CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Afold		RSpredict(20)
MCC	0.548	>	0.297
Average MCC ± 95% Confidence Intervals	0.547 ± 0.021	>	0.269 ± 0.031
Sensitivity	0.533	>	0.170
Positive Predictive Value	0.564	>	0.523
Total TP	8567	>	2725
Total TN	9020371	<	9030343
Total FP	7376	>	2837
Total FP CONTRA	777	>	215
Total FP INCONS	5837	>	2269
Total FP COMP	762	>	353
Total FN	7498	<	13340
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Afold and RSpredict(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Afold and RSpredict(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Afold and RSpredict(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for Afold and RSpredict(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Afold and RSpredict(20)).

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Performance of Afold - scored higher in this pairwise comparison

1. Total counts & total scores for Afold

Total Base Pair Counts
Total TP	8567
Total TN	9020371
Total FP	7376
Total FP CONTRA	777
Total FP INCONS	5837
Total FP COMP	762
Total FN	7498

Total Scores
MCC	0.548
Average MCC ± 95% Confidence Intervals	0.547 ± 0.021
Sensitivity	0.533
Positive Predictive Value	0.564
Nr of predictions	152

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2. Individual counts for Afold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.51	0.52	0.51	50	47797	49	10	38	1	47
ASE_00005	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	66	57870	39	0	34	5	51
ASE_00006	RNaseP_bact_a links to Rfam database...	0.66	0.67	0.65	62	47491	36	7	26	3	31
ASE_00007	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	58	59586	45	1	40	4	52
ASE_00012	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	48	73808	72	1	63	8	75
ASE_00020	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	68	73807	46	6	39	1	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.59	81	104058	66	7	50	9	79
ASE_00028	RNaseP_bact_b links to Rfam database...	0.58	0.56	0.61	70	84551	54	4	41	9	56
ASE_00037	RNaseP_bact_a links to Rfam database...	0.34	0.32	0.37	35	59245	63	0	60	3	75
ASE_00038	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	53	53529	48	4	42	2	48
ASE_00040	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	63	78883	63	5	52	6	70
ASE_00041	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	55	57530	51	2	43	6	53
ASE_00042	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	61	89969	73	3	67	3	84
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	74	54520	26	3	18	5	31
ASE_00064	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	38	45364	54	5	44	5	51
ASE_00068	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.36	27	37599	50	2	47	1	58
ASE_00074	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.50	56	67784	57	7	49	1	63
ASE_00075	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.72	95	108679	46	3	34	9	67
ASE_00077	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	44	45068	39	6	32	1	42
ASE_00078	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.67	56	42988	32	5	22	5	27
ASE_00080	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	59	71518	59	3	51	5	64
ASE_00081	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.46	44	49675	53	5	46	2	53
ASE_00082	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	63	70396	51	1	40	10	53
ASE_00083	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.76	74	62383	32	1	23	8	36
ASE_00084	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	70	53532	30	6	20	4	29
ASE_00087	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.61	74	88288	54	5	43	6	70
ASE_00090	RNaseP_bact_a links to Rfam database...	0.46	0.47	0.47	47	55510	59	6	48	5	54
ASE_00092	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	73	63444	35	3	26	6	40
ASE_00104	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	60	64153	49	8	40	1	59
ASE_00115	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	55	54517	51	1	42	8	46
ASE_00118	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.39	39	60625	64	5	57	2	63
ASE_00119	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.67	65	62738	35	1	31	3	43
ASE_00123	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	36	38425	48	3	39	6	49
ASE_00125	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	55	39255	32	4	26	2	33
ASE_00126	RNaseP_bact_a links to Rfam database...	0.74	0.74	0.73	61	40387	27	3	19	5	21
ASE_00128	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.77	72	53207	30	2	20	8	28
ASE_00129	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.80	82	62732	26	3	18	5	29
ASE_00131	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.70	47	39273	31	0	20	11	38
ASE_00134	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	40	50313	54	7	43	4	55
ASE_00135	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.45	48	63084	63	8	50	5	61
