CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	ContextFold		MaxExpect
MCC	0.718	>	0.524
Average MCC ± 95% Confidence Intervals	0.712 ± 0.015	>	0.522 ± 0.014
Sensitivity	0.677	>	0.511
Positive Predictive Value	0.763	>	0.538
Total TP	42560	>	32135
Total TN	43343529	>	43339650
Total FP	16963	<	33416
Total FP CONTRA	2830	<	4735
Total FP INCONS	10418	<	22817
Total FP COMP	3715	<	5864
Total FN	20315	<	30740
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of ContextFold and MaxExpect. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for ContextFold and MaxExpect).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for ContextFold and MaxExpect).
Comparison of average Matthews Correlation Coefficients (MCCs) for ContextFold and MaxExpect. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for ContextFold and MaxExpect).

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Performance of ContextFold - scored higher in this pairwise comparison

1. Total counts & total scores for ContextFold

Total Base Pair Counts
Total TP	42560
Total TN	43343529
Total FP	16963
Total FP CONTRA	2830
Total FP INCONS	10418
Total FP COMP	3715
Total FN	20315

Total Scores
MCC	0.718
Average MCC ± 95% Confidence Intervals	0.712 ± 0.015
Sensitivity	0.677
Positive Predictive Value	0.763
Nr of predictions	610

