CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	CentroidFold		Contrafold
MCC	0.571	>	0.554
Average MCC ± 95% Confidence Intervals	0.566 ± 0.013	>	0.550 ± 0.014
Sensitivity	0.516	<	0.540
Positive Predictive Value	0.635	>	0.569
Total TP	32419	<	33968
Total TN	43348249	>	43339624
Total FP	23303	<	31952
Total FP CONTRA	3396	<	4632
Total FP INCONS	15273	<	21113
Total FP COMP	4634	<	6207
Total FN	30456	>	28907
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of CentroidFold and Contrafold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for CentroidFold and Contrafold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for CentroidFold and Contrafold).
Comparison of average Matthews Correlation Coefficients (MCCs) for CentroidFold and Contrafold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for CentroidFold and Contrafold).

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Performance of CentroidFold - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidFold

Total Base Pair Counts
Total TP	32419
Total TN	43348249
Total FP	23303
Total FP CONTRA	3396
Total FP INCONS	15273
Total FP COMP	4634
Total FN	30456

Total Scores
MCC	0.571
Average MCC ± 95% Confidence Intervals	0.566 ± 0.013
Sensitivity	0.516
Positive Predictive Value	0.635
Nr of predictions	610

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2. Individual counts for CentroidFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.80	0.76	0.84	57	34123	16	2	9	5	18
ASE_00002	RNaseP_arch links to Rfam database...	0.59	0.55	0.63	40	35448	26	2	21	3	33
ASE_00004	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.73	61	47812	22	9	13	0	36
ASE_00005	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.81	63	57892	15	0	15	0	54
ASE_00006	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.56	45	47505	39	6	30	3	48
ASE_00007	RNaseP_bact_a links to Rfam database...	0.57	0.46	0.70	51	59612	25	0	22	3	59
ASE_00009	RNaseP_arch links to Rfam database...	0.69	0.64	0.74	43	26048	16	0	15	1	24
ASE_00012	RNaseP_bact_a links to Rfam database...	0.54	0.44	0.68	54	73840	32	1	25	6	69
ASE_00014	RNaseP_arch links to Rfam database...	0.56	0.53	0.60	56	54192	40	6	31	3	50
ASE_00017	RNaseP_nuc links to Rfam database...	0.13	0.14	0.13	9	50969	77	15	47	15	55
ASE_00018	RNaseP_bact_a links to Rfam database...	0.65	0.58	0.74	78	80495	29	0	28	1	56
ASE_00020	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	75	73824	22	1	20	1	51
ASE_00021	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.81	96	104077	29	2	21	6	64
ASE_00022	RNaseP_bact_b links to Rfam database...	0.32	0.27	0.38	34	82939	60	0	55	5	90
ASE_00023	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	82	84150	27	2	21	4	45
ASE_00025	RNaseP_nuc links to Rfam database...	0.38	0.38	0.38	27	78534	96	8	37	51	44
ASE_00026	RNaseP_bact_a links to Rfam database...	0.57	0.47	0.69	52	59610	28	2	21	5	58
ASE_00028	RNaseP_bact_b links to Rfam database...	0.70	0.65	0.76	82	84558	34	4	22	8	44
ASE_00029	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	73	82935	21	3	17	1	49
ASE_00030	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.82	96	85374	21	3	18	0	49
ASE_00031	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.65	65	86636	40	2	33	5	61
ASE_00032	RNaseP_bact_a links to Rfam database...	0.51	0.43	0.61	51	80116	35	3	30	2	67
ASE_00033	RNaseP_bact_a links to Rfam database...	0.60	0.45	0.79	55	64910	17	0	15	2	66
ASE_00035	RNaseP_bact_a links to Rfam database...	0.40	0.32	0.50	38	70424	41	2	36	3	80
ASE_00036	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.71	72	75754	31	6	23	2	60
ASE_00037	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.67	38	59283	19	0	19	0	72
ASE_00038	RNaseP_bact_a links to Rfam database...	0.55	0.47	0.65	47	53556	27	4	21	2	54
ASE_00040	RNaseP_bact_a links to Rfam database...	0.15	0.14	0.17	18	78895	94	5	85	4	115
ASE_00041	RNaseP_bact_a links to Rfam database...	0.67	0.53	0.86	57	57564	12	0	9	3	51
ASE_00042	RNaseP_bact_a links to Rfam database...	0.59	0.53	0.66	77	89983	43	1	39	3	68
ASE_00044	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.72	70	54518	32	3	24	5	35
ASE_00046	RNaseP_bact_a links to Rfam database...	0.64	0.46	0.89	47	50350	8	1	5	2	56
ASE_00047	RNaseP_bact_a links to Rfam database...	0.58	0.49	0.70	64	74213	29	1	27	1	66
ASE_00052	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.83	62	61350	16	0	13	3	50
ASE_00053	RNaseP_bact_a links to Rfam database...	0.69	0.62	0.77	82	79294	28	7	18	3	51
ASE_00056	-	0.44	0.40	0.48	29	30815	35	4	28	3	43
ASE_00057	RNaseP_bact_a links to Rfam database...	0.70	0.64	0.75	86	82101	32	8	20	4	48
ASE_00064	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.77	51	45385	25	1	14	10	38
ASE_00066	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.74	73	72292	25	1	24	0	57
ASE_00068	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.87	45	37623	7	0	7	0	40
ASE_00069	RNaseP_bact_a links to Rfam database...	0.64	0.57	0.71	80	82915	35	4	29	2	60
ASE_00074	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	58	67789	51	4	45	2	61
ASE_00075	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.86	109	108684	24	2	16	6	53
ASE_00076	RNaseP_bact_a links to Rfam database...	0.50	0.42	0.58	50	68179	38	3	33	2	68
ASE_00077	RNaseP_bact_a links to Rfam database...	0.48	0.34	0.69	29	45108	14	3	10	1	57
ASE_00078	RNaseP_bact_a links to Rfam database...	0.72	0.59	0.88	49	43015	11	0	7	4	34
ASE_00079	RNaseP_bact_a links to Rfam database...	0.55	0.49	0.63	49	55533	30	2	27	1	51
ASE_00080	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.74	61	71549	25	1	20	4	62
ASE_00081	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	56	49688	27	5	21	1	41
ASE_00082	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.91	80	70412	18	1	7	10	36
ASE_00083	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.85	70	62399	17	0	12	5	40
ASE_00084	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.88	65	53554	11	2	7	2	34
ASE_00087	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	101	88287	23	2	20	1	43
ASE_00089	-	0.55	0.43	0.69	34	31326	15	2	13	0	45
ASE_00090	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.64	60	55517	39	4	30	5	41
ASE_00092	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.92	84	63455	10	1	6	3	29
ASE_00096	RNaseP_bact_a links to Rfam database...	0.72	0.59	0.88	68	63469	11	0	9	2	47
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	56	64519	45	5	40	0	64
ASE_00100	RNaseP_nuc links to Rfam database...	0.25	0.25	0.24	19	82137	103	12	47	44	57
ASE_00102	RNaseP_bact_a links to Rfam database...	0.50	0.40	0.63	67	117748	43	5	35	3	99
ASE_00104	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.84	81	64164	17	2	14	1	38
ASE_00105	RNaseP_bact_a links to Rfam database...	0.56	0.48	0.65	53	64180	31	4	24	3	58
ASE_00107	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.86	87	73052	15	1	13	1	40
ASE_00108	RNaseP_nuc links to Rfam database...	0.53	0.51	0.56	32	46914	52	6	19	27	31
ASE_00111	RNaseP_nuc links to Rfam database...	0.21	0.21	0.21	12	50028	60	14	32	14	45
ASE_00112	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	82	75379	12	0	5	7	34
ASE_00115	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.75	69	54523	31	4	19	8	32
ASE_00116	RNaseP_arch links to Rfam database...	0.42	0.32	0.55	21	31588	20	0	17	3	45
ASE_00118	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.75	60	60646	21	2	18	1	42
ASE_00119	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.77	78	62734	26	2	21	3	30
ASE_00120	RNaseP_arch links to Rfam database...	0.66	0.55	0.79	52	46905	14	3	11	0	42
ASE_00121	RNaseP_arch links to Rfam database...	0.29	0.26	0.32	24	45074	53	5	47	1	68
ASE_00122	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.88	57	43300	8	0	8	0	31
ASE_00123	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.65	44	38435	28	1	23	4	41
ASE_00125	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.94	58	39278	7	1	3	3	30
ASE_00126	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	46	40400	31	3	21	7	36
ASE_00128	RNaseP_bact_a links to Rfam database...	0.72	0.60	0.87	60	53232	12	1	8	3	40
ASE_00129	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	71	62748	19	0	16	3	40
ASE_00131	RNaseP_bact_a links to Rfam database...	0.76	0.64	0.90	54	39280	12	1	5	6	31
ASE_00132	RNaseP_bact_a links to Rfam database...	0.56	0.45	0.69	43	50341	20	2	17	1	52
ASE_00134	RNaseP_bact_a links to Rfam database...	0.46	0.38	0.56	36	50339	28	2	26	0	59
ASE_00135	RNaseP_bact_a links to Rfam database...	0.60	0.51	0.70	56	63110	31	1	23	7	53
ASE_00136	RNaseP_bact_a links to Rfam database...	0.61	0.53	0.70	49	48135	30	1	20	9	43
ASE_00137	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.86	73	48431	13	3	9	1	25
ASE_00138	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.77	40	40418	13	4	8	1	41
ASE_00139	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.80	51	54221	16	0	13	3	53
ASE_00140	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.86	77	70786	14	3	10	1	48
ASE_00142	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.68	70	67058	37	4	29	4	52
ASE_00145	RNaseP_arch links to Rfam database...	0.58	0.56	0.61	62	70023	44	5	35	4	49
ASE_00146	RNaseP_bact_a links to Rfam database...	0.56	0.48	0.66	59	70786	32	6	25	1	65
ASE_00148	RNaseP_arch links to Rfam database...	0.81	0.74	0.88	114	112445	19	4	12	3	40
ASE_00151	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.49	43	51916	44	10	34	0	55
ASE_00153	RNaseP_nuc links to Rfam database...	0.46	0.42	0.51	31	57569	56	5	25	26	42
ASE_00154	RNaseP_arch links to Rfam database...	0.73	0.67	0.78	72	65249	25	2	18	5	35
ASE_00155	RNaseP_arch links to Rfam database...	0.58	0.54	0.62	77	93403	51	6	42	3	65
ASE_00163	RNaseP_bact_a links to Rfam database...	0.34	0.31	0.36	29	53221	60	4	47	9	64
ASE_00165	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.88	70	52895	11	1	9	1	31
ASE_00168	RNaseP_nuc links to Rfam database...	0.32	0.36	0.28	23	60645	74	16	42	16	41
ASE_00169	RNaseP_bact_a links to Rfam database...	0.57	0.50	0.66	53	57211	29	0	27	2	54
ASE_00170	RNaseP_bact_a links to Rfam database...	0.69	0.61	0.78	57	48755	16	3	13	0	36
ASE_00171	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	64	48436	16	3	13	0	30
ASE_00172	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	76	58911	10	2	7	1	30
ASE_00174	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.71	60	60990	26	6	19	1	49
ASE_00175	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.40	36	59942	55	1	52	2	71
ASE_00176	RNaseP_bact_a links to Rfam database...	0.58	0.51	0.66	56	59946	32	4	25	3	54
ASE_00179	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	50	44189	15	3	11	1	34
ASE_00180	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.91	62	51292	11	0	6	5	38
ASE_00181	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	49	57541	41	2	38	1	57
ASE_00182	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.77	86	84144	25	1	24	0	50
ASE_00183	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.77	77	61325	32	0	23	9	36
ASE_00184	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.81	78	54519	20	3	15	2	24
ASE_00185	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	82	73436	21	1	17	3	46
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	86	78897	28	2	18	8	46
ASE_00187	RNaseP_arch links to Rfam database...	0.44	0.37	0.53	42	68556	39	1	36	2	73
ASE_00189	RNaseP_bact_b links to Rfam database...	0.65	0.51	0.83	52	63127	14	0	11	3	50
ASE_00190	RNaseP_bact_b links to Rfam database...	0.69	0.52	0.92	47	45400	8	0	4	4	43
ASE_00192	RNaseP_bact_b links to Rfam database...	0.65	0.58	0.73	77	84560	35	3	26	6	56
ASE_00194	RNaseP_bact_b links to Rfam database...	0.51	0.43	0.61	51	73453	36	1	31	4	68
ASE_00195	-	0.63	0.56	0.71	75	86215	33	2	28	3	58
ASE_00196	RNaseP_arch links to Rfam database...	0.76	0.76	0.76	57	31551	21	2	16	3	18
ASE_00197	RNaseP_bact_a links to Rfam database...	0.65	0.58	0.73	84	89138	37	2	29	6	61
ASE_00198	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.77	64	52567	20	4	15	1	38
ASE_00203	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.83	68	46583	18	4	10	4	28
ASE_00204	RNaseP_bact_b links to Rfam database...	0.59	0.52	0.67	58	67809	33	3	26	4	54
ASE_00205	RNaseP_arch links to Rfam database...	0.48	0.46	0.50	41	45974	44	7	34	3	49
ASE_00209	RNaseP_arch links to Rfam database...	0.58	0.50	0.67	44	43005	22	2	20	0	44