ASE_00136	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.72	60	48122	28	3	20	5	32
ASE_00137	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	42	48423	53	4	47	2	56
ASE_00138	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	40	40395	36	4	31	1	41
ASE_00140	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.67	71	70770	38	6	29	3	54
ASE_00146	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	64	70768	50	2	42	6	60
ASE_00153	RNaseP_nuc links to Rfam database...	0.66	0.67	0.65	49	57555	68	2	24	42	24
ASE_00163	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	59	53211	43	4	27	12	34
ASE_00165	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.67	61	52884	31	5	25	1	40
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	63	48740	27	2	23	2	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	65	48425	28	5	21	2	29
ASE_00172	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	65	58893	41	8	30	3	41
ASE_00174	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	62	60975	42	6	32	4	47
ASE_00175	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.59	63	59925	45	7	36	2	44
ASE_00179	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.62	55	44164	35	7	27	1	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.74	69	51267	31	2	22	7	31
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	56	57528	52	3	43	6	50
ASE_00182	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.62	79	84128	49	6	42	1	57
ASE_00183	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.72	79	61316	35	2	28	5	34
ASE_00185	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.74	89	73416	38	6	25	7	39
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.78	91	78887	30	3	22	5	41
ASE_00190	RNaseP_bact_b links to Rfam database...	0.49	0.46	0.52	41	45372	44	7	31	6	49
ASE_00197	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	67	89123	66	4	59	3	78
ASE_00198	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.64	60	52556	40	6	28	6	42
ASE_00203	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	66	46573	26	7	19	0	30
ASE_00212	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.74	99	93827	39	3	32	4	49
ASE_00214	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.73	74	56178	36	4	24	8	29
ASE_00215	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	50	48429	39	4	33	2	49
ASE_00216	RNaseP_bact_a links to Rfam database...	0.67	0.68	0.66	56	39255	31	9	20	2	26
ASE_00217	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.45	33	40396	48	3	38	7	57
ASE_00221	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.54	53	64522	48	3	42	3	64
ASE_00228	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.50	46	46879	46	14	32	0	40
ASE_00229	RNaseP_bact_a links to Rfam database...	0.61	0.61	0.62	53	42400	33	8	25	0	34
ASE_00231	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	62	47800	33	5	28	0	34
ASE_00232	RNaseP_bact_a links to Rfam database...	0.63	0.64	0.61	54	38415	37	10	24	3	30
ASE_00234	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.62	69	75355	47	3	39	5	60
ASE_00238	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.60	67	64150	50	2	42	6	47
ASE_00241	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.49	43	43868	47	7	38	2	44
ASE_00254	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	38	36783	39	4	31	4	44
ASE_00255	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	80	74570	45	7	34	4	50
ASE_00257	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.55	53	50944	47	4	39	4	44
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.63	0.62	76	70377	49	5	42	2	44
ASE_00267	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.34	27	45070	62	5	48	9	61
ASE_00270	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.80	94	72272	29	4	20	5	34
ASE_00274	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.46	45	55513	54	10	43	1	58
ASE_00277	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.38	35	48112	61	9	49	3	56
ASE_00279	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.71	67	53206	35	3	25	7	34
ASE_00280	RNaseP_bact_a links to Rfam database...	0.36	0.36	0.37	35	51909	65	4	55	6	63
ASE_00282	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	70	77693	58	5	47	6	57
ASE_00283	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.77	78	61675	30	3	20	7	29
ASE_00284	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	65	58210	44	4	32	8	43
ASE_00285	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.80	86	68899	28	3	18	7	36
ASE_00286	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	39	46574	63	5	47	11	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	57	54856	39	2	31	6	46
ASE_00292	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	80	81689	43	2	39	2	58
ASE_00294	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	117	114335	32	2	27	3	54
ASE_00296	RNaseP_bact_a links to Rfam database...	0.25	0.24	0.27	35	91676	98	8	87	3	110
