CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	CMfinder(20)		Vsfold5
MCC	0.488	>	0.369
Average MCC ± 95% Confidence Intervals	0.484 ± 0.017	>	0.362 ± 0.020
Sensitivity	0.316	<	0.342
Positive Predictive Value	0.754	>	0.400
Total TP	6418	<	6930
Total TN	11611760	>	11602937
Total FP	2383	<	10981
Total FP CONTRA	188	<	1125
Total FP INCONS	1906	<	9280
Total FP COMP	289	<	576
Total FN	13870	>	13358
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of CMfinder(20) and Vsfold5. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for CMfinder(20) and Vsfold5).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for CMfinder(20) and Vsfold5).
Comparison of average Matthews Correlation Coefficients (MCCs) for CMfinder(20) and Vsfold5. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for CMfinder(20) and Vsfold5).

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Performance of CMfinder(20) - scored higher in this pairwise comparison

1. Total counts & total scores for CMfinder(20)

Total Base Pair Counts
Total TP	6418
Total TN	11611760
Total FP	2383
Total FP CONTRA	188
Total FP INCONS	1906
Total FP COMP	289
Total FN	13870

Total Scores
MCC	0.488
Average MCC ± 95% Confidence Intervals	0.484 ± 0.017
Sensitivity	0.316
Positive Predictive Value	0.754
Nr of predictions	196