ASE_00210	RNaseP_arch links to Rfam database...	0.65	0.65	0.65	42	27196	23	7	16	0	23
ASE_00212	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.79	93	93844	29	2	22	5	55
ASE_00213	RNaseP_arch links to Rfam database...	0.69	0.62	0.76	41	27207	13	4	9	0	25
ASE_00214	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	78	56187	20	3	12	5	25
ASE_00215	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.63	49	48438	30	2	27	1	50
ASE_00216	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	47	39264	29	7	22	0	35
ASE_00217	RNaseP_bact_a links to Rfam database...	0.45	0.38	0.55	34	40408	29	2	26	1	56
ASE_00221	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	67	64542	14	0	11	3	50
ASE_00222	RNaseP_arch links to Rfam database...	0.74	0.70	0.79	110	111961	31	5	25	1	47
ASE_00227	RNaseP_bact_a links to Rfam database...	0.32	0.28	0.36	37	78900	66	6	60	0	96
ASE_00228	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.80	56	46901	16	7	7	2	30
ASE_00229	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.89	58	42421	7	1	6	0	29
ASE_00231	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	69	47818	9	1	7	1	27
ASE_00232	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.70	54	38426	23	10	13	0	30
ASE_00234	RNaseP_bact_a links to Rfam database...	0.57	0.47	0.69	61	75378	30	1	26	3	68
ASE_00237	RNaseP_nuc links to Rfam database...	0.09	0.09	0.09	5	45698	62	11	39	12	51
ASE_00238	RNaseP_bact_a links to Rfam database...	0.64	0.53	0.77	60	64183	19	0	18	1	54
ASE_00240	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	36	46587	43	1	41	1	57
ASE_00241	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	55	43896	6	0	5	1	32
ASE_00242	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.82	74	60985	19	4	12	3	38
ASE_00246	RNaseP_nuc links to Rfam database...	0.39	0.37	0.42	25	48145	45	8	27	10	42
ASE_00247	RNaseP_nuc links to Rfam database...	0.19	0.19	0.20	12	54225	67	14	34	19	52
ASE_00248	RNaseP_bact_a links to Rfam database...	0.67	0.56	0.80	64	62401	17	1	15	1	50
ASE_00250	RNaseP_bact_a links to Rfam database...	0.69	0.55	0.87	72	78920	14	0	11	3	59
ASE_00252	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	116	115311	19	2	11	6	52
ASE_00254	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.87	60	36787	15	4	5	6	22
ASE_00255	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.73	77	74586	29	3	25	1	53
ASE_00257	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	71	50959	12	0	10	2	26
ASE_00259	RNaseP_bact_a links to Rfam database...	0.47	0.39	0.58	47	73072	36	5	29	2	74
ASE_00263	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	65	70389	46	3	43	0	55
ASE_00264	RNaseP_nuc links to Rfam database...	0.52	0.49	0.56	49	49054	44	3	35	6	51
ASE_00267	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.70	44	45087	23	1	18	4	44
ASE_00270	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	86	72278	27	3	23	1	42
ASE_00274	RNaseP_bact_a links to Rfam database...	0.49	0.42	0.57	43	55535	33	3	30	0	60
ASE_00277	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	51	48126	28	5	23	0	40
ASE_00279	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.61	50	53219	32	3	29	0	51
ASE_00280	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.77	54	51933	18	2	14	2	44
ASE_00281	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	55	44484	18	1	11	6	33
ASE_00282	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	58	77710	47	8	39	0	69
ASE_00283	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.76	67	61688	22	4	17	1	40
ASE_00284	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.72	64	58222	27	5	20	2	44
ASE_00285	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.88	92	68902	17	3	9	5	30
ASE_00286	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	59	46594	16	1	11	4	33
ASE_00287	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.77	62	54865	20	1	18	1	41
ASE_00288	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.94	51	46002	4	0	3	1	42
ASE_00289	RNaseP_bact_a links to Rfam database...	0.83	0.73	0.94	115	100903	11	1	6	4	42
ASE_00291	-	0.53	0.46	0.61	43	48446	28	3	24	1	51
ASE_00292	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.69	72	81706	34	1	31	2	66
ASE_00294	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.81	111	114344	28	1	25	2	60
ASE_00295	RNaseP_bact_a links to Rfam database...	0.68	0.58	0.81	76	73826	18	1	17	0	55
ASE_00296	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.63	76	91686	45	4	40	1	69
ASE_00297	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	66	52890	20	3	16	1	32
ASE_00298	RNaseP_bact_a links to Rfam database...	0.30	0.27	0.33	31	67435	65	7	55	3	82
ASE_00299	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	51	49366	40	3	35	2	49
ASE_00313	RNaseP_nuc links to Rfam database...	0.55	0.56	0.54	50	62389	59	9	33	17	39
ASE_00316	RNaseP_nuc links to Rfam database...	0.68	0.63	0.74	62	107796	65	3	19	43	36
ASE_00318	RNaseP_bact_b links to Rfam database...	0.58	0.51	0.67	60	80111	33	9	20	4	58
ASE_00327	RNaseP_nuc links to Rfam database...	0.82	0.80	0.85	71	57207	24	3	10	11	18
ASE_00328	RNaseP_bact_b links to Rfam database...	0.74	0.61	0.89	68	72695	13	1	7	5	44
ASE_00330	RNaseP_nuc links to Rfam database...	0.79	0.78	0.80	70	56192	38	1	17	20	20
ASE_00332	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	72	81687	53	2	49	2	66
ASE_00335	RNaseP_bact_b links to Rfam database...	0.63	0.54	0.72	63	75379	29	2	22	5	53
ASE_00337	RNaseP_nuc links to Rfam database...	0.54	0.52	0.55	37	39273	44	5	25	14	34
ASE_00338	RNaseP_nuc links to Rfam database...	0.70	0.63	0.77	62	66349	36	3	16	17	36
ASE_00339	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.84	79	80106	24	0	15	9	40
ASE_00340	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.51	37	45984	39	4	31	4	48
ASE_00342	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.80	74	62388	20	1	18	1	41
ASE_00343	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	73	83342	32	1	20	11	40
ASE_00346	RNaseP_arch links to Rfam database...	0.36	0.34	0.38	33	48119	56	3	50	3	64
ASE_00353	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	77	57881	14	1	11	2	30
ASE_00359	RNaseP_arch links to Rfam database...	0.50	0.45	0.55	36	42713	32	3	26	3	44
ASE_00360	RNaseP_arch links to Rfam database...	0.33	0.31	0.36	20	29347	37	8	28	1	45
ASE_00361	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.63	63	75366	40	4	33	3	64
ASE_00362	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	53	48127	27	1	24	2	38
ASE_00363	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.89	59	51294	13	1	6	6	35
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.84	68	54204	17	0	13	4	37
ASE_00366	RNaseP_bact_a links to Rfam database...	0.45	0.40	0.51	39	58577	37	5	32	0	59
ASE_00367	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	40	42993	43	6	32	5	46
ASE_00369	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.84	67	55865	13	1	12	0	40
ASE_00370	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.74	56	41829	22	2	18	2	28
ASE_00372	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.74	64	51917	28	4	18	6	36
ASE_00374	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.79	63	44770	17	2	15	0	25
ASE_00375	RNaseP_bact_a links to Rfam database...	0.86	0.74	1.00	81	60297	3	0	0	3	29
ASE_00376	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.74	64	56866	25	4	19	2	41
ASE_00377	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.85	75	57542	19	3	10	6	32
ASE_00379	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.68	50	45982	30	3	21	6	39
ASE_00380	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.77	56	54873	21	3	14	4	43
ASE_00382	RNaseP_bact_a links to Rfam database...	0.59	0.54	0.65	45	41836	27	5	19	3	39
ASE_00383	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.84	73	54528	17	1	13	3	32
ASE_00384	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	67	48435	18	1	13	4	25
ASE_00385	RNaseP_bact_a links to Rfam database...	0.64	0.57	0.73	46	41842	18	8	9	1	35
ASE_00386	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.73	63	50317	29	1	22	6	33
ASE_00387	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.78	66	55860	20	1	18	1	38
ASE_00388	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.82	54	45687	13	0	12	1	35
ASE_00390	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.60	47	42117	32	7	24	1	38
ASE_00393	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.82	61	47821	19	1	12	6	32
ASE_00394	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.86	74	46885	14	3	9	2	19
ASE_00395	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	56	41544	18	1	15	2	28
ASE_00396	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.62	45	41543	29	2	26	1	38
ASE_00397	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.80	73	54524	19	3	15	1	32
ASE_00398	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.73	61	55862	25	1	21	3	43
ASE_00400	RNaseP_bact_a links to Rfam database...	0.68	0.58	0.78	62	57891	18	1	16	1	44
ASE_00401	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.70	76	76920	33	4	28	1	50
ASE_00402	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.84	53	42423	11	1	9	1	32
ASE_00403	RNaseP_bact_a links to Rfam database...	0.47	0.37	0.59	40	55877	31	0	28	3	67
ASE_00404	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.75	44	43012	16	1	14	1	41
ASE_00406	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.79	68	48742	21	5	13	3	26
ASE_00408	-	0.78	0.76	0.81	54	32318	14	2	11	1	17
ASE_00409	-	0.74	0.55	1.00	46	40995	0	0	0	0	37
ASE_00411	RNaseP_bact_a links to Rfam database...	0.55	0.46	0.65	41	49392	24	5	17	2	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.79	59	58236	19	1	15	3	46
ASE_00413	RNaseP_bact_a links to Rfam database...	0.56	0.48	0.66	39	44492	21	4	16	1	42
ASE_00414	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.53	43	46279	45	1	37	7	52
ASE_00415	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.66	50	54870	31	2	24	5	53
ASE_00416	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.68	71	77317	38	4	29	5	56
ASE_00417	RNaseP_arch links to Rfam database...	0.52	0.47	0.57	47	54532	39	1	35	3	53
ASE_00418	RNaseP_arch links to Rfam database...	0.07	0.07	0.08	5	38722	56	1	53	2	70
ASE_00419	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.87	77	54857	13	8	4	1	26
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.73	62	46886	28	5	18	5	32
ASE_00423	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.71	66	56860	29	5	22	2	43
ASE_00426	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.68	57	60991	28	2	25	1	51
ASE_00428	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.79	77	76539	23	2	18	3	48
ASE_00429	-	0.44	0.39	0.50	26	28151	30	3	23	4	40
ASE_00430	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.76	65	46886	27	4	16	7	32
ASE_00431	RNaseP_bact_a links to Rfam database...	0.57	0.46	0.70	44	46297	30	0	19	11	51
ASE_00434	RNaseP_bact_b links to Rfam database...	0.68	0.59	0.79	65	68183	25	2	15	8	45
ASE_00437	RNaseP_bact_a links to Rfam database...	0.50	0.40	0.64	54	79316	32	1	30	1	81
ASE_00438	RNaseP_bact_a links to Rfam database...	0.62	0.53	0.71	62	65979	25	1	24	0	54
ASE_00441	RNaseP_bact_a links to Rfam database...	0.84	0.74	0.94	83	64173	9	0	5	4	29
ASE_00447	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.81	79	60280	24	0	19	5	37
ASE_00448	RNaseP_bact_a links to Rfam database...	0.46	0.37	0.57	41	64189	36	6	25	5	71
ASE_00451	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.82	86	70771	20	1	18	1	39
CRW_00004	-	0.61	0.60	0.62	78	154165	77	6	41	30	53
CRW_00005	-	0.64	0.64	0.65	84	137945	71	8	38	25	48
CRW_00007	-	0.45	0.46	0.45	61	144856	80	22	52	6	72
CRW_00009	-	0.50	0.49	0.51	67	137943	80	5	60	15	71
CRW_00010	-	0.86	0.83	0.89	105	102713	19	3	10	6	21
CRW_00011	-	0.84	0.85	0.84	117	118201	40	2	21	17	21
CRW_00012	-	0.54	0.46	0.64	65	147052	44	8	28	8	76
CRW_00013	Intron_gpI links to Rfam database...	0.45	0.32	0.63	37	103681	42	7	15	20	78
CRW_00014	-	0.34	0.32	0.38	39	103636	75	9	56	10	84
CRW_00016	Intron_gpI links to Rfam database...	0.74	0.66	0.84	79	77327	27	0	15	12	41
CRW_00017	-	0.64	0.58	0.70	53	92159	37	4	19	14	38
CRW_00018	-	0.59	0.52	0.68	63	182617	71	5	25	41	58
CRW_00019	-	0.80	0.75	0.84	103	127643	37	1	18	18	34
CRW_00423	-	0.24	0.18	0.31	34	242448	78	7	67	4	155
CRW_00429	-	0.27	0.19	0.38	44	306819	75	14	59	2	189
CRW_00605	-	0.71	0.63	0.80	44	183866	107	2	9	96	26