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2. Individual counts for ContextFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.88	0.83	0.94	62	34125	7	0	4	3	13
ASE_00002	RNaseP_arch links to Rfam database...	0.64	0.60	0.69	44	35447	25	4	16	5	29
ASE_00004	RNaseP_bact_a links to Rfam database...	0.88	0.86	0.90	83	47803	9	1	8	0	14
ASE_00005	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.98	99	57869	2	0	2	0	18
ASE_00006	RNaseP_bact_a links to Rfam database...	0.89	0.87	0.90	81	47496	9	1	8	0	12
ASE_00007	RNaseP_bact_a links to Rfam database...	0.91	0.86	0.97	95	59587	3	0	3	0	15
ASE_00009	RNaseP_arch links to Rfam database...	0.84	0.79	0.90	53	26047	6	0	6	0	14
ASE_00012	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.75	78	73816	29	3	23	3	45
ASE_00014	RNaseP_arch links to Rfam database...	0.70	0.65	0.75	69	54193	26	1	22	3	37
ASE_00017	RNaseP_nuc links to Rfam database...	0.13	0.13	0.13	8	50979	71	12	41	18	56
ASE_00018	RNaseP_bact_a links to Rfam database...	0.88	0.84	0.93	112	80480	9	0	9	0	22
ASE_00020	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	89	73810	21	1	20	0	37
ASE_00021	RNaseP_bact_a links to Rfam database...	0.87	0.79	0.95	126	104064	10	0	6	4	34
ASE_00022	RNaseP_bact_b links to Rfam database...	0.89	0.80	1.00	99	82929	5	0	0	5	25
ASE_00023	RNaseP_bact_a links to Rfam database...	0.88	0.84	0.91	107	84138	13	0	10	3	20
ASE_00025	RNaseP_nuc links to Rfam database...	0.10	0.10	0.10	7	78537	101	11	51	39	64
ASE_00026	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	79	59597	13	1	8	4	31
ASE_00028	RNaseP_bact_b links to Rfam database...	0.86	0.76	0.96	96	84566	8	1	3	4	30
ASE_00029	RNaseP_bact_a links to Rfam database...	0.88	0.84	0.93	102	82918	9	2	6	1	20
ASE_00030	RNaseP_bact_a links to Rfam database...	0.88	0.81	0.95	117	85368	6	2	4	0	28
ASE_00031	RNaseP_bact_a links to Rfam database...	0.95	0.90	1.00	114	86622	5	0	0	5	12
ASE_00032	RNaseP_bact_a links to Rfam database...	0.93	0.87	1.00	103	80097	3	0	0	3	15
ASE_00033	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.88	81	64888	11	0	11	0	40
ASE_00035	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.86	77	70410	15	1	12	2	41
ASE_00036	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.92	98	75749	9	1	7	1	34
ASE_00037	RNaseP_bact_a links to Rfam database...	0.88	0.80	0.98	88	59250	2	0	2	0	22
ASE_00038	RNaseP_bact_a links to Rfam database...	0.94	0.89	1.00	90	53538	0	0	0	0	11
ASE_00040	RNaseP_bact_a links to Rfam database...	0.88	0.81	0.96	108	78891	7	0	4	3	25
ASE_00041	RNaseP_bact_a links to Rfam database...	0.88	0.81	0.97	87	57540	5	0	3	2	21
ASE_00042	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.91	108	89981	14	1	10	3	37
ASE_00044	RNaseP_bact_a links to Rfam database...	0.92	0.87	0.97	91	54521	6	0	3	3	14
ASE_00046	RNaseP_bact_a links to Rfam database...	0.81	0.69	0.96	71	50329	3	0	3	0	32
ASE_00047	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.84	93	74194	18	0	18	0	37
ASE_00052	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	68	61343	15	0	14	1	44
ASE_00053	RNaseP_bact_a links to Rfam database...	0.88	0.82	0.94	109	79285	7	4	3	0	24
ASE_00056	-	0.92	0.85	1.00	61	30815	9	0	0	9	11
ASE_00057	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.85	100	82097	20	5	13	2	34
ASE_00064	RNaseP_bact_a links to Rfam database...	0.95	0.91	1.00	81	45370	1	0	0	1	8
ASE_00066	RNaseP_bact_a links to Rfam database...	0.87	0.79	0.95	103	72282	5	0	5	0	27
ASE_00068	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	64	37604	7	0	7	0	21
ASE_00069	RNaseP_bact_a links to Rfam database...	0.91	0.84	0.99	117	82910	2	0	1	1	23
ASE_00074	RNaseP_bact_a links to Rfam database...	0.95	0.90	1.00	107	67789	0	0	0	0	12
ASE_00075	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.94	120	108683	12	1	7	4	42
ASE_00076	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.89	92	68162	11	0	11	0	26
ASE_00077	RNaseP_bact_a links to Rfam database...	0.88	0.84	0.94	72	45073	5	1	4	0	14
ASE_00078	RNaseP_bact_a links to Rfam database...	0.88	0.88	0.89	73	42989	10	3	6	1	10
ASE_00079	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	68	55522	21	2	19	0	32
ASE_00080	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.84	91	71523	21	0	17	4	32
ASE_00081	RNaseP_bact_a links to Rfam database...	0.92	0.86	1.00	83	49687	0	0	0	0	14
ASE_00082	RNaseP_bact_a links to Rfam database...	0.93	0.86	1.00	100	70400	8	0	0	8	16
ASE_00083	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.83	85	62379	20	0	17	3	25
ASE_00084	RNaseP_bact_a links to Rfam database...	0.93	0.89	0.97	88	53537	3	1	2	0	11
ASE_00087	RNaseP_bact_a links to Rfam database...	0.89	0.81	0.98	116	88292	2	0	2	0	28
ASE_00089	-	0.80	0.73	0.87	58	31308	9	1	8	0	21
ASE_00090	RNaseP_bact_a links to Rfam database...	0.84	0.83	0.86	84	55513	14	1	13	0	17
ASE_00092	RNaseP_bact_a links to Rfam database...	0.94	0.91	0.97	103	63440	3	1	2	0	10
ASE_00096	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.85	85	63446	15	0	15	0	30
ASE_00099	RNaseP_bact_a links to Rfam database...	0.92	0.85	1.00	102	64518	0	0	0	0	18
ASE_00100	RNaseP_nuc links to Rfam database...	0.25	0.25	0.25	19	82140	97	12	44	41	57
ASE_00102	RNaseP_bact_a links to Rfam database...	0.87	0.79	0.95	131	117717	9	1	6	2	35
ASE_00104	RNaseP_bact_a links to Rfam database...	0.92	0.85	1.00	101	64160	0	0	0	0	18
ASE_00105	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.84	72	64175	14	0	14	0	39
ASE_00107	RNaseP_bact_a links to Rfam database...	0.93	0.87	1.00	111	73042	0	0	0	0	16
ASE_00108	RNaseP_nuc links to Rfam database...	0.23	0.27	0.20	17	46887	76	24	43	9	46
ASE_00111	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	50004	92	24	58	10	57
ASE_00112	RNaseP_bact_a links to Rfam database...	0.95	0.90	1.00	104	75362	3	0	0	3	12
ASE_00115	RNaseP_bact_a links to Rfam database...	0.96	0.93	0.99	94	54520	5	0	1	4	7
ASE_00116	RNaseP_arch links to Rfam database...	0.90	0.85	0.97	56	31568	2	0	2	0	10
ASE_00118	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.85	78	60634	15	1	13	1	24
ASE_00119	RNaseP_bact_a links to Rfam database...	0.89	0.87	0.90	94	62731	10	1	9	0	14
ASE_00120	RNaseP_arch links to Rfam database...	0.82	0.73	0.92	69	46896	7	2	4	1	25
ASE_00121	RNaseP_arch links to Rfam database...	0.85	0.77	0.95	71	45075	5	2	2	1	21
ASE_00122	RNaseP_bact_a links to Rfam database...	0.92	0.86	0.97	76	43287	2	0	2	0	12
ASE_00123	RNaseP_bact_a links to Rfam database...	0.88	0.81	0.96	69	38431	3	0	3	0	16
ASE_00125	RNaseP_bact_a links to Rfam database...	0.92	0.86	0.99	76	39263	1	0	1	0	12
ASE_00126	RNaseP_bact_a links to Rfam database...	0.94	0.89	0.99	73	40396	1	0	1	0	9
ASE_00128	RNaseP_bact_a links to Rfam database...	0.93	0.86	1.00	86	53215	0	0	0	0	14
ASE_00129	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.77	76	62736	23	1	22	0	35
ASE_00131	RNaseP_bact_a links to Rfam database...	0.90	0.82	0.99	70	39269	1	0	1	0	15
ASE_00132	RNaseP_bact_a links to Rfam database...	0.90	0.82	0.99	78	50324	2	0	1	1	17
ASE_00134	RNaseP_bact_a links to Rfam database...	0.92	0.89	0.96	85	50314	4	0	4	0	10
ASE_00135	RNaseP_bact_a links to Rfam database...	0.95	0.91	0.99	99	63090	6	0	1	5	10
ASE_00136	RNaseP_bact_a links to Rfam database...	0.95	0.91	0.99	84	48120	1	0	1	0	8
ASE_00137	RNaseP_bact_a links to Rfam database...	0.91	0.88	0.95	86	48425	5	1	4	0	12
ASE_00138	RNaseP_bact_a links to Rfam database...	0.93	0.89	0.97	72	40396	2	0	2	0	9
ASE_00139	RNaseP_bact_a links to Rfam database...	0.94	0.88	1.00	91	54194	1	0	0	1	13
ASE_00140	RNaseP_bact_a links to Rfam database...	0.91	0.84	0.98	105	70769	2	2	0	0	20
ASE_00142	RNaseP_bact_a links to Rfam database...	0.90	0.83	0.97	101	67057	5	0	3	2	21
ASE_00145	RNaseP_arch links to Rfam database...	0.80	0.78	0.81	87	70018	25	4	16	5	24
ASE_00146	RNaseP_bact_a links to Rfam database...	0.84	0.75	0.94	93	70777	7	1	5	1	31
ASE_00148	RNaseP_arch links to Rfam database...	0.85	0.80	0.90	123	112438	17	2	12	3	31
ASE_00151	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.90	80	51914	9	6	3	0	18
ASE_00153	RNaseP_nuc links to Rfam database...	0.51	0.51	0.51	37	57558	68	6	29	33	36
ASE_00154	RNaseP_arch links to Rfam database...	0.69	0.66	0.72	71	65243	31	3	24	4	36
ASE_00155	RNaseP_arch links to Rfam database...	0.87	0.80	0.94	114	93407	12	0	7	5	28
ASE_00163	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.87	78	53211	16	3	9	4	15
ASE_00165	RNaseP_bact_a links to Rfam database...	0.84	0.80	0.89	81	52884	11	3	7	1	20
ASE_00168	RNaseP_nuc links to Rfam database...	0.26	0.30	0.23	19	60645	73	16	46	11	45
ASE_00169	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.91	85	57198	11	0	8	3	22
ASE_00170	RNaseP_bact_a links to Rfam database...	0.91	0.87	0.95	81	48743	6	0	4	2	12
ASE_00171	RNaseP_bact_a links to Rfam database...	0.86	0.79	0.95	74	48438	4	0	4	0	20
ASE_00172	RNaseP_bact_a links to Rfam database...	0.86	0.83	0.90	88	58898	11	2	8	1	18
ASE_00174	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.97	93	60979	4	0	3	1	16
ASE_00175	RNaseP_bact_a links to Rfam database...	0.94	0.90	0.98	96	59933	3	0	2	1	11
ASE_00176	RNaseP_bact_a links to Rfam database...	0.64	0.56	0.73	62	59946	23	5	18	0	48
ASE_00179	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	64	44181	8	4	4	0	20
ASE_00180	RNaseP_bact_a links to Rfam database...	0.93	0.87	1.00	87	51273	0	0	0	0	13
ASE_00181	RNaseP_bact_a links to Rfam database...	0.93	0.90	0.96	95	57531	4	0	4	0	11
ASE_00182	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.97	116	84135	4	0	4	0	20
ASE_00183	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.85	91	61318	17	0	16	1	22
ASE_00184	RNaseP_bact_a links to Rfam database...	0.96	0.93	0.99	95	54519	2	0	1	1	7
ASE_00185	RNaseP_bact_a links to Rfam database...	0.92	0.87	0.98	111	73423	2	0	2	0	17
ASE_00186	RNaseP_bact_a links to Rfam database...	0.89	0.86	0.93	113	78882	12	1	7	4	19
ASE_00187	RNaseP_arch links to Rfam database...	0.78	0.71	0.85	82	68539	16	2	12	2	33
ASE_00189	RNaseP_bact_b links to Rfam database...	0.91	0.87	0.96	89	63097	6	0	4	2	13
ASE_00190	RNaseP_bact_b links to Rfam database...	0.86	0.81	0.91	73	45371	8	0	7	1	17
ASE_00192	RNaseP_bact_b links to Rfam database...	0.73	0.62	0.86	82	84571	19	1	12	6	51
ASE_00194	RNaseP_bact_b links to Rfam database...	0.79	0.71	0.88	84	73440	17	2	10	5	35
ASE_00195	-	0.68	0.60	0.76	80	86215	28	5	20	3	53
ASE_00196	RNaseP_arch links to Rfam database...	0.78	0.75	0.82	56	31558	14	2	10	2	19
ASE_00197	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.82	106	89123	27	0	24	3	39
ASE_00198	RNaseP_bact_a links to Rfam database...	0.95	0.90	1.00	92	52558	0	0	0	0	10
ASE_00203	RNaseP_bact_a links to Rfam database...	0.94	0.90	0.99	86	46578	1	1	0	0	10
ASE_00204	RNaseP_bact_b links to Rfam database...	0.84	0.72	0.98	81	67813	8	0	2	6	31
ASE_00205	RNaseP_arch links to Rfam database...	0.64	0.61	0.68	55	45975	32	1	25	6	35
ASE_00209	RNaseP_arch links to Rfam database...	0.59	0.55	0.63	48	42995	28	1	27	0	40
ASE_00210	RNaseP_arch links to Rfam database...	0.70	0.69	0.71	45	27198	20	3	15	2	20
ASE_00212	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.90	122	93826	16	1	12	3	26
ASE_00213	RNaseP_arch links to Rfam database...	0.87	0.82	0.93	54	27203	6	0	4	2	12
ASE_00214	RNaseP_bact_a links to Rfam database...	0.95	0.91	0.99	94	56185	6	0	1	5	9
ASE_00215	RNaseP_bact_a links to Rfam database...	0.92	0.85	1.00	84	48432	1	0	0	1	15
ASE_00216	RNaseP_bact_a links to Rfam database...	0.91	0.88	0.94	72	39263	5	3	2	0	10
ASE_00217	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.93	67	40398	10	0	5	5	23
ASE_00221	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.84	80	64525	15	1	14	0	37
ASE_00222	RNaseP_arch links to Rfam database...	0.75	0.69	0.82	108	111969	27	2	22	3	49
ASE_00227	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.71	72	78902	29	2	27	0	61
ASE_00228	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.87	71	46889	12	3	8	1	15
ASE_00229	RNaseP_bact_a links to Rfam database...	0.91	0.87	0.94	76	42405	5	1	4	0	11