ASE_00297	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.51	49	52878	53	4	44	5	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	31	67420	79	9	68	2	82
ASE_00328	RNaseP_bact_b links to Rfam database...	0.40	0.41	0.40	46	72656	75	3	66	6	66
ASE_00332	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	75	81682	55	2	51	2	63
ASE_00340	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.78	62	45977	26	6	11	9	23
ASE_00342	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	62	62378	41	5	36	0	53
ASE_00361	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	62	75349	59	7	48	4	65
ASE_00362	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.61	55	48115	39	6	29	4	36
ASE_00363	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.53	51	51263	47	5	41	1	43
ASE_00364	RNaseP_bact_a links to Rfam database...	0.42	0.42	0.43	44	54182	63	4	55	4	61
ASE_00366	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.53	55	58549	52	10	39	3	43
ASE_00367	RNaseP_bact_a links to Rfam database...	0.28	0.29	0.27	25	42979	68	8	59	1	61
ASE_00369	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	59	55843	44	4	39	1	48
ASE_00370	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.62	53	41820	33	7	25	1	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.65	62	51907	39	6	28	5	38
ASE_00374	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	46	44765	40	8	31	1	42
ASE_00376	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	48	56857	52	4	44	4	57
ASE_00379	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	49	45974	41	3	30	8	40
ASE_00382	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	41	41823	45	6	35	4	43
ASE_00383	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.62	58	54521	40	3	33	4	47
ASE_00384	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	36	48432	58	2	46	10	56
ASE_00386	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	62	50307	41	3	31	7	34
ASE_00387	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.43	45	55841	59	6	53	0	59
ASE_00388	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	37	45669	53	3	44	6	52
ASE_00390	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	36	42118	52	6	35	11	49
ASE_00393	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.39	33	47811	58	2	49	7	60
ASE_00394	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	63	46881	29	5	22	2	30
ASE_00395	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.68	53	41538	35	1	24	10	31
ASE_00396	RNaseP_bact_a links to Rfam database...	0.16	0.16	0.16	13	41535	71	2	66	3	70
ASE_00397	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	57	54510	51	4	44	3	48
ASE_00398	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.65	60	55852	37	1	32	4	44
ASE_00400	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.54	56	57866	51	7	41	3	50
ASE_00401	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.51	67	76897	65	13	51	1	59
ASE_00402	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.43	34	42406	52	7	39	6	51
ASE_00403	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	45	55849	55	4	47	4	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	46	42990	43	0	35	8	39
ASE_00411	RNaseP_bact_a links to Rfam database...	0.35	0.35	0.35	31	49366	63	7	51	5	58
ASE_00413	RNaseP_bact_a links to Rfam database...	0.55	0.58	0.52	47	44461	44	13	30	1	34
ASE_00415	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.51	53	54843	53	7	43	3	50
ASE_00416	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.68	78	77307	43	0	36	7	49
ASE_00419	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.78	75	54850	26	5	16	5	28
ASE_00422	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	41	46880	56	5	45	6	53
ASE_00428	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	62	76520	58	5	49	4	63
ASE_00430	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	61	46878	39	5	27	7	36
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	53	79285	64	4	59	1	82
ASE_00441	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.83	81	64163	30	1	16	13	31
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.23	25	64150	91	6	80	5	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.66	71	70768	40	2	35	3	54
RFA_00599	Telomerase-vert links to Rfam database...	0.67	0.70	0.64	78	101353	66	16	28	22	33
RFA_00601	Telomerase-vert links to Rfam database...	0.09	0.11	0.08	12	99092	139	35	96	8	102
RFA_00602	Telomerase-vert links to Rfam database...	0.50	0.53	0.47	62	101344	91	18	51	22	54
TMR_00038	tmRNA links to Rfam database...	0.25	0.25	0.25	28	71140	89	12	73	4	82
TMR_00046	tmRNA links to Rfam database...	0.47	0.48	0.46	46	62734	61	10	45	6	50
TMR_00048	tmRNA links to Rfam database...	0.35	0.37	0.34	35	64876	73	9	60	4	60
TMR_00458	tmRNA links to Rfam database...	0.22	0.22	0.23	20	63458	76	7	61	8	73
TMR_00568	tmRNA links to Rfam database...	0.57	0.57	0.58	56	60629	50	3	38	9	43