CRW_00608	-	0.84	0.72	0.98	57	35720	6	0	1	5	22
CRW_00610	Intron_gpI links to Rfam database...	0.57	0.52	0.63	42	36248	26	7	18	1	39
CRW_00611	-	0.86	0.77	0.97	58	31315	9	0	2	7	17
CRW_00612	-	0.58	0.51	0.67	47	270410	149	0	23	126	46
CRW_00613	Intron_gpI links to Rfam database...	0.78	0.72	0.85	56	34914	17	1	9	7	22
CRW_00614	Intron_gpI links to Rfam database...	0.23	0.23	0.24	13	121716	103	6	36	61	44
CRW_00618	Intron_gpI links to Rfam database...	0.23	0.21	0.24	13	56226	58	6	35	17	48
CRW_00619	Intron_gpI links to Rfam database...	0.51	0.40	0.64	29	164980	90	3	13	74	44
CRW_00620	Intron_gpI links to Rfam database...	0.21	0.22	0.21	14	150907	85	15	39	31	49
CRW_00621	Intron_gpI links to Rfam database...	0.38	0.34	0.43	24	153125	120	5	27	88	47
CRW_00623	Intron_gpI links to Rfam database...	0.27	0.18	0.41	15	129758	64	3	19	42	68
CRW_00626	-	0.77	0.74	0.81	77	100930	45	1	17	27	27
CRW_00629	-	0.59	0.56	0.64	68	91271	42	8	31	3	54
CRW_00632	-	0.73	0.71	0.75	91	82907	35	2	28	5	37
CRW_00633	Intron_gpI links to Rfam database...	0.65	0.56	0.77	59	63469	20	2	16	2	47
CRW_00634	Intron_gpI links to Rfam database...	0.53	0.47	0.59	44	64546	31	11	19	1	50
CRW_00635	-	0.49	0.45	0.54	61	109166	61	10	41	10	76
CRW_00636	-	0.58	0.55	0.61	78	114832	54	7	43	4	65
CRW_00637	-	0.41	0.36	0.46	57	133779	71	6	61	4	101
CRW_00639	-	0.42	0.38	0.45	53	126639	68	14	50	4	85
CRW_00641	-	0.88	0.86	0.92	65	39832	7	1	5	1	11
CRW_00642	-	0.56	0.58	0.54	38	47207	40	8	25	7	27
CRW_00643	-	0.42	0.42	0.42	51	123135	74	18	52	4	71
CRW_00645	-	0.60	0.60	0.60	40	35444	33	5	22	6	27
CRW_00646	-	0.54	0.53	0.56	34	34919	31	5	22	4	30
CRW_00648	-	0.66	0.60	0.74	89	137954	41	7	25	9	59
CRW_00649	-	0.76	0.74	0.77	92	204361	97	6	21	70	32
CRW_00650	-	0.53	0.49	0.57	70	112927	57	4	49	4	72
CRW_00651	-	0.51	0.51	0.52	62	100008	61	13	45	3	59
CRW_00652	-	0.61	0.63	0.60	82	132218	68	10	45	13	48
CRW_00653	-	0.92	0.90	0.94	120	94702	12	1	7	4	14
CRW_00654	-	0.85	0.80	0.91	99	78101	13	2	8	3	25
CRW_00655	-	0.89	0.82	0.95	102	89146	10	1	4	5	22
CRW_00656	-	0.68	0.59	0.78	76	90427	27	7	15	5	53
CRW_00657	-	0.80	0.77	0.83	105	105903	31	4	18	9	31
CRW_00658	-	0.46	0.45	0.47	46	74594	58	18	33	7	56
CRW_00659	-	0.42	0.44	0.40	27	32318	47	11	29	7	34
CRW_00660	-	0.50	0.47	0.53	28	22102	26	3	22	1	32
CRW_00661	-	0.11	0.10	0.12	5	24268	39	17	20	2	46
CRW_00662	-	0.38	0.35	0.40	23	28623	41	4	30	7	42
CRW_00663	-	0.11	0.10	0.13	6	26060	41	1	39	1	55
CRW_00664	-	0.22	0.22	0.23	17	53554	64	9	48	7	61
CRW_00665	-	0.21	0.19	0.23	9	23614	30	7	23	0	39
CRW_00666	-	0.62	0.58	0.67	73	96032	39	7	29	3	53
CRW_00668	-	0.69	0.66	0.71	99	163739	57	7	33	17	51
CRW_00669	-	0.73	0.58	0.91	69	97385	20	0	7	13	50
CRW_00670	Intron_gpI links to Rfam database...	0.77	0.63	0.93	76	70043	6	0	6	0	44
CRW_00671	Intron_gpI links to Rfam database...	0.71	0.64	0.78	75	62739	23	1	20	2	42
CRW_00672	Intron_gpI links to Rfam database...	0.58	0.49	0.70	54	72313	26	7	16	3	57
CRW_00673	-	0.79	0.75	0.83	79	100033	27	13	3	11	26
CRW_00674	Intron_gpI links to Rfam database...	0.71	0.63	0.80	78	83339	24	5	14	5	46
CRW_00676	Intron_gpI links to Rfam database...	0.47	0.46	0.48	53	93418	61	14	43	4	62
CRW_00677	-	0.57	0.49	0.66	51	71933	32	6	20	6	54
CRW_00679	-	0.41	0.39	0.43	42	76538	62	14	42	6	65
CRW_00681	-	0.54	0.53	0.55	59	112942	67	17	32	18	53
CRW_00685	-	0.31	0.34	0.28	36	156953	107	32	59	16	70
CRW_00686	-	0.67	0.59	0.76	74	95168	30	4	20	6	51
CRW_00687	-	0.64	0.62	0.65	41	28617	23	7	15	1	25
CRW_00688	-	0.85	0.82	0.89	47	21892	7	2	4	1	10
CRW_00689	-	0.69	0.69	0.70	53	33594	27	6	17	4	24
CRW_00690	-	0.77	0.71	0.84	49	33353	16	2	7	7	20
CRW_00691	-	0.67	0.61	0.73	41	27205	20	1	14	5	26
CRW_00692	Intron_gpI links to Rfam database...	0.49	0.44	0.53	40	68560	36	15	20	1	50
CRW_00693	-	0.70	0.68	0.72	83	89137	46	2	31	13	39
CRW_00694	-	0.66	0.65	0.68	79	85788	43	4	34	5	43
CRW_00699	-	0.76	0.71	0.82	90	91696	23	0	20	3	36
CRW_00700	-	0.77	0.73	0.81	107	180769	49	1	24	24	40
CRW_00703	-	0.51	0.48	0.53	32	40410	34	5	23	6	34
CRW_00714	-	0.76	0.65	0.89	70	186276	43	3	6	34	37
CRW_00715	-	0.83	0.71	0.97	74	69302	5	0	2	3	30
CRW_00716	-	0.81	0.73	0.89	65	193680	73	2	6	65	24
CRW_00717	-	0.42	0.30	0.59	44	153661	39	9	21	9	104
CRW_00718	-	0.70	0.55	0.89	105	189918	29	0	13	16	86
CRW_00719	-	0.69	0.62	0.78	56	230109	91	4	12	75	35
CRW_00720	-	0.53	0.47	0.61	43	208264	77	4	24	49	48
CRW_00721	-	0.65	0.57	0.74	39	58600	24	5	9	10	29
CRW_00764	-	0.11	0.08	0.16	15	253022	84	21	58	5	181
CRW_00775	-	0.18	0.11	0.30	24	314741	59	14	42	3	188
CRW_00815	-	0.65	0.65	0.66	102	159741	57	12	40	5	56
CRW_00816	-	0.46	0.44	0.48	57	143796	69	9	54	6	72
CRW_00820	-	0.68	0.61	0.77	88	136388	34	3	24	7	57
PDB_00072	-	0.49	0.50	0.49	105	148025	110	9	101	0	105
PDB_00078	-	0.54	0.50	0.57	58	49669	43	5	38	0	57
PDB_00079	-	0.69	0.63	0.76	89	121654	57	9	19	29	53
PDB_00278	-	0.23	0.19	0.29	14	24927	35	2	33	0	58
PDB_00403	-	0.63	0.59	0.66	91	124612	59	14	33	12	62
PDB_00423	-	0.15	0.14	0.17	10	26738	48	4	44	0	64
PDB_00701	-	0.17	0.16	0.18	17	45357	77	6	71	0	92
PDB_00747	-	0.79	0.68	0.92	54	24472	6	0	5	1	26
PDB_00827	Intron_gpI links to Rfam database...	0.71	0.54	0.94	44	26981	5	0	3	2	37
PDB_00917	-	0.51	0.47	0.54	45	35162	44	2	36	6	50
PDB_00919	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.62	52	44169	36	4	28	4	51
PDB_01129	-	0.52	0.44	0.63	31	35462	22	12	6	4	40
PDB_01157	-	0.45	0.40	0.52	39	50011	36	6	30	0	59
PDB_01166	-	0.57	0.51	0.63	109	181932	71	16	49	6	103
RFA_00597	Telomerase-vert links to Rfam database...	0.60	0.59	0.61	64	97798	56	15	26	15	45
RFA_00598	Telomerase-vert links to Rfam database...	0.48	0.47	0.51	47	84573	71	5	41	25	54
RFA_00599	Telomerase-vert links to Rfam database...	0.73	0.70	0.76	78	101372	49	7	18	24	33
RFA_00600	Telomerase-vert links to Rfam database...	0.68	0.72	0.64	72	120183	71	18	22	31	28
RFA_00601	Telomerase-vert links to Rfam database...	0.34	0.36	0.32	41	99105	97	33	56	8	73
RFA_00602	Telomerase-vert links to Rfam database...	0.67	0.71	0.64	82	101347	54	22	24	8	34
TMR_00007	tmRNA links to Rfam database...	0.80	0.68	0.94	73	61698	11	1	4	6	35
TMR_00008	tmRNA links to Rfam database...	0.68	0.59	0.79	63	65986	26	7	10	9	43
TMR_00010	tmRNA links to Rfam database...	0.37	0.33	0.42	32	57893	50	5	40	5	64
TMR_00012	tmRNA links to Rfam database...	0.43	0.42	0.44	34	64542	63	15	29	19	47
TMR_00014	tmRNA links to Rfam database...	0.77	0.70	0.84	77	68543	22	4	11	7	33
TMR_00017	tmRNA links to Rfam database...	0.55	0.41	0.74	42	67104	19	0	15	4	60
TMR_00018	tmRNA links to Rfam database...	0.45	0.38	0.52	35	64553	36	10	22	4	57
TMR_00028	tmRNA links to Rfam database...	0.71	0.68	0.73	66	62745	28	4	20	4	31
TMR_00030	tmRNA links to Rfam database...	0.38	0.32	0.45	35	75777	47	7	36	4	76
TMR_00034	tmRNA links to Rfam database...	0.63	0.62	0.65	68	59926	44	7	30	7	42
TMR_00035	tmRNA links to Rfam database...	0.53	0.55	0.52	54	67792	57	10	40	7	44
TMR_00036	tmRNA links to Rfam database...	0.71	0.59	0.85	60	90454	35	2	9	24	41
TMR_00038	tmRNA links to Rfam database...	0.27	0.25	0.28	28	71153	78	14	58	6	82
TMR_00042	tmRNA links to Rfam database...	0.38	0.34	0.42	33	62757	48	6	39	3	65
TMR_00046	tmRNA links to Rfam database...	0.60	0.56	0.64	54	62750	37	4	27	6	42
TMR_00047	tmRNA links to Rfam database...	0.21	0.21	0.22	12	48461	59	11	32	16	45
TMR_00048	tmRNA links to Rfam database...	0.48	0.46	0.49	44	64890	55	8	38	9	51
TMR_00049	tmRNA links to Rfam database...	0.59	0.54	0.64	47	63116	37	4	23	10	40
TMR_00051	tmRNA links to Rfam database...	0.68	0.63	0.75	59	65624	35	2	18	15	35
TMR_00055	tmRNA links to Rfam database...	0.47	0.39	0.56	44	78925	34	10	24	0	70
TMR_00057	tmRNA links to Rfam database...	0.25	0.27	0.23	21	73830	78	15	54	9	58
TMR_00061	tmRNA links to Rfam database...	0.34	0.29	0.40	29	59612	52	8	36	8	70
TMR_00062	tmRNA links to Rfam database...	0.62	0.62	0.63	64	78504	48	7	31	10	40
TMR_00064	tmRNA links to Rfam database...	0.42	0.37	0.48	38	76949	41	10	31	0	65
TMR_00065	tmRNA links to Rfam database...	0.50	0.40	0.64	42	76570	25	10	14	1	64
TMR_00067	tmRNA links to Rfam database...	0.47	0.45	0.50	51	82114	54	7	43	4	63
TMR_00073	tmRNA links to Rfam database...	0.62	0.54	0.71	63	65614	27	5	21	1	54
TMR_00076	tmRNA links to Rfam database...	0.50	0.48	0.53	48	70785	50	12	31	7	52
TMR_00080	tmRNA links to Rfam database...	0.42	0.36	0.49	35	70428	37	7	30	0	61
TMR_00081	tmRNA links to Rfam database...	0.55	0.43	0.71	46	67096	19	4	15	0	60
TMR_00082	tmRNA links to Rfam database...	0.29	0.26	0.32	25	67818	53	9	44	0	71
TMR_00083	tmRNA links to Rfam database...	0.77	0.71	0.83	75	68175	17	4	11	2	30
TMR_00092	tmRNA links to Rfam database...	0.65	0.66	0.64	67	67424	43	11	26	6	34
TMR_00093	tmRNA links to Rfam database...	0.42	0.35	0.49	36	64188	43	12	25	6	66
TMR_00096	tmRNA links to Rfam database...	0.31	0.27	0.36	27	64906	56	10	37	9	73
TMR_00101	tmRNA links to Rfam database...	0.63	0.58	0.68	62	64170	39	8	21	10	45
TMR_00102	tmRNA links to Rfam database...	0.34	0.30	0.39	30	64185	49	11	35	3	71
TMR_00103	tmRNA links to Rfam database...	0.57	0.58	0.57	63	64150	50	15	33	2	45
TMR_00104	-	0.08	0.07	0.09	5	66741	49	11	38	0	65
TMR_00106	tmRNA links to Rfam database...	0.58	0.50	0.67	60	90010	33	10	20	3	60
TMR_00109	tmRNA links to Rfam database...	0.50	0.40	0.61	49	88330	31	8	23	0	73
TMR_00111	tmRNA links to Rfam database...	0.56	0.52	0.61	63	90421	45	12	29	4	59
TMR_00116	tmRNA links to Rfam database...	0.74	0.63	0.86	66	64903	25	1	10	14	38
TMR_00117	tmRNA links to Rfam database...	0.73	0.63	0.84	74	80112	23	6	8	9	44
TMR_00118	tmRNA links to Rfam database...	0.62	0.54	0.71	65	81314	35	4	23	8	55
TMR_00119	tmRNA links to Rfam database...	0.68	0.63	0.73	66	71919	31	4	21	6	38
TMR_00123	tmRNA links to Rfam database...	0.56	0.50	0.63	50	66350	35	3	27	5	51
TMR_00124	tmRNA links to Rfam database...	0.64	0.58	0.71	57	70420	32	10	13	9	41
TMR_00125	tmRNA links to Rfam database...	0.34	0.25	0.47	25	64208	32	7	21	4	74
TMR_00127	tmRNA links to Rfam database...	0.64	0.61	0.68	59	62748	36	1	27	8	38
TMR_00128	tmRNA links to Rfam database...	0.35	0.32	0.37	31	60992	52	14	38	0	65
TMR_00131	tmRNA links to Rfam database...	0.59	0.49	0.71	49	64911	27	5	15	7	50
TMR_00135	tmRNA links to Rfam database...	0.67	0.64	0.71	63	62746	36	6	20	10	36
TMR_00136	tmRNA links to Rfam database...	0.21	0.22	0.21	22	74585	87	20	64	3	79
TMR_00137	tmRNA links to Rfam database...	0.34	0.27	0.43	24	61019	40	3	29	8	65
TMR_00139	tmRNA links to Rfam database...	0.62	0.63	0.61	57	62035	45	18	18	9	34
TMR_00140	tmRNA links to Rfam database...	0.58	0.55	0.62	55	73831	55	3	31	21	45
TMR_00142	tmRNA links to Rfam database...	0.61	0.58	0.64	59	70784	46	8	25	13	43
TMR_00143	tmRNA links to Rfam database...	0.46	0.46	0.47	47	64520	63	10	43	10	56
TMR_00144	tmRNA links to Rfam database...	0.44	0.37	0.52	38	74232	40	4	31	5	65
TMR_00146	tmRNA links to Rfam database...	0.87	0.90	0.84	38	32086	19	5	2	12	4
TMR_00150	tmRNA links to Rfam database...	0.85	0.79	0.92	33	43035	27	0	3	24	9
TMR_00152	tmRNA links to Rfam database...	0.38	0.30	0.47	35	81332	46	7	32	7	80
TMR_00155	tmRNA links to Rfam database...	0.74	0.63	0.86	66	61699	20	3	8	9	38
TMR_00156	tmRNA links to Rfam database...	0.57	0.49	0.66	48	60305	29	5	20	4	49
TMR_00158	tmRNA links to Rfam database...	0.56	0.51	0.63	50	60646	34	3	27	4	49
TMR_00159	tmRNA links to Rfam database...	0.67	0.61	0.74	56	62052	26	6	14	6	36
TMR_00160	tmRNA links to Rfam database...	0.56	0.51	0.62	48	64542	37	8	22	7	47
TMR_00164	tmRNA links to Rfam database...	0.41	0.35	0.49	37	66720	46	7	31	8	69
TMR_00165	tmRNA links to Rfam database...	0.50	0.46	0.55	45	61694	44	9	28	7	52
TMR_00166	tmRNA links to Rfam database...	0.43	0.35	0.54	35	61711	40	3	27	10	66
TMR_00168	tmRNA links to Rfam database...	0.76	0.68	0.84	78	60982	19	0	15	4	36
TMR_00173	tmRNA links to Rfam database...	0.42	0.36	0.50	15	42165	40	5	10	25	27
TMR_00179	tmRNA links to Rfam database...	0.45	0.45	0.45	44	67063	61	6	48	7	54
TMR_00180	tmRNA links to Rfam database...	0.76	0.72	0.80	71	67072	30	4	14	12	28
TMR_00182	tmRNA links to Rfam database...	0.26	0.22	0.31	22	66358	54	8	42	4	80
TMR_00183	tmRNA links to Rfam database...	0.28	0.24	0.32	25	63111	60	7	47	6	78
TMR_00184	tmRNA links to Rfam database...	0.43	0.41	0.44	42	63095	61	4	49	8	60
TMR_00193	tmRNA links to Rfam database...	0.56	0.54	0.58	43	59266	43	6	25	12	37
TMR_00194	tmRNA links to Rfam database...	0.52	0.44	0.62	41	62769	33	1	24	8	52