ASE_00231	RNaseP_bact_a links to Rfam database...	0.94	0.92	0.97	88	47804	3	1	2	0	8
ASE_00232	RNaseP_bact_a links to Rfam database...	0.96	0.93	1.00	78	38425	0	0	0	0	6
ASE_00234	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	94	75353	19	1	18	0	35
ASE_00237	RNaseP_nuc links to Rfam database...	0.08	0.09	0.07	5	45683	76	18	47	11	51
ASE_00238	RNaseP_bact_a links to Rfam database...	0.94	0.90	0.98	103	64156	2	1	1	0	11
ASE_00240	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.81	68	46581	18	0	16	2	25
ASE_00241	RNaseP_bact_a links to Rfam database...	0.96	0.93	0.99	81	43874	1	0	1	0	6
ASE_00242	RNaseP_bact_a links to Rfam database...	0.92	0.89	0.95	100	60970	5	3	2	0	12
ASE_00246	RNaseP_nuc links to Rfam database...	0.14	0.15	0.13	10	48129	75	18	48	9	57
ASE_00247	RNaseP_nuc links to Rfam database...	0.06	0.06	0.07	4	54226	84	7	48	29	60
ASE_00248	RNaseP_bact_a links to Rfam database...	0.93	0.87	0.99	99	62381	1	0	1	0	15
ASE_00250	RNaseP_bact_a links to Rfam database...	0.88	0.80	0.96	105	78894	7	0	4	3	26
ASE_00252	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	115	115309	20	0	16	4	53
ASE_00254	RNaseP_bact_a links to Rfam database...	0.90	0.85	0.95	70	36782	4	0	4	0	12
ASE_00255	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.89	97	74582	12	1	11	0	33
ASE_00257	RNaseP_bact_a links to Rfam database...	0.96	0.93	1.00	90	50950	0	0	0	0	7
ASE_00259	RNaseP_bact_a links to Rfam database...	0.63	0.54	0.75	65	73066	22	2	20	0	56
ASE_00263	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	102	70389	9	0	9	0	18
ASE_00264	RNaseP_nuc links to Rfam database...	0.87	0.82	0.93	82	49053	12	0	6	6	18
ASE_00267	RNaseP_bact_a links to Rfam database...	0.96	0.92	1.00	81	45069	2	0	0	2	7
ASE_00270	RNaseP_bact_a links to Rfam database...	0.91	0.86	0.96	110	72275	5	1	4	0	18
ASE_00274	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.96	86	55521	4	1	3	0	17
ASE_00277	RNaseP_bact_a links to Rfam database...	0.81	0.78	0.85	71	48121	13	1	12	0	20
ASE_00279	RNaseP_bact_a links to Rfam database...	0.92	0.86	0.98	87	53212	2	0	2	0	14
ASE_00280	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.90	80	51914	9	0	9	0	18
ASE_00281	RNaseP_bact_a links to Rfam database...	0.95	0.91	1.00	80	44471	0	0	0	0	8
ASE_00282	RNaseP_bact_a links to Rfam database...	0.88	0.83	0.95	105	77704	10	0	6	4	22
ASE_00283	RNaseP_bact_a links to Rfam database...	0.90	0.86	0.95	92	61679	5	0	5	0	15
ASE_00284	RNaseP_bact_a links to Rfam database...	0.95	0.91	1.00	98	58213	0	0	0	0	10
ASE_00285	RNaseP_bact_a links to Rfam database...	0.86	0.80	0.92	97	68901	8	0	8	0	25
ASE_00286	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	78	46580	10	0	7	3	14
ASE_00287	RNaseP_bact_a links to Rfam database...	0.93	0.86	1.00	89	54857	0	0	0	0	14
ASE_00288	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.90	63	45986	7	2	5	0	30
ASE_00289	RNaseP_bact_a links to Rfam database...	0.89	0.81	0.98	127	100895	5	1	2	2	30
ASE_00291	-	0.81	0.71	0.92	67	48443	8	0	6	2	27
ASE_00292	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	91	81690	29	0	29	0	47
ASE_00294	RNaseP_bact_a links to Rfam database...	0.90	0.83	0.97	142	114334	8	0	5	3	29
ASE_00295	RNaseP_bact_a links to Rfam database...	0.85	0.76	0.96	99	73817	4	0	4	0	32
ASE_00296	RNaseP_bact_a links to Rfam database...	0.84	0.79	0.90	115	91678	13	1	12	0	30
ASE_00297	RNaseP_bact_a links to Rfam database...	0.87	0.84	0.90	82	52884	10	1	8	1	16
ASE_00298	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	77	67427	24	2	22	0	36
ASE_00299	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.82	71	49368	20	0	16	4	29
ASE_00313	RNaseP_nuc links to Rfam database...	0.62	0.60	0.65	53	62399	41	10	19	12	36
ASE_00316	RNaseP_nuc links to Rfam database...	0.89	0.80	0.99	78	107801	35	1	0	34	20
ASE_00318	RNaseP_bact_b links to Rfam database...	0.76	0.68	0.86	80	80107	19	0	13	6	38
ASE_00327	RNaseP_nuc links to Rfam database...	0.87	0.80	0.96	71	57217	21	2	1	18	18
ASE_00328	RNaseP_bact_b links to Rfam database...	0.91	0.86	0.97	96	72672	9	0	3	6	16
ASE_00330	RNaseP_nuc links to Rfam database...	0.83	0.79	0.88	71	56199	23	0	10	13	19
ASE_00332	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.69	85	81687	39	2	36	1	53
ASE_00335	RNaseP_bact_b links to Rfam database...	0.82	0.74	0.91	86	75372	13	0	8	5	30
ASE_00337	RNaseP_nuc links to Rfam database...	0.59	0.56	0.63	40	39276	35	5	19	11	31
ASE_00338	RNaseP_nuc links to Rfam database...	0.76	0.71	0.81	70	66344	31	2	14	15	28
ASE_00339	RNaseP_bact_a links to Rfam database...	0.95	0.91	1.00	108	80092	7	0	0	7	11
ASE_00340	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.82	64	45978	17	2	12	3	21
ASE_00342	RNaseP_bact_a links to Rfam database...	0.91	0.86	0.96	99	62378	4	0	4	0	16
ASE_00343	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.95	94	83337	12	0	5	7	19
ASE_00346	RNaseP_arch links to Rfam database...	0.61	0.58	0.64	56	48118	32	2	29	1	41
ASE_00353	RNaseP_bact_a links to Rfam database...	0.95	0.92	0.99	98	57871	1	1	0	0	9
ASE_00359	RNaseP_arch links to Rfam database...	0.73	0.69	0.79	55	42708	17	2	13	2	25
ASE_00360	RNaseP_arch links to Rfam database...	0.73	0.65	0.82	42	29352	9	0	9	0	23
ASE_00361	RNaseP_bact_a links to Rfam database...	0.94	0.88	1.00	112	75354	2	0	0	2	15
ASE_00362	RNaseP_bact_a links to Rfam database...	0.88	0.86	0.90	78	48118	9	2	7	0	13
ASE_00363	RNaseP_bact_a links to Rfam database...	0.95	0.91	0.98	86	51272	3	0	2	1	8
ASE_00364	RNaseP_bact_a links to Rfam database...	0.90	0.86	0.95	90	54190	5	0	5	0	15
ASE_00366	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.81	75	58560	18	3	15	0	23
ASE_00367	RNaseP_bact_a links to Rfam database...	0.90	0.84	0.96	72	42996	7	0	3	4	14
ASE_00369	RNaseP_bact_a links to Rfam database...	0.96	0.93	1.00	99	55846	1	0	0	1	8
ASE_00370	RNaseP_bact_a links to Rfam database...	0.94	0.90	0.99	76	41828	1	0	1	0	8
ASE_00372	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	81	51911	12	1	10	1	19
ASE_00374	RNaseP_bact_a links to Rfam database...	0.88	0.88	0.90	77	44764	9	2	7	0	11
ASE_00375	RNaseP_bact_a links to Rfam database...	0.94	0.88	1.00	97	60281	0	0	0	0	13
ASE_00376	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	89	56856	8	0	8	0	16
ASE_00377	RNaseP_bact_a links to Rfam database...	0.95	0.93	0.98	99	57529	2	0	2	0	8
ASE_00379	RNaseP_bact_a links to Rfam database...	0.90	0.87	0.94	77	45974	7	0	5	2	12
ASE_00380	RNaseP_bact_a links to Rfam database...	0.92	0.84	1.00	83	54863	0	0	0	0	16
ASE_00382	RNaseP_bact_a links to Rfam database...	0.96	0.93	0.99	78	41826	1	0	1	0	6
ASE_00383	RNaseP_bact_a links to Rfam database...	0.93	0.87	1.00	91	54524	0	0	0	0	14
ASE_00384	RNaseP_bact_a links to Rfam database...	0.95	0.90	1.00	83	48433	0	0	0	0	9
ASE_00385	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.82	61	41831	13	7	6	0	20
ASE_00386	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.90	78	50316	10	5	4	1	18
ASE_00387	RNaseP_bact_a links to Rfam database...	0.89	0.86	0.93	89	55849	7	0	7	0	15
ASE_00388	RNaseP_bact_a links to Rfam database...	0.94	0.89	1.00	79	45674	0	0	0	0	10
ASE_00390	RNaseP_bact_a links to Rfam database...	0.93	0.89	0.97	76	42117	8	0	2	6	9
ASE_00393	RNaseP_bact_a links to Rfam database...	0.89	0.84	0.94	78	47812	5	0	5	0	15
ASE_00394	RNaseP_bact_a links to Rfam database...	0.96	0.91	1.00	85	46886	0	0	0	0	8
ASE_00395	RNaseP_bact_a links to Rfam database...	0.98	0.95	1.00	80	41536	2	0	0	2	4
ASE_00396	RNaseP_bact_a links to Rfam database...	0.91	0.88	0.95	73	41539	4	0	4	0	10
ASE_00397	RNaseP_bact_a links to Rfam database...	0.94	0.89	0.99	93	54521	1	1	0	0	12
ASE_00398	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.80	68	55860	17	0	17	0	36
ASE_00400	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.91	84	57878	8	0	8	0	22
ASE_00401	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.90	102	76915	11	0	11	0	24
ASE_00402	RNaseP_bact_a links to Rfam database...	0.90	0.87	0.94	74	42407	5	0	5	0	11
ASE_00403	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.90	85	55851	9	0	9	0	22
ASE_00404	RNaseP_bact_a links to Rfam database...	0.90	0.86	0.95	73	42994	7	0	4	3	12
ASE_00406	RNaseP_bact_a links to Rfam database...	0.97	0.94	1.00	88	48740	2	0	0	2	6
ASE_00408	-	0.95	0.93	0.97	66	32317	6	2	0	4	5
ASE_00409	-	0.79	0.76	0.83	63	40965	13	2	11	0	20
ASE_00411	RNaseP_bact_a links to Rfam database...	0.82	0.81	0.83	72	49368	15	5	10	0	17
ASE_00412	RNaseP_bact_a links to Rfam database...	0.87	0.81	0.94	85	58221	5	0	5	0	20
ASE_00413	RNaseP_bact_a links to Rfam database...	0.90	0.90	0.90	73	44470	11	5	3	3	8
ASE_00414	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.88	68	46283	15	0	9	6	27
ASE_00415	RNaseP_bact_a links to Rfam database...	0.89	0.85	0.93	88	54851	7	0	7	0	15
ASE_00416	RNaseP_bact_a links to Rfam database...	0.92	0.88	0.96	112	77304	8	1	4	3	15
ASE_00417	RNaseP_arch links to Rfam database...	0.83	0.76	0.90	76	54531	11	0	8	3	24
ASE_00418	RNaseP_arch links to Rfam database...	0.84	0.77	0.91	58	38717	9	0	6	3	17
ASE_00419	RNaseP_bact_a links to Rfam database...	0.96	0.93	0.98	96	54848	3	1	1	1	7
ASE_00422	RNaseP_bact_a links to Rfam database...	0.92	0.88	0.97	83	46885	9	0	3	6	11
ASE_00423	RNaseP_bact_a links to Rfam database...	0.92	0.87	0.97	95	56855	4	2	1	1	14
ASE_00426	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.84	77	60983	15	1	14	0	31
ASE_00428	RNaseP_bact_a links to Rfam database...	0.87	0.82	0.92	102	76525	10	1	8	1	23
ASE_00429	-	0.94	0.88	1.00	58	28145	3	0	0	3	8
ASE_00430	RNaseP_bact_a links to Rfam database...	0.95	0.91	1.00	88	46883	3	0	0	3	9
ASE_00431	RNaseP_bact_a links to Rfam database...	0.85	0.75	0.97	71	46287	9	0	2	7	24
ASE_00434	RNaseP_bact_b links to Rfam database...	0.79	0.75	0.84	82	68167	26	3	13	10	28
ASE_00437	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.83	91	79292	18	0	18	0	44
ASE_00438	RNaseP_bact_a links to Rfam database...	0.87	0.84	0.91	97	65959	10	0	10	0	19
ASE_00441	RNaseP_bact_a links to Rfam database...	0.93	0.87	0.99	97	64163	4	0	1	3	15
ASE_00447	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	79	60288	11	0	11	0	37
ASE_00448	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.97	95	64163	8	0	3	5	17
ASE_00451	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.97	106	70767	3	1	2	0	19
CRW_00004	-	0.77	0.79	0.76	103	154155	50	15	17	18	28
CRW_00005	-	0.85	0.83	0.86	110	137947	38	4	14	20	22
CRW_00007	-	0.39	0.41	0.38	54	144849	88	25	63	0	79
CRW_00009	-	0.64	0.64	0.63	89	137933	67	8	45	14	49
CRW_00010	-	0.79	0.78	0.80	98	102708	30	8	17	5	28
CRW_00011	-	0.93	0.91	0.96	125	118211	18	0	5	13	13
CRW_00012	-	0.30	0.30	0.29	43	147005	107	19	86	2	98
CRW_00013	Intron_gpI links to Rfam database...	0.67	0.60	0.76	69	103649	34	4	18	12	46
CRW_00014	-	0.73	0.72	0.74	88	103621	38	7	24	7	35
CRW_00016	Intron_gpI links to Rfam database...	0.81	0.73	0.92	87	77326	14	3	5	6	33
CRW_00017	-	0.63	0.65	0.61	59	92138	55	4	34	17	32
CRW_00018	-	0.45	0.49	0.42	59	182571	94	40	40	14	62
CRW_00019	-	0.87	0.84	0.91	115	127638	26	4	8	14	22
CRW_00423	-	0.15	0.14	0.17	27	242395	135	21	113	1	162
CRW_00429	-	0.47	0.42	0.52	97	306751	94	12	76	6	136
CRW_00605	-	0.69	0.64	0.74	45	183860	94	0	16	78	25
CRW_00608	-	0.72	0.67	0.78	53	35710	20	0	15	5	26
CRW_00610	Intron_gpI links to Rfam database...	0.87	0.80	0.94	65	36246	7	1	3	3	16
CRW_00611	-	0.80	0.73	0.87	55	31312	10	1	7	2	20
CRW_00612	-	0.71	0.63	0.79	59	270405	125	0	16	109	34
CRW_00613	Intron_gpI links to Rfam database...	0.47	0.42	0.53	33	34918	36	3	26	7	45
CRW_00614	Intron_gpI links to Rfam database...	0.14	0.14	0.14	8	121715	98	13	35	50	49
CRW_00618	Intron_gpI links to Rfam database...	0.21	0.21	0.21	13	56218	64	9	40	15	48
CRW_00619	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	164974	131	8	43	80	73
CRW_00620	Intron_gpI links to Rfam database...	0.31	0.32	0.31	20	150910	112	14	31	67	43
CRW_00621	Intron_gpI links to Rfam database...	0.44	0.41	0.48	29	153121	120	6	25	89	42