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2. Individual counts for CMfinder(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.50	0.29	0.88	28	47863	4	0	4	0	69
ASE_00005	RNaseP_bact_a links to Rfam database...	0.41	0.26	0.67	30	57925	15	0	15	0	87
ASE_00006	RNaseP_bact_a links to Rfam database...	0.54	0.40	0.74	37	47536	13	1	12	0	56
ASE_00007	RNaseP_bact_a links to Rfam database...	0.64	0.48	0.85	53	59623	11	1	8	2	57
ASE_00012	RNaseP_bact_a links to Rfam database...	0.41	0.18	0.96	22	73897	1	0	1	0	101
ASE_00018	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.75	54	80529	20	1	17	2	80
ASE_00020	RNaseP_bact_a links to Rfam database...	0.40	0.24	0.68	30	73876	16	1	13	2	96
ASE_00022	RNaseP_bact_b links to Rfam database...	0.45	0.28	0.71	35	82979	14	1	13	0	89
ASE_00028	RNaseP_bact_b links to Rfam database...	0.59	0.41	0.84	52	84604	11	3	7	1	74
ASE_00035	RNaseP_bact_a links to Rfam database...	0.46	0.29	0.74	34	70454	12	1	11	0	84
ASE_00037	RNaseP_bact_a links to Rfam database...	0.55	0.42	0.72	46	59276	18	0	18	0	64
ASE_00038	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.73	37	53577	14	1	13	0	64
ASE_00040	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.80	32	78963	9	1	7	1	101
ASE_00041	RNaseP_bact_a links to Rfam database...	0.54	0.38	0.77	41	57577	12	0	12	0	67
ASE_00044	RNaseP_bact_a links to Rfam database...	0.45	0.29	0.71	30	54573	13	0	12	1	75
ASE_00064	RNaseP_bact_a links to Rfam database...	0.48	0.30	0.75	27	45415	10	1	8	1	62
ASE_00068	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.86	37	37632	6	0	6	0	48
ASE_00074	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.91	52	67839	6	0	5	1	67
ASE_00077	RNaseP_bact_a links to Rfam database...	0.59	0.36	0.97	31	45118	1	0	1	0	55
ASE_00078	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	51	43010	11	1	9	1	32
ASE_00080	RNaseP_bact_a links to Rfam database...	0.37	0.24	0.58	30	71579	22	0	22	0	93
ASE_00081	RNaseP_bact_a links to Rfam database...	0.51	0.31	0.86	30	49735	6	0	5	1	67
ASE_00082	RNaseP_bact_a links to Rfam database...	0.56	0.39	0.82	45	70445	17	0	10	7	71
ASE_00083	RNaseP_bact_a links to Rfam database...	0.50	0.27	0.91	30	62448	4	0	3	1	80
ASE_00084	RNaseP_bact_a links to Rfam database...	0.49	0.34	0.69	34	53579	15	0	15	0	65
ASE_00087	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.79	30	88372	8	0	8	0	114
ASE_00090	RNaseP_bact_a links to Rfam database...	0.46	0.33	0.66	33	55561	18	0	17	1	68
ASE_00092	RNaseP_bact_a links to Rfam database...	0.55	0.37	0.81	42	63494	11	0	10	1	71
ASE_00099	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	48	64557	17	0	15	2	72
ASE_00104	RNaseP_bact_a links to Rfam database...	0.47	0.30	0.73	36	64212	14	0	13	1	83
ASE_00105	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.78	25	64229	7	1	6	0	86
ASE_00107	RNaseP_bact_a links to Rfam database...	0.62	0.45	0.85	57	73086	10	0	10	0	70
ASE_00115	RNaseP_bact_a links to Rfam database...	0.51	0.29	0.91	29	54583	4	0	3	1	72
ASE_00118	RNaseP_bact_a links to Rfam database...	0.65	0.48	0.88	49	60670	9	1	6	2	53
ASE_00119	RNaseP_bact_a links to Rfam database...	0.44	0.29	0.67	31	62789	17	3	12	2	77
ASE_00123	RNaseP_bact_a links to Rfam database...	0.45	0.28	0.71	24	38469	14	0	10	4	61
ASE_00125	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	35	39294	12	1	10	1	53
ASE_00126	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	46	40411	14	0	13	1	36
ASE_00128	RNaseP_bact_a links to Rfam database...	0.51	0.29	0.91	29	53269	4	0	3	1	71
ASE_00129	RNaseP_bact_a links to Rfam database...	0.51	0.27	0.97	30	62804	1	0	1	0	81
ASE_00131	RNaseP_bact_a links to Rfam database...	0.53	0.34	0.83	29	39305	7	0	6	1	56
ASE_00134	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.82	46	50347	11	0	10	1	49
ASE_00135	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.65	37	63133	20	1	19	0	72
ASE_00136	RNaseP_bact_a links to Rfam database...	0.63	0.50	0.81	46	48148	13	0	11	2	46
ASE_00137	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.89	49	48461	7	2	4	1	49
ASE_00138	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.86	51	40411	9	1	7	1	30
ASE_00140	RNaseP_bact_a links to Rfam database...	0.35	0.18	0.69	22	70844	11	0	10	1	103
