CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	ContextFold		McQFold
MCC	0.718	>	0.450
Average MCC ± 95% Confidence Intervals	0.712 ± 0.015	>	0.452 ± 0.013
Sensitivity	0.677	>	0.441
Positive Predictive Value	0.763	>	0.461
Total TP	42560	>	27724
Total TN	43343529	>	43339185
Total FP	16963	<	36803
Total FP CONTRA	2830	<	5520
Total FP INCONS	10418	<	26908
Total FP COMP	3715	<	4375
Total FN	20315	<	35151
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of ContextFold and McQFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for ContextFold and McQFold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for ContextFold and McQFold).
Comparison of average Matthews Correlation Coefficients (MCCs) for ContextFold and McQFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for ContextFold and McQFold).

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Performance of ContextFold - scored higher in this pairwise comparison

1. Total counts & total scores for ContextFold

Total Base Pair Counts
Total TP	42560
Total TN	43343529
Total FP	16963
Total FP CONTRA	2830
Total FP INCONS	10418
Total FP COMP	3715
Total FN	20315

Total Scores
MCC	0.718
Average MCC ± 95% Confidence Intervals	0.712 ± 0.015
Sensitivity	0.677
Positive Predictive Value	0.763
Nr of predictions	610

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2. Individual counts for ContextFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.88	0.83	0.94	62	34125	7	0	4	3	13
ASE_00002	RNaseP_arch links to Rfam database...	0.64	0.60	0.69	44	35447	25	4	16	5	29
ASE_00004	RNaseP_bact_a links to Rfam database...	0.88	0.86	0.90	83	47803	9	1	8	0	14
ASE_00005	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.98	99	57869	2	0	2	0	18
ASE_00006	RNaseP_bact_a links to Rfam database...	0.89	0.87	0.90	81	47496	9	1	8	0	12
ASE_00007	RNaseP_bact_a links to Rfam database...	0.91	0.86	0.97	95	59587	3	0	3	0	15
ASE_00009	RNaseP_arch links to Rfam database...	0.84	0.79	0.90	53	26047	6	0	6	0	14
ASE_00012	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.75	78	73816	29	3	23	3	45
ASE_00014	RNaseP_arch links to Rfam database...	0.70	0.65	0.75	69	54193	26	1	22	3	37
ASE_00017	RNaseP_nuc links to Rfam database...	0.13	0.13	0.13	8	50979	71	12	41	18	56
ASE_00018	RNaseP_bact_a links to Rfam database...	0.88	0.84	0.93	112	80480	9	0	9	0	22
ASE_00020	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	89	73810	21	1	20	0	37
ASE_00021	RNaseP_bact_a links to Rfam database...	0.87	0.79	0.95	126	104064	10	0	6	4	34
ASE_00022	RNaseP_bact_b links to Rfam database...	0.89	0.80	1.00	99	82929	5	0	0	5	25
ASE_00023	RNaseP_bact_a links to Rfam database...	0.88	0.84	0.91	107	84138	13	0	10	3	20
ASE_00025	RNaseP_nuc links to Rfam database...	0.10	0.10	0.10	7	78537	101	11	51	39	64
ASE_00026	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	79	59597	13	1	8	4	31
ASE_00028	RNaseP_bact_b links to Rfam database...	0.86	0.76	0.96	96	84566	8	1	3	4	30
ASE_00029	RNaseP_bact_a links to Rfam database...	0.88	0.84	0.93	102	82918	9	2	6	1	20
ASE_00030	RNaseP_bact_a links to Rfam database...	0.88	0.81	0.95	117	85368	6	2	4	0	28
ASE_00031	RNaseP_bact_a links to Rfam database...	0.95	0.90	1.00	114	86622	5	0	0	5	12
ASE_00032	RNaseP_bact_a links to Rfam database...	0.93	0.87	1.00	103	80097	3	0	0	3	15
ASE_00033	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.88	81	64888	11	0	11	0	40
ASE_00035	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.86	77	70410	15	1	12	2	41
ASE_00036	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.92	98	75749	9	1	7	1	34
ASE_00037	RNaseP_bact_a links to Rfam database...	0.88	0.80	0.98	88	59250	2	0	2	0	22
ASE_00038	RNaseP_bact_a links to Rfam database...	0.94	0.89	1.00	90	53538	0	0	0	0	11
ASE_00040	RNaseP_bact_a links to Rfam database...	0.88	0.81	0.96	108	78891	7	0	4	3	25
ASE_00041	RNaseP_bact_a links to Rfam database...	0.88	0.81	0.97	87	57540	5	0	3	2	21
ASE_00042	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.91	108	89981	14	1	10	3	37
ASE_00044	RNaseP_bact_a links to Rfam database...	0.92	0.87	0.97	91	54521	6	0	3	3	14
ASE_00046	RNaseP_bact_a links to Rfam database...	0.81	0.69	0.96	71	50329	3	0	3	0	32
ASE_00047	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.84	93	74194	18	0	18	0	37
ASE_00052	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	68	61343	15	0	14	1	44
ASE_00053	RNaseP_bact_a links to Rfam database...	0.88	0.82	0.94	109	79285	7	4	3	0	24
ASE_00056	-	0.92	0.85	1.00	61	30815	9	0	0	9	11
ASE_00057	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.85	100	82097	20	5	13	2	34
ASE_00064	RNaseP_bact_a links to Rfam database...	0.95	0.91	1.00	81	45370	1	0	0	1	8
ASE_00066	RNaseP_bact_a links to Rfam database...	0.87	0.79	0.95	103	72282	5	0	5	0	27
ASE_00068	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	64	37604	7	0	7	0	21
ASE_00069	RNaseP_bact_a links to Rfam database...	0.91	0.84	0.99	117	82910	2	0	1	1	23
ASE_00074	RNaseP_bact_a links to Rfam database...	0.95	0.90	1.00	107	67789	0	0	0	0	12
ASE_00075	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.94	120	108683	12	1	7	4	42
ASE_00076	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.89	92	68162	11	0	11	0	26
ASE_00077	RNaseP_bact_a links to Rfam database...	0.88	0.84	0.94	72	45073	5	1	4	0	14
ASE_00078	RNaseP_bact_a links to Rfam database...	0.88	0.88	0.89	73	42989	10	3	6	1	10
ASE_00079	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	68	55522	21	2	19	0	32
ASE_00080	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.84	91	71523	21	0	17	4	32
ASE_00081	RNaseP_bact_a links to Rfam database...	0.92	0.86	1.00	83	49687	0	0	0	0	14
ASE_00082	RNaseP_bact_a links to Rfam database...	0.93	0.86	1.00	100	70400	8	0	0	8	16
ASE_00083	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.83	85	62379	20	0	17	3	25
ASE_00084	RNaseP_bact_a links to Rfam database...	0.93	0.89	0.97	88	53537	3	1	2	0	11
ASE_00087	RNaseP_bact_a links to Rfam database...	0.89	0.81	0.98	116	88292	2	0	2	0	28
ASE_00089	-	0.80	0.73	0.87	58	31308	9	1	8	0	21
ASE_00090	RNaseP_bact_a links to Rfam database...	0.84	0.83	0.86	84	55513	14	1	13	0	17
ASE_00092	RNaseP_bact_a links to Rfam database...	0.94	0.91	0.97	103	63440	3	1	2	0	10
ASE_00096	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.85	85	63446	15	0	15	0	30
ASE_00099	RNaseP_bact_a links to Rfam database...	0.92	0.85	1.00	102	64518	0	0	0	0	18
ASE_00100	RNaseP_nuc links to Rfam database...	0.25	0.25	0.25	19	82140	97	12	44	41	57
ASE_00102	RNaseP_bact_a links to Rfam database...	0.87	0.79	0.95	131	117717	9	1	6	2	35
ASE_00104	RNaseP_bact_a links to Rfam database...	0.92	0.85	1.00	101	64160	0	0	0	0	18
ASE_00105	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.84	72	64175	14	0	14	0	39
ASE_00107	RNaseP_bact_a links to Rfam database...	0.93	0.87	1.00	111	73042	0	0	0	0	16
ASE_00108	RNaseP_nuc links to Rfam database...	0.23	0.27	0.20	17	46887	76	24	43	9	46
ASE_00111	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	50004	92	24	58	10	57
ASE_00112	RNaseP_bact_a links to Rfam database...	0.95	0.90	1.00	104	75362	3	0	0	3	12
ASE_00115	RNaseP_bact_a links to Rfam database...	0.96	0.93	0.99	94	54520	5	0	1	4	7
ASE_00116	RNaseP_arch links to Rfam database...	0.90	0.85	0.97	56	31568	2	0	2	0	10
ASE_00118	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.85	78	60634	15	1	13	1	24