CRW_00623	Intron_gpI links to Rfam database...	0.35	0.30	0.41	25	129734	101	6	30	65	58
CRW_00626	-	0.70	0.68	0.71	71	100925	48	9	20	19	33
CRW_00629	-	0.72	0.70	0.74	86	91261	32	9	22	1	36
CRW_00632	-	0.92	0.88	0.97	113	82911	6	0	4	2	15
CRW_00633	Intron_gpI links to Rfam database...	0.81	0.75	0.86	80	63453	15	4	9	2	26
CRW_00634	Intron_gpI links to Rfam database...	0.62	0.62	0.62	58	64526	36	9	27	0	36
CRW_00635	-	0.58	0.54	0.62	74	109159	46	8	37	1	63
CRW_00636	-	0.61	0.57	0.64	82	114832	49	9	37	3	61
CRW_00637	-	0.42	0.39	0.44	62	133763	81	11	67	3	96
CRW_00639	-	0.89	0.86	0.94	118	126630	24	2	6	16	20
CRW_00641	-	0.83	0.82	0.85	62	39830	21	2	9	10	14
CRW_00642	-	0.57	0.60	0.53	39	47205	42	9	25	8	26
CRW_00643	-	0.66	0.65	0.67	79	123138	62	11	28	23	43
CRW_00645	-	0.81	0.81	0.81	54	35444	19	6	7	6	13
CRW_00646	-	0.58	0.55	0.61	35	34923	24	4	18	2	29
CRW_00648	-	0.76	0.74	0.78	109	137936	41	10	20	11	39
CRW_00649	-	0.69	0.65	0.73	80	204371	103	9	20	74	44
CRW_00650	-	0.80	0.75	0.85	106	112925	24	3	16	5	36
CRW_00651	-	0.88	0.83	0.92	101	100018	17	0	9	8	20
CRW_00652	-	0.85	0.81	0.90	105	132238	38	1	11	26	25
CRW_00653	-	0.95	0.92	0.98	123	94704	6	0	3	3	11
CRW_00654	-	0.91	0.85	0.97	105	78102	4	0	3	1	19
CRW_00655	-	0.89	0.82	0.97	102	89148	7	0	3	4	22
CRW_00656	-	0.76	0.71	0.81	92	90412	25	6	15	4	37
CRW_00657	-	0.87	0.84	0.90	114	105904	22	2	10	10	22
CRW_00658	-	0.70	0.68	0.72	69	74595	33	5	22	6	33
CRW_00659	-	0.50	0.49	0.52	30	32327	37	5	23	9	31
CRW_00660	-	0.48	0.47	0.50	28	22099	31	5	23	3	32
CRW_00661	-	0.17	0.18	0.17	9	24256	46	11	34	1	42
CRW_00662	-	0.42	0.42	0.42	27	28616	44	7	30	7	38
CRW_00663	-	0.22	0.21	0.23	13	26050	48	8	35	5	48
CRW_00664	-	0.05	0.05	0.05	4	53549	78	21	54	3	74
CRW_00665	-	0.10	0.10	0.10	5	23605	44	16	27	1	43
CRW_00666	-	0.74	0.71	0.77	89	96026	30	4	22	4	37
CRW_00668	-	0.76	0.75	0.78	112	163734	44	6	26	12	38
CRW_00669	-	0.70	0.66	0.76	78	97358	34	2	23	9	41
CRW_00670	Intron_gpI links to Rfam database...	0.86	0.83	0.90	99	70015	11	4	7	0	21
CRW_00671	Intron_gpI links to Rfam database...	0.83	0.79	0.88	92	62731	12	3	9	0	25
CRW_00672	Intron_gpI links to Rfam database...	0.86	0.84	0.89	93	72285	13	4	8	1	18
CRW_00673	-	0.83	0.84	0.81	88	100020	30	14	6	10	17
CRW_00674	Intron_gpI links to Rfam database...	0.81	0.77	0.85	95	83324	19	1	16	2	29
CRW_00676	Intron_gpI links to Rfam database...	0.60	0.57	0.63	66	93424	41	9	29	3	49
CRW_00677	-	0.81	0.75	0.87	79	71919	17	5	7	5	26
CRW_00679	-	0.79	0.74	0.84	79	76542	19	5	10	4	28
CRW_00681	-	0.66	0.66	0.66	74	112938	53	13	25	15	38
CRW_00685	-	0.69	0.70	0.69	74	156972	62	16	18	28	32
CRW_00686	-	0.61	0.57	0.66	71	95159	48	2	34	12	54
CRW_00687	-	0.71	0.67	0.76	44	28622	18	6	8	4	22
CRW_00688	-	0.84	0.81	0.88	46	21893	6	2	4	0	11
CRW_00689	-	0.53	0.52	0.55	40	33597	35	6	27	2	37
CRW_00690	-	0.56	0.52	0.60	36	33351	28	5	19	4	33
CRW_00691	-	0.65	0.63	0.67	42	27198	24	3	18	3	25
CRW_00692	Intron_gpI links to Rfam database...	0.77	0.73	0.81	66	68554	24	6	9	9	24
CRW_00693	-	0.86	0.83	0.90	101	89141	22	0	11	11	21
CRW_00694	-	0.89	0.84	0.95	102	85798	7	0	5	2	20
CRW_00699	-	0.82	0.76	0.88	96	91697	14	0	13	1	30
CRW_00700	-	0.83	0.79	0.87	116	180767	38	2	16	20	31
CRW_00703	-	0.55	0.55	0.55	36	40405	36	9	20	7	30
CRW_00714	-	0.50	0.47	0.54	50	186263	93	12	30	51	57
CRW_00715	-	0.66	0.57	0.78	59	69302	19	1	16	2	45
CRW_00716	-	0.62	0.56	0.68	50	193679	82	2	22	58	39
CRW_00717	-	0.49	0.43	0.56	64	153620	68	11	40	17	84
CRW_00718	-	0.63	0.54	0.73	103	189894	55	1	38	16	88
CRW_00719	-	0.71	0.73	0.69	66	230086	86	15	14	57	25
CRW_00720	-	0.57	0.60	0.53	55	208231	98	25	24	49	36
CRW_00721	-	0.62	0.62	0.63	42	58586	53	8	17	28	26
CRW_00764	-	0.28	0.27	0.29	53	252935	134	29	99	6	143
CRW_00775	-	0.30	0.27	0.34	57	314654	128	18	92	18	155
CRW_00815	-	0.69	0.69	0.68	109	159735	53	14	37	2	49
CRW_00816	-	0.54	0.53	0.55	69	143791	66	13	43	10	60
CRW_00820	-	0.62	0.59	0.64	86	136369	59	8	40	11	59
PDB_00072	-	0.49	0.50	0.49	104	148029	107	13	94	0	106
PDB_00078	-	0.80	0.75	0.86	86	49670	14	3	11	0	29
PDB_00079	-	0.73	0.68	0.79	96	121649	52	10	16	26	46
PDB_00278	-	0.64	0.56	0.74	40	24922	14	0	14	0	32
PDB_00403	-	0.76	0.70	0.82	107	124619	34	7	17	10	46
PDB_00423	-	0.86	0.76	0.98	56	26739	1	1	0	0	18
PDB_00701	-	0.71	0.65	0.78	71	45360	24	0	20	4	38
PDB_00747	-	0.81	0.69	0.95	55	24473	3	0	3	0	25
PDB_00827	Intron_gpI links to Rfam database...	0.79	0.65	0.96	53	26973	3	0	2	1	28
PDB_00917	-	0.84	0.79	0.89	75	35161	19	4	5	10	20
PDB_00919	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.75	58	44176	24	1	18	5	45
PDB_01129	-	0.37	0.34	0.41	24	35453	38	18	16	4	47
PDB_01157	-	0.33	0.31	0.36	30	50003	54	10	43	1	68
PDB_01166	-	0.59	0.54	0.64	115	181926	70	7	58	5	97
RFA_00597	Telomerase-vert links to Rfam database...	0.40	0.40	0.39	44	97791	79	14	54	11	65
RFA_00598	Telomerase-vert links to Rfam database...	0.45	0.45	0.46	45	84568	67	11	42	14	56
RFA_00599	Telomerase-vert links to Rfam database...	0.27	0.27	0.27	30	101365	98	14	66	18	81
RFA_00600	Telomerase-vert links to Rfam database...	0.23	0.24	0.21	24	120183	108	34	54	20	76
RFA_00601	Telomerase-vert links to Rfam database...	0.33	0.35	0.32	40	99109	96	28	58	10	74
RFA_00602	Telomerase-vert links to Rfam database...	0.52	0.53	0.51	61	101356	72	21	37	14	55
TMR_00007	tmRNA links to Rfam database...	0.79	0.74	0.83	80	61680	20	4	12	4	28
TMR_00008	tmRNA links to Rfam database...	0.68	0.62	0.74	66	65977	29	9	14	6	40
TMR_00010	tmRNA links to Rfam database...	0.60	0.54	0.67	52	57892	26	2	24	0	44
TMR_00012	tmRNA links to Rfam database...	0.62	0.59	0.64	48	64545	39	7	20	12	33
TMR_00014	tmRNA links to Rfam database...	0.85	0.75	0.95	83	68548	9	1	3	5	27
TMR_00017	tmRNA links to Rfam database...	0.84	0.76	0.93	78	67077	6	2	4	0	24
TMR_00018	tmRNA links to Rfam database...	0.77	0.73	0.82	67	64538	15	7	8	0	25
TMR_00028	tmRNA links to Rfam database...	0.69	0.64	0.74	62	62751	23	5	17	1	35
TMR_00030	tmRNA links to Rfam database...	0.47	0.44	0.50	49	75757	50	10	39	1	62
TMR_00034	tmRNA links to Rfam database...	0.65	0.61	0.71	67	59936	33	1	27	5	43
TMR_00035	tmRNA links to Rfam database...	0.50	0.46	0.55	45	67814	43	4	33	6	53
TMR_00036	tmRNA links to Rfam database...	0.53	0.48	0.59	48	90443	62	6	28	28	53
TMR_00038	tmRNA links to Rfam database...	0.73	0.66	0.81	73	71163	17	5	12	0	37
TMR_00042	tmRNA links to Rfam database...	0.54	0.47	0.62	46	62761	31	4	24	3	52
TMR_00046	tmRNA links to Rfam database...	0.54	0.51	0.58	49	62750	39	6	30	3	47
TMR_00047	tmRNA links to Rfam database...	0.30	0.33	0.28	19	48448	51	17	32	2	38
TMR_00048	tmRNA links to Rfam database...	0.52	0.48	0.55	46	64897	44	5	32	7	49
TMR_00049	tmRNA links to Rfam database...	0.34	0.32	0.36	28	63112	58	9	41	8	59
TMR_00051	tmRNA links to Rfam database...	0.74	0.66	0.83	62	65628	24	0	13	11	32
TMR_00055	tmRNA links to Rfam database...	0.39	0.36	0.43	41	78907	55	15	40	0	73
TMR_00057	tmRNA links to Rfam database...	0.49	0.53	0.46	42	73829	57	19	30	8	37
TMR_00061	tmRNA links to Rfam database...	0.54	0.52	0.56	51	59594	50	9	31	10	48
TMR_00062	tmRNA links to Rfam database...	0.73	0.68	0.78	71	78515	29	7	13	9	33
TMR_00064	tmRNA links to Rfam database...	0.51	0.46	0.57	47	76945	38	8	28	2	56
TMR_00065	tmRNA links to Rfam database...	0.69	0.60	0.79	64	76555	18	5	12	1	42
TMR_00067	tmRNA links to Rfam database...	0.76	0.70	0.82	80	82117	21	4	14	3	34
TMR_00073	tmRNA links to Rfam database...	0.60	0.53	0.69	62	65613	28	4	24	0	55
TMR_00076	tmRNA links to Rfam database...	0.63	0.60	0.67	60	70786	39	10	20	9	40
TMR_00080	tmRNA links to Rfam database...	0.60	0.59	0.61	57	70407	37	8	28	1	39
TMR_00081	tmRNA links to Rfam database...	0.73	0.64	0.84	68	67080	14	1	12	1	38
TMR_00082	tmRNA links to Rfam database...	0.70	0.64	0.77	61	67817	20	7	11	2	35
TMR_00083	tmRNA links to Rfam database...	0.83	0.75	0.91	79	68178	9	2	6	1	26
TMR_00092	tmRNA links to Rfam database...	0.63	0.63	0.62	64	67425	43	9	30	4	37
TMR_00093	tmRNA links to Rfam database...	0.61	0.58	0.64	59	64169	35	8	25	2	43
TMR_00096	tmRNA links to Rfam database...	0.50	0.47	0.54	47	64893	40	13	27	0	53
TMR_00101	tmRNA links to Rfam database...	0.77	0.73	0.82	78	64166	19	3	14	2	29
TMR_00102	tmRNA links to Rfam database...	0.43	0.43	0.44	43	64164	56	9	45	2	58
TMR_00103	tmRNA links to Rfam database...	0.73	0.69	0.77	75	64163	25	9	14	2	33
TMR_00104	-	0.19	0.20	0.18	14	66716	73	24	41	8	56
TMR_00106	tmRNA links to Rfam database...	0.65	0.63	0.67	76	89987	41	7	30	4	44
TMR_00109	tmRNA links to Rfam database...	0.58	0.52	0.65	64	88311	41	4	31	6	58
TMR_00111	tmRNA links to Rfam database...	0.56	0.51	0.61	62	90424	42	9	30	3	60
TMR_00116	tmRNA links to Rfam database...	0.54	0.50	0.58	52	64890	45	5	33	7	52
TMR_00117	tmRNA links to Rfam database...	0.69	0.64	0.73	76	80096	38	7	21	10	42
TMR_00118	tmRNA links to Rfam database...	0.71	0.64	0.78	77	81307	29	3	19	7	43
TMR_00119	tmRNA links to Rfam database...	0.71	0.68	0.75	71	71915	28	6	18	4	33
TMR_00123	tmRNA links to Rfam database...	0.88	0.79	0.99	80	66349	1	1	0	0	21
TMR_00124	tmRNA links to Rfam database...	0.59	0.56	0.63	55	70412	41	8	25	8	43
TMR_00125	tmRNA links to Rfam database...	0.71	0.65	0.79	64	64180	21	5	12	4	35
TMR_00127	tmRNA links to Rfam database...	0.71	0.65	0.77	63	62753	26	2	17	7	34
TMR_00128	tmRNA links to Rfam database...	0.53	0.52	0.54	50	60982	43	10	33	0	46
TMR_00131	tmRNA links to Rfam database...	0.65	0.60	0.70	59	64896	27	3	22	2	40
TMR_00135	tmRNA links to Rfam database...	0.73	0.66	0.80	65	62754	25	2	14	9	34
TMR_00136	tmRNA links to Rfam database...	0.57	0.53	0.61	54	74602	42	5	30	7	47
TMR_00137	tmRNA links to Rfam database...	0.75	0.66	0.86	59	61006	13	1	9	3	30
TMR_00139	tmRNA links to Rfam database...	0.49	0.51	0.48	46	62033	53	17	32	4	45
TMR_00140	tmRNA links to Rfam database...	0.81	0.73	0.90	73	73839	21	5	3	13	27
TMR_00142	tmRNA links to Rfam database...	0.57	0.52	0.63	53	70792	41	6	25	10	49
TMR_00143	tmRNA links to Rfam database...	0.74	0.67	0.81	69	64535	26	4	12	10	34
TMR_00144	tmRNA links to Rfam database...	0.59	0.55	0.63	57	74214	34	7	27	0	46
TMR_00146	tmRNA links to Rfam database...	0.76	0.71	0.81	30	32094	32	3	4	25	12
TMR_00150	tmRNA links to Rfam database...	0.63	0.60	0.68	25	43034	45	3	9	33	17
TMR_00152	tmRNA links to Rfam database...	0.43	0.40	0.47	46	81309	59	2	49	8	69
TMR_00155	tmRNA links to Rfam database...	0.56	0.48	0.65	50	61699	34	1	26	7	54
TMR_00156	tmRNA links to Rfam database...	0.77	0.71	0.84	69	60296	17	3	10	4	28
TMR_00158	tmRNA links to Rfam database...	0.55	0.48	0.62	48	60649	30	1	28	1	51
TMR_00159	tmRNA links to Rfam database...	0.59	0.55	0.63	51	62047	32	6	24	2	41
TMR_00160	tmRNA links to Rfam database...	0.80	0.75	0.86	71	64537	20	5	7	8	24
TMR_00164	tmRNA links to Rfam database...	0.69	0.61	0.77	65	66711	21	1	18	2	41
TMR_00165	tmRNA links to Rfam database...	0.54	0.49	0.59	48	61695	39	7	26	6	49
TMR_00166	tmRNA links to Rfam database...	0.74	0.68	0.81	69	61691	16	5	11	0	32
TMR_00168	tmRNA links to Rfam database...	0.77	0.71	0.84	81	60979	19	1	14	4	33
TMR_00173	tmRNA links to Rfam database...	0.32	0.36	0.29	15	42144	55	13	23	19	27
TMR_00179	tmRNA links to Rfam database...	0.65	0.62	0.68	61	67071	37	3	26	8	37
TMR_00180	tmRNA links to Rfam database...	0.68	0.63	0.74	62	67077	27	6	16	5	37
TMR_00182	tmRNA links to Rfam database...	0.47	0.44	0.50	45	66340	50	4	41	5	57
TMR_00183	tmRNA links to Rfam database...	0.48	0.47	0.51	48	63095	49	3	44	2	55
TMR_00184	tmRNA links to Rfam database...	0.52	0.50	0.55	51	63097	43	4	38	1	51
TMR_00193	tmRNA links to Rfam database...	0.35	0.34	0.37	27	59267	55	11	35	9	53
TMR_00194	tmRNA links to Rfam database...	0.57	0.52	0.64	48	62760	30	1	26	3	45
TMR_00196	tmRNA links to Rfam database...	0.51	0.46	0.56	45	60994	40	8	28	4	52
TMR_00199	tmRNA links to Rfam database...	0.47	0.47	0.47	43	62744	53	17	31	5	49
TMR_00200	-	0.47	0.45	0.49	34	41546	45	7	29	9	41
TMR_00204	tmRNA links to Rfam database...	0.59	0.52	0.67	50	60303	28	7	18	3	47
TMR_00207	tmRNA links to Rfam database...	0.75	0.68	0.83	70	72306	15	2	12	1	33