ASE_00142	RNaseP_bact_a links to Rfam database...	0.46	0.22	0.96	27	67133	3	0	1	2	95
ASE_00146	RNaseP_bact_a links to Rfam database...	0.52	0.38	0.70	47	70809	20	1	19	0	77
ASE_00153	RNaseP_nuc links to Rfam database...	0.09	0.05	0.16	4	57605	39	5	16	18	69
ASE_00163	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.83	50	53241	10	1	9	0	43
ASE_00165	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.97	31	52943	1	0	1	0	70
ASE_00170	RNaseP_bact_a links to Rfam database...	0.52	0.32	0.83	30	48792	8	0	6	2	63
ASE_00171	RNaseP_bact_a links to Rfam database...	0.64	0.48	0.85	45	48463	9	1	7	1	49
ASE_00172	RNaseP_bact_a links to Rfam database...	0.53	0.38	0.74	40	58942	15	1	13	1	66
ASE_00174	RNaseP_bact_a links to Rfam database...	0.39	0.19	0.81	21	61049	5	2	3	0	88
ASE_00175	RNaseP_bact_a links to Rfam database...	0.46	0.32	0.65	34	59979	18	0	18	0	73
ASE_00179	RNaseP_bact_a links to Rfam database...	0.55	0.45	0.67	38	44196	19	3	16	0	46
ASE_00180	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	57	51292	11	0	11	0	43
ASE_00181	RNaseP_bact_a links to Rfam database...	0.50	0.30	0.82	32	57591	8	0	7	1	74
ASE_00182	RNaseP_bact_a links to Rfam database...	0.40	0.26	0.64	35	84200	20	1	19	0	101
ASE_00183	RNaseP_bact_a links to Rfam database...	0.42	0.26	0.67	29	61382	14	0	14	0	84
ASE_00184	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.86	48	54559	8	1	7	0	54
ASE_00185	RNaseP_bact_a links to Rfam database...	0.35	0.18	0.70	23	73503	10	0	10	0	105
ASE_00186	RNaseP_bact_a links to Rfam database...	0.44	0.27	0.71	36	78952	15	0	15	0	96
ASE_00190	RNaseP_bact_b links to Rfam database...	0.32	0.18	0.57	16	45423	13	1	11	1	74
ASE_00197	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.78	38	89204	11	0	11	0	107
ASE_00198	RNaseP_bact_a links to Rfam database...	0.62	0.46	0.84	47	52594	9	1	8	0	55
ASE_00203	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.79	23	46636	6	2	4	0	73
ASE_00214	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.81	48	56221	13	0	11	2	55
ASE_00215	RNaseP_bact_a links to Rfam database...	0.42	0.27	0.66	27	48475	15	0	14	1	72
ASE_00216	RNaseP_bact_a links to Rfam database...	0.72	0.60	0.86	49	39283	8	5	3	0	33
ASE_00217	RNaseP_bact_a links to Rfam database...	0.54	0.38	0.77	34	40426	12	0	10	2	56
ASE_00221	RNaseP_bact_a links to Rfam database...	0.56	0.38	0.80	45	64564	11	1	10	0	72
ASE_00228	RNaseP_bact_a links to Rfam database...	0.41	0.24	0.70	21	46941	10	2	7	1	65
ASE_00229	RNaseP_bact_a links to Rfam database...	0.57	0.44	0.75	38	42435	14	0	13	1	49
ASE_00231	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.83	43	47843	9	2	7	0	53
ASE_00232	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	47	38443	13	4	9	0	37
ASE_00234	RNaseP_bact_a links to Rfam database...	0.45	0.27	0.74	35	75419	12	1	11	0	94
ASE_00238	RNaseP_bact_a links to Rfam database...	0.46	0.22	0.96	25	64235	1	0	1	0	89
ASE_00241	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	59	43889	8	0	8	0	28
ASE_00242	RNaseP_bact_a links to Rfam database...	0.58	0.41	0.81	46	61018	13	1	10	2	66
ASE_00248	RNaseP_bact_a links to Rfam database...	0.56	0.39	0.80	44	62426	11	1	10	0	70
ASE_00254	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.76	45	36797	14	3	11	0	37
ASE_00255	RNaseP_bact_a links to Rfam database...	0.42	0.22	0.82	28	74657	6	1	5	0	102
ASE_00257	RNaseP_bact_a links to Rfam database...	0.51	0.36	0.73	35	50992	14	0	13	1	62
ASE_00263	RNaseP_bact_a links to Rfam database...	0.50	0.33	0.78	39	70450	12	0	11	1	81
ASE_00267	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.82	41	45100	10	0	9	1	47
ASE_00270	RNaseP_bact_a links to Rfam database...	0.47	0.27	0.80	35	72346	9	0	9	0	93
ASE_00274	RNaseP_bact_a links to Rfam database...	0.56	0.42	0.75	43	55554	14	1	13	0	60
ASE_00277	RNaseP_bact_a links to Rfam database...	0.49	0.27	0.89	25	48177	3	0	3	0	66
ASE_00279	RNaseP_bact_a links to Rfam database...	0.50	0.27	0.93	27	53272	2	0	2	0	74
ASE_00280	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.67	29	51960	15	0	14	1	69
ASE_00281	RNaseP_bact_a links to Rfam database...	0.49	0.30	0.81	26	44519	6	0	6	0	62
ASE_00282	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.68	38	77759	18	1	17	0	89