TMR_00196	tmRNA links to Rfam database...	0.52	0.42	0.63	41	61010	30	7	17	6	56
TMR_00199	tmRNA links to Rfam database...	0.57	0.57	0.57	52	62744	46	16	23	7	40
TMR_00200	-	0.44	0.40	0.49	30	41555	41	7	24	10	45
TMR_00204	tmRNA links to Rfam database...	0.60	0.53	0.68	51	60303	33	9	15	9	46
TMR_00207	tmRNA links to Rfam database...	0.46	0.38	0.55	39	72319	37	4	28	5	64
TMR_00223	tmRNA links to Rfam database...	0.42	0.38	0.47	36	64185	44	10	30	4	59
TMR_00224	tmRNA links to Rfam database...	0.55	0.44	0.70	44	64917	24	2	17	5	57
TMR_00226	tmRNA links to Rfam database...	0.38	0.36	0.41	38	69658	61	13	42	6	67
TMR_00227	tmRNA links to Rfam database...	0.37	0.36	0.38	36	70031	61	8	50	3	65
TMR_00228	tmRNA links to Rfam database...	0.35	0.35	0.36	38	88304	73	20	48	5	70
TMR_00234	tmRNA links to Rfam database...	0.39	0.32	0.47	33	58926	41	4	33	4	69
TMR_00238	tmRNA links to Rfam database...	0.33	0.33	0.33	33	84567	72	19	47	6	68
TMR_00239	tmRNA links to Rfam database...	0.52	0.50	0.55	48	61688	42	9	31	2	48
TMR_00240	tmRNA links to Rfam database...	0.58	0.54	0.62	46	63116	34	13	15	6	39
TMR_00246	-	0.28	0.29	0.27	10	78173	96	2	25	69	24
TMR_00248	tmRNA links to Rfam database...	0.38	0.32	0.46	12	54259	40	3	11	26	26
TMR_00257	tmRNA links to Rfam database...	0.26	0.20	0.33	20	67101	45	1	39	5	78
TMR_00259	tmRNA links to Rfam database...	0.37	0.32	0.44	33	67821	42	8	34	0	70
TMR_00261	tmRNA links to Rfam database...	0.59	0.59	0.59	60	66694	45	13	28	4	41
TMR_00262	tmRNA links to Rfam database...	0.53	0.46	0.62	48	74227	32	10	20	2	56
TMR_00271	tmRNA links to Rfam database...	0.62	0.57	0.68	52	64184	36	6	19	11	39
TMR_00274	tmRNA links to Rfam database...	0.60	0.59	0.62	62	66695	43	13	25	5	43
TMR_00278	tmRNA links to Rfam database...	0.47	0.43	0.51	44	67809	53	3	40	10	58
TMR_00279	tmRNA links to Rfam database...	0.57	0.54	0.60	51	68921	44	6	28	10	43
TMR_00280	tmRNA links to Rfam database...	0.62	0.62	0.61	63	65963	59	3	37	19	38
TMR_00283	tmRNA links to Rfam database...	0.65	0.52	0.81	50	65279	22	1	11	10	46
TMR_00289	tmRNA links to Rfam database...	0.57	0.53	0.62	52	67077	42	5	27	10	46
TMR_00290	tmRNA links to Rfam database...	0.61	0.53	0.70	49	64191	34	0	21	13	43
TMR_00296	tmRNA links to Rfam database...	0.50	0.48	0.52	47	68915	45	9	35	1	51
TMR_00298	tmRNA links to Rfam database...	0.57	0.50	0.65	51	68186	35	10	18	7	50
TMR_00300	tmRNA links to Rfam database...	0.65	0.63	0.67	71	70394	46	9	26	11	41
TMR_00301	tmRNA links to Rfam database...	0.63	0.51	0.79	49	82153	18	3	10	5	47
TMR_00302	tmRNA links to Rfam database...	0.29	0.28	0.30	26	77335	69	14	46	9	68
TMR_00305	tmRNA links to Rfam database...	0.65	0.57	0.73	58	60996	32	5	16	11	44
TMR_00306	tmRNA links to Rfam database...	0.71	0.66	0.76	70	64169	27	2	20	5	36
TMR_00310	tmRNA links to Rfam database...	0.58	0.52	0.64	51	63823	40	9	20	11	47
TMR_00317	tmRNA links to Rfam database...	0.67	0.64	0.71	65	68173	31	4	23	4	37
TMR_00331	tmRNA links to Rfam database...	0.40	0.40	0.40	33	66712	63	6	44	13	49
TMR_00332	tmRNA links to Rfam database...	0.43	0.35	0.53	35	67095	36	1	30	5	64
TMR_00334	tmRNA links to Rfam database...	0.39	0.35	0.44	35	66716	51	9	35	7	66
TMR_00337	tmRNA links to Rfam database...	0.41	0.36	0.48	43	82938	50	10	37	3	76
TMR_00340	tmRNA links to Rfam database...	0.55	0.52	0.58	42	64188	53	5	26	22	39
TMR_00341	tmRNA links to Rfam database...	0.34	0.33	0.36	30	63106	60	14	40	6	62
TMR_00343	tmRNA links to Rfam database...	0.37	0.35	0.39	37	64886	65	6	51	8	68
TMR_00345	tmRNA links to Rfam database...	0.73	0.68	0.77	71	63811	28	5	16	7	33
TMR_00346	tmRNA links to Rfam database...	0.51	0.46	0.57	43	64186	36	12	20	4	51
TMR_00348	tmRNA links to Rfam database...	0.30	0.20	0.44	20	77376	42	7	18	17	79
TMR_00352	tmRNA links to Rfam database...	0.10	0.11	0.10	8	95182	86	28	48	10	67
TMR_00353	tmRNA links to Rfam database...	0.56	0.55	0.56	58	84152	55	18	27	10	47
TMR_00357	tmRNA links to Rfam database...	0.36	0.29	0.45	27	82968	51	10	23	18	65
TMR_00358	tmRNA links to Rfam database...	0.67	0.65	0.69	64	74985	47	14	15	18	35
TMR_00361	-	0.35	0.35	0.35	25	93456	55	17	30	8	47
TMR_00366	tmRNA links to Rfam database...	0.52	0.45	0.59	45	67820	42	11	20	11	55
TMR_00372	tmRNA links to Rfam database...	0.59	0.57	0.62	55	70411	45	6	28	11	41
TMR_00374	tmRNA links to Rfam database...	0.37	0.35	0.39	32	81728	64	7	43	14	60
TMR_00375	tmRNA links to Rfam database...	0.52	0.53	0.52	52	73436	52	12	36	4	46
TMR_00376	tmRNA links to Rfam database...	0.56	0.48	0.64	46	74619	40	4	22	14	49
TMR_00378	tmRNA links to Rfam database...	0.36	0.30	0.44	29	67830	47	8	29	10	68
TMR_00383	tmRNA links to Rfam database...	0.50	0.39	0.65	39	66735	30	3	18	9	61
TMR_00384	tmRNA links to Rfam database...	0.23	0.18	0.31	19	65641	47	1	42	4	89
TMR_00393	tmRNA links to Rfam database...	0.61	0.62	0.60	33	53246	53	6	16	31	20
TMR_00395	tmRNA links to Rfam database...	0.75	0.70	0.81	76	64526	25	4	14	7	33
TMR_00398	tmRNA links to Rfam database...	0.77	0.70	0.84	74	65253	20	5	9	6	32
TMR_00399	tmRNA links to Rfam database...	0.41	0.35	0.47	33	64910	43	11	26	6	61
TMR_00404	tmRNA links to Rfam database...	0.60	0.58	0.62	53	67443	49	6	26	17	39
TMR_00408	tmRNA links to Rfam database...	0.60	0.61	0.59	54	65975	47	12	25	10	34
TMR_00409	tmRNA links to Rfam database...	0.65	0.76	0.56	35	68572	65	10	18	37	11
TMR_00411	tmRNA links to Rfam database...	0.57	0.53	0.62	46	61001	37	7	21	9	41
TMR_00415	tmRNA links to Rfam database...	0.70	0.61	0.79	62	67083	17	3	13	1	39
TMR_00419	tmRNA links to Rfam database...	0.65	0.61	0.70	68	81713	47	9	20	18	43
TMR_00422	tmRNA links to Rfam database...	0.54	0.58	0.51	53	67792	66	16	35	15	39
TMR_00423	tmRNA links to Rfam database...	0.52	0.52	0.51	38	63829	48	12	24	12	35
TMR_00427	tmRNA links to Rfam database...	0.44	0.34	0.56	33	67469	31	8	18	5	64
TMR_00429	tmRNA links to Rfam database...	0.47	0.42	0.52	46	74603	47	14	28	5	63
TMR_00430	tmRNA links to Rfam database...	0.17	0.17	0.17	18	82517	86	23	63	0	91
TMR_00431	tmRNA links to Rfam database...	0.73	0.67	0.79	37	51956	37	4	6	27	18
TMR_00432	tmRNA links to Rfam database...	0.27	0.22	0.32	23	79729	54	8	40	6	81
TMR_00433	tmRNA links to Rfam database...	0.57	0.53	0.61	56	80108	41	7	29	5	50
TMR_00439	tmRNA links to Rfam database...	0.49	0.46	0.53	46	68549	50	10	30	10	55
TMR_00441	tmRNA links to Rfam database...	0.16	0.14	0.17	12	62059	68	14	43	11	71
TMR_00443	tmRNA links to Rfam database...	0.62	0.50	0.76	52	67093	23	6	10	7	52
TMR_00448	tmRNA links to Rfam database...	0.54	0.45	0.66	41	62066	27	5	16	6	51
TMR_00451	tmRNA links to Rfam database...	0.23	0.19	0.27	17	63483	50	12	34	4	72
TMR_00457	tmRNA links to Rfam database...	0.24	0.22	0.26	22	78522	66	4	58	4	80
TMR_00458	tmRNA links to Rfam database...	0.35	0.29	0.42	27	63481	45	8	30	7	66
TMR_00460	tmRNA links to Rfam database...	0.67	0.60	0.74	64	79314	29	4	19	6	42
TMR_00465	tmRNA links to Rfam database...	0.32	0.28	0.37	26	64190	49	14	31	4	68
TMR_00469	tmRNA links to Rfam database...	0.57	0.52	0.63	52	64537	35	10	21	4	48
TMR_00472	tmRNA links to Rfam database...	0.52	0.42	0.63	41	64555	29	6	18	5	56
TMR_00478	tmRNA links to Rfam database...	0.26	0.26	0.25	26	71907	81	19	58	4	73
TMR_00498	tmRNA links to Rfam database...	0.47	0.40	0.55	40	68933	40	12	21	7	59
TMR_00499	tmRNA links to Rfam database...	0.25	0.23	0.26	23	64532	71	6	59	6	76
TMR_00501	tmRNA links to Rfam database...	0.47	0.45	0.49	41	62397	52	7	36	9	51
TMR_00502	tmRNA links to Rfam database...	0.37	0.37	0.38	34	75377	63	16	39	8	59
TMR_00503	tmRNA links to Rfam database...	0.73	0.68	0.80	75	67802	27	3	16	8	36
TMR_00519	tmRNA links to Rfam database...	0.40	0.31	0.54	29	63136	38	5	20	13	66
TMR_00520	tmRNA links to Rfam database...	0.50	0.42	0.60	42	63120	38	4	24	10	57
TMR_00522	tmRNA links to Rfam database...	0.41	0.35	0.47	34	63118	47	8	30	9	63
TMR_00528	tmRNA links to Rfam database...	0.41	0.36	0.46	35	63114	51	12	29	10	62
TMR_00540	tmRNA links to Rfam database...	0.37	0.34	0.40	35	73449	60	7	45	8	69
TMR_00541	tmRNA links to Rfam database...	0.62	0.55	0.69	58	61692	34	4	22	8	47
TMR_00544	tmRNA links to Rfam database...	0.35	0.31	0.39	33	89592	62	10	41	11	75
TMR_00547	tmRNA links to Rfam database...	0.66	0.63	0.70	63	65251	30	0	27	3	37
TMR_00553	tmRNA links to Rfam database...	0.47	0.44	0.50	36	48133	42	6	30	6	45
TMR_00559	tmRNA links to Rfam database...	0.44	0.38	0.52	38	62408	41	8	27	6	63
TMR_00560	tmRNA links to Rfam database...	0.57	0.42	0.77	41	61022	17	1	11	5	57
TMR_00562	tmRNA links to Rfam database...	0.19	0.19	0.19	19	72673	79	16	63	0	83
TMR_00563	tmRNA links to Rfam database...	0.65	0.65	0.65	67	75363	44	15	21	8	36
TMR_00566	tmRNA links to Rfam database...	0.59	0.48	0.73	48	60660	23	1	17	5	52
TMR_00568	tmRNA links to Rfam database...	0.53	0.49	0.56	49	60639	44	4	34	6	50
TMR_00570	tmRNA links to Rfam database...	0.69	0.60	0.79	58	60305	21	1	14	6	39
TMR_00571	tmRNA links to Rfam database...	0.61	0.53	0.70	52	60652	30	6	16	8	47
TMR_00576	tmRNA links to Rfam database...	0.66	0.62	0.71	63	60289	33	5	21	7	39
TMR_00579	tmRNA links to Rfam database...	0.23	0.23	0.23	21	80509	80	15	56	9	69
TMR_00580	tmRNA links to Rfam database...	0.44	0.41	0.47	41	60638	50	10	37	3	59
TMR_00581	tmRNA links to Rfam database...	0.48	0.41	0.56	40	62409	37	3	29	5	58
TMR_00584	tmRNA links to Rfam database...	0.67	0.61	0.75	59	60996	30	1	19	10	38
TMR_00586	tmRNA links to Rfam database...	0.42	0.41	0.43	40	60981	59	10	44	5	57
TMR_00587	tmRNA links to Rfam database...	0.61	0.58	0.65	58	61336	39	6	25	8	42
TMR_00588	tmRNA links to Rfam database...	0.39	0.37	0.41	37	77330	59	19	35	5	64
TMR_00594	tmRNA links to Rfam database...	0.43	0.35	0.54	36	79334	36	4	27	5	68
TMR_00596	tmRNA links to Rfam database...	0.36	0.34	0.39	32	78127	62	13	38	11	63
TMR_00599	tmRNA links to Rfam database...	0.28	0.28	0.27	20	63117	60	22	31	7	52
TMR_00600	tmRNA links to Rfam database...	0.44	0.32	0.62	37	79740	25	1	22	2	78
TMR_00601	tmRNA links to Rfam database...	0.37	0.24	0.59	10	58979	47	0	7	40	32
TMR_00603	tmRNA links to Rfam database...	0.80	0.70	0.91	30	60345	40	1	2	37	13
TMR_00604	tmRNA links to Rfam database...	0.68	0.63	0.74	71	62739	27	2	23	2	41
TMR_00605	tmRNA links to Rfam database...	0.53	0.49	0.58	53	74213	42	9	30	3	55
TMR_00606	tmRNA links to Rfam database...	0.41	0.40	0.43	43	68905	62	6	52	4	64
TMR_00609	tmRNA links to Rfam database...	0.69	0.68	0.71	77	63437	39	8	24	7	36
TMR_00610	tmRNA links to Rfam database...	0.75	0.71	0.80	74	62035	30	9	10	11	30
TMR_00611	tmRNA links to Rfam database...	0.63	0.65	0.62	66	61319	40	13	27	0	36
TMR_00612	tmRNA links to Rfam database...	0.47	0.46	0.47	48	60624	58	6	48	4	56
TMR_00614	tmRNA links to Rfam database...	0.72	0.67	0.78	70	60985	29	3	17	9	34
TMR_00615	tmRNA links to Rfam database...	0.70	0.69	0.72	66	63811	37	9	17	11	30
TMR_00616	tmRNA links to Rfam database...	0.45	0.41	0.49	41	67078	50	9	33	8	58
TMR_00617	tmRNA links to Rfam database...	0.31	0.34	0.29	20	34647	58	13	36	9	38
TMR_00623	tmRNA links to Rfam database...	0.55	0.51	0.59	55	61332	41	2	36	3	53
TMR_00624	tmRNA links to Rfam database...	0.85	0.75	0.96	81	62397	13	1	2	10	27
TMR_00625	tmRNA links to Rfam database...	0.30	0.30	0.31	32	78899	74	15	57	2	74
TMR_00626	tmRNA links to Rfam database...	0.54	0.50	0.60	54	67806	41	7	29	5	55
TMR_00680	tmRNA links to Rfam database...	0.27	0.26	0.28	26	67802	76	12	56	8	73
TMR_00681	tmRNA links to Rfam database...	0.60	0.56	0.66	54	65984	37	3	25	9	43
TMR_00683	tmRNA links to Rfam database...	0.33	0.30	0.36	30	82945	62	12	41	9	70
TMR_00686	tmRNA links to Rfam database...	0.53	0.46	0.61	50	71171	41	9	23	9	58
TMR_00687	tmRNA links to Rfam database...	0.35	0.36	0.35	40	71516	75	11	64	0	71
TMR_00696	tmRNA links to Rfam database...	0.29	0.25	0.34	28	84995	67	9	46	12	86
TMR_00698	tmRNA links to Rfam database...	0.39	0.35	0.45	36	63110	44	10	34	0	68
TMR_00699	tmRNA links to Rfam database...	0.54	0.46	0.63	47	67086	33	3	25	5	55
TMR_00702	tmRNA links to Rfam database...	0.35	0.27	0.46	27	67102	39	5	27	7	73
TMR_00703	tmRNA links to Rfam database...	0.56	0.48	0.64	48	67453	34	5	22	7	51
TMR_00706	tmRNA links to Rfam database...	0.65	0.57	0.75	59	66351	22	3	17	2	44
TMR_00711	tmRNA links to Rfam database...	0.60	0.58	0.62	57	67804	39	14	21	4	41
TMR_00712	tmRNA links to Rfam database...	0.34	0.31	0.36	34	78512	72	16	44	12	75
TMR_00716	tmRNA links to Rfam database...	0.24	0.20	0.29	20	62766	53	8	41	4	80