TMR_00223	tmRNA links to Rfam database...	0.57	0.53	0.62	50	64180	32	9	22	1	45
TMR_00224	tmRNA links to Rfam database...	0.75	0.65	0.87	66	64904	15	3	7	5	35
TMR_00226	tmRNA links to Rfam database...	0.69	0.65	0.73	68	69658	31	5	20	6	37
TMR_00227	tmRNA links to Rfam database...	0.70	0.66	0.74	67	70034	27	4	20	3	34
TMR_00228	tmRNA links to Rfam database...	0.48	0.45	0.51	49	88313	48	14	34	0	59
TMR_00234	tmRNA links to Rfam database...	0.77	0.69	0.85	70	58914	17	2	10	5	32
TMR_00238	tmRNA links to Rfam database...	0.46	0.47	0.45	47	84562	64	12	45	7	54
TMR_00239	tmRNA links to Rfam database...	0.70	0.69	0.72	66	61684	26	7	19	0	30
TMR_00240	tmRNA links to Rfam database...	0.59	0.60	0.59	51	63103	40	12	24	4	34
TMR_00246	-	0.42	0.44	0.41	15	78173	83	5	17	61	19
TMR_00248	tmRNA links to Rfam database...	0.38	0.42	0.35	16	54239	62	17	13	32	22
TMR_00257	tmRNA links to Rfam database...	0.78	0.70	0.86	69	67081	11	1	10	0	29
TMR_00259	tmRNA links to Rfam database...	0.64	0.55	0.74	57	67819	20	7	13	0	46
TMR_00261	tmRNA links to Rfam database...	0.59	0.55	0.63	56	66706	33	7	26	0	45
TMR_00262	tmRNA links to Rfam database...	0.65	0.62	0.68	64	74211	31	6	24	1	40
TMR_00271	tmRNA links to Rfam database...	0.66	0.62	0.71	56	64182	27	6	17	4	35
TMR_00274	tmRNA links to Rfam database...	0.71	0.66	0.78	69	66706	25	4	16	5	36
TMR_00278	tmRNA links to Rfam database...	0.70	0.64	0.77	65	67812	25	2	17	6	37
TMR_00279	tmRNA links to Rfam database...	0.45	0.40	0.50	38	68930	46	5	33	8	56
TMR_00280	tmRNA links to Rfam database...	0.72	0.67	0.77	68	65978	26	1	19	6	33
TMR_00283	tmRNA links to Rfam database...	0.64	0.58	0.70	56	65261	31	8	16	7	40
TMR_00289	tmRNA links to Rfam database...	0.63	0.63	0.63	62	67063	39	16	20	3	36
TMR_00290	tmRNA links to Rfam database...	0.64	0.63	0.66	58	64173	35	4	26	5	34
TMR_00296	tmRNA links to Rfam database...	0.29	0.29	0.29	28	68910	68	16	52	0	70
TMR_00298	tmRNA links to Rfam database...	0.50	0.47	0.54	47	68178	43	9	31	3	54
TMR_00300	tmRNA links to Rfam database...	0.53	0.49	0.57	55	70404	48	3	38	7	57
TMR_00301	tmRNA links to Rfam database...	0.68	0.63	0.73	60	82133	33	5	17	11	36
TMR_00302	tmRNA links to Rfam database...	0.55	0.54	0.56	51	77330	49	11	29	9	43
TMR_00305	tmRNA links to Rfam database...	0.78	0.70	0.88	71	60994	17	2	8	7	31
TMR_00306	tmRNA links to Rfam database...	0.79	0.75	0.83	79	64166	19	2	14	3	27
TMR_00310	tmRNA links to Rfam database...	0.61	0.56	0.66	55	63820	32	3	25	4	43
TMR_00317	tmRNA links to Rfam database...	0.61	0.59	0.64	60	68171	37	3	31	3	42
TMR_00331	tmRNA links to Rfam database...	0.48	0.49	0.48	40	66712	56	9	34	13	42
TMR_00332	tmRNA links to Rfam database...	0.78	0.70	0.88	69	67083	10	2	7	1	30
TMR_00334	tmRNA links to Rfam database...	0.77	0.68	0.87	69	66716	10	3	7	0	32
TMR_00337	tmRNA links to Rfam database...	0.57	0.51	0.64	61	82933	34	3	31	0	58
TMR_00340	tmRNA links to Rfam database...	0.63	0.58	0.68	47	64192	38	6	16	16	34
TMR_00341	tmRNA links to Rfam database...	0.63	0.60	0.65	55	63106	31	8	21	2	37
TMR_00343	tmRNA links to Rfam database...	0.74	0.69	0.80	72	64890	18	2	16	0	33
TMR_00345	tmRNA links to Rfam database...	0.62	0.60	0.65	62	63808	39	3	30	6	42
TMR_00346	tmRNA links to Rfam database...	0.65	0.60	0.70	56	64181	26	5	19	2	38
TMR_00348	tmRNA links to Rfam database...	0.41	0.36	0.47	36	77344	54	8	33	13	63
TMR_00352	tmRNA links to Rfam database...	0.25	0.28	0.23	21	95173	89	16	56	17	54
TMR_00353	tmRNA links to Rfam database...	0.51	0.48	0.56	50	84165	52	10	30	12	55
TMR_00357	tmRNA links to Rfam database...	0.53	0.52	0.54	48	82939	55	17	24	14	44
TMR_00358	tmRNA links to Rfam database...	0.66	0.60	0.74	59	74998	36	4	17	15	40
TMR_00361	-	0.36	0.44	0.29	32	93419	78	34	43	1	40
TMR_00366	tmRNA links to Rfam database...	0.51	0.48	0.54	48	67807	51	15	26	10	52
TMR_00372	tmRNA links to Rfam database...	0.64	0.65	0.64	62	70403	44	9	26	9	34
TMR_00374	tmRNA links to Rfam database...	0.61	0.60	0.63	55	81723	34	12	20	2	37
TMR_00375	tmRNA links to Rfam database...	0.65	0.58	0.72	57	73457	34	3	19	12	41
TMR_00376	tmRNA links to Rfam database...	0.65	0.61	0.68	58	74606	35	11	16	8	37
TMR_00378	tmRNA links to Rfam database...	0.52	0.49	0.55	48	67809	45	13	26	6	49
TMR_00383	tmRNA links to Rfam database...	0.56	0.53	0.59	53	66705	44	7	30	7	47
TMR_00384	tmRNA links to Rfam database...	0.82	0.72	0.93	78	65619	6	0	6	0	30
TMR_00393	tmRNA links to Rfam database...	0.62	0.62	0.61	33	53247	59	9	12	38	20
TMR_00395	tmRNA links to Rfam database...	0.77	0.68	0.87	74	64535	11	4	7	0	35
TMR_00398	tmRNA links to Rfam database...	0.76	0.69	0.85	73	65255	13	5	8	0	33
TMR_00399	tmRNA links to Rfam database...	0.55	0.53	0.56	50	64891	41	11	28	2	44
TMR_00404	tmRNA links to Rfam database...	0.70	0.70	0.70	64	67437	40	9	18	13	28
TMR_00408	tmRNA links to Rfam database...	0.54	0.52	0.57	46	65985	39	12	23	4	42
TMR_00409	tmRNA links to Rfam database...	0.85	0.85	0.85	39	68589	57	1	6	50	7
TMR_00411	tmRNA links to Rfam database...	0.40	0.40	0.41	35	60989	58	10	41	7	52
TMR_00415	tmRNA links to Rfam database...	0.57	0.55	0.60	56	67067	42	4	34	4	45
TMR_00419	tmRNA links to Rfam database...	0.50	0.43	0.59	48	81728	50	7	27	16	63
TMR_00422	tmRNA links to Rfam database...	0.55	0.53	0.58	49	67811	44	7	29	8	43
TMR_00423	tmRNA links to Rfam database...	0.52	0.56	0.49	41	63819	50	17	26	7	32
TMR_00427	tmRNA links to Rfam database...	0.70	0.66	0.74	64	67442	25	8	14	3	33
TMR_00429	tmRNA links to Rfam database...	0.70	0.64	0.76	70	74599	24	7	15	2	39
TMR_00430	tmRNA links to Rfam database...	0.39	0.38	0.40	41	82518	64	15	47	2	68
TMR_00431	tmRNA links to Rfam database...	0.68	0.65	0.71	36	51952	44	3	12	29	19
TMR_00432	tmRNA links to Rfam database...	0.68	0.65	0.70	68	79703	34	11	18	5	36
TMR_00433	tmRNA links to Rfam database...	0.60	0.57	0.65	60	80107	34	6	27	1	46
TMR_00439	tmRNA links to Rfam database...	0.61	0.55	0.67	56	68552	32	4	23	5	45
TMR_00441	tmRNA links to Rfam database...	0.18	0.18	0.19	15	62048	70	14	51	5	68
TMR_00443	tmRNA links to Rfam database...	0.87	0.77	0.99	80	67080	1	1	0	0	24
TMR_00448	tmRNA links to Rfam database...	0.76	0.68	0.85	63	62054	11	0	11	0	29
TMR_00451	tmRNA links to Rfam database...	0.69	0.62	0.77	55	63475	16	5	11	0	34
TMR_00457	tmRNA links to Rfam database...	0.61	0.59	0.63	60	78511	38	4	31	3	42
TMR_00458	tmRNA links to Rfam database...	0.73	0.68	0.79	63	63466	18	2	15	1	30
TMR_00460	tmRNA links to Rfam database...	0.68	0.65	0.71	69	79304	31	6	22	3	37
TMR_00465	tmRNA links to Rfam database...	0.59	0.56	0.62	53	64176	33	13	19	1	41
TMR_00469	tmRNA links to Rfam database...	0.79	0.74	0.84	74	64532	14	9	5	0	26
TMR_00472	tmRNA links to Rfam database...	0.72	0.67	0.77	65	64536	23	7	12	4	32
TMR_00478	tmRNA links to Rfam database...	0.44	0.44	0.44	44	71910	58	18	38	2	55
TMR_00498	tmRNA links to Rfam database...	0.70	0.68	0.72	67	68913	26	9	17	0	32
TMR_00499	tmRNA links to Rfam database...	0.45	0.44	0.46	44	64525	57	4	47	6	55
TMR_00501	tmRNA links to Rfam database...	0.49	0.47	0.52	43	62398	42	9	31	2	49
TMR_00502	tmRNA links to Rfam database...	0.61	0.57	0.65	53	75384	32	10	19	3	40
TMR_00503	tmRNA links to Rfam database...	0.73	0.68	0.78	76	67799	28	3	18	7	35
TMR_00519	tmRNA links to Rfam database...	0.72	0.65	0.79	62	63112	19	2	14	3	33
TMR_00520	tmRNA links to Rfam database...	0.72	0.67	0.78	66	63105	28	0	19	9	33
TMR_00522	tmRNA links to Rfam database...	0.64	0.61	0.67	59	63102	37	3	26	8	38
TMR_00528	tmRNA links to Rfam database...	0.77	0.70	0.85	68	63110	12	6	6	0	29
TMR_00540	tmRNA links to Rfam database...	0.74	0.67	0.80	70	73449	19	6	11	2	34
TMR_00541	tmRNA links to Rfam database...	0.61	0.57	0.65	60	61683	38	0	33	5	45
TMR_00544	tmRNA links to Rfam database...	0.52	0.49	0.55	53	89580	48	12	31	5	55
TMR_00547	tmRNA links to Rfam database...	0.73	0.65	0.81	65	65261	17	1	14	2	35
TMR_00553	tmRNA links to Rfam database...	0.51	0.46	0.58	37	48141	31	6	21	4	44
TMR_00559	tmRNA links to Rfam database...	0.67	0.62	0.72	63	62393	25	9	16	0	38
TMR_00560	tmRNA links to Rfam database...	0.69	0.64	0.73	63	60989	23	10	13	0	35
TMR_00562	tmRNA links to Rfam database...	0.53	0.48	0.59	49	72688	42	2	32	8	53
TMR_00563	tmRNA links to Rfam database...	0.74	0.72	0.76	74	75368	33	9	15	9	29
TMR_00566	tmRNA links to Rfam database...	0.59	0.55	0.63	55	60638	36	3	30	3	45
TMR_00568	tmRNA links to Rfam database...	0.69	0.63	0.76	62	60644	22	2	18	2	37
TMR_00570	tmRNA links to Rfam database...	0.58	0.54	0.63	52	60295	35	5	26	4	45
TMR_00571	tmRNA links to Rfam database...	0.61	0.57	0.66	56	60641	35	2	27	6	43
TMR_00576	tmRNA links to Rfam database...	0.84	0.78	0.90	80	60289	12	6	3	3	22
TMR_00579	tmRNA links to Rfam database...	0.38	0.40	0.37	36	80503	74	17	45	12	54
TMR_00580	tmRNA links to Rfam database...	0.68	0.65	0.71	65	60635	29	7	19	3	35
TMR_00581	tmRNA links to Rfam database...	0.73	0.67	0.79	66	62397	23	4	14	5	32
TMR_00584	tmRNA links to Rfam database...	0.80	0.73	0.88	71	60994	14	4	6	4	26
TMR_00586	tmRNA links to Rfam database...	0.68	0.64	0.73	62	60990	26	8	15	3	35
TMR_00587	tmRNA links to Rfam database...	0.82	0.77	0.88	77	61337	11	4	7	0	23
TMR_00588	tmRNA links to Rfam database...	0.53	0.48	0.60	48	77341	41	5	27	9	53
TMR_00594	tmRNA links to Rfam database...	0.61	0.55	0.69	57	79318	30	7	19	4	47
TMR_00596	tmRNA links to Rfam database...	0.53	0.49	0.57	47	78127	45	11	25	9	48
TMR_00599	tmRNA links to Rfam database...	0.45	0.49	0.42	35	63106	62	18	31	13	37
TMR_00600	tmRNA links to Rfam database...	0.72	0.63	0.82	72	79712	18	6	10	2	43
TMR_00601	tmRNA links to Rfam database...	0.69	0.67	0.72	28	58957	55	1	10	44	14
TMR_00603	tmRNA links to Rfam database...	0.80	0.74	0.86	32	60341	49	1	4	44	11
TMR_00604	tmRNA links to Rfam database...	0.78	0.72	0.84	81	62738	16	2	14	0	31
TMR_00605	tmRNA links to Rfam database...	0.59	0.55	0.63	59	74211	39	11	24	4	49
TMR_00606	tmRNA links to Rfam database...	0.67	0.64	0.70	69	68907	35	9	21	5	38
TMR_00609	tmRNA links to Rfam database...	0.68	0.66	0.71	75	63440	31	8	23	0	38
TMR_00610	tmRNA links to Rfam database...	0.79	0.74	0.85	77	62037	21	6	8	7	27
TMR_00611	tmRNA links to Rfam database...	0.71	0.70	0.73	71	61328	26	6	20	0	31
TMR_00612	tmRNA links to Rfam database...	0.46	0.45	0.47	47	60625	54	7	47	0	57
TMR_00614	tmRNA links to Rfam database...	0.69	0.64	0.74	67	60984	30	2	22	6	37
TMR_00615	tmRNA links to Rfam database...	0.78	0.72	0.84	69	63821	18	7	6	5	27
TMR_00616	tmRNA links to Rfam database...	0.63	0.62	0.65	61	67067	34	8	25	1	38
TMR_00617	tmRNA links to Rfam database...	0.61	0.62	0.61	36	34657	27	9	14	4	22
TMR_00623	tmRNA links to Rfam database...	0.63	0.56	0.72	60	61342	25	2	21	2	48
TMR_00624	tmRNA links to Rfam database...	0.55	0.53	0.58	57	62383	46	7	34	5	51
TMR_00625	tmRNA links to Rfam database...	0.52	0.50	0.55	53	78907	44	12	31	1	53
TMR_00626	tmRNA links to Rfam database...	0.77	0.72	0.84	78	67803	22	6	9	7	31
TMR_00680	tmRNA links to Rfam database...	0.33	0.32	0.33	32	67800	68	12	52	4	67
TMR_00681	tmRNA links to Rfam database...	0.62	0.60	0.65	58	65977	31	4	27	0	39
TMR_00683	tmRNA links to Rfam database...	0.56	0.57	0.55	57	82925	58	13	33	12	43
TMR_00686	tmRNA links to Rfam database...	0.68	0.67	0.69	72	71148	33	11	22	0	36
TMR_00687	tmRNA links to Rfam database...	0.72	0.68	0.75	76	71530	25	9	16	0	35
TMR_00696	tmRNA links to Rfam database...	0.51	0.47	0.55	54	84980	55	7	37	11	60
TMR_00698	tmRNA links to Rfam database...	0.55	0.50	0.60	52	63104	37	3	31	3	52
TMR_00699	tmRNA links to Rfam database...	0.80	0.75	0.85	76	67072	13	3	10	0	26
TMR_00702	tmRNA links to Rfam database...	0.77	0.71	0.84	71	67076	14	4	10	0	29
TMR_00703	tmRNA links to Rfam database...	0.84	0.76	0.94	75	67448	5	1	4	0	24
TMR_00706	tmRNA links to Rfam database...	0.61	0.52	0.70	54	66353	23	3	20	0	49
TMR_00711	tmRNA links to Rfam database...	0.45	0.44	0.46	43	67802	53	11	40	2	55
TMR_00712	tmRNA links to Rfam database...	0.61	0.57	0.66	62	78512	40	1	31	8	47
TMR_00716	tmRNA links to Rfam database...	0.60	0.55	0.65	55	62751	33	1	28	4	45