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Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

Total Base Pair Counts
Total TP	2725
Total TN	9030343
Total FP	2837
Total FP CONTRA	215
Total FP INCONS	2269
Total FP COMP	353
Total FN	13340

Total Scores
MCC	0.297
Average MCC ± 95% Confidence Intervals	0.269 ± 0.031
Sensitivity	0.170
Positive Predictive Value	0.523
Nr of predictions	152

^top

2. Individual counts for RSpredict(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.89	48	47841	10	0	6	4	49
ASE_00005	RNaseP_bact_a links to Rfam database...	0.35	0.19	0.67	22	57937	11	0	11	0	95
ASE_00006	RNaseP_bact_a links to Rfam database...	0.28	0.13	0.60	12	47566	8	0	8	0	81
ASE_00007	RNaseP_bact_a links to Rfam database...	0.25	0.10	0.65	11	59668	6	0	6	0	99
ASE_00012	RNaseP_bact_a links to Rfam database...	0.16	0.07	0.42	8	73901	14	0	11	3	115
ASE_00020	RNaseP_bact_a links to Rfam database...	0.32	0.21	0.50	26	73868	28	6	20	2	100
ASE_00021	RNaseP_bact_a links to Rfam database...	0.16	0.08	0.32	12	104159	28	0	25	3	148
ASE_00028	RNaseP_bact_b links to Rfam database...	0.68	0.59	0.80	74	84573	27	1	18	8	52
ASE_00037	RNaseP_bact_a links to Rfam database...	0.27	0.17	0.43	19	59296	27	1	24	2	91
ASE_00038	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.19	5	53602	21	3	18	0	96
ASE_00040	RNaseP_bact_a links to Rfam database...	0.20	0.09	0.46	12	78977	14	0	14	0	121
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57611	19	1	18	0	108
ASE_00042	RNaseP_bact_a links to Rfam database...	0.23	0.12	0.47	17	90064	20	1	18	1	128
ASE_00044	RNaseP_bact_a links to Rfam database...	0.21	0.08	0.57	8	54601	9	0	6	3	97
ASE_00064	RNaseP_bact_a links to Rfam database...	0.19	0.11	0.33	10	45421	22	3	17	2	79
ASE_00068	RNaseP_bact_a links to Rfam database...	0.37	0.25	0.57	21	37638	21	1	15	5	64
ASE_00074	RNaseP_bact_a links to Rfam database...	0.23	0.13	0.41	15	67859	24	0	22	2	104
ASE_00075	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.20	8	108771	32	1	31	0	154
ASE_00077	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.21	3	45136	14	1	10	3	83
ASE_00078	RNaseP_bact_a links to Rfam database...	0.57	0.39	0.84	32	43033	8	1	5	2	51
ASE_00080	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	71612	21	2	17	2	123
ASE_00081	RNaseP_bact_a links to Rfam database...	0.14	0.06	0.33	6	49752	13	1	11	1	91
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70476	25	3	21	1	116
ASE_00083	RNaseP_bact_a links to Rfam database...	0.14	0.06	0.32	7	62459	17	0	15	2	103
ASE_00084	RNaseP_bact_a links to Rfam database...	0.12	0.06	0.24	6	53603	21	0	19	2	93
ASE_00087	RNaseP_bact_a links to Rfam database...	0.39	0.26	0.59	37	88347	28	1	25	2	107
ASE_00090	RNaseP_bact_a links to Rfam database...	0.39	0.27	0.56	27	55563	23	3	18	2	74
ASE_00092	RNaseP_bact_a links to Rfam database...	0.15	0.07	0.31	8	63520	19	2	16	1	105
ASE_00104	RNaseP_bact_a links to Rfam database...	0.23	0.11	0.50	13	64235	14	0	13	1	106
ASE_00115	RNaseP_bact_a links to Rfam database...	0.39	0.27	0.56	27	54567	23	0	21	2	74
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60705	22	0	21	1	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.22	4	62817	17	1	13	3	104
ASE_00123	RNaseP_bact_a links to Rfam database...	0.11	0.04	0.38	3	38495	7	0	5	2	82
ASE_00125	RNaseP_bact_a links to Rfam database...	0.36	0.16	0.82	14	39323	4	0	3	1	74
ASE_00126	RNaseP_bact_a links to Rfam database...	0.29	0.15	0.57	12	40449	11	1	8	2	70