ASE_00119	RNaseP_bact_a links to Rfam database...	0.89	0.87	0.90	94	62731	10	1	9	0	14
ASE_00120	RNaseP_arch links to Rfam database...	0.82	0.73	0.92	69	46896	7	2	4	1	25
ASE_00121	RNaseP_arch links to Rfam database...	0.85	0.77	0.95	71	45075	5	2	2	1	21
ASE_00122	RNaseP_bact_a links to Rfam database...	0.92	0.86	0.97	76	43287	2	0	2	0	12
ASE_00123	RNaseP_bact_a links to Rfam database...	0.88	0.81	0.96	69	38431	3	0	3	0	16
ASE_00125	RNaseP_bact_a links to Rfam database...	0.92	0.86	0.99	76	39263	1	0	1	0	12
ASE_00126	RNaseP_bact_a links to Rfam database...	0.94	0.89	0.99	73	40396	1	0	1	0	9
ASE_00128	RNaseP_bact_a links to Rfam database...	0.93	0.86	1.00	86	53215	0	0	0	0	14
ASE_00129	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.77	76	62736	23	1	22	0	35
ASE_00131	RNaseP_bact_a links to Rfam database...	0.90	0.82	0.99	70	39269	1	0	1	0	15
ASE_00132	RNaseP_bact_a links to Rfam database...	0.90	0.82	0.99	78	50324	2	0	1	1	17
ASE_00134	RNaseP_bact_a links to Rfam database...	0.92	0.89	0.96	85	50314	4	0	4	0	10
ASE_00135	RNaseP_bact_a links to Rfam database...	0.95	0.91	0.99	99	63090	6	0	1	5	10
ASE_00136	RNaseP_bact_a links to Rfam database...	0.95	0.91	0.99	84	48120	1	0	1	0	8
ASE_00137	RNaseP_bact_a links to Rfam database...	0.91	0.88	0.95	86	48425	5	1	4	0	12
ASE_00138	RNaseP_bact_a links to Rfam database...	0.93	0.89	0.97	72	40396	2	0	2	0	9
ASE_00139	RNaseP_bact_a links to Rfam database...	0.94	0.88	1.00	91	54194	1	0	0	1	13
ASE_00140	RNaseP_bact_a links to Rfam database...	0.91	0.84	0.98	105	70769	2	2	0	0	20
ASE_00142	RNaseP_bact_a links to Rfam database...	0.90	0.83	0.97	101	67057	5	0	3	2	21
ASE_00145	RNaseP_arch links to Rfam database...	0.80	0.78	0.81	87	70018	25	4	16	5	24
ASE_00146	RNaseP_bact_a links to Rfam database...	0.84	0.75	0.94	93	70777	7	1	5	1	31
ASE_00148	RNaseP_arch links to Rfam database...	0.85	0.80	0.90	123	112438	17	2	12	3	31
ASE_00151	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.90	80	51914	9	6	3	0	18
ASE_00153	RNaseP_nuc links to Rfam database...	0.51	0.51	0.51	37	57558	68	6	29	33	36
ASE_00154	RNaseP_arch links to Rfam database...	0.69	0.66	0.72	71	65243	31	3	24	4	36
ASE_00155	RNaseP_arch links to Rfam database...	0.87	0.80	0.94	114	93407	12	0	7	5	28
ASE_00163	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.87	78	53211	16	3	9	4	15
ASE_00165	RNaseP_bact_a links to Rfam database...	0.84	0.80	0.89	81	52884	11	3	7	1	20
ASE_00168	RNaseP_nuc links to Rfam database...	0.26	0.30	0.23	19	60645	73	16	46	11	45
ASE_00169	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.91	85	57198	11	0	8	3	22
ASE_00170	RNaseP_bact_a links to Rfam database...	0.91	0.87	0.95	81	48743	6	0	4	2	12
ASE_00171	RNaseP_bact_a links to Rfam database...	0.86	0.79	0.95	74	48438	4	0	4	0	20
ASE_00172	RNaseP_bact_a links to Rfam database...	0.86	0.83	0.90	88	58898	11	2	8	1	18
ASE_00174	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.97	93	60979	4	0	3	1	16
ASE_00175	RNaseP_bact_a links to Rfam database...	0.94	0.90	0.98	96	59933	3	0	2	1	11
ASE_00176	RNaseP_bact_a links to Rfam database...	0.64	0.56	0.73	62	59946	23	5	18	0	48
ASE_00179	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	64	44181	8	4	4	0	20
ASE_00180	RNaseP_bact_a links to Rfam database...	0.93	0.87	1.00	87	51273	0	0	0	0	13
ASE_00181	RNaseP_bact_a links to Rfam database...	0.93	0.90	0.96	95	57531	4	0	4	0	11
ASE_00182	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.97	116	84135	4	0	4	0	20
ASE_00183	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.85	91	61318	17	0	16	1	22
ASE_00184	RNaseP_bact_a links to Rfam database...	0.96	0.93	0.99	95	54519	2	0	1	1	7
ASE_00185	RNaseP_bact_a links to Rfam database...	0.92	0.87	0.98	111	73423	2	0	2	0	17
ASE_00186	RNaseP_bact_a links to Rfam database...	0.89	0.86	0.93	113	78882	12	1	7	4	19
ASE_00187	RNaseP_arch links to Rfam database...	0.78	0.71	0.85	82	68539	16	2	12	2	33
ASE_00189	RNaseP_bact_b links to Rfam database...	0.91	0.87	0.96	89	63097	6	0	4	2	13
ASE_00190	RNaseP_bact_b links to Rfam database...	0.86	0.81	0.91	73	45371	8	0	7	1	17
ASE_00192	RNaseP_bact_b links to Rfam database...	0.73	0.62	0.86	82	84571	19	1	12	6	51
ASE_00194	RNaseP_bact_b links to Rfam database...	0.79	0.71	0.88	84	73440	17	2	10	5	35
ASE_00195	-	0.68	0.60	0.76	80	86215	28	5	20	3	53
ASE_00196	RNaseP_arch links to Rfam database...	0.78	0.75	0.82	56	31558	14	2	10	2	19
ASE_00197	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.82	106	89123	27	0	24	3	39
ASE_00198	RNaseP_bact_a links to Rfam database...	0.95	0.90	1.00	92	52558	0	0	0	0	10
ASE_00203	RNaseP_bact_a links to Rfam database...	0.94	0.90	0.99	86	46578	1	1	0	0	10
ASE_00204	RNaseP_bact_b links to Rfam database...	0.84	0.72	0.98	81	67813	8	0	2	6	31
ASE_00205	RNaseP_arch links to Rfam database...	0.64	0.61	0.68	55	45975	32	1	25	6	35
ASE_00209	RNaseP_arch links to Rfam database...	0.59	0.55	0.63	48	42995	28	1	27	0	40
ASE_00210	RNaseP_arch links to Rfam database...	0.70	0.69	0.71	45	27198	20	3	15	2	20
ASE_00212	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.90	122	93826	16	1	12	3	26
ASE_00213	RNaseP_arch links to Rfam database...	0.87	0.82	0.93	54	27203	6	0	4	2	12
ASE_00214	RNaseP_bact_a links to Rfam database...	0.95	0.91	0.99	94	56185	6	0	1	5	9
ASE_00215	RNaseP_bact_a links to Rfam database...	0.92	0.85	1.00	84	48432	1	0	0	1	15
ASE_00216	RNaseP_bact_a links to Rfam database...	0.91	0.88	0.94	72	39263	5	3	2	0	10
ASE_00217	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.93	67	40398	10	0	5	5	23
ASE_00221	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.84	80	64525	15	1	14	0	37
ASE_00222	RNaseP_arch links to Rfam database...	0.75	0.69	0.82	108	111969	27	2	22	3	49
ASE_00227	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.71	72	78902	29	2	27	0	61
ASE_00228	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.87	71	46889	12	3	8	1	15
ASE_00229	RNaseP_bact_a links to Rfam database...	0.91	0.87	0.94	76	42405	5	1	4	0	11
ASE_00231	RNaseP_bact_a links to Rfam database...	0.94	0.92	0.97	88	47804	3	1	2	0	8
ASE_00232	RNaseP_bact_a links to Rfam database...	0.96	0.93	1.00	78	38425	0	0	0	0	6
ASE_00234	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	94	75353	19	1	18	0	35
ASE_00237	RNaseP_nuc links to Rfam database...	0.08	0.09	0.07	5	45683	76	18	47	11	51
ASE_00238	RNaseP_bact_a links to Rfam database...	0.94	0.90	0.98	103	64156	2	1	1	0	11
ASE_00240	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.81	68	46581	18	0	16	2	25
ASE_00241	RNaseP_bact_a links to Rfam database...	0.96	0.93	0.99	81	43874	1	0	1	0	6
ASE_00242	RNaseP_bact_a links to Rfam database...	0.92	0.89	0.95	100	60970	5	3	2	0	12
ASE_00246	RNaseP_nuc links to Rfam database...	0.14	0.15	0.13	10	48129	75	18	48	9	57
ASE_00247	RNaseP_nuc links to Rfam database...	0.06	0.06	0.07	4	54226	84	7	48	29	60
ASE_00248	RNaseP_bact_a links to Rfam database...	0.93	0.87	0.99	99	62381	1	0	1	0	15
ASE_00250	RNaseP_bact_a links to Rfam database...	0.88	0.80	0.96	105	78894	7	0	4	3	26
ASE_00252	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	115	115309	20	0	16	4	53
ASE_00254	RNaseP_bact_a links to Rfam database...	0.90	0.85	0.95	70	36782	4	0	4	0	12
ASE_00255	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.89	97	74582	12	1	11	0	33
ASE_00257	RNaseP_bact_a links to Rfam database...	0.96	0.93	1.00	90	50950	0	0	0	0	7