^top

Performance of MaxExpect - scored lower in this pairwise comparison

1. Total counts & total scores for MaxExpect

Total Base Pair Counts
Total TP	32135
Total TN	43339650
Total FP	33416
Total FP CONTRA	4735
Total FP INCONS	22817
Total FP COMP	5864
Total FN	30740

Total Scores
MCC	0.524
Average MCC ± 95% Confidence Intervals	0.522 ± 0.014
Sensitivity	0.511
Positive Predictive Value	0.538
Nr of predictions	610

^top

2. Individual counts for MaxExpect [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.63	0.61	0.66	46	34121	30	2	22	6	29
ASE_00002	RNaseP_arch links to Rfam database...	0.71	0.67	0.74	49	35445	20	2	15	3	24
ASE_00004	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.74	67	47804	25	9	15	1	30
ASE_00005	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.75	67	57881	28	0	22	6	50
ASE_00006	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.55	51	47494	47	10	31	6	42
ASE_00007	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.79	75	59590	27	0	20	7	35
ASE_00009	RNaseP_arch links to Rfam database...	0.36	0.34	0.38	23	26045	39	4	34	1	44
ASE_00012	RNaseP_bact_a links to Rfam database...	0.50	0.44	0.57	54	73825	45	2	39	4	69
ASE_00014	RNaseP_arch links to Rfam database...	0.42	0.42	0.44	44	54184	65	2	55	8	62
ASE_00017	RNaseP_nuc links to Rfam database...	0.18	0.20	0.16	13	50959	82	24	44	14	51
ASE_00018	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	69	80479	55	1	52	2	65
ASE_00020	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.64	72	73807	43	6	35	2	54
ASE_00021	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.68	86	104069	48	4	37	7	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.49	0.45	0.54	56	82924	54	4	44	6	68
ASE_00023	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.68	82	84134	42	5	34	3	45
ASE_00025	RNaseP_nuc links to Rfam database...	0.28	0.30	0.27	21	78529	108	9	47	52	50
ASE_00026	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.60	57	59590	43	2	36	5	53
ASE_00028	RNaseP_bact_b links to Rfam database...	0.72	0.69	0.76	87	84551	37	5	23	9	39
ASE_00029	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.64	68	82922	40	5	33	2	54
ASE_00030	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.69	87	85365	40	3	36	1	58
ASE_00031	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	86	86623	35	1	26	8	40
ASE_00032	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	65	80086	55	7	42	6	53
ASE_00033	RNaseP_bact_a links to Rfam database...	0.33	0.30	0.38	36	64885	61	3	56	2	85
ASE_00035	RNaseP_bact_a links to Rfam database...	0.39	0.36	0.42	42	70400	65	4	54	7	76
ASE_00036	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.53	64	75734	60	8	49	3	68
ASE_00037	RNaseP_bact_a links to Rfam database...	0.45	0.40	0.50	44	59252	47	0	44	3	66
ASE_00038	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.81	71	53540	25	2	15	8	30
ASE_00040	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	66	78886	58	3	48	7	67
ASE_00041	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.48	45	57536	52	4	45	3	63
ASE_00042	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.52	66	89972	66	2	60	4	79
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.73	0.74	77	54511	32	4	23	5	28
ASE_00046	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.76	59	50325	21	0	19	2	44
ASE_00047	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.61	73	74186	47	2	44	1	57
ASE_00052	RNaseP_bact_a links to Rfam database...	0.59	0.52	0.67	58	61338	35	3	26	6	54
ASE_00053	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.68	79	79284	44	3	35	6	54
ASE_00056	-	0.53	0.44	0.63	32	30825	23	2	17	4	40
ASE_00057	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.61	81	82082	56	8	44	4	53
ASE_00064	RNaseP_bact_a links to Rfam database...	0.39	0.39	0.38	35	45359	64	6	51	7	54
ASE_00066	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.58	67	72274	51	1	48	2	63
ASE_00068	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	48	37605	27	2	20	5	37
ASE_00069	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.70	87	82903	41	5	33	3	53
ASE_00074	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	61	67782	55	4	49	2	58
ASE_00075	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.75	102	108675	41	2	32	7	60
ASE_00076	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	58	68156	54	2	49	3	60
ASE_00077	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.58	46	45071	39	4	29	6	40
ASE_00078	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.79	55	43001	20	1	14	5	28
ASE_00079	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	51	55522	39	2	36	1	49
ASE_00080	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	66	71521	49	6	38	5	57
ASE_00081	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.87	69	49691	11	1	9	1	28
ASE_00082	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	85	70403	25	0	12	13	31
ASE_00083	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	75	62385	26	2	19	5	35
ASE_00084	RNaseP_bact_a links to Rfam database...	0.78	0.75	0.82	74	53538	21	1	15	5	25
ASE_00087	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.77	93	88289	34	1	27	6	51
ASE_00089	-	0.49	0.46	0.52	36	31306	37	1	32	4	43
ASE_00090	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.67	68	55509	41	4	30	7	33
ASE_00092	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	80	63447	23	3	16	4	33
ASE_00096	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	52	63442	53	4	48	1	63
ASE_00099	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	84	64522	19	0	14	5	36
ASE_00100	RNaseP_nuc links to Rfam database...	0.32	0.32	0.32	24	82141	105	5	45	55	52
ASE_00102	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.62	85	117718	56	5	47	4	81
ASE_00104	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.76	78	64158	28	2	23	3	41
ASE_00105	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	45	64166	58	6	44	8	66
ASE_00107	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	88	73041	26	1	23	2	39
ASE_00108	RNaseP_nuc links to Rfam database...	0.49	0.49	0.49	31	46908	62	3	29	30	32
ASE_00111	RNaseP_nuc links to Rfam database...	0.26	0.28	0.25	16	50022	66	11	37	18	41
ASE_00112	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.77	83	75358	33	4	21	8	33
ASE_00115	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	69	54519	35	4	23	8	32
ASE_00116	RNaseP_arch links to Rfam database...	0.32	0.30	0.34	20	31567	42	4	35	3	46
ASE_00118	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	48	60632	49	3	43	3	54
ASE_00119	RNaseP_bact_a links to Rfam database...	0.82	0.81	0.83	87	62730	20	2	16	2	21
ASE_00120	RNaseP_arch links to Rfam database...	0.59	0.54	0.65	51	46892	30	3	25	2	43
ASE_00121	RNaseP_arch links to Rfam database...	0.25	0.25	0.25	23	45059	70	6	62	2	69
ASE_00122	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.76	56	43291	18	0	18	0	32
ASE_00123	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.56	43	38426	39	2	32	5	42
ASE_00125	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.79	58	39267	23	0	15	8	30
ASE_00126	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.84	66	40391	19	1	12	6	16
ASE_00128	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.80	71	53212	26	1	17	8	29
ASE_00129	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.75	77	62733	30	3	22	5	34
ASE_00131	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	50	39265	33	1	24	8	35
ASE_00132	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.72	61	50318	28	4	20	4	34
ASE_00134	RNaseP_bact_a links to Rfam database...	0.40	0.41	0.40	39	50305	62	8	51	3	56
ASE_00135	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.68	69	63089	39	1	31	7	40
ASE_00136	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.83	70	48121	22	0	14	8	22
ASE_00137	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.67	61	48425	35	1	29	5	37
ASE_00138	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.64	48	40395	29	7	20	2	33
ASE_00139	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.69	60	54198	33	0	27	6	44
ASE_00140	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.75	80	70770	29	4	22	3	45
ASE_00142	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.74	79	67054	32	3	25	4	43
ASE_00145	RNaseP_arch links to Rfam database...	0.58	0.57	0.59	63	70018	48	4	40	4	48
ASE_00146	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.69	71	70773	35	1	31	3	53
ASE_00148	RNaseP_arch links to Rfam database...	0.71	0.69	0.72	107	112427	45	3	38	4	47
ASE_00151	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	65	51917	27	5	16	6	33
ASE_00153	RNaseP_nuc links to Rfam database...	0.57	0.59	0.54	43	57551	71	8	28	35	30
ASE_00154	RNaseP_arch links to Rfam database...	0.58	0.58	0.58	62	65234	49	4	41	4	45
ASE_00155	RNaseP_arch links to Rfam database...	0.53	0.51	0.54	73	93394	64	10	51	3	69
ASE_00163	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.33	28	53217	64	4	52	8	65
ASE_00165	RNaseP_bact_a links to Rfam database...	0.45	0.45	0.46	45	52878	53	5	47	1	56
ASE_00168	RNaseP_nuc links to Rfam database...	0.18	0.22	0.15	14	60630	98	28	54	16	50
ASE_00169	RNaseP_bact_a links to Rfam database...	0.47	0.40	0.54	43	57212	40	1	35	4	64
ASE_00170	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.77	63	48746	25	2	17	6	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.74	66	48427	24	6	17	1	28
ASE_00172	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.78	73	58902	27	1	20	6	33
ASE_00174	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.51	53	60972	52	8	42	2	56
ASE_00175	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.73	71	59934	32	2	24	6	36
ASE_00176	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.68	61	59941	32	4	25	3	49
ASE_00179	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.59	48	44171	34	5	29	0	36
ASE_00180	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.73	68	51267	30	7	18	5	32
ASE_00181	RNaseP_bact_a links to Rfam database...	0.70	0.64	0.76	68	57540	27	3	19	5	38
ASE_00182	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.61	79	84126	53	5	45	3	57
ASE_00183	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.75	76	61324	31	0	25	6	37
ASE_00184	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	72	54516	30	1	26	3	30
ASE_00185	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.81	90	73425	27	1	20	6	38
ASE_00186	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.72	82	78889	39	3	29	7	50
ASE_00187	RNaseP_arch links to Rfam database...	0.40	0.38	0.43	44	68532	66	6	53	7	71
ASE_00189	RNaseP_bact_b links to Rfam database...	0.67	0.65	0.69	66	63095	34	1	28	5	36
ASE_00190	RNaseP_bact_b links to Rfam database...	0.60	0.57	0.63	51	45370	35	3	27	5	39
ASE_00192	RNaseP_bact_b links to Rfam database...	0.51	0.47	0.55	63	84552	57	6	45	6	70
ASE_00194	RNaseP_bact_b links to Rfam database...	0.48	0.45	0.50	54	73428	58	8	46	4	65
ASE_00195	-	0.64	0.59	0.69	78	86207	40	3	32	5	55
ASE_00196	RNaseP_arch links to Rfam database...	0.78	0.77	0.79	58	31553	19	2	13	4	17
ASE_00197	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.64	82	89125	52	2	44	6	63
ASE_00198	RNaseP_bact_a links to Rfam database...	0.84	0.77	0.91	79	52563	14	2	6	6	23
ASE_00203	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.75	67	46576	28	4	18	6	29
ASE_00204	RNaseP_bact_b links to Rfam database...	0.66	0.62	0.70	69	67798	34	6	23	5	43
ASE_00205	RNaseP_arch links to Rfam database...	0.62	0.62	0.62	56	45965	39	7	28	4	34
ASE_00209	RNaseP_arch links to Rfam database...	0.40	0.39	0.43	34	42991	46	5	41	0	54
ASE_00210	RNaseP_arch links to Rfam database...	0.65	0.66	0.64	43	27194	24	6	18	0	22
ASE_00212	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.65	84	93832	50	1	44	5	64
ASE_00213	RNaseP_arch links to Rfam database...	0.72	0.71	0.73	47	27197	20	3	14	3	19
ASE_00214	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.82	80	56182	27	3	15	9	23
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	57	48425	38	5	29	4	42
ASE_00216	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	44	39262	35	9	25	1	38
ASE_00217	RNaseP_bact_a links to Rfam database...	0.38	0.34	0.41	31	40395	49	5	39	5	59
ASE_00221	RNaseP_bact_a links to Rfam database...	0.63	0.56	0.71	65	64529	30	1	25	4	52
ASE_00222	RNaseP_arch links to Rfam database...	0.58	0.56	0.60	88	111955	58	4	54	0	69
ASE_00227	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	72	78879	52	7	45	0	61
ASE_00228	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	46	46885	42	11	29	2	40
ASE_00229	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.78	60	42409	23	1	16	6	27
ASE_00231	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.64	57	47806	35	4	28	3	39
ASE_00232	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	55	38419	32	10	19	3	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.66	71	75358	43	2	35	6	58
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45677	93	28	48	17	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.77	75	64163	29	2	21	6	39
ASE_00240	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	60	46582	29	1	22	6	33
ASE_00241	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	47	43879	35	1	29	5	40
ASE_00242	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.67	67	60975	34	1	32	1	45
ASE_00246	RNaseP_nuc links to Rfam database...	0.36	0.37	0.36	25	48135	68	14	31	23	42
ASE_00247	RNaseP_nuc links to Rfam database...	0.62	0.63	0.63	40	54221	65	7	17	41	24
ASE_00248	RNaseP_bact_a links to Rfam database...	0.40	0.36	0.44	41	62388	53	2	50	1	73
ASE_00250	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.70	76	78894	37	0	33	4	55
ASE_00252	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	95	115289	64	2	54	8	73
ASE_00254	RNaseP_bact_a links to Rfam database...	0.38	0.35	0.41	29	36786	46	5	36	5	53
ASE_00255	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	70	74572	52	4	45	3	60
ASE_00257	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.61	54	50951	41	3	32	6	43
ASE_00259	RNaseP_bact_a links to Rfam database...	0.49	0.42	0.57	51	73063	42	3	36	3	70
ASE_00263	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.71	81	70386	35	3	30	2	39
ASE_00264	RNaseP_nuc links to Rfam database...	0.54	0.51	0.58	51	49053	48	1	36	11	49
ASE_00267	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.70	54	45073	32	1	22	9	34
ASE_00270	RNaseP_bact_a links to Rfam database...	0.81	0.78	0.84	100	72271	24	1	18	5	28
ASE_00274	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.68	59	55524	30	5	23	2	44
ASE_00277	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.42	39	48113	55	9	44	2	52
ASE_00279	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	48	53207	48	7	39	2	53
ASE_00280	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	48	51914	45	8	33	4	50
ASE_00281	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.76	61	44471	28	0	19	9	27
ASE_00282	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	56	77690	69	5	64	0	71
ASE_00283	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.79	77	61678	27	3	18	6	30
ASE_00284	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.71	71	58211	37	4	25	8	37
ASE_00285	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.86	92	68899	25	3	12	10	30
ASE_00286	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	35	46581	58	2	47	9	57
ASE_00287	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	70	54854	28	2	20	6	33
ASE_00288	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.33	29	45967	62	6	54	2	64
ASE_00289	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.66	85	100897	47	3	40	4	72
ASE_00291	-	0.40	0.40	0.40	38	48422	57	9	47	1	56
ASE_00292	RNaseP_bact_a links to Rfam database...	0.47	0.43	0.52	60	81694	59	1	55	3	78
ASE_00294	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.81	113	114342	31	0	26	5	58
ASE_00295	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.70	71	73819	33	3	27	3	60
ASE_00296	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	59	91680	69	7	60	2	86
ASE_00297	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.77	71	52883	24	3	18	3	27
ASE_00298	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	56	67425	50	1	46	3	57
ASE_00299	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	54	49360	45	3	38	4	46
ASE_00313	RNaseP_nuc links to Rfam database...	0.66	0.67	0.64	60	62387	55	9	25	21	29
ASE_00316	RNaseP_nuc links to Rfam database...	0.57	0.54	0.60	53	107791	74	4	32	38	45