ASE_00128	RNaseP_bact_a links to Rfam database...	0.23	0.12	0.43	12	53273	17	1	15	1	88
ASE_00129	RNaseP_bact_a links to Rfam database...	0.17	0.07	0.40	8	62815	14	1	11	2	103
ASE_00131	RNaseP_bact_a links to Rfam database...	0.34	0.22	0.51	19	39303	24	0	18	6	66
ASE_00134	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.67	32	50355	17	3	13	1	63
ASE_00135	RNaseP_bact_a links to Rfam database...	0.36	0.24	0.53	26	63141	25	1	22	2	83
ASE_00136	RNaseP_bact_a links to Rfam database...	0.34	0.20	0.60	18	48175	15	0	12	3	74
ASE_00137	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.08	2	48491	24	2	21	1	96
ASE_00138	RNaseP_bact_a links to Rfam database...	0.68	0.59	0.79	48	40409	18	2	11	5	33
ASE_00140	RNaseP_bact_a links to Rfam database...	0.53	0.42	0.65	53	70795	33	3	25	5	72
ASE_00146	RNaseP_bact_a links to Rfam database...	0.19	0.08	0.43	10	70853	14	2	11	1	114
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57614	24	5	11	8	73
ASE_00163	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.09	1	53290	14	1	9	4	92
ASE_00165	RNaseP_bact_a links to Rfam database...	0.17	0.09	0.35	9	52949	18	4	13	1	92
ASE_00170	RNaseP_bact_a links to Rfam database...	0.47	0.33	0.67	31	48782	17	1	14	2	62
ASE_00171	RNaseP_bact_a links to Rfam database...	0.20	0.09	0.47	8	48499	12	2	7	3	86
ASE_00172	RNaseP_bact_a links to Rfam database...	0.41	0.23	0.73	24	58963	11	1	8	2	82
ASE_00174	RNaseP_bact_a links to Rfam database...	0.16	0.07	0.35	8	61052	16	1	14	1	101
ASE_00175	RNaseP_bact_a links to Rfam database...	0.41	0.25	0.68	27	59991	15	1	12	2	80
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44238	16	2	13	1	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.21	0.09	0.50	9	51342	13	1	8	4	91
ASE_00181	RNaseP_bact_a links to Rfam database...	0.32	0.16	0.63	17	57603	10	0	10	0	89
ASE_00182	RNaseP_bact_a links to Rfam database...	0.15	0.09	0.27	12	84210	35	3	30	2	124
ASE_00183	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61405	20	0	20	0	113
ASE_00185	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.26	9	73501	29	0	26	3	119
ASE_00186	RNaseP_bact_a links to Rfam database...	0.24	0.13	0.46	17	78966	22	1	19	2	115
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45434	18	4	13	1	90
ASE_00197	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.10	3	89222	28	0	28	0	142
ASE_00198	RNaseP_bact_a links to Rfam database...	0.06	0.02	0.18	2	52639	10	0	9	1	100
ASE_00203	RNaseP_bact_a links to Rfam database...	0.16	0.06	0.43	6	46651	8	0	8	0	90
ASE_00212	RNaseP_bact_a links to Rfam database...	0.21	0.11	0.40	17	93918	26	4	22	0	131
ASE_00214	RNaseP_bact_a links to Rfam database...	0.18	0.09	0.38	9	56256	18	0	15	3	94
ASE_00215	RNaseP_bact_a links to Rfam database...	0.22	0.15	0.31	15	48468	34	1	32	1	84
ASE_00216	RNaseP_bact_a links to Rfam database...	0.19	0.09	0.41	7	39323	10	0	10	0	75
ASE_00217	RNaseP_bact_a links to Rfam database...	0.11	0.04	0.27	4	40455	11	0	11	0	86
ASE_00221	RNaseP_bact_a links to Rfam database...	0.26	0.13	0.54	15	64592	14	0	13	1	102
ASE_00228	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	54	46905	18	3	9	6	32
ASE_00229	RNaseP_bact_a links to Rfam database...	0.56	0.39	0.81	34	42444	9	2	6	1	53
ASE_00231	RNaseP_bact_a links to Rfam database...	0.18	0.08	0.40	8	47875	15	0	12	3	88
ASE_00232	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	60	38439	9	1	3	5	24
ASE_00234	RNaseP_bact_a links to Rfam database...	0.30	0.19	0.47	24	75415	28	4	23	1	105
