bact_a links to Rfam database...	0.39	0.35	0.42	40	67433	56	5	50	1	73
ASE_00299	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.73	61	49371	26	2	21	3	39
ASE_00313	RNaseP_nuc links to Rfam database...	0.48	0.47	0.49	42	62395	60	9	35	16	47
ASE_00328	RNaseP_bact_b links to Rfam database...	0.58	0.54	0.63	60	72676	39	5	30	4	52
ASE_00330	RNaseP_nuc links to Rfam database...	0.43	0.42	0.43	38	56192	59	10	40	9	52
ASE_00337	RNaseP_nuc links to Rfam database...	0.40	0.39	0.40	28	39270	53	4	38	11	43
ASE_00338	RNaseP_nuc links to Rfam database...	0.61	0.58	0.64	57	66341	50	9	23	18	41
ASE_00340	RNaseP_bact_a links to Rfam database...	0.39	0.35	0.44	30	45988	38	7	31	0	55
ASE_00342	RNaseP_bact_a links to Rfam database...	0.41	0.36	0.47	41	62394	47	1	45	1	74
ASE_00346	RNaseP_arch links to Rfam database...	0.53	0.47	0.61	46	48129	32	3	27	2	51
ASE_00359	RNaseP_arch links to Rfam database...	0.51	0.46	0.57	37	42713	28	2	26	0	43
ASE_00361	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.56	59	75360	48	2	45	1	68
ASE_00362	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.64	56	48118	32	7	24	1	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	47	51276	38	6	31	1	47
ASE_00364	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.39	36	54193	56	3	53	0	69
ASE_00366	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.43	39	58563	51	8	43	0	59
ASE_00367	RNaseP_bact_a links to Rfam database...	0.46	0.42	0.50	36	42999	41	4	32	5	50
ASE_00369	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.63	60	55850	35	3	32	0	47
ASE_00370	RNaseP_bact_a links to Rfam database...	0.57	0.51	0.63	43	41837	26	1	24	1	41
ASE_00372	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.47	44	51910	53	5	44	4	56
ASE_00374	RNaseP_bact_a links to Rfam database...	0.28	0.25	0.31	22	44779	51	4	45	2	66
ASE_00375	RNaseP_bact_a links to Rfam database...	0.65	0.58	0.72	64	60289	26	2	23	1	46
ASE_00376	RNaseP_bact_a links to Rfam database...	0.54	0.49	0.59	51	56867	38	4	31	3	54
ASE_00379	RNaseP_bact_a links to Rfam database...	0.44	0.39	0.49	35	45984	45	2	35	8	54
ASE_00380	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	45	54855	53	1	45	7	54
ASE_00382	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.57	40	41835	34	2	28	4	44
ASE_00383	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.56	48	54529	38	1	37	0	57
ASE_00384	RNaseP_bact_a links to Rfam database...	0.35	0.30	0.40	28	48446	51	2	40	9	64
ASE_00385	RNaseP_bact_a links to Rfam database...	0.45	0.38	0.53	31	41846	29	6	22	1	50
ASE_00386	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.55	46	50319	43	6	32	5	50
ASE_00387	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	53	55856	41	2	34	5	51
ASE_00388	RNaseP_bact_a links to Rfam database...	0.34	0.30	0.39	27	45683	51	2	41	8	62
ASE_00390	RNaseP_bact_a links to Rfam database...	0.16	0.15	0.18	13	42121	61	11	50	0	72