^top

Performance of Contrafold - scored lower in this pairwise comparison

1. Total counts & total scores for Contrafold

Total Base Pair Counts
Total TP	33968
Total TN	43339624
Total FP	31952
Total FP CONTRA	4632
Total FP INCONS	21113
Total FP COMP	6207
Total FN	28907

Total Scores
MCC	0.554
Average MCC ± 95% Confidence Intervals	0.550 ± 0.014
Sensitivity	0.540
Positive Predictive Value	0.569
Nr of predictions	610

^top

2. Individual counts for Contrafold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.80	0.77	0.83	58	34121	21	3	9	9	17
ASE_00002	RNaseP_arch links to Rfam database...	0.59	0.56	0.61	41	35444	30	2	24	4	32
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	66	47803	28	5	21	2	31
ASE_00005	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	65	57876	30	0	29	1	52
ASE_00006	RNaseP_bact_a links to Rfam database...	0.52	0.52	0.53	48	47495	47	7	36	4	45
ASE_00007	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.57	54	59591	45	1	39	5	56
ASE_00009	RNaseP_arch links to Rfam database...	0.66	0.64	0.68	43	26043	23	1	19	3	24
ASE_00012	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	61	73815	53	2	42	9	62
ASE_00014	RNaseP_arch links to Rfam database...	0.53	0.53	0.53	56	54179	54	6	44	4	50
ASE_00017	RNaseP_nuc links to Rfam database...	0.12	0.14	0.11	9	50957	94	18	56	20	55
ASE_00018	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.66	79	80481	42	2	39	1	55
ASE_00020	RNaseP_bact_a links to Rfam database...	0.68	0.62	0.74	78	73815	31	1	26	4	48
ASE_00021	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.69	97	104056	50	3	40	7	63
ASE_00022	RNaseP_bact_b links to Rfam database...	0.33	0.31	0.35	39	82918	77	2	69	6	85
ASE_00023	RNaseP_bact_a links to Rfam database...	0.68	0.68	0.68	86	84129	45	4	36	5	41
ASE_00025	RNaseP_nuc links to Rfam database...	0.35	0.38	0.32	27	78521	109	13	45	51	44
ASE_00026	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	57	59589	44	3	36	5	53
ASE_00028	RNaseP_bact_b links to Rfam database...	0.69	0.66	0.72	83	84551	44	4	28	12	43
ASE_00029	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.68	75	82917	40	7	29	4	47
ASE_00030	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.77	96	85367	30	4	24	2	49
ASE_00031	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.61	70	86622	51	2	42	7	56
ASE_00032	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	61	80097	47	3	39	5	57
ASE_00033	RNaseP_bact_a links to Rfam database...	0.52	0.46	0.60	56	64886	41	1	37	3	65
ASE_00035	RNaseP_bact_a links to Rfam database...	0.40	0.36	0.43	43	70401	62	4	52	6	75
ASE_00036	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.67	76	75742	43	7	30	6	56
ASE_00037	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.69	58	59256	28	1	25	2	52
ASE_00038	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	51	53540	41	6	31	4	50
ASE_00040	RNaseP_bact_a links to Rfam database...	0.14	0.14	0.15	19	78875	114	8	101	5	114
ASE_00041	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.73	66	57539	29	2	23	4	42
ASE_00042	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	79	89969	57	2	50	5	66
ASE_00044	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	70	54513	37	5	27	5	35
ASE_00046	RNaseP_bact_a links to Rfam database...	0.64	0.55	0.73	57	50325	23	1	20	2	46
ASE_00047	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.62	65	74200	42	1	39	2	65
ASE_00052	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.71	62	61338	29	0	25	4	50
ASE_00053	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.72	87	79280	39	10	24	5	46
ASE_00056	-	0.41	0.40	0.43	29	30808	46	4	35	7	43
ASE_00057	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	89	82091	41	9	26	6	45
ASE_00064	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	50	45374	37	2	25	10	39
ASE_00066	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	75	72276	39	3	36	0	55
ASE_00068	RNaseP_bact_a links to Rfam database...	0.69	0.61	0.79	52	37609	14	1	13	0	33
ASE_00069	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	83	82905	45	4	36	5	57
ASE_00074	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	58	67781	59	7	50	2	61
ASE_00075	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.80	111	108673	34	3	24	7	51
ASE_00076	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.50	52	68160	56	4	49	3	66
ASE_00077	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.78	58	45076	22	3	13	6	28
ASE_00078	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.81	55	43003	20	0	13	7	28
ASE_00079	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.60	53	55522	39	3	33	3	47
ASE_00080	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	70	71517	49	6	38	5	53
ASE_00081	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	56	49682	34	5	27	2	41
ASE_00082	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	83	70405	24	1	11	12	33
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	78	62385	25	0	18	7	32
ASE_00084	RNaseP_bact_a links to Rfam database...	0.74	0.73	0.76	72	53533	30	2	21	7	27
ASE_00087	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.76	103	88275	33	4	28	1	41
ASE_00089	-	0.50	0.46	0.55	36	31309	30	2	28	0	43
ASE_00090	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.66	68	55508	43	4	31	8	33
ASE_00092	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.85	90	63440	23	6	10	7	23
ASE_00096	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.80	71	63457	20	0	18	2	44
ASE_00099	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	61	64510	51	5	44	2	59
ASE_00100	RNaseP_nuc links to Rfam database...	0.26	0.28	0.24	21	82127	115	15	52	48	55
ASE_00102	RNaseP_bact_a links to Rfam database...	0.46	0.43	0.50	72	117711	76	7	65	4	94
ASE_00104	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.73	82	64148	33	4	27	2	37
ASE_00105	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.57	55	64165	49	7	34	8	56
ASE_00107	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	86	73030	38	4	33	1	41
ASE_00108	RNaseP_nuc links to Rfam database...	0.49	0.51	0.48	32	46904	72	10	25	37	31
ASE_00111	RNaseP_nuc links to Rfam database...	0.18	0.21	0.15	12	50008	84	20	46	18	45
ASE_00112	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.81	83	75364	29	4	15	10	33
ASE_00115	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.69	70	54513	40	6	26	8	31
ASE_00116	RNaseP_arch links to Rfam database...	0.46	0.42	0.50	28	31570	31	0	28	3	38
ASE_00118	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	63	60631	35	4	28	3	39
ASE_00119	RNaseP_bact_a links to Rfam database...	0.73	0.72	0.74	78	62729	31	3	25	3	30
ASE_00120	RNaseP_arch links to Rfam database...	0.60	0.57	0.64	54	46886	31	6	25	0	40
ASE_00121	RNaseP_arch links to Rfam database...	0.28	0.27	0.29	25	45063	64	6	56	2	67
ASE_00122	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.71	57	43285	25	1	22	2	31
ASE_00123	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	46	38427	34	4	26	4	39
ASE_00125	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	62	39264	22	3	11	8	26
ASE_00126	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.64	48	40395	34	2	25	7	34
ASE_00128	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.88	72	53219	16	1	9	6	28
ASE_00129	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	73	62737	30	1	24	5	38
ASE_00131	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.79	55	39270	25	1	14	10	30
ASE_00132	RNaseP_bact_a links to Rfam database...	0.57	0.48	0.67	46	50334	25	2	21	2	49
ASE_00134	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.46	39	50318	50	3	43	4	56
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.69	62	63100	35	1	27	7	47
ASE_00136	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.66	50	48129	37	1	25	11	42
ASE_00137	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	74	48426	20	4	12	4	24
ASE_00138	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.63	45	40399	27	7	19	1	36
ASE_00139	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.74	61	54203	25	0	21	4	43
ASE_00140	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.83	88	70770	19	3	15	1	37
ASE_00142	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.62	72	67045	50	5	39	6	50
ASE_00145	RNaseP_arch links to Rfam database...	0.60	0.59	0.60	66	70015	50	7	37	6	45
ASE_00146	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.53	60	70762	55	7	47	1	64
ASE_00148	RNaseP_arch links to Rfam database...	0.79	0.78	0.81	120	112426	34	5	24	5	34
ASE_00151	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	44	51909	52	11	39	2	54
ASE_00153	RNaseP_nuc links to Rfam database...	0.41	0.42	0.40	31	57553	80	7	39	34	42
ASE_00154	RNaseP_arch links to Rfam database...	0.74	0.72	0.76	77	65240	31	2	22	7	30
ASE_00155	RNaseP_arch links to Rfam database...	0.60	0.58	0.61	83	93392	56	4	49	3	59
ASE_00163	RNaseP_bact_a links to Rfam database...	0.34	0.32	0.37	30	53219	62	4	48	10	63
ASE_00165	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.77	67	52888	21	4	16	1	34
ASE_00168	RNaseP_nuc links to Rfam database...	0.32	0.38	0.27	24	60636	84	21	45	18	40
ASE_00169	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	53	57200	43	1	37	5	54
ASE_00170	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.70	57	48746	26	4	21	1	36
ASE_00171	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.77	67	48429	24	5	15	4	27
ASE_00172	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.88	82	58903	15	2	9	4	24
ASE_00174	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	63	60979	34	7	26	1	46
ASE_00175	RNaseP_bact_a links to Rfam database...	0.35	0.34	0.36	36	59932	73	3	60	10	71
ASE_00176	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.62	56	59941	40	4	30	6	54
ASE_00179	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.81	58	44181	21	3	11	7	26
ASE_00180	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.85	71	51276	18	4	9	5	29
ASE_00181	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	45	57532	55	5	48	2	61
ASE_00182	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	86	84132	38	2	35	1	50
ASE_00183	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.72	79	61315	40	2	29	9	34
ASE_00184	RNaseP_bact_a links to Rfam database...	0.76	0.77	0.75	79	54509	30	5	22	3	23
ASE_00185	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.80	88	73426	28	2	20	6	40
ASE_00186	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.79	95	78882	35	3	23	9	37
ASE_00187	RNaseP_arch links to Rfam database...	0.38	0.37	0.40	42	68531	68	5	57	6	73
ASE_00189	RNaseP_bact_b links to Rfam database...	0.59	0.53	0.66	54	63108	35	0	28	7	48
ASE_00190	RNaseP_bact_b links to Rfam database...	0.53	0.46	0.61	41	45384	33	3	23	7	49
ASE_00192	RNaseP_bact_b links to Rfam database...	0.65	0.61	0.70	81	84551	40	5	29	6	52
ASE_00194	RNaseP_bact_b links to Rfam database...	0.48	0.45	0.50	54	73429	59	4	49	6	65
ASE_00195	-	0.65	0.60	0.71	80	86208	35	2	30	3	53
ASE_00196	RNaseP_arch links to Rfam database...	0.75	0.76	0.74	57	31549	26	2	18	6	18
ASE_00197	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.66	85	89125	49	3	40	6	60
ASE_00198	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.73	70	52554	30	4	22	4	32
ASE_00203	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.82	71	46578	22	4	12	6	25
ASE_00204	RNaseP_bact_b links to Rfam database...	0.57	0.54	0.61	60	67798	46	5	33	8	52
ASE_00205	RNaseP_arch links to Rfam database...	0.45	0.46	0.45	41	45964	60	7	44	9	49
ASE_00209	RNaseP_arch links to Rfam database...	0.56	0.51	0.61	45	42997	31	3	26	2	43
ASE_00210	RNaseP_arch links to Rfam database...	0.58	0.60	0.57	39	27192	31	7	23	1	26
ASE_00212	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.71	95	93828	46	3	35	8	53
ASE_00213	RNaseP_arch links to Rfam database...	0.58	0.58	0.58	38	27196	30	5	22	3	28
ASE_00214	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.82	80	56183	27	3	14	10	23
ASE_00215	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	50	48429	39	4	33	2	49
ASE_00216	RNaseP_bact_a links to Rfam database...	0.58	0.59	0.58	48	39257	36	9	26	1	34
ASE_00217	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	35	40394	47	2	39	6	55
ASE_00221	RNaseP_bact_a links to Rfam database...	0.66	0.60	0.72	70	64523	31	1	26	4	47
ASE_00222	RNaseP_arch links to Rfam database...	0.72	0.71	0.74	111	111950	46	7	33	6	46