ASE_00283	RNaseP_bact_a links to Rfam database...	0.46	0.26	0.82	28	61742	8	0	6	2	79
ASE_00284	RNaseP_bact_a links to Rfam database...	0.41	0.24	0.70	26	58274	11	0	11	0	82
ASE_00285	RNaseP_bact_a links to Rfam database...	0.43	0.22	0.82	27	68973	6	0	6	0	95
ASE_00286	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.85	47	46610	9	0	8	1	45
ASE_00287	RNaseP_bact_a links to Rfam database...	0.44	0.31	0.63	32	54895	20	1	18	1	71
ASE_00292	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.72	48	81743	19	0	19	0	90
ASE_00296	RNaseP_bact_a links to Rfam database...	0.35	0.18	0.67	26	91767	13	0	13	0	119
ASE_00297	RNaseP_bact_a links to Rfam database...	0.40	0.24	0.65	24	52938	14	0	13	1	74
ASE_00298	RNaseP_bact_a links to Rfam database...	0.54	0.38	0.75	43	67471	14	1	13	0	70
ASE_00318	RNaseP_bact_b links to Rfam database...	0.49	0.31	0.80	36	80155	10	3	6	1	82
ASE_00328	RNaseP_bact_b links to Rfam database...	0.48	0.34	0.69	38	72716	20	4	13	3	74
ASE_00332	RNaseP_bact_a links to Rfam database...	0.41	0.20	0.87	27	81779	4	0	4	0	111
ASE_00335	RNaseP_bact_b links to Rfam database...	0.46	0.32	0.67	37	75411	19	2	16	1	79
ASE_00340	RNaseP_bact_a links to Rfam database...	0.47	0.36	0.62	31	46006	19	5	14	0	54
ASE_00342	RNaseP_bact_a links to Rfam database...	0.57	0.41	0.81	47	62423	13	0	11	2	68
ASE_00353	RNaseP_bact_a links to Rfam database...	0.52	0.39	0.68	42	57908	21	1	19	1	65
ASE_00361	RNaseP_bact_a links to Rfam database...	0.40	0.21	0.75	27	75430	10	1	8	1	100
ASE_00362	RNaseP_bact_a links to Rfam database...	0.52	0.41	0.66	37	48149	19	0	19	0	54
ASE_00363	RNaseP_bact_a links to Rfam database...	0.48	0.30	0.78	28	51324	9	4	4	1	66
ASE_00364	RNaseP_bact_a links to Rfam database...	0.43	0.25	0.76	26	54251	8	0	8	0	79
ASE_00366	RNaseP_bact_a links to Rfam database...	0.43	0.33	0.56	32	58596	25	3	22	0	66
ASE_00367	RNaseP_bact_a links to Rfam database...	0.50	0.30	0.84	26	43040	5	0	5	0	60
ASE_00369	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.79	41	55893	11	0	11	0	66
ASE_00370	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.83	48	41847	11	1	9	1	36
ASE_00372	RNaseP_bact_a links to Rfam database...	0.60	0.43	0.84	43	51952	8	0	8	0	57
ASE_00374	RNaseP_bact_a links to Rfam database...	0.52	0.32	0.85	28	44817	6	0	5	1	60
ASE_00376	RNaseP_bact_a links to Rfam database...	0.42	0.25	0.70	26	56916	11	0	11	0	79
ASE_00377	RNaseP_bact_a links to Rfam database...	0.43	0.25	0.75	27	57594	10	0	9	1	80
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.44	0.83	39	46009	9	0	8	1	50
ASE_00382	RNaseP_bact_a links to Rfam database...	0.64	0.51	0.81	43	41852	11	1	9	1	41
ASE_00383	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.78	40	54564	11	1	10	0	65
ASE_00384	RNaseP_bact_a links to Rfam database...	0.49	0.28	0.87	26	48486	5	0	4	1	66
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.94	30	50371	3	0	2	1	66
ASE_00387	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.75	24	55913	9	0	8	1	80
ASE_00388	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.84	49	45695	10	1	8	1	40
ASE_00390	RNaseP_bact_a links to Rfam database...	0.55	0.33	0.93	28	42165	3	0	2	1	57
ASE_00393	RNaseP_bact_a links to Rfam database...	0.58	0.45	0.74	42	47838	15	1	14	0	51
ASE_00394	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.94	29	46940	3	0	2	1	64
ASE_00395	RNaseP_bact_a links to Rfam database...	0.61	0.48	0.78	40	41565	11	0	11	0	44
ASE_00396	RNaseP_bact_a links to Rfam database...	0.56	0.34	0.93	28	41586	3	0	2	1	55
ASE_00397	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.78	40	54564	12	0	11	1	65
ASE_00398	RNaseP_bact_a links to Rfam database...	0.44	0.23	0.86	24	55917	5	0	4	1	80
ASE_00400	RNaseP_bact_a links to Rfam database...	0.58	0.43	0.78	46	57911	13	1	12	0	60
ASE_00401	RNaseP_bact_a links to Rfam database...	0.43	0.21	0.90	26	76999	4	0	3	1	100
ASE_00402	RNaseP_bact_a links to Rfam database...	0.54	0.36	0.79	31	42447	8	0	8	0	54
ASE_00403	RNaseP_bact_a links to Rfam database...	0.61	0.42	0.88	45	55894	6	1	5	0	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.83	48	43013	10	1	9	0	37
ASE_00406	RNaseP_bact_a links to Rfam database...	0.59	0.41	0.85	39	48782	9	0	7	2	55
ASE_00411	RNaseP_bact_a links to Rfam database...	0.44	0.33	0.59	29	49406	20	1	19	0	60