ASE_00259	RNaseP_bact_a links to Rfam database...	0.63	0.54	0.75	65	73066	22	2	20	0	56
ASE_00263	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	102	70389	9	0	9	0	18
ASE_00264	RNaseP_nuc links to Rfam database...	0.87	0.82	0.93	82	49053	12	0	6	6	18
ASE_00267	RNaseP_bact_a links to Rfam database...	0.96	0.92	1.00	81	45069	2	0	0	2	7
ASE_00270	RNaseP_bact_a links to Rfam database...	0.91	0.86	0.96	110	72275	5	1	4	0	18
ASE_00274	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.96	86	55521	4	1	3	0	17
ASE_00277	RNaseP_bact_a links to Rfam database...	0.81	0.78	0.85	71	48121	13	1	12	0	20
ASE_00279	RNaseP_bact_a links to Rfam database...	0.92	0.86	0.98	87	53212	2	0	2	0	14
ASE_00280	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.90	80	51914	9	0	9	0	18
ASE_00281	RNaseP_bact_a links to Rfam database...	0.95	0.91	1.00	80	44471	0	0	0	0	8
ASE_00282	RNaseP_bact_a links to Rfam database...	0.88	0.83	0.95	105	77704	10	0	6	4	22
ASE_00283	RNaseP_bact_a links to Rfam database...	0.90	0.86	0.95	92	61679	5	0	5	0	15
ASE_00284	RNaseP_bact_a links to Rfam database...	0.95	0.91	1.00	98	58213	0	0	0	0	10
ASE_00285	RNaseP_bact_a links to Rfam database...	0.86	0.80	0.92	97	68901	8	0	8	0	25
ASE_00286	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	78	46580	10	0	7	3	14
ASE_00287	RNaseP_bact_a links to Rfam database...	0.93	0.86	1.00	89	54857	0	0	0	0	14
ASE_00288	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.90	63	45986	7	2	5	0	30
ASE_00289	RNaseP_bact_a links to Rfam database...	0.89	0.81	0.98	127	100895	5	1	2	2	30
ASE_00291	-	0.81	0.71	0.92	67	48443	8	0	6	2	27
ASE_00292	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	91	81690	29	0	29	0	47
ASE_00294	RNaseP_bact_a links to Rfam database...	0.90	0.83	0.97	142	114334	8	0	5	3	29
ASE_00295	RNaseP_bact_a links to Rfam database...	0.85	0.76	0.96	99	73817	4	0	4	0	32
ASE_00296	RNaseP_bact_a links to Rfam database...	0.84	0.79	0.90	115	91678	13	1	12	0	30
ASE_00297	RNaseP_bact_a links to Rfam database...	0.87	0.84	0.90	82	52884	10	1	8	1	16
ASE_00298	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	77	67427	24	2	22	0	36
ASE_00299	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.82	71	49368	20	0	16	4	29
ASE_00313	RNaseP_nuc links to Rfam database...	0.62	0.60	0.65	53	62399	41	10	19	12	36
ASE_00316	RNaseP_nuc links to Rfam database...	0.89	0.80	0.99	78	107801	35	1	0	34	20
ASE_00318	RNaseP_bact_b links to Rfam database...	0.76	0.68	0.86	80	80107	19	0	13	6	38
ASE_00327	RNaseP_nuc links to Rfam database...	0.87	0.80	0.96	71	57217	21	2	1	18	18
ASE_00328	RNaseP_bact_b links to Rfam database...	0.91	0.86	0.97	96	72672	9	0	3	6	16
ASE_00330	RNaseP_nuc links to Rfam database...	0.83	0.79	0.88	71	56199	23	0	10	13	19
ASE_00332	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.69	85	81687	39	2	36	1	53
ASE_00335	RNaseP_bact_b links to Rfam database...	0.82	0.74	0.91	86	75372	13	0	8	5	30
ASE_00337	RNaseP_nuc links to Rfam database...	0.59	0.56	0.63	40	39276	35	5	19	11	31
ASE_00338	RNaseP_nuc links to Rfam database...	0.76	0.71	0.81	70	66344	31	2	14	15	28
ASE_00339	RNaseP_bact_a links to Rfam database...	0.95	0.91	1.00	108	80092	7	0	0	7	11
ASE_00340	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.82	64	45978	17	2	12	3	21
ASE_00342	RNaseP_bact_a links to Rfam database...	0.91	0.86	0.96	99	62378	4	0	4	0	16
ASE_00343	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.95	94	83337	12	0	5	7	19
ASE_00346	RNaseP_arch links to Rfam database...	0.61	0.58	0.64	56	48118	32	2	29	1	41
ASE_00353	RNaseP_bact_a links to Rfam database...	0.95	0.92	0.99	98	57871	1	1	0	0	9
ASE_00359	RNaseP_arch links to Rfam database...	0.73	0.69	0.79	55	42708	17	2	13	2	25
ASE_00360	RNaseP_arch links to Rfam database...	0.73	0.65	0.82	42	29352	9	0	9	0	23
ASE_00361	RNaseP_bact_a links to Rfam database...	0.94	0.88	1.00	112	75354	2	0	0	2	15
ASE_00362	RNaseP_bact_a links to Rfam database...	0.88	0.86	0.90	78	48118	9	2	7	0	13
ASE_00363	RNaseP_bact_a links to Rfam database...	0.95	0.91	0.98	86	51272	3	0	2	1	8
ASE_00364	RNaseP_bact_a links to Rfam database...	0.90	0.86	0.95	90	54190	5	0	5	0	15
ASE_00366	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.81	75	58560	18	3	15	0	23
ASE_00367	RNaseP_bact_a links to Rfam database...	0.90	0.84	0.96	72	42996	7	0	3	4	14
ASE_00369	RNaseP_bact_a links to Rfam database...	0.96	0.93	1.00	99	55846	1	0	0	1	8
ASE_00370	RNaseP_bact_a links to Rfam database...	0.94	0.90	0.99	76	41828	1	0	1	0	8
ASE_00372	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	81	51911	12	1	10	1	19
ASE_00374	RNaseP_bact_a links to Rfam database...	0.88	0.88	0.90	77	44764	9	2	7	0	11
ASE_00375	RNaseP_bact_a links to Rfam database...	0.94	0.88	1.00	97	60281	0	0	0	0	13
ASE_00376	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	89	56856	8	0	8	0	16
ASE_00377	RNaseP_bact_a links to Rfam database...	0.95	0.93	0.98	99	57529	2	0	2	0	8
ASE_00379	RNaseP_bact_a links to Rfam database...	0.90	0.87	0.94	77	45974	7	0	5	2	12
ASE_00380	RNaseP_bact_a links to Rfam database...	0.92	0.84	1.00	83	54863	0	0	0	0	16
ASE_00382	RNaseP_bact_a links to Rfam database...	0.96	0.93	0.99	78	41826	1	0	1	0	6
ASE_00383	RNaseP_bact_a links to Rfam database...	0.93	0.87	1.00	91	54524	0	0	0	0	14
ASE_00384	RNaseP_bact_a links to Rfam database...	0.95	0.90	1.00	83	48433	0	0	0	0	9
ASE_00385	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.82	61	41831	13	7	6	0	20
ASE_00386	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.90	78	50316	10	5	4	1	18
ASE_00387	RNaseP_bact_a links to Rfam database...	0.89	0.86	0.93	89	55849	7	0	7	0	15
ASE_00388	RNaseP_bact_a links to Rfam database...	0.94	0.89	1.00	79	45674	0	0	0	0	10
ASE_00390	RNaseP_bact_a links to Rfam database...	0.93	0.89	0.97	76	42117	8	0	2	6	9
ASE_00393	RNaseP_bact_a links to Rfam database...	0.89	0.84	0.94	78	47812	5	0	5	0	15
ASE_00394	RNaseP_bact_a links to Rfam database...	0.96	0.91	1.00	85	46886	0	0	0	0	8
ASE_00395	RNaseP_bact_a links to Rfam database...	0.98	0.95	1.00	80	41536	2	0	0	2	4
ASE_00396	RNaseP_bact_a links to Rfam database...	0.91	0.88	0.95	73	41539	4	0	4	0	10
ASE_00397	RNaseP_bact_a links to Rfam database...	0.94	0.89	0.99	93	54521	1	1	0	0	12
ASE_00398	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.80	68	55860	17	0	17	0	36
ASE_00400	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.91	84	57878	8	0	8	0	22
ASE_00401	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.90	102	76915	11	0	11	0	24
ASE_00402	RNaseP_bact_a links to Rfam database...	0.90	0.87	0.94	74	42407	5	0	5	0	11
ASE_00403	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.90	85	55851	9	0	9	0	22
ASE_00404	RNaseP_bact_a links to Rfam database...	0.90	0.86	0.95	73	42994	7	0	4	3	12
ASE_00406	RNaseP_bact_a links to Rfam database...	0.97	0.94	1.00	88	48740	2	0	0	2	6
ASE_00408	-	0.95	0.93	0.97	66	32317	6	2	0	4	5
ASE_00409	-	0.79	0.76	0.83	63	40965	13	2	11	0	20
ASE_00411	RNaseP_bact_a links to Rfam database...	0.82	0.81	0.83	72	49368	15	5	10	0	17
ASE_00412	RNaseP_bact_a links to Rfam database...	0.87	0.81	0.94	85	58221	5	0	5	0	20
ASE_00413	RNaseP_bact_a links to Rfam database...	0.90	0.90	0.90	73	44470	11	5	3	3	8
ASE_00414	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.88	68	46283	15	0	9	6	27
ASE_00415	RNaseP_bact_a links to Rfam database...	0.89	0.85	0.93	88	54851	7	0	7	0	15