ASE_00318	RNaseP_bact_b links to Rfam database...	0.64	0.63	0.65	74	80087	44	14	25	5	44
ASE_00327	RNaseP_nuc links to Rfam database...	0.79	0.76	0.82	68	57208	34	5	10	19	21
ASE_00328	RNaseP_bact_b links to Rfam database...	0.67	0.63	0.73	70	72675	40	4	22	14	42
ASE_00330	RNaseP_nuc links to Rfam database...	0.64	0.66	0.62	59	56185	51	6	30	15	31
ASE_00332	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	68	81683	62	2	57	3	70
ASE_00335	RNaseP_bact_b links to Rfam database...	0.62	0.58	0.66	67	75364	42	6	29	7	49
ASE_00337	RNaseP_nuc links to Rfam database...	0.39	0.41	0.38	29	39263	60	5	43	12	42
ASE_00338	RNaseP_nuc links to Rfam database...	0.68	0.63	0.74	62	66346	38	3	19	16	36
ASE_00339	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.70	70	80100	37	2	28	7	49
ASE_00340	RNaseP_bact_a links to Rfam database...	0.74	0.74	0.73	63	45970	27	7	16	4	22
ASE_00342	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.67	67	62381	34	1	32	1	48
ASE_00343	RNaseP_bact_a links to Rfam database...	0.68	0.68	0.69	77	83324	49	8	27	14	36
ASE_00346	RNaseP_arch links to Rfam database...	0.43	0.41	0.45	40	48117	56	4	44	8	57
ASE_00353	RNaseP_bact_a links to Rfam database...	0.57	0.57	0.58	61	57864	49	4	41	4	46
ASE_00359	RNaseP_arch links to Rfam database...	0.25	0.24	0.26	19	42704	55	5	50	0	61
ASE_00360	RNaseP_arch links to Rfam database...	0.29	0.28	0.31	18	29344	46	9	32	5	47
ASE_00361	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.56	67	75347	55	10	42	3	60
ASE_00362	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.58	53	48114	41	2	36	3	38
ASE_00363	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.60	52	51274	41	2	32	7	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	74	54190	29	1	20	8	31
ASE_00366	RNaseP_bact_a links to Rfam database...	0.41	0.42	0.41	41	58553	60	6	53	1	57
ASE_00367	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	44	42997	38	1	29	8	42
ASE_00369	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.64	67	55841	39	1	36	2	40
ASE_00370	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.82	61	41831	22	1	12	9	23
ASE_00372	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.71	65	51911	33	5	22	6	35
ASE_00374	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.72	63	44763	26	3	21	2	25
ASE_00375	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	86	60280	19	1	11	7	24
ASE_00376	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	67	56858	30	1	27	2	38
ASE_00377	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	75	57531	30	3	21	6	32
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.63	50	45977	39	3	26	10	39
ASE_00380	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.74	66	54857	28	6	17	5	33
ASE_00382	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.70	55	41826	29	6	18	5	29
ASE_00383	RNaseP_bact_a links to Rfam database...	0.46	0.42	0.50	44	54527	47	3	41	3	61
ASE_00384	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	54	48430	37	2	30	5	38
ASE_00385	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.53	41	41827	41	12	25	4	40
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	49	50317	39	7	30	2	47
ASE_00387	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.73	69	55851	30	1	24	5	35
ASE_00388	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.67	49	45680	34	1	23	10	40
ASE_00390	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	51	42115	39	0	29	10	34
ASE_00393	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.51	43	47810	49	2	40	7	50
ASE_00394	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	71	46882	23	2	16	5	22
ASE_00395	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.68	55	41535	32	2	24	6	29
ASE_00396	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.58	43	41542	36	2	29	5	40
ASE_00397	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.60	59	54517	43	4	35	4	46
ASE_00398	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	60	55854	39	1	30	8	44
ASE_00400	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	67	57874	34	1	28	5	39
ASE_00401	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	79	76910	40	5	34	1	47
ASE_00402	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.77	58	42411	22	2	15	5	27
ASE_00403	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.47	45	55850	54	1	49	4	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	42	42998	39	1	30	8	43
ASE_00406	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.87	71	48746	21	0	11	10	23
ASE_00408	-	0.70	0.72	0.68	51	32310	30	4	20	6	20
ASE_00409	-	0.48	0.46	0.50	38	40965	39	4	34	1	45
ASE_00411	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	41	49376	45	5	33	7	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.53	48	58220	47	5	38	4	57
ASE_00413	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.63	53	44467	33	10	21	2	28
ASE_00414	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	43	46273	51	2	42	7	52
ASE_00415	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.66	67	54845	36	6	28	2	36
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77304	41	1	31	9	42
ASE_00417	RNaseP_arch links to Rfam database...	0.36	0.37	0.35	37	54510	69	9	59	1	63
ASE_00418	RNaseP_arch links to Rfam database...	0.19	0.20	0.19	15	38702	67	8	56	3	60
ASE_00419	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.85	82	54849	17	5	10	2	21
ASE_00422	RNaseP_bact_a links to Rfam database...	0.78	0.77	0.79	72	46880	26	5	14	7	22
ASE_00423	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.58	63	56845	45	8	37	0	46
ASE_00426	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	45	60977	53	2	51	0	63
ASE_00428	RNaseP_bact_a links to Rfam database...	0.78	0.75	0.81	94	76520	29	3	19	7	31
ASE_00429	-	0.55	0.52	0.60	34	28146	32	1	22	9	32
ASE_00430	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	72	46876	30	5	18	7	25
ASE_00431	RNaseP_bact_a links to Rfam database...	0.65	0.57	0.74	54	46287	29	1	18	10	41
ASE_00434	RNaseP_bact_b links to Rfam database...	0.61	0.59	0.63	65	68162	46	5	33	8	45
ASE_00437	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.49	55	79288	62	0	58	4	80
ASE_00438	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.52	55	65961	50	2	48	0	61
ASE_00441	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.84	83	64162	21	1	15	5	29
ASE_00447	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	83	60277	24	1	17	6	33
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.22	25	64149	93	7	80	6	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.68	75	70765	41	3	33	5	50
CRW_00004	-	0.64	0.63	0.64	83	154160	75	12	35	28	48
CRW_00005	-	0.62	0.63	0.61	83	137938	73	13	41	19	49
CRW_00007	-	0.47	0.49	0.45	65	144848	85	26	52	7	68
CRW_00009	-	0.54	0.56	0.53	77	137930	91	8	60	23	61
CRW_00010	-	0.79	0.79	0.80	99	102707	40	6	19	15	27
CRW_00011	-	0.66	0.68	0.64	94	118195	65	7	45	13	44
CRW_00012	-	0.53	0.54	0.52	76	147006	83	14	57	12	65
CRW_00013	Intron_gpI links to Rfam database...	0.42	0.37	0.47	43	103648	69	4	45	20	72
CRW_00014	-	0.51	0.50	0.52	61	103623	69	12	44	13	62
CRW_00016	Intron_gpI links to Rfam database...	0.51	0.47	0.57	56	77322	56	6	37	13	64
CRW_00017	-	0.53	0.54	0.52	49	92140	70	16	30	24	42
CRW_00018	-	0.62	0.60	0.64	72	182598	89	7	33	49	49
CRW_00019	-	0.73	0.74	0.73	101	127626	62	4	34	24	36
CRW_00423	-	0.22	0.20	0.24	37	242401	131	19	99	13	152
CRW_00429	-	0.18	0.16	0.19	38	306736	165	31	131	3	195
CRW_00605	-	0.72	0.71	0.74	50	183853	120	1	17	102	20
CRW_00608	-	0.74	0.70	0.79	55	35708	25	0	15	10	24
CRW_00610	Intron_gpI links to Rfam database...	0.46	0.46	0.47	37	36237	41	7	34	0	44
CRW_00611	-	0.69	0.67	0.72	50	31306	27	0	19	8	25
CRW_00612	-	0.64	0.61	0.66	57	270394	174	1	28	145	36
CRW_00613	Intron_gpI links to Rfam database...	0.85	0.82	0.89	64	34908	16	0	8	8	14
CRW_00614	Intron_gpI links to Rfam database...	0.14	0.16	0.12	9	121696	125	18	48	59	48
CRW_00618	Intron_gpI links to Rfam database...	0.19	0.20	0.19	12	56217	69	7	44	18	49
CRW_00619	Intron_gpI links to Rfam database...	0.36	0.37	0.35	27	164947	145	7	44	94	46
CRW_00620	Intron_gpI links to Rfam database...	0.18	0.21	0.15	13	150890	150	18	54	78	50
CRW_00621	Intron_gpI links to Rfam database...	0.38	0.35	0.42	25	153121	125	6	29	90	46
CRW_00623	Intron_gpI links to Rfam database...	0.32	0.29	0.35	24	129727	109	5	39	65	59
CRW_00626	-	0.55	0.59	0.52	61	100907	72	19	38	15	43
CRW_00629	-	0.41	0.41	0.41	50	91256	75	13	59	3	72
CRW_00632	-	0.61	0.59	0.63	76	82907	51	4	41	6	52
CRW_00633	Intron_gpI links to Rfam database...	0.62	0.57	0.67	60	63457	32	8	21	3	46
CRW_00634	Intron_gpI links to Rfam database...	0.48	0.47	0.49	44	64531	49	9	36	4	50
CRW_00635	-	0.38	0.38	0.38	52	109142	93	11	73	9	85
CRW_00636	-	0.47	0.46	0.48	66	114823	76	10	61	5	77
CRW_00637	-	0.42	0.42	0.42	67	133743	102	18	75	9	91
CRW_00639	-	0.63	0.64	0.63	88	126616	58	17	35	6	50
CRW_00641	-	0.72	0.71	0.74	54	39830	24	3	16	5	22
CRW_00642	-	0.52	0.57	0.47	37	47199	50	9	33	8	28
CRW_00643	-	0.39	0.43	0.36	52	123110	99	25	69	5	70
CRW_00645	-	0.81	0.84	0.78	56	35439	25	6	10	9	11
CRW_00646	-	0.54	0.53	0.56	34	34919	33	4	23	6	30
CRW_00648	-	0.57	0.57	0.58	84	137930	71	12	49	10	64
CRW_00649	-	0.76	0.76	0.77	94	204358	108	2	26	80	30
CRW_00650	-	0.54	0.51	0.57	73	112922	61	2	53	6	69
CRW_00651	-	0.46	0.49	0.44	59	99993	78	16	60	2	62
CRW_00652	-	0.45	0.48	0.42	62	132209	102	8	76	18	68
CRW_00653	-	0.89	0.87	0.91	116	94703	14	2	9	3	18
CRW_00654	-	0.68	0.65	0.71	80	78097	38	3	30	5	44
CRW_00655	-	0.75	0.73	0.78	90	89138	31	5	20	6	34
CRW_00656	-	0.59	0.58	0.59	75	90398	58	18	34	6	54
CRW_00657	-	0.76	0.75	0.77	102	105898	38	4	26	8	34
CRW_00658	-	0.48	0.49	0.47	50	74584	62	18	39	5	52
CRW_00659	-	0.50	0.51	0.48	31	32321	42	9	24	9	30
CRW_00660	-	0.51	0.50	0.53	30	22098	27	5	22	0	30
CRW_00661	-	0.07	0.08	0.06	4	24247	61	18	41	2	47
CRW_00662	-	0.39	0.40	0.38	26	28612	49	7	35	7	39
CRW_00663	-	0.00	0.00	0.00	0	26031	76	12	63	1	61
CRW_00664	-	0.20	0.22	0.19	17	53538	75	23	50	2	61
CRW_00665	-	0.11	0.13	0.11	6	23596	58	16	35	7	42
CRW_00666	-	0.51	0.49	0.52	62	96022	67	7	50	10	64
CRW_00668	-	0.49	0.50	0.47	75	163719	99	17	67	15	75
CRW_00669	-	0.40	0.39	0.41	46	97349	68	21	45	2	73
CRW_00670	Intron_gpI links to Rfam database...	0.56	0.58	0.56	69	70001	57	12	43	2	51
CRW_00671	Intron_gpI links to Rfam database...	0.80	0.76	0.85	89	62730	20	1	15	4	28
CRW_00672	Intron_gpI links to Rfam database...	0.78	0.77	0.78	86	72280	32	6	18	8	25
CRW_00673	-	0.60	0.62	0.58	65	100015	60	16	32	12	40
CRW_00674	Intron_gpI links to Rfam database...	0.63	0.61	0.64	76	83318	45	8	34	3	48
CRW_00676	Intron_gpI links to Rfam database...	0.60	0.60	0.60	69	93413	64	12	34	18	46
CRW_00677	-	0.55	0.56	0.54	59	71900	56	12	39	5	46
CRW_00679	-	0.34	0.36	0.33	38	76522	79	14	62	3	69
CRW_00681	-	0.55	0.61	0.50	68	112914	83	25	43	15	44
CRW_00685	-	0.38	0.40	0.37	42	156967	113	13	58	42	64
CRW_00686	-	0.57	0.58	0.57	72	95139	67	7	48	12	53
CRW_00687	-	0.67	0.70	0.65	46	28609	29	8	17	4	20
CRW_00688	-	0.84	0.81	0.87	46	21892	10	0	7	3	11
CRW_00689	-	0.69	0.70	0.68	54	33590	28	10	16	2	23
CRW_00690	-	0.70	0.68	0.72	47	33346	24	4	14	6	22
CRW_00691	-	0.52	0.54	0.51	36	27191	35	2	32	1	31
CRW_00692	Intron_gpI links to Rfam database...	0.33	0.34	0.32	31	68537	80	17	50	13	59
CRW_00693	-	0.55	0.56	0.54	68	89126	69	8	51	10	54
CRW_00694	-	0.69	0.68	0.69	83	85785	47	4	33	10	39
CRW_00699	-	0.63	0.62	0.63	78	91683	47	10	35	2	48
CRW_00700	-	0.69	0.67	0.71	99	180762	74	8	32	34	48
CRW_00703	-	0.60	0.55	0.65	36	40415	27	3	16	8	30
CRW_00714	-	0.51	0.50	0.51	54	186249	114	10	42	62	53
CRW_00715	-	0.81	0.80	0.81	83	69276	23	7	12	4	21
CRW_00716	-	0.71	0.74	0.69	66	193657	96	7	23	66	23
CRW_00717	-	0.67	0.61	0.73	90	153612	50	7	26	17	58
CRW_00718	-	0.71	0.69	0.72	132	189853	66	2	49	15	59
CRW_00719	-	0.56	0.53	0.59	48	230100	140	8	25	107	43
CRW_00720	-	0.10	0.11	0.10	10	208234	162	8	83	71	81
CRW_00721	-	0.60	0.63	0.57	43	58577	59	10	23	26	25
CRW_00764	-	0.10	0.10	0.10	20	252922	181	34	140	7	176
CRW_00775	-	0.13	0.13	0.13	27	314613	183	48	133	2	185
CRW_00815	-	0.72	0.72	0.73	113	159740	54	11	31	12	45
CRW_00816	-	0.40	0.41	0.39	53	143779	104	9	75	20	76
CRW_00820	-	0.70	0.67	0.73	97	136371	57	2	33	22	48
PDB_00072	-	0.57	0.58	0.56	121	148025	94	10	84	0	89
PDB_00078	-	0.71	0.68	0.74	78	49665	27	5	22	0	37
PDB_00079	-	0.51	0.49	0.53	69	121641	84	10	51	23	73
PDB_00278	-	0.10	0.10	0.11	7	24912	57	2	55	0	65
PDB_00403	-	0.53	0.50	0.56	77	124612	70	13	48	9	76
PDB_00423	-	0.23	0.23	0.23	17	26723	56	6	50	0	57
PDB_00701	-	0.10	0.10	0.10	11	45344	96	9	87	0	98
PDB_00747	-	0.76	0.66	0.88	53	24471	8	1	6	1	27
PDB_00827	Intron_gpI links to Rfam database...	0.77	0.65	0.91	53	26970	7	0	5	2	28
PDB_00917	-	0.49	0.46	0.52	44	35161	47	3	37	7	51
PDB_00919	RNaseP_bact_a links to Rfam database...	0.53	0.48	0.58	49	44169	39	3	32	4	54
PDB_01129	-	0.42	0.44	0.40	31	35433	51	21	26	4	40
PDB_01157	-	0.33	0.31	0.35	30	50001	55	9	46	0	68
PDB_01166	-	0.54	0.50	0.57	107	181918	87	18	63	6	105
RFA_00597	Telomerase-vert links to Rfam database...	0.24	0.26	0.23	28	97782	106	20	73	13	81
RFA_00598	Telomerase-vert links to Rfam database...	0.66	0.63	0.68	64	84572	59	3	27	29	37
RFA_00599	Telomerase-vert links to Rfam database...	0.72	0.72	0.71	80	101363	56	10	22	24	31
RFA_00600	Telomerase-vert links to Rfam database...	0.62	0.69	0.55	69	120170	89	30	26	33	31
RFA_00601	Telomerase-vert links to Rfam database...	0.49	0.52	0.46	59	99108	82	28	40	14	55
RFA_00602	Telomerase-vert links to Rfam database...	0.66	0.68	0.64	79	101352	64	17	27	20	37
TMR_00007	tmRNA links to Rfam database...	0.41	0.38	0.45	41	61684	56	8	43	5	67
TMR_00008	tmRNA links to Rfam database...	0.53	0.51	0.55	54	65968	51	12	32	7	52
TMR_00010	tmRNA links to Rfam database...	0.25	0.25	0.25	24	57874	76	8	64	4	72
TMR_00012	tmRNA links to Rfam database...	0.41	0.43	0.39	35	64531	70	19	35	16	46
TMR_00014	tmRNA links to Rfam database...	0.60	0.58	0.63	64	68533	48	13	25	10	46
TMR_00017	tmRNA links to Rfam database...	0.51	0.49	0.53	50	67067	50	10	34	6	52
TMR_00018	tmRNA links to Rfam database...	0.37	0.37	0.37	34	64527	63	11	48	4	58
TMR_00028	tmRNA links to Rfam database...	0.40	0.40	0.40	39	62738	61	8	50	3	58
TMR_00030	tmRNA links to Rfam database...	0.29	0.29	0.30	32	75747	81	12	64	5	79
TMR_00034	tmRNA links to Rfam database...	0.63	0.61	0.65	67	59928	43	7	29	7	43
TMR_00035	tmRNA links to Rfam database...	0.40	0.43	0.38	42	67784	72	25	45	2	56
TMR_00036	tmRNA links to Rfam database...	0.55	0.54	0.56	55	90427	69	13	30	26	46
TMR_00038	tmRNA links to Rfam database...	0.22	0.21	0.23	23	71154	80	9	67	4	87
TMR_00042	tmRNA links to Rfam database...	0.35	0.35	0.36	34	62740	64	3	58	3	64
TMR_00046	tmRNA links to Rfam database...	0.28	0.28	0.28	27	62740	72	11	57	4	69
TMR_00047	tmRNA links to Rfam database...	0.30	0.33	0.27	19	48446	67	15	36	16	38
TMR_00048	tmRNA links to Rfam database...	0.23	0.24	0.23	23	64880	83	15	62	6	72
TMR_00049	tmRNA links to Rfam database...	0.57	0.59	0.56	51	63099	53	10	30	13	36
TMR_00051	tmRNA links to Rfam database...	0.74	0.68	0.80	64	65623	37	3	13	21	30
TMR_00055	tmRNA links to Rfam database...	0.25	0.26	0.24	30	78878	95	21	74	0	84
TMR_00057	tmRNA links to Rfam database...	0.17	0.20	0.15	16	73810	106	24	70	12	63
TMR_00061	tmRNA links to Rfam database...	0.30	0.29	0.30	29	59589	76	9	58	9	70
TMR_00062	tmRNA links to Rfam database...	0.58	0.56	0.60	58	78509	53	7	32	14	46
TMR_00064	tmRNA links to Rfam database...	0.50	0.49	0.51	50	76930	48	22	26	0	53
TMR_00065	tmRNA links to Rfam database...	0.53	0.52	0.54	55	76534	48	13	34	1	51
TMR_00067	tmRNA links to Rfam database...	0.39	0.39	0.39	45	82099	71	10	61	0	69
TMR_00073	tmRNA links to Rfam database...	0.58	0.50	0.67	59	65615	30	4	25	1	58
TMR_00076	tmRNA links to Rfam database...	0.39	0.40	0.38	40	70770	74	16	50	8	60
TMR_00080	tmRNA links to Rfam database...	0.41	0.40	0.42	38	70409	53	14	39	0	58
TMR_00081	tmRNA links to Rfam database...	0.55	0.51	0.59	54	67070	38	10	27	1	52
TMR_00082	tmRNA links to Rfam database...	0.70	0.68	0.71	65	67805	31	8	18	5	31
TMR_00083	tmRNA links to Rfam database...	0.47	0.46	0.48	48	68164	60	13	40	7	57
TMR_00092	tmRNA links to Rfam database...	0.39	0.42	0.37	42	67413	77	17	56	4	59
TMR_00093	tmRNA links to Rfam database...	0.38	0.37	0.40	38	64165	65	13	45	7	64
TMR_00096	tmRNA links to Rfam database...	0.50	0.48	0.52	48	64887	55	11	34	10	52
TMR_00101	tmRNA links to Rfam database...	0.42	0.39	0.45	42	64167	61	11	41	9	65