ASE_00412	RNaseP_bact_a links to Rfam database...	0.53	0.36	0.79	38	58263	11	0	10	1	67
ASE_00413	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.70	30	44508	14	3	10	1	51
ASE_00415	RNaseP_bact_a links to Rfam database...	0.39	0.20	0.75	21	54918	8	0	7	1	82
ASE_00416	RNaseP_bact_a links to Rfam database...	0.42	0.21	0.82	27	77388	7	0	6	1	100
ASE_00419	RNaseP_bact_a links to Rfam database...	0.55	0.41	0.75	42	54890	14	2	12	0	61
ASE_00422	RNaseP_bact_a links to Rfam database...	0.57	0.40	0.79	38	46923	11	0	10	1	56
ASE_00423	RNaseP_bact_a links to Rfam database...	0.39	0.24	0.63	26	56912	15	0	15	0	83
ASE_00428	RNaseP_bact_a links to Rfam database...	0.56	0.40	0.79	50	76573	13	1	12	0	75
ASE_00430	RNaseP_bact_a links to Rfam database...	0.46	0.25	0.86	24	46943	4	0	4	0	73
ASE_00437	RNaseP_bact_a links to Rfam database...	0.58	0.39	0.87	53	79340	8	0	8	0	82
ASE_00441	RNaseP_bact_a links to Rfam database...	0.53	0.36	0.80	40	64211	11	1	9	1	72
ASE_00448	RNaseP_bact_a links to Rfam database...	0.51	0.33	0.79	37	64214	11	0	10	1	75
ASE_00451	RNaseP_bact_a links to Rfam database...	0.54	0.35	0.83	44	70823	10	1	8	1	81
TMR_00017	tmRNA links to Rfam database...	0.44	0.23	0.85	23	67134	8	0	4	4	79
TMR_00018	tmRNA links to Rfam database...	0.29	0.13	0.67	12	64602	10	0	6	4	80
TMR_00038	tmRNA links to Rfam database...	0.49	0.25	0.93	28	71223	4	1	1	2	82
TMR_00042	tmRNA links to Rfam database...	0.22	0.12	0.40	12	62805	21	0	18	3	86
TMR_00046	tmRNA links to Rfam database...	0.31	0.22	0.44	21	62787	30	4	23	3	75
TMR_00048	tmRNA links to Rfam database...	0.28	0.20	0.40	19	64933	33	5	23	5	76
TMR_00080	tmRNA links to Rfam database...	0.47	0.29	0.76	28	70463	9	0	9	0	68
TMR_00082	tmRNA links to Rfam database...	0.44	0.30	0.63	29	67850	21	1	16	4	67
TMR_00123	tmRNA links to Rfam database...	0.41	0.22	0.76	22	66401	12	0	7	5	79
TMR_00137	tmRNA links to Rfam database...	0.33	0.20	0.55	18	61042	21	2	13	6	71
TMR_00142	tmRNA links to Rfam database...	0.12	0.07	0.21	7	70843	33	8	18	7	95
TMR_00207	tmRNA links to Rfam database...	0.32	0.18	0.54	19	72355	16	6	10	0	84
TMR_00257	tmRNA links to Rfam database...	0.46	0.29	0.76	28	67124	14	0	9	5	70
TMR_00271	tmRNA links to Rfam database...	0.28	0.14	0.57	13	64238	15	1	9	5	78
TMR_00332	tmRNA links to Rfam database...	0.40	0.22	0.71	22	67130	14	0	9	5	77
TMR_00366	tmRNA links to Rfam database...	0.32	0.17	0.59	17	67867	23	3	9	11	83
TMR_00378	tmRNA links to Rfam database...	0.32	0.18	0.59	17	67867	23	3	9	11	80
TMR_00399	tmRNA links to Rfam database...	0.18	0.09	0.36	8	64958	14	7	7	0	86
TMR_00404	tmRNA links to Rfam database...	0.21	0.11	0.42	10	67504	25	4	10	11	82
TMR_00427	tmRNA links to Rfam database...	0.55	0.32	0.94	31	67495	7	0	2	5	66
TMR_00443	tmRNA links to Rfam database...	0.41	0.27	0.64	28	67117	20	1	15	4	76
TMR_00451	tmRNA links to Rfam database...	0.17	0.11	0.25	10	63506	34	6	24	4	79
TMR_00458	tmRNA links to Rfam database...	0.18	0.09	0.38	8	63525	16	1	12	3	85
TMR_00469	tmRNA links to Rfam database...	0.50	0.31	0.79	31	64581	12	1	7	4	69
TMR_00472	tmRNA links to Rfam database...	0.50	0.30	0.83	29	64585	10	1	5	4	68
TMR_00519	tmRNA links to Rfam database...	0.28	0.18	0.44	17	63151	27	2	20	5	78
TMR_00520	tmRNA links to Rfam database...	0.34	0.19	0.59	19	63158	13	4	9	0	80
TMR_00522	tmRNA links to Rfam database...	0.38	0.20	0.73	19	63164	7	1	6	0	78
TMR_00528	tmRNA links to Rfam database...	0.40	0.23	0.71	22	63159	13	2	7	4	75
TMR_00540	tmRNA links to Rfam database...	0.30	0.18	0.50	19	73498	24	2	17	5	85
TMR_00568	tmRNA links to Rfam database...	0.33	0.17	0.65	17	60700	14	0	9	5	82
TMR_00571	tmRNA links to Rfam database...	0.37	0.19	0.70	19	60699	13	0	8	5	80
TMR_00580	tmRNA links to Rfam database...	0.35	0.19	0.66	19	60697	15	2	8	5	81
TMR_00584	tmRNA links to Rfam database...	0.31	0.15	0.63	15	61051	15	1	8	6	82
TMR_00586	tmRNA links to Rfam database...	0.36	0.20	0.68	19	61047	14	1	8	5	78
TMR_00616	tmRNA links to Rfam database...	0.46	0.28	0.76	28	67124	12	3	6	3	71
TMR_00699	tmRNA links to Rfam database...	0.32	0.17	0.61	17	67133	12	3	8	1	85
TMR_00702	tmRNA links to Rfam database...	0.42	0.24	0.73	24	67128	10	3	6	1	76
TMR_00703	tmRNA links to Rfam database...	0.52	0.35	0.78	35	67483	15	1	9	5	64