ASE_00416	RNaseP_bact_a links to Rfam database...	0.92	0.88	0.96	112	77304	8	1	4	3	15
ASE_00417	RNaseP_arch links to Rfam database...	0.83	0.76	0.90	76	54531	11	0	8	3	24
ASE_00418	RNaseP_arch links to Rfam database...	0.84	0.77	0.91	58	38717	9	0	6	3	17
ASE_00419	RNaseP_bact_a links to Rfam database...	0.96	0.93	0.98	96	54848	3	1	1	1	7
ASE_00422	RNaseP_bact_a links to Rfam database...	0.92	0.88	0.97	83	46885	9	0	3	6	11
ASE_00423	RNaseP_bact_a links to Rfam database...	0.92	0.87	0.97	95	56855	4	2	1	1	14
ASE_00426	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.84	77	60983	15	1	14	0	31
ASE_00428	RNaseP_bact_a links to Rfam database...	0.87	0.82	0.92	102	76525	10	1	8	1	23
ASE_00429	-	0.94	0.88	1.00	58	28145	3	0	0	3	8
ASE_00430	RNaseP_bact_a links to Rfam database...	0.95	0.91	1.00	88	46883	3	0	0	3	9
ASE_00431	RNaseP_bact_a links to Rfam database...	0.85	0.75	0.97	71	46287	9	0	2	7	24
ASE_00434	RNaseP_bact_b links to Rfam database...	0.79	0.75	0.84	82	68167	26	3	13	10	28
ASE_00437	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.83	91	79292	18	0	18	0	44
ASE_00438	RNaseP_bact_a links to Rfam database...	0.87	0.84	0.91	97	65959	10	0	10	0	19
ASE_00441	RNaseP_bact_a links to Rfam database...	0.93	0.87	0.99	97	64163	4	0	1	3	15
ASE_00447	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	79	60288	11	0	11	0	37
ASE_00448	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.97	95	64163	8	0	3	5	17
ASE_00451	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.97	106	70767	3	1	2	0	19
CRW_00004	-	0.77	0.79	0.76	103	154155	50	15	17	18	28
CRW_00005	-	0.85	0.83	0.86	110	137947	38	4	14	20	22
CRW_00007	-	0.39	0.41	0.38	54	144849	88	25	63	0	79
CRW_00009	-	0.64	0.64	0.63	89	137933	67	8	45	14	49
CRW_00010	-	0.79	0.78	0.80	98	102708	30	8	17	5	28
CRW_00011	-	0.93	0.91	0.96	125	118211	18	0	5	13	13
CRW_00012	-	0.30	0.30	0.29	43	147005	107	19	86	2	98
CRW_00013	Intron_gpI links to Rfam database...	0.67	0.60	0.76	69	103649	34	4	18	12	46
CRW_00014	-	0.73	0.72	0.74	88	103621	38	7	24	7	35
CRW_00016	Intron_gpI links to Rfam database...	0.81	0.73	0.92	87	77326	14	3	5	6	33
CRW_00017	-	0.63	0.65	0.61	59	92138	55	4	34	17	32
CRW_00018	-	0.45	0.49	0.42	59	182571	94	40	40	14	62
CRW_00019	-	0.87	0.84	0.91	115	127638	26	4	8	14	22
CRW_00423	-	0.15	0.14	0.17	27	242395	135	21	113	1	162
CRW_00429	-	0.47	0.42	0.52	97	306751	94	12	76	6	136
CRW_00605	-	0.69	0.64	0.74	45	183860	94	0	16	78	25
CRW_00608	-	0.72	0.67	0.78	53	35710	20	0	15	5	26
CRW_00610	Intron_gpI links to Rfam database...	0.87	0.80	0.94	65	36246	7	1	3	3	16
CRW_00611	-	0.80	0.73	0.87	55	31312	10	1	7	2	20
CRW_00612	-	0.71	0.63	0.79	59	270405	125	0	16	109	34
CRW_00613	Intron_gpI links to Rfam database...	0.47	0.42	0.53	33	34918	36	3	26	7	45
CRW_00614	Intron_gpI links to Rfam database...	0.14	0.14	0.14	8	121715	98	13	35	50	49
CRW_00618	Intron_gpI links to Rfam database...	0.21	0.21	0.21	13	56218	64	9	40	15	48
CRW_00619	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	164974	131	8	43	80	73
CRW_00620	Intron_gpI links to Rfam database...	0.31	0.32	0.31	20	150910	112	14	31	67	43
CRW_00621	Intron_gpI links to Rfam database...	0.44	0.41	0.48	29	153121	120	6	25	89	42
CRW_00623	Intron_gpI links to Rfam database...	0.35	0.30	0.41	25	129734	101	6	30	65	58
CRW_00626	-	0.70	0.68	0.71	71	100925	48	9	20	19	33
CRW_00629	-	0.72	0.70	0.74	86	91261	32	9	22	1	36
CRW_00632	-	0.92	0.88	0.97	113	82911	6	0	4	2	15
CRW_00633	Intron_gpI links to Rfam database...	0.81	0.75	0.86	80	63453	15	4	9	2	26
CRW_00634	Intron_gpI links to Rfam database...	0.62	0.62	0.62	58	64526	36	9	27	0	36
CRW_00635	-	0.58	0.54	0.62	74	109159	46	8	37	1	63
CRW_00636	-	0.61	0.57	0.64	82	114832	49	9	37	3	61
CRW_00637	-	0.42	0.39	0.44	62	133763	81	11	67	3	96
CRW_00639	-	0.89	0.86	0.94	118	126630	24	2	6	16	20
CRW_00641	-	0.83	0.82	0.85	62	39830	21	2	9	10	14
CRW_00642	-	0.57	0.60	0.53	39	47205	42	9	25	8	26
CRW_00643	-	0.66	0.65	0.67	79	123138	62	11	28	23	43
CRW_00645	-	0.81	0.81	0.81	54	35444	19	6	7	6	13
CRW_00646	-	0.58	0.55	0.61	35	34923	24	4	18	2	29
CRW_00648	-	0.76	0.74	0.78	109	137936	41	10	20	11	39
CRW_00649	-	0.69	0.65	0.73	80	204371	103	9	20	74	44
CRW_00650	-	0.80	0.75	0.85	106	112925	24	3	16	5	36
CRW_00651	-	0.88	0.83	0.92	101	100018	17	0	9	8	20
CRW_00652	-	0.85	0.81	0.90	105	132238	38	1	11	26	25
CRW_00653	-	0.95	0.92	0.98	123	94704	6	0	3	3	11
CRW_00654	-	0.91	0.85	0.97	105	78102	4	0	3	1	19
CRW_00655	-	0.89	0.82	0.97	102	89148	7	0	3	4	22
CRW_00656	-	0.76	0.71	0.81	92	90412	25	6	15	4	37
CRW_00657	-	0.87	0.84	0.90	114	105904	22	2	10	10	22
CRW_00658	-	0.70	0.68	0.72	69	74595	33	5	22	6	33
CRW_00659	-	0.50	0.49	0.52	30	32327	37	5	23	9	31
CRW_00660	-	0.48	0.47	0.50	28	22099	31	5	23	3	32
CRW_00661	-	0.17	0.18	0.17	9	24256	46	11	34	1	42
CRW_00662	-	0.42	0.42	0.42	27	28616	44	7	30	7	38
CRW_00663	-	0.22	0.21	0.23	13	26050	48	8	35	5	48
CRW_00664	-	0.05	0.05	0.05	4	53549	78	21	54	3	74
CRW_00665	-	0.10	0.10	0.10	5	23605	44	16	27	1	43
CRW_00666	-	0.74	0.71	0.77	89	96026	30	4	22	4	37
CRW_00668	-	0.76	0.75	0.78	112	163734	44	6	26	12	38
CRW_00669	-	0.70	0.66	0.76	78	97358	34	2	23	9	41
CRW_00670	Intron_gpI links to Rfam database...	0.86	0.83	0.90	99	70015	11	4	7	0	21
CRW_00671	Intron_gpI links to Rfam database...	0.83	0.79	0.88	92	62731	12	3	9	0	25
CRW_00672	Intron_gpI links to Rfam database...	0.86	0.84	0.89	93	72285	13	4	8	1	18
CRW_00673	-	0.83	0.84	0.81	88	100020	30	14	6	10	17
CRW_00674	Intron_gpI links to Rfam database...	0.81	0.77	0.85	95	83324	19	1	16	2	29
CRW_00676	Intron_gpI links to Rfam database...	0.60	0.57	0.63	66	93424	41	9	29	3	49
CRW_00677	-	0.81	0.75	0.87	79	71919	17	5	7	5	26
CRW_00679	-	0.79	0.74	0.84	79	76542	19	5	10	4	28
CRW_00681	-	0.66	0.66	0.66	74	112938	53	13	25	15	38
CRW_00685	-	0.69	0.70	0.69	74	156972	62	16	18	28	32
CRW_00686	-	0.61	0.57	0.66	71	95159	48	2	34	12	54
CRW_00687	-	0.71	0.67	0.76	44	28622	18	6	8	4	22
CRW_00688	-	0.84	0.81	0.88	46	21893	6	2	4	0	11
CRW_00689	-	0.53	0.52	0.55	40	33597	35	6	27	2	37
CRW_00690	-	0.56	0.52	0.60	36	33351	28	5	19	4	33
CRW_00691	-	0.65	0.63	0.67	42	27198	24	3	18	3	25
CRW_00692	Intron_gpI links to Rfam database...	0.77	0.73	0.81	66	68554	24	6	9	9	24
CRW_00693	-	0.86	0.83	0.90	101	89141	22	0	11	11	21
CRW_00694	-	0.89	0.84	0.95	102	85798	7	0	5	2	20
CRW_00699	-	0.82	0.76	0.88	96	91697	14	0	13	1	30
CRW_00700	-	0.83	0.79	0.87	116	180767	38	2	16	20	31
CRW_00703	-	0.55	0.55	0.55	36	40405	36	9	20	7	30
CRW_00714	-	0.50	0.47	0.54	50	186263	93	12	30	51	57
CRW_00715	-	0.66	0.57	0.78	59	69302	19	1	16	2	45
CRW_00716	-	0.62	0.56	0.68	50	193679	82	2	22	58	39
CRW_00717	-	0.49	0.43	0.56	64	153620	68	11	40	17	84
CRW_00718	-	0.63	0.54	0.73	103	189894	55	1	38	16	88
CRW_00719	-	0.71	0.73	0.69	66	230086	86	15	14	57	25
CRW_00720	-	0.57	0.60	0.53	55	208231	98	25	24	49	36
CRW_00721	-	0.62	0.62	0.63	42	58586	53	8	17	28	26
CRW_00764	-	0.28	0.27	0.29	53	252935	134	29	99	6	143
CRW_00775	-	0.30	0.27	0.34	57	314654	128	18	92	18	155
CRW_00815	-	0.69	0.69	0.68	109	159735	53	14	37	2	49
CRW_00816	-	0.54	0.53	0.55	69	143791	66	13	43	10	60
CRW_00820	-	0.62	0.59	0.64	86	136369	59	8	40	11	59
PDB_00072	-	0.49	0.50	0.49	104	148029	107	13	94	0	106
PDB_00078	-	0.80	0.75	0.86	86	49670	14	3	11	0	29
PDB_00079	-	0.73	0.68	0.79	96	121649	52	10	16	26	46
PDB_00278	-	0.64	0.56	0.74	40	24922	14	0	14	0	32
PDB_00403	-	0.76	0.70	0.82	107	124619	34	7	17	10	46