TMR_00102	tmRNA links to Rfam database...	0.24	0.25	0.23	25	64154	85	14	68	3	76
TMR_00103	tmRNA links to Rfam database...	0.56	0.57	0.55	62	64149	54	11	39	4	46
TMR_00104	-	0.09	0.10	0.08	7	66710	83	25	53	5	63
TMR_00106	tmRNA links to Rfam database...	0.40	0.39	0.41	47	89985	72	13	55	4	73
TMR_00109	tmRNA links to Rfam database...	0.55	0.52	0.59	63	88303	48	8	36	4	59
TMR_00111	tmRNA links to Rfam database...	0.40	0.41	0.39	50	90397	81	18	60	3	72
TMR_00116	tmRNA links to Rfam database...	0.77	0.72	0.82	75	64888	31	5	12	14	29
TMR_00117	tmRNA links to Rfam database...	0.68	0.67	0.69	79	80086	44	6	29	9	39
TMR_00118	tmRNA links to Rfam database...	0.47	0.47	0.48	56	81290	67	6	54	7	64
TMR_00119	tmRNA links to Rfam database...	0.32	0.32	0.32	33	71906	75	9	62	4	71
TMR_00123	tmRNA links to Rfam database...	0.40	0.39	0.41	39	66335	61	11	45	5	62
TMR_00124	tmRNA links to Rfam database...	0.60	0.58	0.61	57	70407	50	11	25	14	41
TMR_00125	tmRNA links to Rfam database...	0.39	0.39	0.39	39	64161	65	12	49	4	60
TMR_00127	tmRNA links to Rfam database...	0.48	0.47	0.48	46	62740	59	4	45	10	51
TMR_00128	tmRNA links to Rfam database...	0.39	0.40	0.40	38	60979	58	17	41	0	58
TMR_00131	tmRNA links to Rfam database...	0.47	0.43	0.51	43	64895	50	3	39	8	56
TMR_00135	tmRNA links to Rfam database...	0.33	0.33	0.33	33	62735	74	15	52	7	66
TMR_00136	tmRNA links to Rfam database...	0.21	0.22	0.21	22	74588	84	18	63	3	79
TMR_00137	tmRNA links to Rfam database...	0.22	0.21	0.22	19	60990	74	9	57	8	70
TMR_00139	tmRNA links to Rfam database...	0.60	0.64	0.56	58	62025	51	19	26	6	33
TMR_00140	tmRNA links to Rfam database...	0.52	0.52	0.52	52	73820	64	4	44	16	48
TMR_00142	tmRNA links to Rfam database...	0.50	0.51	0.50	52	70771	65	10	43	12	50
TMR_00143	tmRNA links to Rfam database...	0.48	0.48	0.48	49	64518	63	9	44	10	54
TMR_00144	tmRNA links to Rfam database...	0.26	0.26	0.25	27	74199	84	17	62	5	76
TMR_00146	tmRNA links to Rfam database...	0.83	0.88	0.79	37	32084	36	6	4	26	5
TMR_00150	tmRNA links to Rfam database...	0.73	0.71	0.75	30	43031	43	1	9	33	12
TMR_00152	tmRNA links to Rfam database...	0.27	0.26	0.28	30	81298	88	12	66	10	85
TMR_00155	tmRNA links to Rfam database...	0.57	0.54	0.61	56	61684	46	5	31	10	48
TMR_00156	tmRNA links to Rfam database...	0.38	0.35	0.41	34	60295	53	5	44	4	63
TMR_00158	tmRNA links to Rfam database...	0.50	0.48	0.53	48	60635	47	6	37	4	51
TMR_00159	tmRNA links to Rfam database...	0.57	0.58	0.57	53	62035	53	10	30	13	39
TMR_00160	tmRNA links to Rfam database...	0.45	0.44	0.45	42	64527	59	14	37	8	53
TMR_00164	tmRNA links to Rfam database...	0.42	0.42	0.42	44	66691	70	7	53	10	62
TMR_00165	tmRNA links to Rfam database...	0.32	0.31	0.33	30	61686	69	8	52	9	67
TMR_00166	tmRNA links to Rfam database...	0.46	0.43	0.51	43	61691	48	6	36	6	58
TMR_00168	tmRNA links to Rfam database...	0.72	0.68	0.76	78	60972	26	0	25	1	36
TMR_00173	tmRNA links to Rfam database...	0.36	0.36	0.36	15	42153	55	10	17	28	27
TMR_00179	tmRNA links to Rfam database...	0.61	0.58	0.64	57	67072	46	6	26	14	41
TMR_00180	tmRNA links to Rfam database...	0.66	0.66	0.66	65	67062	52	6	28	18	34
TMR_00182	tmRNA links to Rfam database...	0.17	0.17	0.17	17	66330	87	12	71	4	85
TMR_00183	tmRNA links to Rfam database...	0.25	0.24	0.25	25	63091	79	5	69	5	78
TMR_00184	tmRNA links to Rfam database...	0.43	0.42	0.43	43	63091	66	3	53	10	59
TMR_00193	tmRNA links to Rfam database...	0.40	0.41	0.40	33	59257	61	9	41	11	47
TMR_00194	tmRNA links to Rfam database...	0.42	0.42	0.43	39	62744	60	10	42	8	54
TMR_00196	tmRNA links to Rfam database...	0.38	0.35	0.41	34	60992	54	8	41	5	63
TMR_00199	tmRNA links to Rfam database...	0.55	0.57	0.54	52	62739	53	18	26	9	40
TMR_00200	-	0.60	0.52	0.68	39	41559	29	2	16	11	36
TMR_00204	tmRNA links to Rfam database...	0.44	0.41	0.47	40	60292	52	20	26	6	57
TMR_00207	tmRNA links to Rfam database...	0.29	0.28	0.30	29	72294	71	7	60	4	74
TMR_00223	tmRNA links to Rfam database...	0.26	0.26	0.26	25	64165	75	16	55	4	70
TMR_00224	tmRNA links to Rfam database...	0.42	0.38	0.46	38	64898	50	4	40	6	63
TMR_00226	tmRNA links to Rfam database...	0.46	0.47	0.46	49	69645	63	10	47	6	56
TMR_00227	tmRNA links to Rfam database...	0.35	0.36	0.34	36	70018	76	11	60	5	65
TMR_00228	tmRNA links to Rfam database...	0.31	0.32	0.30	35	88292	88	20	63	5	73
TMR_00234	tmRNA links to Rfam database...	0.31	0.32	0.31	33	58889	77	12	62	3	69
TMR_00238	tmRNA links to Rfam database...	0.32	0.33	0.32	33	84562	79	13	58	8	68
TMR_00239	tmRNA links to Rfam database...	0.50	0.50	0.49	48	61679	53	8	41	4	48
TMR_00240	tmRNA links to Rfam database...	0.61	0.58	0.64	49	63113	34	6	22	6	36
TMR_00246	-	0.54	0.59	0.50	20	78170	106	4	16	86	14
TMR_00248	tmRNA links to Rfam database...	0.14	0.18	0.11	7	54223	96	23	32	41	31
TMR_00257	tmRNA links to Rfam database...	0.12	0.11	0.12	11	67072	82	7	71	4	87
TMR_00259	tmRNA links to Rfam database...	0.56	0.55	0.58	57	67797	45	10	32	3	46
TMR_00261	tmRNA links to Rfam database...	0.58	0.58	0.57	59	66691	48	13	32	3	42
TMR_00262	tmRNA links to Rfam database...	0.57	0.57	0.58	59	74203	47	17	26	4	45
TMR_00271	tmRNA links to Rfam database...	0.64	0.60	0.67	55	64179	37	6	21	10	36
TMR_00274	tmRNA links to Rfam database...	0.31	0.30	0.31	32	66691	78	12	60	6	73
TMR_00278	tmRNA links to Rfam database...	0.51	0.51	0.51	52	67795	62	5	44	13	50
TMR_00279	tmRNA links to Rfam database...	0.57	0.57	0.56	54	68910	53	7	35	11	40
TMR_00280	tmRNA links to Rfam database...	0.51	0.50	0.51	51	65966	67	3	46	18	50
TMR_00283	tmRNA links to Rfam database...	0.50	0.48	0.53	46	65254	50	2	39	9	50
TMR_00289	tmRNA links to Rfam database...	0.57	0.56	0.58	55	67066	53	5	35	13	43
TMR_00290	tmRNA links to Rfam database...	0.48	0.48	0.48	44	64170	61	2	45	14	48
TMR_00296	tmRNA links to Rfam database...	0.28	0.28	0.28	27	68911	73	16	52	5	71
TMR_00298	tmRNA links to Rfam database...	0.50	0.51	0.49	52	68158	64	10	45	9	49
TMR_00300	tmRNA links to Rfam database...	0.55	0.55	0.55	62	70387	62	11	40	11	50
TMR_00301	tmRNA links to Rfam database...	0.42	0.43	0.41	41	82114	65	16	44	5	55
TMR_00302	tmRNA links to Rfam database...	0.29	0.30	0.28	28	77321	79	25	47	7	66
TMR_00305	tmRNA links to Rfam database...	0.68	0.64	0.72	65	60985	33	8	17	8	37
TMR_00306	tmRNA links to Rfam database...	0.45	0.43	0.46	46	64161	56	12	42	2	60
TMR_00310	tmRNA links to Rfam database...	0.37	0.36	0.38	35	63810	67	11	47	9	63
TMR_00317	tmRNA links to Rfam database...	0.65	0.64	0.66	65	68166	40	10	24	6	37
TMR_00331	tmRNA links to Rfam database...	0.68	0.72	0.65	59	66704	43	8	24	11	23
TMR_00332	tmRNA links to Rfam database...	0.49	0.43	0.54	43	67082	41	7	29	5	56
TMR_00334	tmRNA links to Rfam database...	0.68	0.62	0.74	63	66710	33	4	18	11	38
TMR_00337	tmRNA links to Rfam database...	0.55	0.52	0.58	62	82921	49	12	33	4	57
TMR_00340	tmRNA links to Rfam database...	0.52	0.52	0.52	42	64180	55	9	30	16	39
TMR_00341	tmRNA links to Rfam database...	0.35	0.37	0.33	34	63088	71	16	52	3	58
TMR_00343	tmRNA links to Rfam database...	0.48	0.44	0.53	46	64893	50	4	37	9	59
TMR_00345	tmRNA links to Rfam database...	0.66	0.64	0.67	67	63803	41	6	27	8	37
TMR_00346	tmRNA links to Rfam database...	0.26	0.26	0.27	24	64172	72	13	52	7	70
TMR_00348	tmRNA links to Rfam database...	0.25	0.24	0.27	24	77332	82	10	55	17	75
TMR_00352	tmRNA links to Rfam database...	0.36	0.40	0.32	30	95172	97	18	46	33	45
TMR_00353	tmRNA links to Rfam database...	0.44	0.47	0.42	49	84138	81	20	48	13	56
TMR_00357	tmRNA links to Rfam database...	0.40	0.37	0.44	34	82951	59	14	29	16	58
TMR_00358	tmRNA links to Rfam database...	0.47	0.46	0.47	46	74980	56	27	25	4	53
TMR_00361	-	0.29	0.33	0.26	24	93436	86	20	48	18	48
TMR_00366	tmRNA links to Rfam database...	0.51	0.51	0.52	51	67798	58	12	35	11	49
TMR_00372	tmRNA links to Rfam database...	0.61	0.61	0.61	59	70404	54	6	31	17	37
TMR_00374	tmRNA links to Rfam database...	0.27	0.26	0.29	24	81727	74	10	49	15	68
TMR_00375	tmRNA links to Rfam database...	0.53	0.52	0.54	51	73441	51	11	33	7	47
TMR_00376	tmRNA links to Rfam database...	0.69	0.67	0.70	64	74600	45	13	14	18	31
TMR_00378	tmRNA links to Rfam database...	0.26	0.25	0.28	24	67810	73	14	48	11	73
TMR_00383	tmRNA links to Rfam database...	0.41	0.41	0.41	41	66695	67	12	47	8	59
TMR_00384	tmRNA links to Rfam database...	0.30	0.29	0.31	31	65604	75	3	65	7	77
TMR_00393	tmRNA links to Rfam database...	0.60	0.62	0.58	33	53244	54	6	18	30	20
TMR_00395	tmRNA links to Rfam database...	0.51	0.49	0.54	53	64522	49	6	39	4	56
TMR_00398	tmRNA links to Rfam database...	0.45	0.43	0.47	46	65244	55	2	49	4	60
TMR_00399	tmRNA links to Rfam database...	0.35	0.34	0.36	32	64892	62	12	44	6	62
TMR_00404	tmRNA links to Rfam database...	0.37	0.40	0.35	37	67422	80	26	43	11	55
TMR_00408	tmRNA links to Rfam database...	0.58	0.60	0.56	53	65972	55	13	28	14	35
TMR_00409	tmRNA links to Rfam database...	0.85	0.85	0.85	39	68589	65	1	6	58	7
TMR_00411	tmRNA links to Rfam database...	0.66	0.67	0.66	58	60987	41	12	18	11	29
TMR_00415	tmRNA links to Rfam database...	0.44	0.44	0.45	44	67064	56	8	45	3	57
TMR_00419	tmRNA links to Rfam database...	0.56	0.51	0.61	57	81717	54	6	30	18	54
TMR_00422	tmRNA links to Rfam database...	0.51	0.52	0.51	48	67801	60	9	38	13	44
TMR_00423	tmRNA links to Rfam database...	0.08	0.10	0.08	7	63810	95	19	67	9	66
TMR_00427	tmRNA links to Rfam database...	0.34	0.32	0.36	31	67441	61	13	43	5	66
TMR_00429	tmRNA links to Rfam database...	0.56	0.52	0.59	57	74595	48	7	32	9	52
TMR_00430	tmRNA links to Rfam database...	0.27	0.27	0.27	29	82513	79	17	62	0	80
TMR_00431	tmRNA links to Rfam database...	0.68	0.69	0.68	38	51947	65	5	13	47	17
TMR_00432	tmRNA links to Rfam database...	0.38	0.38	0.38	40	79694	73	11	55	7	64
TMR_00433	tmRNA links to Rfam database...	0.50	0.48	0.52	51	80102	48	5	42	1	55
TMR_00439	tmRNA links to Rfam database...	0.48	0.50	0.46	51	68524	70	21	39	10	50
TMR_00441	tmRNA links to Rfam database...	0.11	0.12	0.11	10	62033	94	24	61	9	73
TMR_00443	tmRNA links to Rfam database...	0.54	0.51	0.57	53	67068	47	11	29	7	51
TMR_00448	tmRNA links to Rfam database...	0.34	0.33	0.36	30	62045	59	4	49	6	62
TMR_00451	tmRNA links to Rfam database...	0.18	0.19	0.18	17	63449	84	20	60	4	72
TMR_00457	tmRNA links to Rfam database...	0.40	0.38	0.42	39	78513	58	15	39	4	63
TMR_00458	tmRNA links to Rfam database...	0.46	0.46	0.46	43	63453	57	9	41	7	50
TMR_00460	tmRNA links to Rfam database...	0.46	0.43	0.49	46	79307	57	11	37	9	60
TMR_00465	tmRNA links to Rfam database...	0.26	0.28	0.25	26	64159	80	27	49	4	68
TMR_00469	tmRNA links to Rfam database...	0.53	0.53	0.52	53	64519	52	17	31	4	47
TMR_00472	tmRNA links to Rfam database...	0.42	0.40	0.44	39	64532	60	8	41	11	58
TMR_00478	tmRNA links to Rfam database...	0.19	0.20	0.17	20	71895	100	19	76	5	79
TMR_00498	tmRNA links to Rfam database...	0.33	0.35	0.32	35	68896	84	16	59	9	64
TMR_00499	tmRNA links to Rfam database...	0.21	0.21	0.20	21	64517	89	8	74	7	78
TMR_00501	tmRNA links to Rfam database...	0.44	0.46	0.43	42	62383	58	12	44	2	50
TMR_00502	tmRNA links to Rfam database...	0.22	0.24	0.21	22	75359	94	18	67	9	71
TMR_00503	tmRNA links to Rfam database...	0.43	0.41	0.45	46	67793	66	4	53	9	65
TMR_00519	tmRNA links to Rfam database...	0.39	0.39	0.40	37	63098	66	12	43	11	58
TMR_00520	tmRNA links to Rfam database...	0.52	0.52	0.53	51	63094	55	14	31	10	48
TMR_00522	tmRNA links to Rfam database...	0.39	0.39	0.40	38	63095	66	13	44	9	59
TMR_00528	tmRNA links to Rfam database...	0.30	0.29	0.32	28	63102	70	16	44	10	69
TMR_00540	tmRNA links to Rfam database...	0.44	0.41	0.47	43	73444	60	11	38	11	61
TMR_00541	tmRNA links to Rfam database...	0.40	0.40	0.40	42	61671	72	3	60	9	63
TMR_00544	tmRNA links to Rfam database...	0.54	0.52	0.55	56	89575	55	8	37	10	52
TMR_00547	tmRNA links to Rfam database...	0.39	0.39	0.39	39	65240	64	6	56	2	61
TMR_00553	tmRNA links to Rfam database...	0.40	0.38	0.42	31	48131	49	5	38	6	50
TMR_00559	tmRNA links to Rfam database...	0.39	0.38	0.40	38	62386	61	10	47	4	63
TMR_00560	tmRNA links to Rfam database...	0.57	0.54	0.60	53	60987	46	4	31	11	45
TMR_00562	tmRNA links to Rfam database...	0.32	0.31	0.33	32	72673	72	11	55	6	70
TMR_00563	tmRNA links to Rfam database...	0.64	0.61	0.67	63	75372	43	9	22	12	40
TMR_00566	tmRNA links to Rfam database...	0.67	0.60	0.74	60	60645	32	2	19	11	40
TMR_00568	tmRNA links to Rfam database...	0.36	0.34	0.38	34	60636	62	4	52	6	65
TMR_00570	tmRNA links to Rfam database...	0.57	0.55	0.60	53	60289	48	5	31	12	44
TMR_00571	tmRNA links to Rfam database...	0.66	0.61	0.71	60	60642	38	2	22	14	39
TMR_00576	tmRNA links to Rfam database...	0.62	0.61	0.63	62	60279	47	13	24	10	40
TMR_00579	tmRNA links to Rfam database...	0.25	0.28	0.22	25	80488	98	18	70	10	65
TMR_00580	tmRNA links to Rfam database...	0.68	0.64	0.72	64	60637	36	2	23	11	36
TMR_00581	tmRNA links to Rfam database...	0.24	0.21	0.26	21	62401	64	2	57	5	77
TMR_00584	tmRNA links to Rfam database...	0.59	0.57	0.61	55	60985	47	3	32	12	42
TMR_00586	tmRNA links to Rfam database...	0.50	0.49	0.51	48	60980	57	8	39	10	49
TMR_00587	tmRNA links to Rfam database...	0.60	0.57	0.63	57	61334	40	6	28	6	43
TMR_00588	tmRNA links to Rfam database...	0.26	0.27	0.25	27	77312	89	22	60	7	74
TMR_00594	tmRNA links to Rfam database...	0.14	0.14	0.13	15	79285	106	24	77	5	89
TMR_00596	tmRNA links to Rfam database...	0.30	0.28	0.32	27	78125	73	12	46	15	68
TMR_00599	tmRNA links to Rfam database...	0.24	0.28	0.22	20	63097	79	26	47	6	52
TMR_00600	tmRNA links to Rfam database...	0.33	0.33	0.32	38	79682	82	12	68	2	77
TMR_00601	tmRNA links to Rfam database...	0.31	0.29	0.33	12	58960	76	7	17	52	30
TMR_00603	tmRNA links to Rfam database...	0.67	0.60	0.74	26	60343	67	1	8	58	17
TMR_00604	tmRNA links to Rfam database...	0.65	0.63	0.67	71	62729	35	4	31	0	41
TMR_00605	tmRNA links to Rfam database...	0.54	0.52	0.57	56	74207	47	14	28	5	52
TMR_00606	tmRNA links to Rfam database...	0.42	0.41	0.44	44	68905	64	5	52	7	63
TMR_00609	tmRNA links to Rfam database...	0.70	0.67	0.72	76	63441	39	2	27	10	37
TMR_00610	tmRNA links to Rfam database...	0.62	0.63	0.63	65	62024	51	7	32	12	39
TMR_00611	tmRNA links to Rfam database...	0.44	0.45	0.43	46	61317	62	13	49	0	56
TMR_00612	tmRNA links to Rfam database...	0.36	0.37	0.35	38	60617	75	9	62	4	66
TMR_00614	tmRNA links to Rfam database...	0.72	0.69	0.75	72	60979	33	2	22	9	32
TMR_00615	tmRNA links to Rfam database...	0.68	0.63	0.73	60	63821	33	8	14	11	36
TMR_00616	tmRNA links to Rfam database...	0.41	0.40	0.41	40	67064	62	12	45	5	59
TMR_00617	tmRNA links to Rfam database...	0.46	0.50	0.43	29	34648	49	13	26	10	29
TMR_00623	tmRNA links to Rfam database...	0.44	0.44	0.45	47	61321	63	2	55	6	61
TMR_00624	tmRNA links to Rfam database...	0.71	0.69	0.73	75	62378	40	6	22	12	33
TMR_00625	tmRNA links to Rfam database...	0.41	0.42	0.39	45	78888	79	19	51	9	61
TMR_00626	tmRNA links to Rfam database...	0.23	0.23	0.23	25	67787	88	12	72	4	84
TMR_00680	tmRNA links to Rfam database...	0.36	0.36	0.35	36	67793	75	11	56	8	63
TMR_00681	tmRNA links to Rfam database...	0.38	0.36	0.39	35	65977	62	8	46	8	62
TMR_00683	tmRNA links to Rfam database...	0.17	0.18	0.15	18	82911	108	17	82	9	82
TMR_00686	tmRNA links to Rfam database...	0.44	0.45	0.42	49	71137	78	16	51	11	59
TMR_00687	tmRNA links to Rfam database...	0.56	0.53	0.59	59	71531	51	11	30	10	52
TMR_00696	tmRNA links to Rfam database...	0.16	0.16	0.17	18	84971	101	12	77	12	96
TMR_00698	tmRNA links to Rfam database...	0.47	0.45	0.50	47	63096	50	11	36	3	57
TMR_00699	tmRNA links to Rfam database...	0.49	0.44	0.55	45	67079	42	4	33	5	57
TMR_00702	tmRNA links to Rfam database...	0.39	0.36	0.42	36	67075	55	12	38	5	64
TMR_00703	tmRNA links to Rfam database...	0.50	0.49	0.52	49	67433	51	6	40	5	50
TMR_00706	tmRNA links to Rfam database...	0.59	0.56	0.62	58	66336	39	7	29	3	45
TMR_00711	tmRNA links to Rfam database...	0.61	0.61	0.60	60	67796	45	13	27	5	38
TMR_00712	tmRNA links to Rfam database...	0.30	0.31	0.30	34	78491	84	13	68	3	75
TMR_00716	tmRNA links to Rfam database...	0.32	0.31	0.33	31	62741	67	12	51	4	69

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of ContextFold - scored higher in this pairwise comparison

1. Total counts & total scores for ContextFold

2. Individual counts for ContextFold [ download as .csv ]

Performance of MaxExpect - scored lower in this pairwise comparison

1. Total counts & total scores for MaxExpect

2. Individual counts for MaxExpect [ download as .csv ]