^top

Performance of Vsfold5 - scored lower in this pairwise comparison

1. Total counts & total scores for Vsfold5

Total Base Pair Counts
Total TP	6930
Total TN	11602937
Total FP	10981
Total FP CONTRA	1125
Total FP INCONS	9280
Total FP COMP	576
Total FN	13358

Total Scores
MCC	0.369
Average MCC ± 95% Confidence Intervals	0.362 ± 0.020
Sensitivity	0.342
Positive Predictive Value	0.400
Nr of predictions	196

^top

2. Individual counts for Vsfold5 [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.35	31	47807	58	8	49	1	66
ASE_00005	RNaseP_bact_a links to Rfam database...	0.41	0.37	0.46	43	57877	54	0	50	4	74
ASE_00006	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.45	37	47504	46	4	41	1	56
ASE_00007	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.41	37	59595	57	2	51	4	73
ASE_00012	RNaseP_bact_a links to Rfam database...	0.39	0.36	0.42	44	73815	66	10	51	5	79
ASE_00018	RNaseP_bact_a links to Rfam database...	0.44	0.39	0.50	52	80497	52	2	50	0	82
ASE_00020	RNaseP_bact_a links to Rfam database...	0.21	0.19	0.24	24	73818	80	5	73	2	102
ASE_00022	RNaseP_bact_b links to Rfam database...	0.36	0.32	0.41	40	82930	60	4	54	2	84
ASE_00028	RNaseP_bact_b links to Rfam database...	0.37	0.35	0.40	44	84557	66	4	61	1	82
ASE_00035	RNaseP_bact_a links to Rfam database...	0.21	0.20	0.23	24	70394	82	8	74	0	94
ASE_00037	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59340	0	0	0	0	110
ASE_00038	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.53	47	53539	43	2	40	1	54
ASE_00040	RNaseP_bact_a links to Rfam database...	0.25	0.23	0.27	30	78892	83	5	76	2	103
ASE_00041	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.45	42	57537	51	6	45	0	66
ASE_00044	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	47	54519	50	6	43	1	58
ASE_00064	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.40	33	45369	55	1	48	6	56
ASE_00068	RNaseP_bact_a links to Rfam database...	0.44	0.40	0.49	34	37605	39	2	34	3	51
ASE_00074	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.43	44	67793	61	0	59	2	75
ASE_00077	RNaseP_bact_a links to Rfam database...	0.33	0.31	0.34	27	45071	56	4	48	4	59
ASE_00078	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.33	25	42996	55	2	48	5	58
ASE_00080	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.38	39	71529	63	4	59	0	84
ASE_00081	RNaseP_bact_a links to Rfam database...	0.39	0.35	0.43	34	49691	45	1	44	0	63
ASE_00082	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	48	70397	63	5	50	8	68
ASE_00083	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.67	63	62387	35	5	26	4	47
ASE_00084	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.49	44	53539	50	3	42	5	55
ASE_00087	RNaseP_bact_a links to Rfam database...	0.45	0.39	0.51	56	88301	57	3	50	4	88
ASE_00090	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.52	50	55514	50	4	43	3	51
ASE_00092	RNaseP_bact_a links to Rfam database...	0.41	0.38	0.44	43	63448	55	8	47	0	70
ASE_00099	RNaseP_bact_a links to Rfam database...	0.46	0.42	0.52	50	64523	48	2	45	1	70
ASE_00104	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.62	64	64158	40	3	36	1	55
ASE_00105	RNaseP_bact_a links to Rfam database...	0.31	0.29	0.33	32	64164	67	6	59	2	79
ASE_00107	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.47	50	73046	57	5	52	0	77
ASE_00115	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.52	48	54522	53	3	42	8	53
ASE_00118	RNaseP_bact_a links to Rfam database...	0.38	0.35	0.40	36	60637	54	4	49	1	66
ASE_00119	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.75	73	62738	28	6	18	4	35
ASE_00123	RNaseP_bact_a links to Rfam database...	0.38	0.36	0.39	31	38424	52	3	45	4	54
ASE_00125	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.44	36	39259	45	5	40	0	52
ASE_00126	RNaseP_bact_a links to Rfam database...	0.48	0.44	0.53	36	40402	36	2	30	4	46
ASE_00128	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	51	53211	43	3	36	4	49
ASE_00129	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.66	63	62740	33	7	25	1	48
ASE_00131	RNaseP_bact_a links to Rfam database...	0.42	0.38	0.46	32	39271	42	4	33	5	53
ASE_00134	RNaseP_bact_a links to Rfam database...	0.28	0.26	0.30	25	50320	62	6	52	4	70
ASE_00135	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.38	35	63097	63	3	55	5	74
ASE_00136	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.71	57	48125	31	3	20	8	35
ASE_00137	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.58	52	48427	38	1	36	1	46
ASE_00138	RNaseP_bact_a links to Rfam database...	0.45	0.43	0.47	35	40395	42	5	35	2	46
ASE_00140	RNaseP_bact_a links to Rfam database...	0.46	0.42	0.50	53	70771	52	3	49	0	72
ASE_00142	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.46	50	67053	58	7	51	0	72
ASE_00146	RNaseP_bact_a links to Rfam database...	0.32	0.28	0.37	35	70782	61	1	58	2	89
ASE_00153	RNaseP_nuc links to Rfam database...	0.28	0.32	0.26	23	57540	91	12	55	24	50
ASE_00163	RNaseP_bact_a links to Rfam database...	0.37	0.37	0.38	34	53211	63	7	49	7	59
ASE_00165	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.44	40	52884	51	4	47	0	61
ASE_00170	RNaseP_bact_a links to Rfam database...	0.40	0.40	0.41	37	48737	54	10	44	0	56
ASE_00171	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.58	43	48442	35	5	26	4	51
ASE_00172	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.51	49	58900	47	8	39	0	57
ASE_00174	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.51	50	60977	48	1	47	0	59
ASE_00175	RNaseP_bact_a links to Rfam database...	0.35	0.34	0.36	36	59932	65	3	60	2	71
ASE_00179	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.53	45	44168	41	10	30	1	39
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51360	0	0	0	0	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	54	57539	41	2	35	4	52
ASE_00182	RNaseP_bact_a links to Rfam database...	0.38	0.34	0.43	46	84149	60	5	55	0	90
ASE_00183	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	57	61323	47	4	41	2	56