PDB_00423	-	0.86	0.76	0.98	56	26739	1	1	0	0	18
PDB_00701	-	0.71	0.65	0.78	71	45360	24	0	20	4	38
PDB_00747	-	0.81	0.69	0.95	55	24473	3	0	3	0	25
PDB_00827	Intron_gpI links to Rfam database...	0.79	0.65	0.96	53	26973	3	0	2	1	28
PDB_00917	-	0.84	0.79	0.89	75	35161	19	4	5	10	20
PDB_00919	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.75	58	44176	24	1	18	5	45
PDB_01129	-	0.37	0.34	0.41	24	35453	38	18	16	4	47
PDB_01157	-	0.33	0.31	0.36	30	50003	54	10	43	1	68
PDB_01166	-	0.59	0.54	0.64	115	181926	70	7	58	5	97
RFA_00597	Telomerase-vert links to Rfam database...	0.40	0.40	0.39	44	97791	79	14	54	11	65
RFA_00598	Telomerase-vert links to Rfam database...	0.45	0.45	0.46	45	84568	67	11	42	14	56
RFA_00599	Telomerase-vert links to Rfam database...	0.27	0.27	0.27	30	101365	98	14	66	18	81
RFA_00600	Telomerase-vert links to Rfam database...	0.23	0.24	0.21	24	120183	108	34	54	20	76
RFA_00601	Telomerase-vert links to Rfam database...	0.33	0.35	0.32	40	99109	96	28	58	10	74
RFA_00602	Telomerase-vert links to Rfam database...	0.52	0.53	0.51	61	101356	72	21	37	14	55
TMR_00007	tmRNA links to Rfam database...	0.79	0.74	0.83	80	61680	20	4	12	4	28
TMR_00008	tmRNA links to Rfam database...	0.68	0.62	0.74	66	65977	29	9	14	6	40
TMR_00010	tmRNA links to Rfam database...	0.60	0.54	0.67	52	57892	26	2	24	0	44
TMR_00012	tmRNA links to Rfam database...	0.62	0.59	0.64	48	64545	39	7	20	12	33
TMR_00014	tmRNA links to Rfam database...	0.85	0.75	0.95	83	68548	9	1	3	5	27
TMR_00017	tmRNA links to Rfam database...	0.84	0.76	0.93	78	67077	6	2	4	0	24
TMR_00018	tmRNA links to Rfam database...	0.77	0.73	0.82	67	64538	15	7	8	0	25
TMR_00028	tmRNA links to Rfam database...	0.69	0.64	0.74	62	62751	23	5	17	1	35
TMR_00030	tmRNA links to Rfam database...	0.47	0.44	0.50	49	75757	50	10	39	1	62
TMR_00034	tmRNA links to Rfam database...	0.65	0.61	0.71	67	59936	33	1	27	5	43
TMR_00035	tmRNA links to Rfam database...	0.50	0.46	0.55	45	67814	43	4	33	6	53
TMR_00036	tmRNA links to Rfam database...	0.53	0.48	0.59	48	90443	62	6	28	28	53
TMR_00038	tmRNA links to Rfam database...	0.73	0.66	0.81	73	71163	17	5	12	0	37
TMR_00042	tmRNA links to Rfam database...	0.54	0.47	0.62	46	62761	31	4	24	3	52
TMR_00046	tmRNA links to Rfam database...	0.54	0.51	0.58	49	62750	39	6	30	3	47
TMR_00047	tmRNA links to Rfam database...	0.30	0.33	0.28	19	48448	51	17	32	2	38
TMR_00048	tmRNA links to Rfam database...	0.52	0.48	0.55	46	64897	44	5	32	7	49
TMR_00049	tmRNA links to Rfam database...	0.34	0.32	0.36	28	63112	58	9	41	8	59
TMR_00051	tmRNA links to Rfam database...	0.74	0.66	0.83	62	65628	24	0	13	11	32
TMR_00055	tmRNA links to Rfam database...	0.39	0.36	0.43	41	78907	55	15	40	0	73
TMR_00057	tmRNA links to Rfam database...	0.49	0.53	0.46	42	73829	57	19	30	8	37
TMR_00061	tmRNA links to Rfam database...	0.54	0.52	0.56	51	59594	50	9	31	10	48
TMR_00062	tmRNA links to Rfam database...	0.73	0.68	0.78	71	78515	29	7	13	9	33
TMR_00064	tmRNA links to Rfam database...	0.51	0.46	0.57	47	76945	38	8	28	2	56
TMR_00065	tmRNA links to Rfam database...	0.69	0.60	0.79	64	76555	18	5	12	1	42
TMR_00067	tmRNA links to Rfam database...	0.76	0.70	0.82	80	82117	21	4	14	3	34
TMR_00073	tmRNA links to Rfam database...	0.60	0.53	0.69	62	65613	28	4	24	0	55
TMR_00076	tmRNA links to Rfam database...	0.63	0.60	0.67	60	70786	39	10	20	9	40
TMR_00080	tmRNA links to Rfam database...	0.60	0.59	0.61	57	70407	37	8	28	1	39
TMR_00081	tmRNA links to Rfam database...	0.73	0.64	0.84	68	67080	14	1	12	1	38
TMR_00082	tmRNA links to Rfam database...	0.70	0.64	0.77	61	67817	20	7	11	2	35
TMR_00083	tmRNA links to Rfam database...	0.83	0.75	0.91	79	68178	9	2	6	1	26
TMR_00092	tmRNA links to Rfam database...	0.63	0.63	0.62	64	67425	43	9	30	4	37
TMR_00093	tmRNA links to Rfam database...	0.61	0.58	0.64	59	64169	35	8	25	2	43
TMR_00096	tmRNA links to Rfam database...	0.50	0.47	0.54	47	64893	40	13	27	0	53
TMR_00101	tmRNA links to Rfam database...	0.77	0.73	0.82	78	64166	19	3	14	2	29
TMR_00102	tmRNA links to Rfam database...	0.43	0.43	0.44	43	64164	56	9	45	2	58
TMR_00103	tmRNA links to Rfam database...	0.73	0.69	0.77	75	64163	25	9	14	2	33
TMR_00104	-	0.19	0.20	0.18	14	66716	73	24	41	8	56
TMR_00106	tmRNA links to Rfam database...	0.65	0.63	0.67	76	89987	41	7	30	4	44
TMR_00109	tmRNA links to Rfam database...	0.58	0.52	0.65	64	88311	41	4	31	6	58
TMR_00111	tmRNA links to Rfam database...	0.56	0.51	0.61	62	90424	42	9	30	3	60
TMR_00116	tmRNA links to Rfam database...	0.54	0.50	0.58	52	64890	45	5	33	7	52
TMR_00117	tmRNA links to Rfam database...	0.69	0.64	0.73	76	80096	38	7	21	10	42
TMR_00118	tmRNA links to Rfam database...	0.71	0.64	0.78	77	81307	29	3	19	7	43
TMR_00119	tmRNA links to Rfam database...	0.71	0.68	0.75	71	71915	28	6	18	4	33
TMR_00123	tmRNA links to Rfam database...	0.88	0.79	0.99	80	66349	1	1	0	0	21
TMR_00124	tmRNA links to Rfam database...	0.59	0.56	0.63	55	70412	41	8	25	8	43
TMR_00125	tmRNA links to Rfam database...	0.71	0.65	0.79	64	64180	21	5	12	4	35
TMR_00127	tmRNA links to Rfam database...	0.71	0.65	0.77	63	62753	26	2	17	7	34
TMR_00128	tmRNA links to Rfam database...	0.53	0.52	0.54	50	60982	43	10	33	0	46
TMR_00131	tmRNA links to Rfam database...	0.65	0.60	0.70	59	64896	27	3	22	2	40
TMR_00135	tmRNA links to Rfam database...	0.73	0.66	0.80	65	62754	25	2	14	9	34
TMR_00136	tmRNA links to Rfam database...	0.57	0.53	0.61	54	74602	42	5	30	7	47
TMR_00137	tmRNA links to Rfam database...	0.75	0.66	0.86	59	61006	13	1	9	3	30
TMR_00139	tmRNA links to Rfam database...	0.49	0.51	0.48	46	62033	53	17	32	4	45
TMR_00140	tmRNA links to Rfam database...	0.81	0.73	0.90	73	73839	21	5	3	13	27
TMR_00142	tmRNA links to Rfam database...	0.57	0.52	0.63	53	70792	41	6	25	10	49
TMR_00143	tmRNA links to Rfam database...	0.74	0.67	0.81	69	64535	26	4	12	10	34
TMR_00144	tmRNA links to Rfam database...	0.59	0.55	0.63	57	74214	34	7	27	0	46
TMR_00146	tmRNA links to Rfam database...	0.76	0.71	0.81	30	32094	32	3	4	25	12
TMR_00150	tmRNA links to Rfam database...	0.63	0.60	0.68	25	43034	45	3	9	33	17
TMR_00152	tmRNA links to Rfam database...	0.43	0.40	0.47	46	81309	59	2	49	8	69
TMR_00155	tmRNA links to Rfam database...	0.56	0.48	0.65	50	61699	34	1	26	7	54
TMR_00156	tmRNA links to Rfam database...	0.77	0.71	0.84	69	60296	17	3	10	4	28
TMR_00158	tmRNA links to Rfam database...	0.55	0.48	0.62	48	60649	30	1	28	1	51
TMR_00159	tmRNA links to Rfam database...	0.59	0.55	0.63	51	62047	32	6	24	2	41
TMR_00160	tmRNA links to Rfam database...	0.80	0.75	0.86	71	64537	20	5	7	8	24
TMR_00164	tmRNA links to Rfam database...	0.69	0.61	0.77	65	66711	21	1	18	2	41
TMR_00165	tmRNA links to Rfam database...	0.54	0.49	0.59	48	61695	39	7	26	6	49
TMR_00166	tmRNA links to Rfam database...	0.74	0.68	0.81	69	61691	16	5	11	0	32
TMR_00168	tmRNA links to Rfam database...	0.77	0.71	0.84	81	60979	19	1	14	4	33
TMR_00173	tmRNA links to Rfam database...	0.32	0.36	0.29	15	42144	55	13	23	19	27
TMR_00179	tmRNA links to Rfam database...	0.65	0.62	0.68	61	67071	37	3	26	8	37
TMR_00180	tmRNA links to Rfam database...	0.68	0.63	0.74	62	67077	27	6	16	5	37
TMR_00182	tmRNA links to Rfam database...	0.47	0.44	0.50	45	66340	50	4	41	5	57
TMR_00183	tmRNA links to Rfam database...	0.48	0.47	0.51	48	63095	49	3	44	2	55
TMR_00184	tmRNA links to Rfam database...	0.52	0.50	0.55	51	63097	43	4	38	1	51