ASE_00393	RNaseP_bact_a links to Rfam database...	0.48	0.43	0.54	40	47821	41	3	31	7	53
ASE_00394	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.52	42	46890	42	7	32	3	51
ASE_00395	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	41	41545	37	3	27	7	43
ASE_00396	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	34	41543	42	2	37	3	49
ASE_00397	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.44	41	54522	52	3	49	0	64
ASE_00398	RNaseP_bact_a links to Rfam database...	0.29	0.26	0.33	27	55862	61	4	52	5	77
ASE_00400	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.66	61	57877	34	2	30	2	45
ASE_00401	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	74	76921	33	4	29	0	52
ASE_00402	RNaseP_bact_a links to Rfam database...	0.36	0.33	0.40	28	42416	44	5	37	2	57
ASE_00403	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.67	60	55856	29	3	26	0	47
ASE_00404	RNaseP_bact_a links to Rfam database...	0.27	0.25	0.29	21	42999	57	3	48	6	64
ASE_00408	-	0.23	0.21	0.25	15	32325	47	2	43	2	56
ASE_00411	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	25	49377	56	10	43	3	64
ASE_00413	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.55	39	44480	36	2	30	4	42
ASE_00415	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.58	49	54861	39	2	34	3	54
ASE_00416	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.54	57	77315	53	4	45	4	70
ASE_00417	RNaseP_arch links to Rfam database...	0.43	0.41	0.45	41	54523	53	4	47	2	59
ASE_00418	RNaseP_arch links to Rfam database...	0.07	0.07	0.07	5	38710	68	4	62	2	70
ASE_00419	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	60	54850	37	6	30	1	43
ASE_00422	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.86	68	46892	16	0	11	5	26
ASE_00426	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.45	45	60976	54	11	43	0	63
ASE_00428	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	59	76529	51	3	45	3	66
ASE_00429	-	0.54	0.52	0.58	34	28144	26	3	22	1	32
ASE_00430	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.87	68	46893	15	0	10	5	29
ASE_00431	RNaseP_bact_a links to Rfam database...	0.41	0.37	0.46	35	46284	44	4	37	3	60
ASE_00434	RNaseP_bact_b links to Rfam database...	0.64	0.61	0.68	67	68167	39	9	22	8	43
ASE_00437	RNaseP_bact_a links to Rfam database...	0.40	0.36	0.45	48	79294	60	3	56	1	87
ASE_00438	RNaseP_bact_a links to Rfam database...	0.42	0.36	0.48	42	65979	46	3	42	1	74
ASE_00441	RNaseP_bact_a links to Rfam database...	0.55	0.49	0.62	55	64172	34	3	31	0	57
ASE_00447	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.69	67	60281	34	2	28	4	49
ASE_00448	RNaseP_bact_a links to Rfam database...	0.41	0.38	0.46	42	64169	55	10	40	5	70
ASE_00451	RNaseP_bact_a links to Rfam database...	0.44	0.40	0.48	50	70772	55	3	51	1	75
CRW_00016	Intron_gpI links to Rfam database...	0.48	0.45	0.52	54	77317	58	5	45	8	66
CRW_00608	-	0.73	0.67	0.80	53	35712	13	1	12	0	26