ASE_00227	RNaseP_bact_a links to Rfam database...	0.31	0.29	0.34	39	78887	77	6	71	0	94
ASE_00228	RNaseP_bact_a links to Rfam database...	0.79	0.78	0.80	67	46887	20	8	9	3	19
ASE_00229	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	56	42407	28	4	19	5	31
ASE_00231	RNaseP_bact_a links to Rfam database...	0.77	0.75	0.79	72	47804	20	3	16	1	24
ASE_00232	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.64	54	38418	33	10	21	2	30
ASE_00234	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.60	64	75360	47	3	39	5	65
ASE_00237	RNaseP_nuc links to Rfam database...	0.08	0.09	0.07	5	45683	79	14	51	14	51
ASE_00238	RNaseP_bact_a links to Rfam database...	0.68	0.62	0.75	71	64166	26	1	23	2	43
ASE_00240	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	36	46581	51	1	47	3	57
ASE_00241	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.85	64	43881	17	2	9	6	23
ASE_00242	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.79	81	60973	24	6	15	3	31
ASE_00246	RNaseP_nuc links to Rfam database...	0.36	0.37	0.34	25	48132	70	12	36	22	42
ASE_00247	RNaseP_nuc links to Rfam database...	0.16	0.19	0.14	12	54201	94	19	53	22	52
ASE_00248	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.67	66	62383	36	1	31	4	48
ASE_00250	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.66	75	78889	45	2	37	6	56
ASE_00252	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.80	117	115293	39	2	28	9	51
ASE_00254	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.81	60	36782	20	5	9	6	22
ASE_00255	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.67	80	74571	46	4	36	6	50
ASE_00257	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	72	50951	21	2	15	4	25
ASE_00259	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.51	50	73054	53	5	44	4	71
ASE_00263	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	67	70383	50	4	46	0	53
ASE_00264	RNaseP_nuc links to Rfam database...	0.43	0.43	0.43	43	49041	67	9	48	10	57
ASE_00267	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.52	41	45071	44	3	35	6	47
ASE_00270	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.75	89	72271	33	3	27	3	39
ASE_00274	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.51	48	55516	49	6	41	2	55
ASE_00277	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	54	48119	35	5	27	3	37
ASE_00279	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	52	53202	48	8	39	1	49
ASE_00280	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	57	51914	35	4	28	3	41
ASE_00281	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.75	57	44475	26	1	18	7	31
ASE_00282	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	60	77698	59	9	48	2	67
ASE_00283	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	67	61674	41	4	31	6	40
ASE_00284	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	68	58209	40	6	28	6	40
ASE_00285	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	96	68896	23	3	11	9	26
ASE_00286	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	64	46582	24	1	18	5	28
ASE_00287	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	67	54853	32	3	23	6	36
ASE_00288	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.69	51	45982	27	3	20	4	42
ASE_00289	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.87	116	100891	24	2	16	6	41
ASE_00291	-	0.51	0.49	0.53	46	48430	43	3	37	3	48
ASE_00292	RNaseP_bact_a links to Rfam database...	0.59	0.53	0.66	73	81699	43	2	36	5	65
ASE_00294	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	116	114333	36	3	29	4	55
ASE_00295	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.70	81	73804	37	3	32	2	50
ASE_00296	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	78	91670	61	5	53	3	67
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.68	66	52878	37	5	26	6	32
ASE_00298	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	31	67422	79	7	68	4	82
ASE_00299	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.52	51	49356	54	3	45	6	49
ASE_00313	RNaseP_nuc links to Rfam database...	0.54	0.56	0.52	50	62384	69	9	38	22	39
ASE_00316	RNaseP_nuc links to Rfam database...	0.66	0.64	0.68	63	107788	83	5	24	54	35
ASE_00318	RNaseP_bact_b links to Rfam database...	0.63	0.60	0.66	71	80093	40	12	24	4	47
ASE_00327	RNaseP_nuc links to Rfam database...	0.81	0.80	0.83	71	57205	34	3	12	19	18
ASE_00328	RNaseP_bact_b links to Rfam database...	0.63	0.59	0.67	66	72673	41	5	27	9	46
ASE_00330	RNaseP_nuc links to Rfam database...	0.78	0.78	0.78	70	56190	41	1	19	21	20
ASE_00332	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	76	81678	60	2	54	4	62
ASE_00335	RNaseP_bact_b links to Rfam database...	0.62	0.57	0.68	66	75369	44	2	29	13	50
ASE_00337	RNaseP_nuc links to Rfam database...	0.52	0.54	0.51	38	39266	51	5	31	15	33
ASE_00338	RNaseP_nuc links to Rfam database...	0.68	0.66	0.71	65	66338	45	4	23	18	33
ASE_00339	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.78	84	80092	36	0	24	12	35
ASE_00340	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	38	45978	44	4	36	4	47
ASE_00342	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.70	74	62376	33	4	27	2	41
ASE_00343	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.75	73	83339	39	1	23	15	40
ASE_00346	RNaseP_arch links to Rfam database...	0.34	0.34	0.35	33	48111	67	4	57	6	64
ASE_00353	RNaseP_bact_a links to Rfam database...	0.77	0.75	0.78	80	57868	29	1	21	7	27
ASE_00359	RNaseP_arch links to Rfam database...	0.49	0.48	0.51	38	42703	44	3	34	7	42
ASE_00360	RNaseP_arch links to Rfam database...	0.31	0.31	0.32	20	29341	43	8	34	1	45
ASE_00361	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.67	77	75351	42	8	30	4	50
ASE_00362	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.60	54	48115	38	2	34	2	37
ASE_00363	RNaseP_bact_a links to Rfam database...	0.78	0.77	0.80	72	51270	25	1	17	7	22
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.77	75	54187	33	3	20	10	30
ASE_00366	RNaseP_bact_a links to Rfam database...	0.37	0.38	0.36	37	58550	68	7	59	2	61
ASE_00367	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.50	43	42985	49	8	35	6	43
ASE_00369	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.78	77	55846	28	1	21	6	30
ASE_00370	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.62	53	41820	35	4	28	3	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	68	51908	33	4	23	6	32
ASE_00374	RNaseP_bact_a links to Rfam database...	0.74	0.73	0.74	64	44764	23	5	17	1	24
ASE_00375	RNaseP_bact_a links to Rfam database...	0.85	0.77	0.93	85	60287	12	1	5	6	25
ASE_00376	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.63	63	56853	41	4	33	4	42
ASE_00377	RNaseP_bact_a links to Rfam database...	0.77	0.76	0.78	81	57526	29	4	19	6	26
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	52	45973	39	4	27	8	37
ASE_00380	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.67	56	54862	34	7	21	6	43
ASE_00382	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.59	47	41826	36	6	26	4	37
ASE_00383	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.75	76	54514	32	3	22	7	29
ASE_00384	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	70	48428	22	2	16	4	22
ASE_00385	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.59	47	41826	33	5	27	1	34
ASE_00386	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	63	50310	36	1	29	6	33
ASE_00387	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	68	55852	27	1	24	2	36
ASE_00388	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	60	45676	22	1	16	5	29
ASE_00390	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.67	54	42114	37	3	24	10	31
ASE_00393	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.77	63	47813	26	2	17	7	30
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.80	0.81	74	46880	20	4	13	3	19
ASE_00395	RNaseP_bact_a links to Rfam database...	0.68	0.68	0.69	57	41533	29	5	21	3	27
ASE_00396	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	45	41538	34	2	31	1	38
ASE_00397	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.65	67	54512	41	6	30	5	38
ASE_00398	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.74	65	55857	30	1	22	7	39
ASE_00400	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	67	57874	31	1	28	2	39
ASE_00401	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.64	79	76904	46	7	38	1	47
ASE_00402	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	63	42410	18	1	12	5	22
ASE_00403	RNaseP_bact_a links to Rfam database...	0.39	0.36	0.41	39	55850	61	3	53	5	68
ASE_00404	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	45	42989	38	2	35	1	40
ASE_00406	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.74	67	48737	29	6	18	5	27
ASE_00408	-	0.77	0.76	0.77	54	32315	19	2	14	3	17
ASE_00409	-	0.69	0.63	0.75	52	40972	18	0	17	1	31
ASE_00411	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	47	49376	34	7	25	2	42
ASE_00412	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	62	58218	40	4	27	9	43
ASE_00413	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.50	39	44473	43	10	29	4	42
ASE_00414	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	43	46272	52	1	44	7	52
ASE_00415	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	54	54849	50	3	40	7	49
ASE_00416	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.63	74	77304	51	5	38	8	53
ASE_00417	RNaseP_arch links to Rfam database...	0.47	0.47	0.47	47	54516	55	2	50	3	53
ASE_00418	RNaseP_arch links to Rfam database...	0.06	0.07	0.07	5	38706	72	5	65	2	70
ASE_00419	RNaseP_bact_a links to Rfam database...	0.77	0.77	0.78	79	54845	24	9	13	2	24
ASE_00422	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.68	63	46879	34	5	24	5	31
ASE_00423	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	72	56847	36	7	27	2	37
ASE_00426	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.63	57	60984	35	7	27	1	51
ASE_00428	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.73	78	76529	38	2	27	9	47
ASE_00429	-	0.44	0.41	0.48	27	28147	36	4	25	7	39
ASE_00430	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	66	46877	35	5	23	7	31
ASE_00431	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.58	48	46277	49	0	35	14	47
ASE_00434	RNaseP_bact_b links to Rfam database...	0.67	0.63	0.71	69	68168	42	3	25	14	41
ASE_00437	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	55	79296	53	1	49	3	80
ASE_00438	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.71	71	65966	32	2	27	3	45
ASE_00441	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	85	64166	20	2	8	10	27
ASE_00447	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.79	79	60278	27	0	21	6	37
ASE_00448	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	42	64162	65	8	49	8	70
ASE_00451	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	86	70767	24	2	21	1	39
CRW_00004	-	0.58	0.60	0.56	79	154149	98	8	54	36	52
CRW_00005	-	0.62	0.64	0.61	84	137937	85	8	46	31	48
CRW_00007	-	0.45	0.49	0.42	65	144835	100	28	63	9	68
CRW_00009	-	0.47	0.49	0.47	67	137931	96	5	72	19	71
CRW_00010	-	0.83	0.83	0.83	105	102704	38	3	19	16	21
CRW_00011	-	0.83	0.85	0.81	117	118196	48	5	23	20	21
CRW_00012	-	0.55	0.55	0.56	78	147013	74	11	51	12	63
CRW_00013	Intron_gpI links to Rfam database...	0.43	0.39	0.47	45	103644	80	11	40	29	70
CRW_00014	-	0.38	0.37	0.39	46	103621	85	10	63	12	77
CRW_00016	Intron_gpI links to Rfam database...	0.73	0.68	0.79	81	77319	37	0	21	16	39
CRW_00017	-	0.66	0.68	0.64	62	92138	53	13	22	18	29
CRW_00018	-	0.58	0.56	0.59	68	182595	102	8	39	55	53
CRW_00019	-	0.78	0.77	0.79	105	127632	56	1	27	28	32
CRW_00423	-	0.22	0.20	0.25	38	242405	124	16	97	11	151
CRW_00429	-	0.31	0.27	0.36	63	306763	117	19	91	7	170
CRW_00605	-	0.73	0.70	0.77	49	183857	120	3	12	105	21
CRW_00608	-	0.84	0.78	0.90	62	35709	17	0	7	10	17
CRW_00610	Intron_gpI links to Rfam database...	0.50	0.49	0.51	40	36237	41	9	29	3	41
CRW_00611	-	0.89	0.81	0.97	61	31312	9	0	2	7	14
CRW_00612	-	0.53	0.51	0.55	47	270395	177	1	37	139	46
CRW_00613	Intron_gpI links to Rfam database...	0.79	0.77	0.81	60	34906	22	1	13	8	18
CRW_00614	Intron_gpI links to Rfam database...	0.24	0.25	0.23	14	121709	121	7	41	73	43
CRW_00618	Intron_gpI links to Rfam database...	0.20	0.21	0.19	13	56213	75	8	46	21	48
CRW_00619	Intron_gpI links to Rfam database...	0.45	0.40	0.52	29	164969	110	5	22	83	44
CRW_00620	Intron_gpI links to Rfam database...	0.18	0.22	0.15	14	150884	136	23	54	59	49
CRW_00621	Intron_gpI links to Rfam database...	0.37	0.35	0.38	25	153116	137	6	34	97	46