TMR_00193	tmRNA links to Rfam database...	0.35	0.34	0.37	27	59267	55	11	35	9	53
TMR_00194	tmRNA links to Rfam database...	0.57	0.52	0.64	48	62760	30	1	26	3	45
TMR_00196	tmRNA links to Rfam database...	0.51	0.46	0.56	45	60994	40	8	28	4	52
TMR_00199	tmRNA links to Rfam database...	0.47	0.47	0.47	43	62744	53	17	31	5	49
TMR_00200	-	0.47	0.45	0.49	34	41546	45	7	29	9	41
TMR_00204	tmRNA links to Rfam database...	0.59	0.52	0.67	50	60303	28	7	18	3	47
TMR_00207	tmRNA links to Rfam database...	0.75	0.68	0.83	70	72306	15	2	12	1	33
TMR_00223	tmRNA links to Rfam database...	0.57	0.53	0.62	50	64180	32	9	22	1	45
TMR_00224	tmRNA links to Rfam database...	0.75	0.65	0.87	66	64904	15	3	7	5	35
TMR_00226	tmRNA links to Rfam database...	0.69	0.65	0.73	68	69658	31	5	20	6	37
TMR_00227	tmRNA links to Rfam database...	0.70	0.66	0.74	67	70034	27	4	20	3	34
TMR_00228	tmRNA links to Rfam database...	0.48	0.45	0.51	49	88313	48	14	34	0	59
TMR_00234	tmRNA links to Rfam database...	0.77	0.69	0.85	70	58914	17	2	10	5	32
TMR_00238	tmRNA links to Rfam database...	0.46	0.47	0.45	47	84562	64	12	45	7	54
TMR_00239	tmRNA links to Rfam database...	0.70	0.69	0.72	66	61684	26	7	19	0	30
TMR_00240	tmRNA links to Rfam database...	0.59	0.60	0.59	51	63103	40	12	24	4	34
TMR_00246	-	0.42	0.44	0.41	15	78173	83	5	17	61	19
TMR_00248	tmRNA links to Rfam database...	0.38	0.42	0.35	16	54239	62	17	13	32	22
TMR_00257	tmRNA links to Rfam database...	0.78	0.70	0.86	69	67081	11	1	10	0	29
TMR_00259	tmRNA links to Rfam database...	0.64	0.55	0.74	57	67819	20	7	13	0	46
TMR_00261	tmRNA links to Rfam database...	0.59	0.55	0.63	56	66706	33	7	26	0	45
TMR_00262	tmRNA links to Rfam database...	0.65	0.62	0.68	64	74211	31	6	24	1	40
TMR_00271	tmRNA links to Rfam database...	0.66	0.62	0.71	56	64182	27	6	17	4	35
TMR_00274	tmRNA links to Rfam database...	0.71	0.66	0.78	69	66706	25	4	16	5	36
TMR_00278	tmRNA links to Rfam database...	0.70	0.64	0.77	65	67812	25	2	17	6	37
TMR_00279	tmRNA links to Rfam database...	0.45	0.40	0.50	38	68930	46	5	33	8	56
TMR_00280	tmRNA links to Rfam database...	0.72	0.67	0.77	68	65978	26	1	19	6	33
TMR_00283	tmRNA links to Rfam database...	0.64	0.58	0.70	56	65261	31	8	16	7	40
TMR_00289	tmRNA links to Rfam database...	0.63	0.63	0.63	62	67063	39	16	20	3	36
TMR_00290	tmRNA links to Rfam database...	0.64	0.63	0.66	58	64173	35	4	26	5	34
TMR_00296	tmRNA links to Rfam database...	0.29	0.29	0.29	28	68910	68	16	52	0	70
TMR_00298	tmRNA links to Rfam database...	0.50	0.47	0.54	47	68178	43	9	31	3	54
TMR_00300	tmRNA links to Rfam database...	0.53	0.49	0.57	55	70404	48	3	38	7	57
TMR_00301	tmRNA links to Rfam database...	0.68	0.63	0.73	60	82133	33	5	17	11	36
TMR_00302	tmRNA links to Rfam database...	0.55	0.54	0.56	51	77330	49	11	29	9	43
TMR_00305	tmRNA links to Rfam database...	0.78	0.70	0.88	71	60994	17	2	8	7	31
TMR_00306	tmRNA links to Rfam database...	0.79	0.75	0.83	79	64166	19	2	14	3	27
TMR_00310	tmRNA links to Rfam database...	0.61	0.56	0.66	55	63820	32	3	25	4	43
TMR_00317	tmRNA links to Rfam database...	0.61	0.59	0.64	60	68171	37	3	31	3	42
TMR_00331	tmRNA links to Rfam database...	0.48	0.49	0.48	40	66712	56	9	34	13	42
TMR_00332	tmRNA links to Rfam database...	0.78	0.70	0.88	69	67083	10	2	7	1	30
TMR_00334	tmRNA links to Rfam database...	0.77	0.68	0.87	69	66716	10	3	7	0	32
TMR_00337	tmRNA links to Rfam database...	0.57	0.51	0.64	61	82933	34	3	31	0	58
TMR_00340	tmRNA links to Rfam database...	0.63	0.58	0.68	47	64192	38	6	16	16	34
TMR_00341	tmRNA links to Rfam database...	0.63	0.60	0.65	55	63106	31	8	21	2	37
TMR_00343	tmRNA links to Rfam database...	0.74	0.69	0.80	72	64890	18	2	16	0	33
TMR_00345	tmRNA links to Rfam database...	0.62	0.60	0.65	62	63808	39	3	30	6	42
TMR_00346	tmRNA links to Rfam database...	0.65	0.60	0.70	56	64181	26	5	19	2	38
TMR_00348	tmRNA links to Rfam database...	0.41	0.36	0.47	36	77344	54	8	33	13	63
TMR_00352	tmRNA links to Rfam database...	0.25	0.28	0.23	21	95173	89	16	56	17	54
TMR_00353	tmRNA links to Rfam database...	0.51	0.48	0.56	50	84165	52	10	30	12	55
TMR_00357	tmRNA links to Rfam database...	0.53	0.52	0.54	48	82939	55	17	24	14	44
TMR_00358	tmRNA links to Rfam database...	0.66	0.60	0.74	59	74998	36	4	17	15	40
TMR_00361	-	0.36	0.44	0.29	32	93419	78	34	43	1	40
TMR_00366	tmRNA links to Rfam database...	0.51	0.48	0.54	48	67807	51	15	26	10	52
TMR_00372	tmRNA links to Rfam database...	0.64	0.65	0.64	62	70403	44	9	26	9	34
TMR_00374	tmRNA links to Rfam database...	0.61	0.60	0.63	55	81723	34	12	20	2	37
TMR_00375	tmRNA links to Rfam database...	0.65	0.58	0.72	57	73457	34	3	19	12	41
TMR_00376	tmRNA links to Rfam database...	0.65	0.61	0.68	58	74606	35	11	16	8	37
TMR_00378	tmRNA links to Rfam database...	0.52	0.49	0.55	48	67809	45	13	26	6	49
TMR_00383	tmRNA links to Rfam database...	0.56	0.53	0.59	53	66705	44	7	30	7	47
TMR_00384	tmRNA links to Rfam database...	0.82	0.72	0.93	78	65619	6	0	6	0	30
TMR_00393	tmRNA links to Rfam database...	0.62	0.62	0.61	33	53247	59	9	12	38	20
TMR_00395	tmRNA links to Rfam database...	0.77	0.68	0.87	74	64535	11	4	7	0	35
TMR_00398	tmRNA links to Rfam database...	0.76	0.69	0.85	73	65255	13	5	8	0	33
TMR_00399	tmRNA links to Rfam database...	0.55	0.53	0.56	50	64891	41	11	28	2	44
TMR_00404	tmRNA links to Rfam database...	0.70	0.70	0.70	64	67437	40	9	18	13	28
TMR_00408	tmRNA links to Rfam database...	0.54	0.52	0.57	46	65985	39	12	23	4	42
TMR_00409	tmRNA links to Rfam database...	0.85	0.85	0.85	39	68589	57	1	6	50	7
TMR_00411	tmRNA links to Rfam database...	0.40	0.40	0.41	35	60989	58	10	41	7	52
TMR_00415	tmRNA links to Rfam database...	0.57	0.55	0.60	56	67067	42	4	34	4	45
TMR_00419	tmRNA links to Rfam database...	0.50	0.43	0.59	48	81728	50	7	27	16	63
TMR_00422	tmRNA links to Rfam database...	0.55	0.53	0.58	49	67811	44	7	29	8	43
TMR_00423	tmRNA links to Rfam database...	0.52	0.56	0.49	41	63819	50	17	26	7	32
TMR_00427	tmRNA links to Rfam database...	0.70	0.66	0.74	64	67442	25	8	14	3	33
TMR_00429	tmRNA links to Rfam database...	0.70	0.64	0.76	70	74599	24	7	15	2	39
TMR_00430	tmRNA links to Rfam database...	0.39	0.38	0.40	41	82518	64	15	47	2	68
TMR_00431	tmRNA links to Rfam database...	0.68	0.65	0.71	36	51952	44	3	12	29	19
TMR_00432	tmRNA links to Rfam database...	0.68	0.65	0.70	68	79703	34	11	18	5	36
TMR_00433	tmRNA links to Rfam database...	0.60	0.57	0.65	60	80107	34	6	27	1	46
TMR_00439	tmRNA links to Rfam database...	0.61	0.55	0.67	56	68552	32	4	23	5	45
TMR_00441	tmRNA links to Rfam database...	0.18	0.18	0.19	15	62048	70	14	51	5	68
TMR_00443	tmRNA links to Rfam database...	0.87	0.77	0.99	80	67080	1	1	0	0	24
TMR_00448	tmRNA links to Rfam database...	0.76	0.68	0.85	63	62054	11	0	11	0	29
TMR_00451	tmRNA links to Rfam database...	0.69	0.62	0.77	55	63475	16	5	11	0	34
TMR_00457	tmRNA links to Rfam database...	0.61	0.59	0.63	60	78511	38	4	31	3	42
TMR_00458	tmRNA links to Rfam database...	0.73	0.68	0.79	63	63466	18	2	15	1	30
TMR_00460	tmRNA links to Rfam database...	0.68	0.65	0.71	69	79304	31	6	22	3	37
TMR_00465	tmRNA links to Rfam database...	0.59	0.56	0.62	53	64176	33	13	19	1	41
TMR_00469	tmRNA links to Rfam database...	0.79	0.74	0.84	74	64532	14	9	5	0	26
TMR_00472	tmRNA links to Rfam database...	0.72	0.67	0.77	65	64536	23	7	12	4	32
TMR_00478	tmRNA links to Rfam database...	0.44	0.44	0.44	44	71910	58	18	38	2	55
TMR_00498	tmRNA links to Rfam database...	0.70	0.68	0.72	67	68913	26	9	17	0	32