CRW_00610	Intron_gpI links to Rfam database...	0.06	0.06	0.07	5	36246	64	9	55	0	76
CRW_00613	Intron_gpI links to Rfam database...	0.59	0.50	0.70	39	34924	24	1	16	7	39
CRW_00633	Intron_gpI links to Rfam database...	0.50	0.49	0.51	52	63444	52	5	45	2	54
CRW_00641	-	0.23	0.22	0.24	17	39831	66	8	47	11	59
CRW_00642	-	0.40	0.45	0.36	29	47198	62	15	36	11	36
CRW_00645	-	0.43	0.43	0.43	29	35443	39	10	29	0	38
CRW_00646	-	0.53	0.53	0.54	34	34917	32	6	23	3	30
CRW_00654	-	0.84	0.79	0.90	98	78101	14	1	10	3	26
CRW_00659	-	0.19	0.20	0.18	12	32320	54	9	44	1	49
CRW_00661	-	0.27	0.27	0.26	14	24256	47	7	33	7	37
CRW_00662	-	0.31	0.31	0.32	20	28617	52	3	40	9	45
CRW_00663	-	0.16	0.16	0.17	10	26046	55	4	46	5	51
CRW_00664	-	0.17	0.17	0.17	13	53551	71	8	56	7	65
CRW_00665	-	0.00	0.00	0.00	0	23601	53	11	41	1	48
CRW_00670	Intron_gpI links to Rfam database...	0.45	0.43	0.47	52	70015	58	8	50	0	68
CRW_00671	Intron_gpI links to Rfam database...	0.60	0.53	0.68	62	62744	32	2	27	3	55
CRW_00672	Intron_gpI links to Rfam database...	0.43	0.41	0.45	45	72291	57	6	48	3	66
CRW_00677	-	0.50	0.50	0.50	52	71906	54	7	45	2	53
CRW_00679	-	0.35	0.36	0.36	38	76529	70	11	58	1	69
CRW_00687	-	0.55	0.53	0.57	35	28619	30	8	18	4	31
CRW_00689	-	0.38	0.38	0.39	29	33596	50	3	42	5	48
CRW_00690	-	0.58	0.54	0.63	37	33352	26	4	18	4	32
CRW_00691	-	0.47	0.45	0.50	30	27201	31	4	26	1	37
CRW_00692	Intron_gpI links to Rfam database...	0.33	0.34	0.33	31	68540	77	20	44	13	59
CRW_00715	-	0.79	0.73	0.86	76	69290	14	1	11	2	28
CRW_00721	-	0.65	0.66	0.64	45	58583	51	7	18	26	23
PDB_00078	-	0.35	0.32	0.38	37	49673	60	6	54	0	78
PDB_00278	-	0.38	0.36	0.41	26	24912	38	3	35	0	46
PDB_00423	-	0.17	0.16	0.18	12	26729	55	6	49	0	62
PDB_00701	-	0.32	0.30	0.33	33	45352	67	6	60	1	76
PDB_00747	-	0.69	0.55	0.86	44	24480	7	1	6	0	36
PDB_00827	Intron_gpI links to Rfam database...	0.74	0.60	0.91	49	26974	7	0	5	2	32
PDB_00917	-	0.44	0.42	0.47	40	35160	48	7	38	3	55
PDB_00919	RNaseP_bact_a links to Rfam database...	0.37	0.33	0.41	34	44171	50	5	43	2	69
PDB_01129	-	0.42	0.45	0.40	32	35430	53	22	27	4	39
PDB_01157	-	0.11	0.10	0.13	10	50009	67	6	61	0	88
TMR_00038	tmRNA links to Rfam database...	0.30	0.28	0.32	31	71155	71	3	64	4	79
TMR_00046	tmRNA links to Rfam database...	0.40	0.40	0.41	38	62742	59	10	45	4	58
TMR_00047	tmRNA links to Rfam database...	0.28	0.33	0.24	19	48437	71	16	44	11	38
TMR_00048	tmRNA links to Rfam database...	0.53	0.53	0.54	50	64887	48	15	28	5	45
TMR_00049	tmRNA links to Rfam database...	0.36	0.36	0.37	31	63106	57	7	46	4	56
TMR_00051	tmRNA links to Rfam database...	0.67	0.60	0.75	56	65628	34	3	16	15	38
TMR_00055	tmRNA links to Rfam database...	0.40	0.38	0.43	43	78903	62	10	47	5	71
TMR_00064	tmRNA links to Rfam database...	0.28	0.28	0.29	29	76927	72	20	52	0	74
TMR_00073	tmRNA links to Rfam database...	0.34	0.31	0.38	36	65608	59	6	53	0	81
TMR_00076	tmRNA links to Rfam database...	0.48	0.48	0.49	48	70778	57	10	40	7	52