ASE_00238	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.04	1	64236	27	1	23	3	113
ASE_00241	RNaseP_bact_a links to Rfam database...	0.67	0.60	0.75	52	43887	22	2	15	5	35
ASE_00254	RNaseP_bact_a links to Rfam database...	0.29	0.12	0.71	10	36842	6	0	4	2	72
ASE_00255	RNaseP_bact_a links to Rfam database...	0.29	0.15	0.59	19	74659	16	1	12	3	111
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51014	29	3	23	3	97
ASE_00263	RNaseP_bact_a links to Rfam database...	0.33	0.23	0.46	28	70439	34	2	31	1	92
ASE_00267	RNaseP_bact_a links to Rfam database...	0.45	0.32	0.65	28	45107	17	1	14	2	60
ASE_00270	RNaseP_bact_a links to Rfam database...	0.24	0.14	0.42	18	72347	26	1	24	1	110
ASE_00274	RNaseP_bact_a links to Rfam database...	0.18	0.07	0.47	7	55596	11	1	7	3	96
ASE_00277	RNaseP_bact_a links to Rfam database...	0.11	0.05	0.24	5	48184	18	4	12	2	86
ASE_00279	RNaseP_bact_a links to Rfam database...	0.61	0.48	0.79	48	53240	18	2	11	5	53
ASE_00280	RNaseP_bact_a links to Rfam database...	0.63	0.54	0.74	53	51931	23	0	19	4	45
ASE_00282	RNaseP_bact_a links to Rfam database...	0.14	0.06	0.31	8	77789	20	2	16	2	119
ASE_00283	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.86	54	61713	13	0	9	4	53
ASE_00284	RNaseP_bact_a links to Rfam database...	0.27	0.14	0.54	15	58283	16	0	13	3	93
ASE_00285	RNaseP_bact_a links to Rfam database...	0.39	0.25	0.60	31	68954	22	3	18	1	91
ASE_00286	RNaseP_bact_a links to Rfam database...	0.24	0.11	0.53	10	46646	12	0	9	3	82
ASE_00287	RNaseP_bact_a links to Rfam database...	0.16	0.08	0.33	8	54922	16	4	12	0	95
ASE_00292	RNaseP_bact_a links to Rfam database...	0.20	0.11	0.37	15	81769	28	1	25	2	123
ASE_00294	RNaseP_bact_a links to Rfam database...	0.15	0.08	0.29	14	114432	37	1	34	2	157
ASE_00296	RNaseP_bact_a links to Rfam database...	0.12	0.06	0.22	9	91765	32	2	30	0	136
ASE_00297	RNaseP_bact_a links to Rfam database...	0.21	0.10	0.45	10	52953	14	0	12	2	88
ASE_00298	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.50	13	67502	15	1	12	2	100
ASE_00328	RNaseP_bact_b links to Rfam database...	0.63	0.56	0.71	63	72682	35	1	25	9	49
ASE_00332	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.49	17	81775	19	0	18	1	121
ASE_00340	RNaseP_bact_a links to Rfam database...	0.59	0.41	0.83	35	46014	10	2	5	3	50
ASE_00342	RNaseP_bact_a links to Rfam database...	0.57	0.39	0.83	45	62427	11	2	7	2	70
ASE_00361	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.10	1	75456	11	0	9	2	126
ASE_00362	RNaseP_bact_a links to Rfam database...	0.17	0.08	0.37	7	48186	14	0	12	2	84
ASE_00363	RNaseP_bact_a links to Rfam database...	0.39	0.26	0.60	24	51320	18	1	15	2	70
ASE_00364	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	54262	19	0	19	0	101
ASE_00366	RNaseP_bact_a links to Rfam database...	0.06	0.03	0.10	3	58624	26	4	22	0	95
ASE_00367	RNaseP_bact_a links to Rfam database...	0.27	0.15	0.50	13	43045	15	2	11	2	73
ASE_00369	RNaseP_bact_a links to Rfam database...	0.43	0.26	0.72	28	55906	15	0	11	4	79
ASE_00370	RNaseP_bact_a links to Rfam database...	0.13	0.06	0.29	5	41888	13	1	11	1	79
ASE_00372	RNaseP_bact_a links to Rfam database...	0.44	0.29	0.67	29	51960	15	2	12	1	71
ASE_00374	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.07	1	44836	19	0	13	6	87
ASE_00376	RNaseP_bact_a links to Rfam database...	0.43	0.25	0.76	26	56919	10	0	8	2	79
ASE_00379	RNaseP_bact_a links to Rfam database...	0.47	0.29	0.74	26	46021	11	1	8	2	63
ASE_00382	RNaseP_bact_a links to Rfam database...	0.57	0.42	0.78	35	41860	12	1	9	2	49