TMR_00499	tmRNA links to Rfam database...	0.45	0.44	0.46	44	64525	57	4	47	6	55
TMR_00501	tmRNA links to Rfam database...	0.49	0.47	0.52	43	62398	42	9	31	2	49
TMR_00502	tmRNA links to Rfam database...	0.61	0.57	0.65	53	75384	32	10	19	3	40
TMR_00503	tmRNA links to Rfam database...	0.73	0.68	0.78	76	67799	28	3	18	7	35
TMR_00519	tmRNA links to Rfam database...	0.72	0.65	0.79	62	63112	19	2	14	3	33
TMR_00520	tmRNA links to Rfam database...	0.72	0.67	0.78	66	63105	28	0	19	9	33
TMR_00522	tmRNA links to Rfam database...	0.64	0.61	0.67	59	63102	37	3	26	8	38
TMR_00528	tmRNA links to Rfam database...	0.77	0.70	0.85	68	63110	12	6	6	0	29
TMR_00540	tmRNA links to Rfam database...	0.74	0.67	0.80	70	73449	19	6	11	2	34
TMR_00541	tmRNA links to Rfam database...	0.61	0.57	0.65	60	61683	38	0	33	5	45
TMR_00544	tmRNA links to Rfam database...	0.52	0.49	0.55	53	89580	48	12	31	5	55
TMR_00547	tmRNA links to Rfam database...	0.73	0.65	0.81	65	65261	17	1	14	2	35
TMR_00553	tmRNA links to Rfam database...	0.51	0.46	0.58	37	48141	31	6	21	4	44
TMR_00559	tmRNA links to Rfam database...	0.67	0.62	0.72	63	62393	25	9	16	0	38
TMR_00560	tmRNA links to Rfam database...	0.69	0.64	0.73	63	60989	23	10	13	0	35
TMR_00562	tmRNA links to Rfam database...	0.53	0.48	0.59	49	72688	42	2	32	8	53
TMR_00563	tmRNA links to Rfam database...	0.74	0.72	0.76	74	75368	33	9	15	9	29
TMR_00566	tmRNA links to Rfam database...	0.59	0.55	0.63	55	60638	36	3	30	3	45
TMR_00568	tmRNA links to Rfam database...	0.69	0.63	0.76	62	60644	22	2	18	2	37
TMR_00570	tmRNA links to Rfam database...	0.58	0.54	0.63	52	60295	35	5	26	4	45
TMR_00571	tmRNA links to Rfam database...	0.61	0.57	0.66	56	60641	35	2	27	6	43
TMR_00576	tmRNA links to Rfam database...	0.84	0.78	0.90	80	60289	12	6	3	3	22
TMR_00579	tmRNA links to Rfam database...	0.38	0.40	0.37	36	80503	74	17	45	12	54
TMR_00580	tmRNA links to Rfam database...	0.68	0.65	0.71	65	60635	29	7	19	3	35
TMR_00581	tmRNA links to Rfam database...	0.73	0.67	0.79	66	62397	23	4	14	5	32
TMR_00584	tmRNA links to Rfam database...	0.80	0.73	0.88	71	60994	14	4	6	4	26
TMR_00586	tmRNA links to Rfam database...	0.68	0.64	0.73	62	60990	26	8	15	3	35
TMR_00587	tmRNA links to Rfam database...	0.82	0.77	0.88	77	61337	11	4	7	0	23
TMR_00588	tmRNA links to Rfam database...	0.53	0.48	0.60	48	77341	41	5	27	9	53
TMR_00594	tmRNA links to Rfam database...	0.61	0.55	0.69	57	79318	30	7	19	4	47
TMR_00596	tmRNA links to Rfam database...	0.53	0.49	0.57	47	78127	45	11	25	9	48
TMR_00599	tmRNA links to Rfam database...	0.45	0.49	0.42	35	63106	62	18	31	13	37
TMR_00600	tmRNA links to Rfam database...	0.72	0.63	0.82	72	79712	18	6	10	2	43
TMR_00601	tmRNA links to Rfam database...	0.69	0.67	0.72	28	58957	55	1	10	44	14
TMR_00603	tmRNA links to Rfam database...	0.80	0.74	0.86	32	60341	49	1	4	44	11
TMR_00604	tmRNA links to Rfam database...	0.78	0.72	0.84	81	62738	16	2	14	0	31
TMR_00605	tmRNA links to Rfam database...	0.59	0.55	0.63	59	74211	39	11	24	4	49
TMR_00606	tmRNA links to Rfam database...	0.67	0.64	0.70	69	68907	35	9	21	5	38
TMR_00609	tmRNA links to Rfam database...	0.68	0.66	0.71	75	63440	31	8	23	0	38
TMR_00610	tmRNA links to Rfam database...	0.79	0.74	0.85	77	62037	21	6	8	7	27
TMR_00611	tmRNA links to Rfam database...	0.71	0.70	0.73	71	61328	26	6	20	0	31
TMR_00612	tmRNA links to Rfam database...	0.46	0.45	0.47	47	60625	54	7	47	0	57
TMR_00614	tmRNA links to Rfam database...	0.69	0.64	0.74	67	60984	30	2	22	6	37
TMR_00615	tmRNA links to Rfam database...	0.78	0.72	0.84	69	63821	18	7	6	5	27
TMR_00616	tmRNA links to Rfam database...	0.63	0.62	0.65	61	67067	34	8	25	1	38
TMR_00617	tmRNA links to Rfam database...	0.61	0.62	0.61	36	34657	27	9	14	4	22
TMR_00623	tmRNA links to Rfam database...	0.63	0.56	0.72	60	61342	25	2	21	2	48
TMR_00624	tmRNA links to Rfam database...	0.55	0.53	0.58	57	62383	46	7	34	5	51
TMR_00625	tmRNA links to Rfam database...	0.52	0.50	0.55	53	78907	44	12	31	1	53
TMR_00626	tmRNA links to Rfam database...	0.77	0.72	0.84	78	67803	22	6	9	7	31
TMR_00680	tmRNA links to Rfam database...	0.33	0.32	0.33	32	67800	68	12	52	4	67
TMR_00681	tmRNA links to Rfam database...	0.62	0.60	0.65	58	65977	31	4	27	0	39
TMR_00683	tmRNA links to Rfam database...	0.56	0.57	0.55	57	82925	58	13	33	12	43
TMR_00686	tmRNA links to Rfam database...	0.68	0.67	0.69	72	71148	33	11	22	0	36
TMR_00687	tmRNA links to Rfam database...	0.72	0.68	0.75	76	71530	25	9	16	0	35
TMR_00696	tmRNA links to Rfam database...	0.51	0.47	0.55	54	84980	55	7	37	11	60
TMR_00698	tmRNA links to Rfam database...	0.55	0.50	0.60	52	63104	37	3	31	3	52
TMR_00699	tmRNA links to Rfam database...	0.80	0.75	0.85	76	67072	13	3	10	0	26
TMR_00702	tmRNA links to Rfam database...	0.77	0.71	0.84	71	67076	14	4	10	0	29
TMR_00703	tmRNA links to Rfam database...	0.84	0.76	0.94	75	67448	5	1	4	0	24
TMR_00706	tmRNA links to Rfam database...	0.61	0.52	0.70	54	66353	23	3	20	0	49
TMR_00711	tmRNA links to Rfam database...	0.45	0.44	0.46	43	67802	53	11	40	2	55
TMR_00712	tmRNA links to Rfam database...	0.61	0.57	0.66	62	78512	40	1	31	8	47
TMR_00716	tmRNA links to Rfam database...	0.60	0.55	0.65	55	62751	33	1	28	4	45

^top

Performance of McQFold - scored lower in this pairwise comparison

1. Total counts & total scores for McQFold

Total Base Pair Counts
Total TP	27724
Total TN	43339185
Total FP	36803
Total FP CONTRA	5520
Total FP INCONS	26908
Total FP COMP	4375
Total FN	35151

Total Scores
MCC	0.450
Average MCC ± 95% Confidence Intervals	0.452 ± 0.013
Sensitivity	0.441
Positive Predictive Value	0.461
Nr of predictions	610

^top

2. Individual counts for McQFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.78	0.73	0.82	55	34124	17	7	5	5	20
ASE_00002	RNaseP_arch links to Rfam database...	0.80	0.75	0.86	55	35447	12	4	5	3	18
ASE_00004	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	47	47805	48	9	34	5	50
ASE_00005	RNaseP_bact_a links to Rfam database...	0.52	0.46	0.59	54	57878	40	0	38	2	63
ASE_00006	RNaseP_bact_a links to Rfam database...	0.35	0.34	0.36	32	47498	60	6	50	4	61
ASE_00007	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	43	59591	55	2	49	4	67
ASE_00009	RNaseP_arch links to Rfam database...	0.67	0.64	0.70	43	26045	18	3	15	0	24
ASE_00012	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	48	73816	61	3	53	5	75
ASE_00014	RNaseP_arch links to Rfam database...	0.47	0.47	0.48	50	54180	56	9	46	1	56
ASE_00017	RNaseP_nuc links to Rfam database...	0.18	0.20	0.17	13	50963	78	25	39	14	51
ASE_00018	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	68	80482	52	2	49	1	66
ASE_00020	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.48	59	73797	64	9	55	0	67
ASE_00021	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.67	86	104068	47	2	40	5	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.60	0.56	0.65	70	82920	45	5	33	7	54
ASE_00023	RNaseP_bact_a links to Rfam database...	0.57	0.57	0.58	72	84131	57	6	46	5	55
ASE_00025	RNaseP_nuc links to Rfam database...	0.36	0.37	0.35	26	78531	92	6	43	43	45
ASE_00026	RNaseP_bact_a links to Rfam database...	0.34	0.31	0.38	34	59595	58	7	49	2	76
ASE_00028	RNaseP_bact_b links to Rfam database...	0.56	0.54	0.59	68	84550	50	11	37	2	58
ASE_00029	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	60	82924	48	3	41	4	62
ASE_00030	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.62	81	85360	51	6	44	1	64