ASE_00184	RNaseP_bact_a links to Rfam database...	0.41	0.38	0.44	39	54526	55	1	49	5	63
ASE_00185	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.40	45	73423	68	6	62	0	83
ASE_00186	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.39	45	78888	72	6	64	2	87
ASE_00190	RNaseP_bact_b links to Rfam database...	0.37	0.32	0.43	29	45384	42	2	36	4	61
ASE_00197	RNaseP_bact_a links to Rfam database...	0.27	0.25	0.30	36	89132	87	7	78	2	109
ASE_00198	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.45	41	52558	56	1	50	5	61
ASE_00203	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46665	0	0	0	0	96
ASE_00214	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	57	56183	47	3	37	7	46
ASE_00215	RNaseP_bact_a links to Rfam database...	0.49	0.43	0.57	43	48440	37	6	27	4	56
ASE_00216	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.66	50	39264	27	4	22	1	32
ASE_00217	RNaseP_bact_a links to Rfam database...	0.13	0.12	0.14	11	40394	67	2	63	2	79
ASE_00221	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.43	43	64520	57	5	52	0	74
ASE_00228	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.49	40	46890	41	13	28	0	46
ASE_00229	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.54	43	42407	36	8	28	0	44
ASE_00231	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	55	47806	34	3	31	0	41
ASE_00232	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.44	36	38422	45	7	38	0	48
ASE_00234	RNaseP_bact_a links to Rfam database...	0.27	0.24	0.31	31	75367	68	4	64	0	98
ASE_00238	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	32	64162	67	7	60	0	82
ASE_00241	RNaseP_bact_a links to Rfam database...	0.35	0.33	0.38	29	43879	52	0	48	4	58
ASE_00242	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	48	60969	58	11	47	0	64
ASE_00248	RNaseP_bact_a links to Rfam database...	0.45	0.43	0.48	49	62378	57	4	50	3	65
ASE_00254	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.33	25	36781	55	4	46	5	57
ASE_00255	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.38	42	74579	70	12	58	0	88
ASE_00257	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	50	50955	35	5	30	0	47
ASE_00263	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.39	41	70396	63	6	57	0	79
ASE_00267	RNaseP_bact_a links to Rfam database...	0.24	0.23	0.25	20	45070	64	6	54	4	68
ASE_00270	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.38	45	72273	73	4	68	1	83
ASE_00274	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.39	35	55522	54	8	46	0	68
ASE_00277	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.31	26	48122	57	13	44	0	65
ASE_00279	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.34	30	53214	57	6	51	0	71
ASE_00280	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	38	51921	45	6	38	1	60
ASE_00281	RNaseP_bact_a links to Rfam database...	0.45	0.40	0.52	35	44484	37	3	29	5	53
ASE_00282	RNaseP_bact_a links to Rfam database...	0.48	0.43	0.53	55	77711	55	3	46	6	72
ASE_00283	RNaseP_bact_a links to Rfam database...	0.46	0.43	0.49	46	61683	47	10	37	0	61
ASE_00284	RNaseP_bact_a links to Rfam database...	0.27	0.26	0.28	28	58211	73	7	65	1	80
ASE_00285	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.44	45	68903	58	1	57	0	77
ASE_00286	RNaseP_bact_a links to Rfam database...	0.38	0.36	0.41	33	46584	50	4	44	2	59
ASE_00287	RNaseP_bact_a links to Rfam database...	0.39	0.34	0.45	35	54868	45	1	42	2	68
ASE_00292	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	81810	0	0	0	0	138
ASE_00296	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.41	50	91683	73	5	68	0	95
ASE_00297	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	43	52878	54	2	52	0	55
ASE_00298	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.44	42	67432	57	4	50	3	71
ASE_00318	RNaseP_bact_b links to Rfam database...	0.37	0.35	0.40	41	80098	66	10	51	5	77
ASE_00328	RNaseP_bact_b links to Rfam database...	0.37	0.35	0.39	39	72671	67	4	57	6	73
ASE_00332	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	61	81684	66	10	55	1	77
ASE_00335	RNaseP_bact_b links to Rfam database...	0.39	0.36	0.43	42	75368	61	6	50	5	74
ASE_00340	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.62	47	45980	29	13	16	0	38
ASE_00342	RNaseP_bact_a links to Rfam database...	0.39	0.35	0.43	40	62388	54	0	53	1	75
ASE_00353	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	61	57870	39	6	33	0	46
ASE_00361	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.38	41	75357	68	9	59	0	86
ASE_00362	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.51	42	48122	41	6	35	0	49
ASE_00363	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.43	39	51269	58	2	50	6	55
ASE_00364	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.33	31	54190	65	4	60	1	74
ASE_00366	RNaseP_bact_a links to Rfam database...	0.35	0.35	0.35	34	58556	66	14	49	3	64
ASE_00367	RNaseP_bact_a links to Rfam database...	0.26	0.24	0.27	21	42994	60	3	53	4	65
ASE_00369	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.38	38	55846	66	0	61	5	69
ASE_00370	RNaseP_bact_a links to Rfam database...	0.41	0.38	0.44	32	41833	47	1	39	7	52
ASE_00372	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.48	42	51915	48	6	40	2	58
ASE_00374	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	37	44770	43	6	37	0	51
ASE_00376	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.48	44	56861	52	4	44	4	61
ASE_00377	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	60	57537	37	2	31	4	47
ASE_00379	RNaseP_bact_a links to Rfam database...	0.36	0.36	0.37	32	45969	57	11	44	2	57
ASE_00382	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	35	41831	43	0	39	4	49
ASE_00383	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	43	54524	50	8	40	2	62
ASE_00384	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.54	43	48437	44	2	34	8	49
ASE_00386	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.44	36	50321	51	8	38	5	60
ASE_00387	RNaseP_bact_a links to Rfam database...	0.54	0.49	0.59	51	55858	39	4	32	3	53