ASE_00383	RNaseP_bact_a links to Rfam database...	0.17	0.08	0.38	8	54594	15	2	11	2	97
ASE_00384	RNaseP_bact_a links to Rfam database...	0.19	0.10	0.38	9	48492	18	1	14	3	83
ASE_00386	RNaseP_bact_a links to Rfam database...	0.13	0.05	0.33	5	50388	11	0	10	1	91
ASE_00387	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.50	12	55921	15	1	11	3	92
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45739	14	1	13	0	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.71	30	42153	16	1	11	4	55
ASE_00393	RNaseP_bact_a links to Rfam database...	0.36	0.22	0.61	20	47862	15	1	12	2	73
ASE_00394	RNaseP_bact_a links to Rfam database...	0.71	0.60	0.84	56	46904	17	2	9	6	37
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41595	22	1	20	1	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.05	1	41597	20	0	18	2	82
ASE_00397	RNaseP_bact_a links to Rfam database...	0.31	0.17	0.55	18	54582	17	2	13	2	87
ASE_00398	RNaseP_bact_a links to Rfam database...	0.15	0.08	0.30	8	55918	22	0	19	3	96
ASE_00400	RNaseP_bact_a links to Rfam database...	0.28	0.15	0.53	16	57940	18	1	13	4	90
ASE_00401	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77010	20	0	18	2	126
ASE_00402	RNaseP_bact_a links to Rfam database...	0.12	0.05	0.31	4	42473	11	0	9	2	81
ASE_00403	RNaseP_bact_a links to Rfam database...	0.44	0.27	0.73	29	55905	13	3	8	2	78
ASE_00404	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.19	3	43055	18	1	12	5	82
ASE_00411	RNaseP_bact_a links to Rfam database...	0.21	0.10	0.43	9	49434	15	1	11	3	80
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44533	19	1	17	1	81
ASE_00415	RNaseP_bact_a links to Rfam database...	0.13	0.06	0.30	6	54926	14	2	12	0	97
ASE_00416	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.27	3	77410	8	0	8	0	124
ASE_00419	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.48	12	54921	14	2	11	1	91
ASE_00422	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.07	2	46944	27	0	25	2	92
ASE_00428	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.13	2	76620	15	1	13	1	123
ASE_00430	RNaseP_bact_a links to Rfam database...	0.20	0.09	0.45	9	46951	11	0	11	0	88
ASE_00437	RNaseP_bact_a links to Rfam database...	0.57	0.41	0.81	55	79333	18	2	11	5	80
ASE_00441	RNaseP_bact_a links to Rfam database...	0.28	0.16	0.47	18	64223	24	1	19	4	94
ASE_00448	RNaseP_bact_a links to Rfam database...	0.58	0.46	0.74	51	64192	22	2	16	4	61
ASE_00451	RNaseP_bact_a links to Rfam database...	0.41	0.25	0.67	31	70830	17	1	14	2	94
RFA_00599	Telomerase-vert links to Rfam database...	0.44	0.32	0.61	36	101416	35	2	21	12	75
RFA_00601	Telomerase-vert links to Rfam database...	0.53	0.35	0.80	40	99185	20	0	10	10	74
RFA_00602	Telomerase-vert links to Rfam database...	0.44	0.29	0.65	34	101423	27	1	17	9	82
TMR_00038	tmRNA links to Rfam database...	0.47	0.30	0.73	33	71208	14	4	8	2	77
TMR_00046	tmRNA links to Rfam database...	0.54	0.50	0.59	48	62753	36	12	22	2	48
TMR_00048	tmRNA links to Rfam database...	0.49	0.44	0.54	42	64902	40	10	26	4	53
TMR_00458	tmRNA links to Rfam database...	0.55	0.47	0.64	44	63477	26	6	19	1	49
TMR_00568	tmRNA links to Rfam database...	0.32	0.28	0.35	28	60647	51	10	41	0	71

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Afold - scored higher in this pairwise comparison

1. Total counts & total scores for Afold

2. Individual counts for Afold [ download as .csv ]

Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

2. Individual counts for RSpredict(20) [ download as .csv ]