CRW_00623	Intron_gpI links to Rfam database...	0.25	0.20	0.31	17	129740	100	5	33	62	66
CRW_00626	-	0.79	0.79	0.80	82	100922	54	2	19	33	22
CRW_00629	-	0.58	0.58	0.59	71	91257	53	13	37	3	51
CRW_00632	-	0.72	0.71	0.73	91	82904	39	3	30	6	37
CRW_00633	Intron_gpI links to Rfam database...	0.58	0.55	0.62	58	63453	37	8	27	2	48
CRW_00634	Intron_gpI links to Rfam database...	0.58	0.59	0.57	55	64524	43	12	29	2	39
CRW_00635	-	0.49	0.47	0.51	64	109152	73	11	51	11	73
CRW_00636	-	0.56	0.58	0.55	83	114809	75	11	57	7	60
CRW_00637	-	0.42	0.41	0.42	65	133750	95	8	80	7	93
CRW_00639	-	0.41	0.42	0.39	58	126609	92	22	67	3	80
CRW_00641	-	0.85	0.87	0.84	66	39824	21	4	9	8	10
CRW_00642	-	0.53	0.58	0.48	38	47198	54	12	30	12	27
CRW_00643	-	0.39	0.43	0.36	53	123108	99	27	68	4	69
CRW_00645	-	0.59	0.61	0.58	41	35440	40	5	25	10	26
CRW_00646	-	0.52	0.53	0.51	34	34913	41	7	26	8	30
CRW_00648	-	0.70	0.68	0.72	101	137935	54	8	31	15	47
CRW_00649	-	0.72	0.74	0.70	92	204348	116	7	33	76	32
CRW_00650	-	0.49	0.49	0.48	70	112904	82	8	68	6	72
CRW_00651	-	0.49	0.51	0.47	62	99995	78	14	57	7	59
CRW_00652	-	0.60	0.65	0.56	84	132204	84	14	53	17	46
CRW_00653	-	0.92	0.90	0.93	121	94700	14	1	8	5	13
CRW_00654	-	0.85	0.81	0.89	101	78096	19	4	9	6	23
CRW_00655	-	0.83	0.79	0.88	98	89141	20	2	12	6	26
CRW_00656	-	0.66	0.64	0.68	82	90404	47	12	27	8	47
CRW_00657	-	0.78	0.77	0.78	105	105896	42	6	23	13	31
CRW_00658	-	0.44	0.46	0.42	47	74579	74	18	47	9	55
CRW_00659	-	0.43	0.48	0.40	29	32312	52	12	32	8	32
CRW_00660	-	0.46	0.47	0.46	28	22094	36	3	30	3	32
CRW_00661	-	0.09	0.10	0.08	5	24250	57	22	33	2	46
CRW_00662	-	0.40	0.40	0.39	26	28614	47	7	33	7	39
CRW_00663	-	0.10	0.10	0.10	6	26044	58	2	54	2	55
CRW_00664	-	0.23	0.24	0.22	19	53543	74	13	53	8	59
CRW_00665	-	0.18	0.19	0.18	9	23602	42	12	30	0	39
CRW_00666	-	0.59	0.59	0.59	74	96016	57	7	44	6	52
CRW_00668	-	0.70	0.72	0.68	108	163719	72	12	39	21	42
CRW_00669	-	0.66	0.61	0.72	73	97359	45	3	26	16	46
CRW_00670	Intron_gpI links to Rfam database...	0.76	0.71	0.83	85	70022	19	0	18	1	35
CRW_00671	Intron_gpI links to Rfam database...	0.73	0.70	0.77	82	62728	31	1	24	6	35
CRW_00672	Intron_gpI links to Rfam database...	0.53	0.52	0.55	58	72284	55	8	40	7	53
CRW_00673	-	0.77	0.77	0.77	81	100023	44	15	9	20	24
CRW_00674	Intron_gpI links to Rfam database...	0.70	0.66	0.74	82	83325	34	5	24	5	42
CRW_00676	Intron_gpI links to Rfam database...	0.42	0.44	0.40	51	93400	81	20	57	4	64
CRW_00677	-	0.61	0.61	0.62	64	71906	47	8	32	7	41
CRW_00679	-	0.42	0.43	0.41	46	76524	72	15	51	6	61
CRW_00681	-	0.54	0.57	0.52	64	112927	79	18	41	20	48
CRW_00685	-	0.29	0.34	0.25	36	156936	130	34	74	22	70
CRW_00686	-	0.65	0.64	0.66	80	95145	52	5	36	11	45
CRW_00687	-	0.60	0.64	0.57	42	28606	33	7	25	1	24
CRW_00688	-	0.85	0.82	0.89	47	21892	10	2	4	4	10
CRW_00689	-	0.67	0.69	0.65	53	33588	34	7	22	5	24
CRW_00690	-	0.76	0.72	0.81	50	33349	21	2	10	9	19
CRW_00691	-	0.63	0.63	0.63	42	27194	30	2	23	5	25
CRW_00692	Intron_gpI links to Rfam database...	0.45	0.44	0.47	40	68549	53	16	30	7	50
CRW_00693	-	0.69	0.69	0.69	84	89131	58	3	35	20	38
CRW_00694	-	0.66	0.66	0.67	80	85785	46	4	36	6	42
CRW_00699	-	0.75	0.74	0.76	93	91684	35	2	27	6	33
CRW_00700	-	0.76	0.73	0.78	108	180762	61	1	30	30	39
CRW_00703	-	0.58	0.61	0.56	40	40399	37	7	24	6	26
CRW_00714	-	0.81	0.78	0.86	83	186258	68	3	11	54	24
CRW_00715	-	0.92	0.87	0.98	90	69286	5	0	2	3	14
CRW_00716	-	0.87	0.84	0.89	75	193669	86	2	7	77	14
CRW_00717	-	0.46	0.44	0.49	65	153603	79	14	53	12	83
CRW_00718	-	0.81	0.75	0.88	143	189874	42	2	17	23	48
CRW_00719	-	0.67	0.64	0.71	58	230099	116	7	17	92	33
CRW_00720	-	0.54	0.52	0.56	47	208251	105	7	30	68	44
CRW_00721	-	0.63	0.65	0.61	44	58581	52	8	20	24	24
CRW_00764	-	0.12	0.10	0.14	20	252968	135	29	99	7	176
CRW_00775	-	0.18	0.16	0.22	33	314670	125	25	93	7	179
CRW_00815	-	0.66	0.68	0.63	108	159724	70	17	46	7	50
CRW_00816	-	0.41	0.42	0.39	54	143779	97	10	73	14	75
CRW_00820	-	0.65	0.61	0.68	89	136372	51	4	38	9	56
PDB_00072	-	0.49	0.50	0.49	105	148025	110	9	101	0	105
PDB_00078	-	0.55	0.54	0.55	62	49658	50	6	44	0	53
PDB_00079	-	0.70	0.67	0.73	95	121640	68	9	27	32	47
PDB_00278	-	0.20	0.19	0.21	14	24909	53	4	49	0	58
PDB_00403	-	0.62	0.60	0.63	92	124604	69	16	38	15	61
PDB_00423	-	0.15	0.15	0.16	11	26727	58	6	52	0	63
PDB_00701	-	0.16	0.16	0.16	17	45344	90	7	83	0	92
PDB_00747	-	0.82	0.75	0.90	60	24464	8	1	6	1	20
PDB_00827	Intron_gpI links to Rfam database...	0.77	0.65	0.90	53	26969	8	0	6	2	28
PDB_00917	-	0.51	0.49	0.53	47	35156	48	2	40	6	48
PDB_00919	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.59	54	44162	41	5	32	4	49
PDB_01129	-	0.30	0.28	0.32	20	35448	48	9	34	5	51
PDB_01157	-	0.48	0.46	0.51	45	49997	45	8	36	1	53
PDB_01166	-	0.55	0.53	0.57	112	181910	90	17	67	6	100
RFA_00597	Telomerase-vert links to Rfam database...	0.60	0.61	0.59	67	97789	69	16	31	22	42
RFA_00598	Telomerase-vert links to Rfam database...	0.47	0.47	0.48	47	84569	79	6	44	29	54
RFA_00599	Telomerase-vert links to Rfam database...	0.71	0.73	0.70	81	101359	59	10	25	24	30
RFA_00600	Telomerase-vert links to Rfam database...	0.67	0.72	0.62	72	120178	86	21	24	41	28
RFA_00601	Telomerase-vert links to Rfam database...	0.33	0.36	0.30	41	99097	108	37	60	11	73
RFA_00602	Telomerase-vert links to Rfam database...	0.63	0.67	0.58	78	101341	68	25	31	12	38
TMR_00007	tmRNA links to Rfam database...	0.80	0.75	0.84	81	61680	22	3	12	7	27
TMR_00008	tmRNA links to Rfam database...	0.60	0.58	0.63	62	65967	48	11	26	11	44
TMR_00010	tmRNA links to Rfam database...	0.36	0.34	0.37	33	57881	62	6	50	6	63
TMR_00012	tmRNA links to Rfam database...	0.40	0.42	0.39	34	64533	74	17	36	21	47
TMR_00014	tmRNA links to Rfam database...	0.72	0.70	0.74	77	68531	37	11	16	10	33
TMR_00017	tmRNA links to Rfam database...	0.49	0.44	0.54	45	67078	42	5	33	4	57
TMR_00018	tmRNA links to Rfam database...	0.38	0.37	0.40	34	64535	55	13	38	4	58
TMR_00028	tmRNA links to Rfam database...	0.69	0.68	0.70	66	62741	35	5	23	7	31
TMR_00030	tmRNA links to Rfam database...	0.37	0.35	0.39	39	75754	67	10	52	5	72
TMR_00034	tmRNA links to Rfam database...	0.62	0.62	0.62	68	59922	48	10	31	7	42
TMR_00035	tmRNA links to Rfam database...	0.52	0.55	0.49	54	67786	63	13	43	7	44
TMR_00036	tmRNA links to Rfam database...	0.69	0.61	0.77	62	90444	51	5	14	32	39
TMR_00038	tmRNA links to Rfam database...	0.26	0.25	0.26	28	71146	85	15	64	6	82
TMR_00042	tmRNA links to Rfam database...	0.29	0.30	0.29	29	62736	74	13	57	4	69
TMR_00046	tmRNA links to Rfam database...	0.60	0.58	0.62	56	62745	44	6	28	10	40
TMR_00047	tmRNA links to Rfam database...	0.23	0.25	0.22	14	48452	68	13	37	18	43
TMR_00048	tmRNA links to Rfam database...	0.40	0.41	0.40	39	64882	69	13	46	10	56
TMR_00049	tmRNA links to Rfam database...	0.58	0.56	0.59	49	63107	50	5	29	16	38
TMR_00051	tmRNA links to Rfam database...	0.66	0.63	0.69	59	65618	44	2	24	18	35
TMR_00055	tmRNA links to Rfam database...	0.43	0.40	0.46	46	78902	56	15	40	1	68
TMR_00057	tmRNA links to Rfam database...	0.24	0.28	0.21	22	73815	93	19	64	10	57
TMR_00061	tmRNA links to Rfam database...	0.36	0.34	0.37	34	59593	68	8	50	10	65
TMR_00062	tmRNA links to Rfam database...	0.59	0.61	0.57	63	78496	63	7	40	16	41
TMR_00064	tmRNA links to Rfam database...	0.39	0.38	0.41	39	76932	57	17	40	0	64
TMR_00065	tmRNA links to Rfam database...	0.49	0.49	0.50	52	76531	57	16	37	4	54
TMR_00067	tmRNA links to Rfam database...	0.45	0.45	0.46	51	82104	66	7	53	6	63
TMR_00073	tmRNA links to Rfam database...	0.66	0.62	0.71	72	65602	30	5	24	1	45
TMR_00076	tmRNA links to Rfam database...	0.47	0.48	0.46	48	70771	68	19	38	11	52
TMR_00080	tmRNA links to Rfam database...	0.43	0.42	0.44	40	70410	50	15	35	0	56
TMR_00081	tmRNA links to Rfam database...	0.50	0.43	0.58	46	67082	33	8	25	0	60
TMR_00082	tmRNA links to Rfam database...	0.29	0.28	0.30	27	67807	64	9	53	2	69
TMR_00083	tmRNA links to Rfam database...	0.68	0.67	0.69	70	68163	42	4	28	10	35
TMR_00092	tmRNA links to Rfam database...	0.62	0.65	0.59	66	67417	54	11	34	9	35
TMR_00093	tmRNA links to Rfam database...	0.41	0.39	0.43	40	64167	63	14	40	9	62
TMR_00096	tmRNA links to Rfam database...	0.30	0.28	0.33	28	64894	67	13	45	9	72
TMR_00101	tmRNA links to Rfam database...	0.62	0.61	0.64	65	64160	50	8	28	14	42
TMR_00102	tmRNA links to Rfam database...	0.34	0.34	0.35	34	64163	68	12	52	4	67
TMR_00103	tmRNA links to Rfam database...	0.55	0.58	0.53	63	64142	60	16	40	4	45
TMR_00104	-	0.09	0.10	0.09	7	66714	79	25	49	5	63
TMR_00106	tmRNA links to Rfam database...	0.56	0.51	0.62	61	90001	42	12	26	4	59
TMR_00109	tmRNA links to Rfam database...	0.41	0.42	0.40	51	88283	78	21	55	2	71
TMR_00111	tmRNA links to Rfam database...	0.54	0.52	0.56	63	90413	54	12	37	5	59
TMR_00116	tmRNA links to Rfam database...	0.74	0.67	0.81	70	64894	34	1	15	18	34
TMR_00117	tmRNA links to Rfam database...	0.73	0.70	0.75	83	80090	36	9	18	9	35
TMR_00118	tmRNA links to Rfam database...	0.53	0.52	0.55	62	81293	60	7	44	9	58
TMR_00119	tmRNA links to Rfam database...	0.65	0.63	0.67	66	71912	41	4	28	9	38
TMR_00123	tmRNA links to Rfam database...	0.53	0.51	0.55	52	66335	52	4	39	9	49
TMR_00124	tmRNA links to Rfam database...	0.59	0.59	0.60	58	70403	51	13	26	12	40
TMR_00125	tmRNA links to Rfam database...	0.28	0.26	0.31	26	64176	63	13	46	4	73
TMR_00127	tmRNA links to Rfam database...	0.61	0.62	0.61	60	62737	52	3	35	14	37
TMR_00128	tmRNA links to Rfam database...	0.34	0.34	0.33	33	60976	66	20	46	0	63
TMR_00131	tmRNA links to Rfam database...	0.56	0.53	0.60	52	64893	43	5	30	8	47
TMR_00135	tmRNA links to Rfam database...	0.65	0.65	0.65	64	62736	50	6	29	15	35
TMR_00136	tmRNA links to Rfam database...	0.20	0.22	0.19	22	74577	95	21	71	3	79
TMR_00137	tmRNA links to Rfam database...	0.37	0.34	0.41	30	61001	53	6	38	9	59
TMR_00139	tmRNA links to Rfam database...	0.63	0.67	0.59	61	62025	53	19	23	11	30
TMR_00140	tmRNA links to Rfam database...	0.55	0.55	0.56	55	73822	64	3	40	21	45
TMR_00142	tmRNA links to Rfam database...	0.57	0.58	0.56	59	70771	61	13	33	15	43
TMR_00143	tmRNA links to Rfam database...	0.45	0.46	0.45	47	64516	68	10	47	11	56
TMR_00144	tmRNA links to Rfam database...	0.40	0.37	0.43	38	74217	55	8	42	5	65
TMR_00146	tmRNA links to Rfam database...	0.85	0.90	0.79	38	32083	35	7	3	25	4
TMR_00150	tmRNA links to Rfam database...	0.72	0.71	0.73	30	43030	50	2	9	39	12
TMR_00152	tmRNA links to Rfam database...	0.33	0.31	0.36	36	81306	73	12	52	9	79
TMR_00155	tmRNA links to Rfam database...	0.62	0.60	0.64	62	61679	47	8	27	12	42
TMR_00156	tmRNA links to Rfam database...	0.61	0.59	0.64	57	60289	36	6	26	4	40
TMR_00158	tmRNA links to Rfam database...	0.51	0.51	0.51	50	60628	54	7	41	6	49
TMR_00159	tmRNA links to Rfam database...	0.62	0.60	0.65	55	62043	46	7	23	16	37
TMR_00160	tmRNA links to Rfam database...	0.50	0.49	0.51	47	64527	57	13	33	11	48
TMR_00164	tmRNA links to Rfam database...	0.42	0.40	0.45	42	66702	59	9	42	8	64
TMR_00165	tmRNA links to Rfam database...	0.48	0.46	0.49	45	61685	53	9	37	7	52
TMR_00166	tmRNA links to Rfam database...	0.39	0.38	0.41	38	61683	65	5	50	10	63
TMR_00168	tmRNA links to Rfam database...	0.72	0.68	0.76	78	60972	32	0	25	7	36
TMR_00173	tmRNA links to Rfam database...	0.32	0.36	0.29	15	42143	71	13	24	34	27
TMR_00179	tmRNA links to Rfam database...	0.44	0.46	0.43	45	67056	67	10	50	7	53
TMR_00180	tmRNA links to Rfam database...	0.72	0.72	0.72	71	67063	42	5	22	15	28
TMR_00182	tmRNA links to Rfam database...	0.22	0.22	0.22	22	66330	84	10	68	6	80
TMR_00183	tmRNA links to Rfam database...	0.25	0.24	0.25	25	63091	80	10	64	6	78
TMR_00184	tmRNA links to Rfam database...	0.41	0.41	0.41	42	63087	73	4	57	12	60
TMR_00193	tmRNA links to Rfam database...	0.56	0.55	0.56	44	59262	47	6	28	13	36
TMR_00194	tmRNA links to Rfam database...	0.51	0.46	0.56	43	62758	42	2	32	8	50
TMR_00196	tmRNA links to Rfam database...	0.45	0.42	0.48	41	60989	55	11	34	10	56
TMR_00199	tmRNA links to Rfam database...	0.57	0.59	0.56	54	62738	51	18	25	8	38
TMR_00200	-	0.41	0.40	0.42	30	41544	52	7	35	10	45
TMR_00204	tmRNA links to Rfam database...	0.56	0.53	0.61	51	60294	43	10	23	10	46
TMR_00207	tmRNA links to Rfam database...	0.43	0.40	0.48	41	72304	50	5	40	5	62
TMR_00223	tmRNA links to Rfam database...	0.40	0.38	0.43	36	64177	53	10	38	5	59
TMR_00224	tmRNA links to Rfam database...	0.49	0.45	0.55	45	64898	42	7	30	5	56