ASE_00388	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.54	42	45675	41	2	34	5	47
ASE_00390	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.54	39	42123	38	2	31	5	46
ASE_00393	RNaseP_bact_a links to Rfam database...	0.45	0.43	0.48	40	47811	49	1	43	5	53
ASE_00394	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.35	28	46890	53	9	44	0	65
ASE_00395	RNaseP_bact_a links to Rfam database...	0.45	0.43	0.48	36	41541	43	5	34	4	48
ASE_00396	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.45	35	41539	44	7	35	2	48
ASE_00397	RNaseP_bact_a links to Rfam database...	0.35	0.33	0.38	35	54523	58	1	56	1	70
ASE_00398	RNaseP_bact_a links to Rfam database...	0.48	0.44	0.52	46	55857	46	2	40	4	58
ASE_00400	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.56	52	57877	45	5	36	4	54
ASE_00401	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.39	44	76914	70	6	64	0	82
ASE_00402	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.33	24	42413	49	5	44	0	61
ASE_00403	RNaseP_bact_a links to Rfam database...	0.35	0.33	0.38	35	55853	62	5	52	5	72
ASE_00404	RNaseP_bact_a links to Rfam database...	0.26	0.25	0.28	21	42996	58	4	50	4	64
ASE_00406	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.51	42	48745	47	0	41	6	52
ASE_00411	RNaseP_bact_a links to Rfam database...	0.34	0.34	0.34	30	49367	60	7	51	2	59
ASE_00412	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.36	31	58224	56	7	49	0	74
ASE_00413	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.46	36	44473	46	4	38	4	45
ASE_00415	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	39	54854	56	4	49	3	64
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77421	0	0	0	0	127
ASE_00419	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.65	60	54853	34	3	30	1	43
ASE_00422	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.58	49	46886	41	2	34	5	45
ASE_00423	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.51	56	56844	53	11	42	0	53
ASE_00428	RNaseP_bact_a links to Rfam database...	0.24	0.24	0.25	30	76515	91	2	89	0	95
ASE_00430	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	56	46886	34	2	27	5	41
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79401	0	0	0	0	135
ASE_00441	RNaseP_bact_a links to Rfam database...	0.33	0.30	0.35	34	64164	63	6	57	0	78
ASE_00448	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.39	38	64164	59	4	55	0	74
ASE_00451	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.38	40	70771	65	2	63	0	85
TMR_00017	tmRNA links to Rfam database...	0.29	0.28	0.29	29	67062	74	8	62	4	73
TMR_00018	tmRNA links to Rfam database...	0.27	0.27	0.27	25	64528	72	10	57	5	67
TMR_00038	tmRNA links to Rfam database...	0.19	0.18	0.19	20	71149	91	11	73	7	90
TMR_00042	tmRNA links to Rfam database...	0.15	0.15	0.15	15	62738	86	16	66	4	83
TMR_00046	tmRNA links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	96
TMR_00048	tmRNA links to Rfam database...	0.25	0.26	0.25	25	64879	82	15	61	6	70
TMR_00080	tmRNA links to Rfam database...	0.35	0.38	0.32	36	70388	76	16	60	0	60
TMR_00082	tmRNA links to Rfam database...	0.39	0.40	0.38	38	67796	62	11	51	0	58
TMR_00123	tmRNA links to Rfam database...	0.28	0.28	0.29	28	66332	75	9	61	5	73
TMR_00137	tmRNA links to Rfam database...	0.15	0.15	0.15	13	60990	82	6	66	10	76
TMR_00142	tmRNA links to Rfam database...	0.16	0.17	0.15	17	70764	98	20	75	3	85
TMR_00207	tmRNA links to Rfam database...	0.16	0.17	0.17	17	72287	91	9	77	5	86
TMR_00257	tmRNA links to Rfam database...	0.17	0.16	0.18	16	67070	80	6	69	5	82
TMR_00271	tmRNA links to Rfam database...	0.17	0.18	0.17	16	64166	88	15	64	9	75
TMR_00332	tmRNA links to Rfam database...	0.16	0.15	0.16	15	67068	83	6	72	5	84
TMR_00366	tmRNA links to Rfam database...	0.26	0.26	0.26	26	67796	80	13	61	6	74
TMR_00378	tmRNA links to Rfam database...	0.11	0.11	0.10	11	67790	100	15	80	5	86
TMR_00399	tmRNA links to Rfam database...	0.14	0.14	0.14	13	64884	86	17	66	3	81
TMR_00404	tmRNA links to Rfam database...	0.26	0.27	0.25	25	67428	83	15	60	8	67
TMR_00427	tmRNA links to Rfam database...	0.00	0.00	0.00	0	67528	0	0	0	0	97
TMR_00443	tmRNA links to Rfam database...	0.15	0.14	0.16	15	67066	84	8	72	4	89
TMR_00451	tmRNA links to Rfam database...	0.37	0.38	0.36	34	63451	65	16	45	4	55
TMR_00458	tmRNA links to Rfam database...	0.14	0.14	0.14	13	63451	89	13	69	7	80
TMR_00469	tmRNA links to Rfam database...	0.12	0.12	0.12	12	64521	92	8	79	5	88
TMR_00472	tmRNA links to Rfam database...	0.27	0.28	0.27	27	64520	80	4	69	7	70
TMR_00519	tmRNA links to Rfam database...	0.12	0.12	0.13	11	63107	82	11	61	10	84
TMR_00520	tmRNA links to Rfam database...	0.26	0.27	0.25	27	63084	79	13	66	0	72
TMR_00522	tmRNA links to Rfam database...	0.17	0.16	0.17	16	63096	83	17	61	5	81
TMR_00528	tmRNA links to Rfam database...	0.31	0.31	0.31	30	63092	73	16	52	5	67
TMR_00540	tmRNA links to Rfam database...	0.17	0.16	0.17	17	73438	89	10	71	8	87
TMR_00568	tmRNA links to Rfam database...	0.16	0.15	0.17	15	60636	81	3	72	6	84
TMR_00571	tmRNA links to Rfam database...	0.00	0.00	0.00	0	60726	0	0	0	0	99
TMR_00580	tmRNA links to Rfam database...	0.23	0.23	0.24	23	60629	80	8	66	6	77
TMR_00584	tmRNA links to Rfam database...	0.18	0.19	0.18	18	60977	85	11	69	5	79
TMR_00586	tmRNA links to Rfam database...	0.16	0.15	0.16	15	60984	85	11	65	9	82
TMR_00616	tmRNA links to Rfam database...	0.32	0.31	0.32	31	67064	72	11	55	6	68
TMR_00699	tmRNA links to Rfam database...	0.28	0.28	0.27	29	67054	82	14	64	4	73
TMR_00702	tmRNA links to Rfam database...	0.26	0.25	0.28	25	67072	71	8	56	7	75
TMR_00703	tmRNA links to Rfam database...	0.33	0.31	0.34	31	67437	67	7	53	7	68

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of CMfinder(20) - scored higher in this pairwise comparison

1. Total counts & total scores for CMfinder(20)

2. Individual counts for CMfinder(20) [ download as .csv ]

Performance of Vsfold5 - scored lower in this pairwise comparison

1. Total counts & total scores for Vsfold5

2. Individual counts for Vsfold5 [ download as .csv ]