TMR_00144	tmRNA links to Rfam database...	0.37	0.36	0.39	37	74209	59	12	47	0	66
TMR_00150	tmRNA links to Rfam database...	0.64	0.62	0.67	26	43032	47	3	10	34	16
TMR_00179	tmRNA links to Rfam database...	0.22	0.21	0.23	21	67070	76	10	60	6	77
TMR_00199	tmRNA links to Rfam database...	0.51	0.51	0.51	47	62742	52	19	27	6	45
TMR_00223	tmRNA links to Rfam database...	0.31	0.31	0.32	29	64171	65	8	53	4	66
TMR_00239	tmRNA links to Rfam database...	0.48	0.47	0.50	45	61686	46	8	37	1	51
TMR_00246	-	0.73	0.71	0.75	24	78178	87	2	6	79	10
TMR_00274	tmRNA links to Rfam database...	0.62	0.57	0.67	60	66705	35	6	24	5	45
TMR_00279	tmRNA links to Rfam database...	0.42	0.41	0.42	39	68913	64	10	44	10	55
TMR_00283	tmRNA links to Rfam database...	0.35	0.36	0.34	35	65239	69	16	51	2	61
TMR_00310	tmRNA links to Rfam database...	0.50	0.46	0.54	45	63819	52	6	33	13	53
TMR_00317	tmRNA links to Rfam database...	0.36	0.37	0.36	38	68159	71	14	54	3	64
TMR_00409	tmRNA links to Rfam database...	0.57	0.61	0.54	28	68583	57	10	14	33	18
TMR_00411	tmRNA links to Rfam database...	0.41	0.43	0.40	37	60982	65	12	44	9	50
TMR_00415	tmRNA links to Rfam database...	0.53	0.50	0.55	51	67069	43	4	37	2	50
TMR_00422	tmRNA links to Rfam database...	0.54	0.53	0.56	49	67808	46	8	31	7	43
TMR_00458	tmRNA links to Rfam database...	0.26	0.25	0.28	23	63464	69	8	51	10	70
TMR_00478	tmRNA links to Rfam database...	0.15	0.16	0.15	16	71903	94	20	71	3	83
TMR_00553	tmRNA links to Rfam database...	0.32	0.30	0.36	24	48138	49	4	39	6	57
TMR_00560	tmRNA links to Rfam database...	0.57	0.54	0.60	53	60987	36	5	30	1	45
TMR_00568	tmRNA links to Rfam database...	0.33	0.31	0.34	31	60635	66	9	51	6	68
TMR_00581	tmRNA links to Rfam database...	0.58	0.55	0.61	54	62392	35	3	32	0	44
TMR_00587	tmRNA links to Rfam database...	0.68	0.65	0.71	65	61333	29	4	23	2	35
TMR_00588	tmRNA links to Rfam database...	0.30	0.31	0.30	31	77317	78	22	51	5	70
TMR_00594	tmRNA links to Rfam database...	0.48	0.48	0.49	50	79299	57	10	42	5	54
TMR_00596	tmRNA links to Rfam database...	0.28	0.27	0.29	26	78120	72	18	46	8	69
TMR_00600	tmRNA links to Rfam database...	0.30	0.29	0.31	33	79694	74	15	58	1	82
TMR_00603	tmRNA links to Rfam database...	0.59	0.60	0.58	26	60333	66	10	9	47	17
TMR_00606	tmRNA links to Rfam database...	0.53	0.50	0.56	54	68909	48	6	37	5	53
TMR_00625	tmRNA links to Rfam database...	0.46	0.47	0.45	50	78893	66	17	43	6	56
TMR_00706	tmRNA links to Rfam database...	0.37	0.34	0.40	35	66342	54	11	42	1	68
TMR_00712	tmRNA links to Rfam database...	0.30	0.29	0.31	32	78502	79	16	56	7	77

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Afold - scored higher in this pairwise comparison

1. Total counts & total scores for Afold

2. Individual counts for Afold [ download as .csv ]

Performance of RNASLOpt - scored lower in this pairwise comparison

1. Total counts & total scores for RNASLOpt

2. Individual counts for RNASLOpt [ download as .csv ]