TMR_00226	tmRNA links to Rfam database...	0.36	0.36	0.36	38	69644	77	17	52	8	67
TMR_00227	tmRNA links to Rfam database...	0.38	0.39	0.37	39	70019	72	12	55	5	62
TMR_00228	tmRNA links to Rfam database...	0.32	0.34	0.30	37	88287	91	21	65	5	71
TMR_00234	tmRNA links to Rfam database...	0.36	0.32	0.40	33	58913	56	6	44	6	69
TMR_00238	tmRNA links to Rfam database...	0.31	0.33	0.29	33	84552	87	24	57	6	68
TMR_00239	tmRNA links to Rfam database...	0.50	0.51	0.50	49	61678	56	9	40	7	47
TMR_00240	tmRNA links to Rfam database...	0.60	0.61	0.60	52	63103	43	14	21	8	33
TMR_00246	-	0.26	0.29	0.22	10	78165	112	4	31	77	24
TMR_00248	tmRNA links to Rfam database...	0.42	0.39	0.45	15	54252	64	3	15	46	23
TMR_00257	tmRNA links to Rfam database...	0.25	0.22	0.27	22	67080	65	2	57	6	76
TMR_00259	tmRNA links to Rfam database...	0.38	0.35	0.41	36	67809	51	10	41	0	67
TMR_00261	tmRNA links to Rfam database...	0.58	0.60	0.55	61	66685	58	17	32	9	40
TMR_00262	tmRNA links to Rfam database...	0.46	0.46	0.46	48	74200	61	16	41	4	56
TMR_00271	tmRNA links to Rfam database...	0.64	0.62	0.67	56	64177	40	6	22	12	35
TMR_00274	tmRNA links to Rfam database...	0.60	0.59	0.60	62	66692	47	13	28	6	43
TMR_00278	tmRNA links to Rfam database...	0.42	0.43	0.42	44	67790	71	5	57	9	58
TMR_00279	tmRNA links to Rfam database...	0.53	0.54	0.52	51	68908	60	8	39	13	43
TMR_00280	tmRNA links to Rfam database...	0.60	0.62	0.58	63	65958	64	4	41	19	38
TMR_00283	tmRNA links to Rfam database...	0.65	0.63	0.67	60	65252	41	5	24	12	36
TMR_00289	tmRNA links to Rfam database...	0.53	0.52	0.54	51	67066	54	5	39	10	47
TMR_00290	tmRNA links to Rfam database...	0.61	0.59	0.64	54	64177	43	4	26	13	38
TMR_00296	tmRNA links to Rfam database...	0.49	0.50	0.48	49	68903	59	12	42	5	49
TMR_00298	tmRNA links to Rfam database...	0.54	0.51	0.56	52	68172	50	11	30	9	49
TMR_00300	tmRNA links to Rfam database...	0.63	0.63	0.63	71	70388	54	11	30	13	41
TMR_00301	tmRNA links to Rfam database...	0.58	0.51	0.66	49	82141	40	5	20	15	47
TMR_00302	tmRNA links to Rfam database...	0.33	0.35	0.31	33	77314	82	24	50	8	61
TMR_00305	tmRNA links to Rfam database...	0.59	0.57	0.62	58	60982	49	8	27	14	44
TMR_00306	tmRNA links to Rfam database...	0.67	0.68	0.67	72	64153	49	5	31	13	34
TMR_00310	tmRNA links to Rfam database...	0.56	0.55	0.58	54	63810	50	9	30	11	44
TMR_00317	tmRNA links to Rfam database...	0.68	0.68	0.68	69	68164	38	6	26	6	33
TMR_00331	tmRNA links to Rfam database...	0.37	0.40	0.34	33	66697	80	10	55	15	49
TMR_00332	tmRNA links to Rfam database...	0.45	0.40	0.50	40	67081	45	2	38	5	59
TMR_00334	tmRNA links to Rfam database...	0.38	0.37	0.40	37	66703	62	9	46	7	64
TMR_00337	tmRNA links to Rfam database...	0.48	0.45	0.50	54	82921	57	11	42	4	65
TMR_00340	tmRNA links to Rfam database...	0.51	0.52	0.51	42	64179	66	8	32	26	39
TMR_00341	tmRNA links to Rfam database...	0.27	0.28	0.26	26	63091	81	16	57	8	66
TMR_00343	tmRNA links to Rfam database...	0.37	0.35	0.39	37	64884	68	6	53	9	68
TMR_00345	tmRNA links to Rfam database...	0.70	0.68	0.72	71	63805	37	7	20	10	33
TMR_00346	tmRNA links to Rfam database...	0.53	0.53	0.54	50	64168	47	13	30	4	44
TMR_00348	tmRNA links to Rfam database...	0.32	0.29	0.35	29	77337	72	13	42	17	70
TMR_00352	tmRNA links to Rfam database...	0.14	0.16	0.12	12	95167	98	32	55	11	63
TMR_00353	tmRNA links to Rfam database...	0.52	0.55	0.50	58	84139	70	21	37	12	47
TMR_00357	tmRNA links to Rfam database...	0.37	0.35	0.39	32	82946	70	10	40	20	60
TMR_00358	tmRNA links to Rfam database...	0.68	0.69	0.67	68	74976	55	15	19	21	31
TMR_00361	-	0.35	0.40	0.30	29	93432	80	24	43	13	43
TMR_00366	tmRNA links to Rfam database...	0.52	0.50	0.53	50	67802	55	12	32	11	50
TMR_00372	tmRNA links to Rfam database...	0.59	0.59	0.59	57	70404	52	7	32	13	39
TMR_00374	tmRNA links to Rfam database...	0.35	0.36	0.35	33	81715	80	11	51	18	59
TMR_00375	tmRNA links to Rfam database...	0.51	0.53	0.49	52	73429	63	14	41	8	46
TMR_00376	tmRNA links to Rfam database...	0.51	0.49	0.52	47	74601	60	9	34	17	48
TMR_00378	tmRNA links to Rfam database...	0.24	0.25	0.24	24	67797	86	17	58	11	73
TMR_00383	tmRNA links to Rfam database...	0.44	0.40	0.49	40	66714	50	11	30	9	60
TMR_00384	tmRNA links to Rfam database...	0.20	0.19	0.22	20	65614	74	4	65	5	88
TMR_00393	tmRNA links to Rfam database...	0.58	0.62	0.54	33	53240	62	9	19	34	20
TMR_00395	tmRNA links to Rfam database...	0.75	0.72	0.78	78	64520	30	5	17	8	31
TMR_00398	tmRNA links to Rfam database...	0.72	0.70	0.75	74	65242	34	8	17	9	32
TMR_00399	tmRNA links to Rfam database...	0.44	0.43	0.47	40	64894	52	16	30	6	54
TMR_00404	tmRNA links to Rfam database...	0.56	0.58	0.55	53	67431	62	11	33	18	39
TMR_00408	tmRNA links to Rfam database...	0.58	0.61	0.55	54	65968	57	14	30	13	34
TMR_00409	tmRNA links to Rfam database...	0.64	0.76	0.55	35	68571	80	10	19	51	11
TMR_00411	tmRNA links to Rfam database...	0.61	0.60	0.62	52	60991	44	9	23	12	35
TMR_00415	tmRNA links to Rfam database...	0.64	0.62	0.66	63	67066	36	3	29	4	38
TMR_00419	tmRNA links to Rfam database...	0.63	0.61	0.65	68	81706	55	12	24	19	43
TMR_00422	tmRNA links to Rfam database...	0.53	0.58	0.48	53	67786	75	17	40	18	39
TMR_00423	tmRNA links to Rfam database...	0.52	0.56	0.48	41	63817	64	16	29	19	32
TMR_00427	tmRNA links to Rfam database...	0.45	0.42	0.48	41	67443	49	10	34	5	56
TMR_00429	tmRNA links to Rfam database...	0.38	0.38	0.38	41	74583	72	15	52	5	68
TMR_00430	tmRNA links to Rfam database...	0.18	0.18	0.17	20	82505	96	25	71	0	89
TMR_00431	tmRNA links to Rfam database...	0.70	0.69	0.72	38	51950	55	6	9	40	17
TMR_00432	tmRNA links to Rfam database...	0.46	0.45	0.46	47	79698	63	11	44	8	57
TMR_00433	tmRNA links to Rfam database...	0.59	0.59	0.58	63	80092	51	11	34	6	43
TMR_00439	tmRNA links to Rfam database...	0.45	0.47	0.43	47	68525	75	15	48	12	54
TMR_00441	tmRNA links to Rfam database...	0.14	0.16	0.13	13	62031	95	20	64	11	70
TMR_00443	tmRNA links to Rfam database...	0.57	0.51	0.65	53	67079	36	6	23	7	51
TMR_00448	tmRNA links to Rfam database...	0.47	0.45	0.49	41	62045	50	7	35	8	51
TMR_00451	tmRNA links to Rfam database...	0.19	0.19	0.18	17	63453	80	18	58	4	72
TMR_00457	tmRNA links to Rfam database...	0.22	0.24	0.21	24	78491	96	11	80	5	78
TMR_00458	tmRNA links to Rfam database...	0.32	0.30	0.35	28	63465	60	11	42	7	65
TMR_00460	tmRNA links to Rfam database...	0.65	0.64	0.67	68	79299	42	6	28	8	38
TMR_00465	tmRNA links to Rfam database...	0.27	0.28	0.26	26	64160	79	23	52	4	68
TMR_00469	tmRNA links to Rfam database...	0.53	0.53	0.53	53	64520	51	13	34	4	47
TMR_00472	tmRNA links to Rfam database...	0.64	0.64	0.64	62	64523	43	12	23	8	35
TMR_00478	tmRNA links to Rfam database...	0.24	0.26	0.22	26	71894	94	21	69	4	73
TMR_00498	tmRNA links to Rfam database...	0.46	0.45	0.46	45	68909	60	20	32	8	54
TMR_00499	tmRNA links to Rfam database...	0.27	0.28	0.25	28	64510	88	10	72	6	71
TMR_00501	tmRNA links to Rfam database...	0.45	0.46	0.45	42	62387	61	9	43	9	50
TMR_00502	tmRNA links to Rfam database...	0.37	0.39	0.35	36	75364	77	19	47	11	57
TMR_00503	tmRNA links to Rfam database...	0.70	0.68	0.73	75	67793	38	6	22	10	36
TMR_00519	tmRNA links to Rfam database...	0.33	0.32	0.35	30	63105	69	8	47	14	65
TMR_00520	tmRNA links to Rfam database...	0.44	0.41	0.48	41	63104	56	9	36	11	58
TMR_00522	tmRNA links to Rfam database...	0.36	0.35	0.38	34	63100	65	12	44	9	63
TMR_00528	tmRNA links to Rfam database...	0.36	0.36	0.35	35	63091	75	20	44	11	62
TMR_00540	tmRNA links to Rfam database...	0.35	0.35	0.36	36	73436	76	10	54	12	68
TMR_00541	tmRNA links to Rfam database...	0.56	0.55	0.57	58	61674	54	6	38	10	47
TMR_00544	tmRNA links to Rfam database...	0.36	0.36	0.36	39	89567	82	13	57	12	69
TMR_00547	tmRNA links to Rfam database...	0.68	0.66	0.70	66	65247	33	0	28	5	34
TMR_00553	tmRNA links to Rfam database...	0.45	0.44	0.45	36	48125	50	9	35	6	45
TMR_00559	tmRNA links to Rfam database...	0.52	0.50	0.53	51	62385	53	7	38	8	50
TMR_00560	tmRNA links to Rfam database...	0.61	0.54	0.68	53	60997	30	2	23	5	45
TMR_00562	tmRNA links to Rfam database...	0.16	0.18	0.15	18	72652	102	19	82	1	84
TMR_00563	tmRNA links to Rfam database...	0.62	0.65	0.59	67	75352	55	19	28	8	36
TMR_00566	tmRNA links to Rfam database...	0.58	0.54	0.62	54	60639	38	6	27	5	46
TMR_00568	tmRNA links to Rfam database...	0.51	0.51	0.53	50	60631	51	6	39	6	49
TMR_00570	tmRNA links to Rfam database...	0.69	0.64	0.75	62	60295	30	2	19	9	35
TMR_00571	tmRNA links to Rfam database...	0.65	0.64	0.66	63	60631	44	7	25	12	36
TMR_00576	tmRNA links to Rfam database...	0.65	0.65	0.65	66	60277	44	8	27	9	36
TMR_00579	tmRNA links to Rfam database...	0.21	0.23	0.19	21	80490	99	23	67	9	69
TMR_00580	tmRNA links to Rfam database...	0.41	0.41	0.41	41	60625	63	15	45	3	59
TMR_00581	tmRNA links to Rfam database...	0.45	0.42	0.48	41	62396	49	9	35	5	57
TMR_00584	tmRNA links to Rfam database...	0.63	0.61	0.65	59	60984	45	3	29	13	38
TMR_00586	tmRNA links to Rfam database...	0.41	0.41	0.41	40	60977	63	11	47	5	57
TMR_00587	tmRNA links to Rfam database...	0.58	0.57	0.59	57	61329	48	6	33	9	43
TMR_00588	tmRNA links to Rfam database...	0.39	0.40	0.38	40	77315	71	23	43	5	61
TMR_00594	tmRNA links to Rfam database...	0.36	0.36	0.37	37	79300	70	12	52	6	67
TMR_00596	tmRNA links to Rfam database...	0.34	0.34	0.34	32	78115	78	16	47	15	63
TMR_00599	tmRNA links to Rfam database...	0.25	0.28	0.23	20	63102	75	25	43	7	52
TMR_00600	tmRNA links to Rfam database...	0.50	0.50	0.51	57	79688	61	10	45	6	58
TMR_00601	tmRNA links to Rfam database...	0.32	0.31	0.34	13	58958	72	5	20	47	29
TMR_00603	tmRNA links to Rfam database...	0.67	0.70	0.64	30	60331	69	6	11	52	13
TMR_00604	tmRNA links to Rfam database...	0.65	0.64	0.67	72	62727	41	3	33	5	40
TMR_00605	tmRNA links to Rfam database...	0.52	0.53	0.52	57	74195	60	16	37	7	51
TMR_00606	tmRNA links to Rfam database...	0.39	0.40	0.37	43	68891	79	8	64	7	64
TMR_00609	tmRNA links to Rfam database...	0.69	0.68	0.70	77	63436	41	8	25	8	36
TMR_00610	tmRNA links to Rfam database...	0.70	0.70	0.70	73	62023	47	9	23	15	31
TMR_00611	tmRNA links to Rfam database...	0.61	0.65	0.58	66	61311	48	13	35	0	36
TMR_00612	tmRNA links to Rfam database...	0.45	0.46	0.44	48	60616	67	8	54	5	56
TMR_00614	tmRNA links to Rfam database...	0.72	0.69	0.76	72	60980	34	3	20	11	32
TMR_00615	tmRNA links to Rfam database...	0.67	0.69	0.65	66	63802	46	14	21	11	30
TMR_00616	tmRNA links to Rfam database...	0.42	0.41	0.42	41	67063	65	12	45	8	58
TMR_00617	tmRNA links to Rfam database...	0.29	0.34	0.25	20	34635	70	17	44	9	38
TMR_00623	tmRNA links to Rfam database...	0.52	0.51	0.54	55	61323	53	2	45	6	53
TMR_00624	tmRNA links to Rfam database...	0.80	0.75	0.84	81	62385	30	4	11	15	27
TMR_00625	tmRNA links to Rfam database...	0.29	0.30	0.28	32	78887	87	22	62	3	74
TMR_00626	tmRNA links to Rfam database...	0.52	0.50	0.54	55	67794	52	8	39	5	54
TMR_00680	tmRNA links to Rfam database...	0.25	0.26	0.24	26	67789	89	15	66	8	73
TMR_00681	tmRNA links to Rfam database...	0.57	0.57	0.58	55	65971	52	4	36	12	42
TMR_00683	tmRNA links to Rfam database...	0.25	0.26	0.23	26	82917	95	19	66	10	74
TMR_00686	tmRNA links to Rfam database...	0.51	0.46	0.57	50	71165	50	9	29	12	58
TMR_00687	tmRNA links to Rfam database...	0.34	0.36	0.33	40	71510	83	12	69	2	71
TMR_00696	tmRNA links to Rfam database...	0.27	0.25	0.29	29	84977	86	12	60	14	85
TMR_00698	tmRNA links to Rfam database...	0.34	0.35	0.33	36	63081	73	18	55	0	68
TMR_00699	tmRNA links to Rfam database...	0.67	0.62	0.72	63	67074	29	4	20	5	39
TMR_00702	tmRNA links to Rfam database...	0.36	0.32	0.40	32	67081	57	5	43	9	68
TMR_00703	tmRNA links to Rfam database...	0.59	0.56	0.62	55	67439	43	6	28	9	44
TMR_00706	tmRNA links to Rfam database...	0.62	0.58	0.67	60	66340	34	6	24	4	43
TMR_00711	tmRNA links to Rfam database...	0.56	0.58	0.54	57	67791	56	16	32	8	41
TMR_00712	tmRNA links to Rfam database...	0.31	0.32	0.31	35	78493	90	17	61	12	74
TMR_00716	tmRNA links to Rfam database...	0.24	0.24	0.25	24	62738	78	10	63	5	76

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of CentroidFold - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidFold

2. Individual counts for CentroidFold [ download as .csv ]

Performance of Contrafold - scored lower in this pairwise comparison

1. Total counts & total scores for Contrafold

2. Individual counts for Contrafold [ download as .csv ]