ASE_00031	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	63	86627	56	5	41	10	63
ASE_00032	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	69	80093	39	12	26	1	49
ASE_00033	RNaseP_bact_a links to Rfam database...	0.38	0.34	0.42	41	64883	57	3	53	1	80
ASE_00035	RNaseP_bact_a links to Rfam database...	0.29	0.27	0.32	32	70401	71	9	58	4	86
ASE_00036	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.50	60	75736	64	8	51	5	72
ASE_00037	RNaseP_bact_a links to Rfam database...	0.42	0.38	0.46	42	59248	50	5	45	0	68
ASE_00038	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	39	53538	53	3	48	2	62
ASE_00040	RNaseP_bact_a links to Rfam database...	0.27	0.26	0.29	34	78886	88	9	74	5	99
ASE_00041	RNaseP_bact_a links to Rfam database...	0.46	0.43	0.51	46	57539	48	6	39	3	62
ASE_00042	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.60	77	89972	53	4	47	2	68
ASE_00044	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	80	54515	25	4	16	5	25
ASE_00046	RNaseP_bact_a links to Rfam database...	0.57	0.51	0.63	53	50319	32	3	28	1	50
ASE_00047	RNaseP_bact_a links to Rfam database...	0.46	0.42	0.50	54	74198	54	3	50	1	76
ASE_00052	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	47	61323	59	9	46	4	65
ASE_00053	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	73	79274	62	9	45	8	60
ASE_00056	-	0.43	0.43	0.42	31	30803	47	5	37	5	41
ASE_00057	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.58	70	82095	57	13	37	7	64
ASE_00064	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.51	44	45364	46	5	38	3	45
ASE_00066	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.39	41	72286	64	3	60	1	89
ASE_00068	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	51	37613	16	2	9	5	34
ASE_00069	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	70	82902	60	6	50	4	70
ASE_00074	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.44	48	67786	62	3	59	0	71
ASE_00075	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.57	74	108681	62	4	52	6	88
ASE_00076	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.56	56	68165	46	2	42	2	62
ASE_00077	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.45	34	45075	47	5	36	6	52
ASE_00078	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.58	43	42997	38	2	29	7	40
ASE_00079	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	52	55523	39	5	31	3	48
ASE_00080	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.35	37	71524	71	6	64	1	86
ASE_00081	RNaseP_bact_a links to Rfam database...	0.31	0.29	0.34	28	49688	56	5	49	2	69
ASE_00082	RNaseP_bact_a links to Rfam database...	0.38	0.36	0.40	42	70396	73	2	60	11	74
ASE_00083	RNaseP_bact_a links to Rfam database...	0.25	0.25	0.26	27	62379	75	6	69	0	83
ASE_00084	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.64	56	53540	36	2	30	4	43
ASE_00087	RNaseP_bact_a links to Rfam database...	0.49	0.42	0.57	61	88303	52	2	44	6	83
ASE_00089	-	0.21	0.20	0.22	16	31303	58	2	54	2	63
ASE_00090	RNaseP_bact_a links to Rfam database...	0.52	0.52	0.52	53	55510	52	6	42	4	48
ASE_00092	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.49	50	63444	55	6	46	3	63
ASE_00096	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.63	58	63454	35	2	32	1	57
ASE_00099	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.61	67	64510	44	4	39	1	53
ASE_00100	RNaseP_nuc links to Rfam database...	0.32	0.33	0.31	25	82134	111	7	49	55	51
ASE_00102	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	75	117705	78	5	70	3	91
ASE_00104	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	62	64148	52	8	43	1	57
ASE_00105	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.38	36	64165	64	2	58	4	75
ASE_00107	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	67	73039	48	1	46	1	60
ASE_00108	RNaseP_nuc links to Rfam database...	0.33	0.38	0.29	24	46888	72	19	40	13	39
ASE_00111	RNaseP_nuc links to Rfam database...	0.34	0.42	0.27	24	49998	74	33	31	10	33
ASE_00112	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	81	75362	33	2	21	10	35
ASE_00115	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.64	58	54525	40	4	28	8	43
ASE_00116	RNaseP_arch links to Rfam database...	0.52	0.50	0.54	33	31565	32	3	25	4	33
ASE_00118	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.40	38	60632	60	3	53	4	64
ASE_00119	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.86	87	62734	14	2	12	0	21
ASE_00120	RNaseP_arch links to Rfam database...	0.47	0.46	0.49	43	46883	45	4	41	0	51
ASE_00121	RNaseP_arch links to Rfam database...	0.47	0.46	0.48	42	45063	47	7	38	2	50
ASE_00122	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	59	43284	25	1	21	3	29
ASE_00123	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.47	34	38430	45	0	39	6	51
ASE_00125	RNaseP_bact_a links to Rfam database...	0.43	0.38	0.49	33	39272	38	2	33	3	55
ASE_00126	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	42	40396	33	3	29	1	40
ASE_00128	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.48	39	53219	47	3	40	4	61
ASE_00129	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.62	66	62729	42	3	37	2	45
ASE_00131	RNaseP_bact_a links to Rfam database...	0.37	0.33	0.42	28	39274	43	3	35	5	57
ASE_00132	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.71	57	50323	24	4	19	1	38
ASE_00134	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.35	30	50317	57	7	49	1	65
ASE_00135	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.31	31	63090	74	3	66	5	78
ASE_00136	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	59	48122	32	1	23	8	33
ASE_00137	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	51	48423	45	5	37	3	47
ASE_00138	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.63	41	40405	25	4	20	1	40
ASE_00139	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.58	54	54192	42	1	38	3	50
ASE_00140	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.57	61	70769	47	7	39	1	64
ASE_00142	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	69	67048	47	5	39	3	53
ASE_00145	RNaseP_arch links to Rfam database...	0.52	0.50	0.54	56	70022	50	2	45	3	55
ASE_00146	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	61	70770	48	1	44	3	63
ASE_00148	RNaseP_arch links to Rfam database...	0.64	0.62	0.66	96	112430	49	4	45	0	58
ASE_00151	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	48	51920	39	9	26	4	50
ASE_00153	RNaseP_nuc links to Rfam database...	0.51	0.53	0.49	39	57550	72	9	32	31	34
ASE_00154	RNaseP_arch links to Rfam database...	0.62	0.61	0.64	65	65239	37	1	36	0	42
ASE_00155	RNaseP_arch links to Rfam database...	0.59	0.56	0.62	80	93398	54	3	47	4	62
ASE_00163	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.42	37	53213	57	4	47	6	56
ASE_00165	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.42	39	52882	56	6	48	2	62
ASE_00168	RNaseP_nuc links to Rfam database...	0.32	0.38	0.28	24	60640	89	18	44	27	40
ASE_00169	RNaseP_bact_a links to Rfam database...	0.43	0.38	0.48	41	57205	47	2	43	2	66
ASE_00170	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.74	64	48742	24	2	20	2	29
ASE_00171	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.55	47	48431	38	3	35	0	47
ASE_00172	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.54	50	58903	50	5	38	7	56
ASE_00174	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.46	45	60978	53	5	47	1	64
ASE_00175	RNaseP_bact_a links to Rfam database...	0.22	0.21	0.23	23	59931	80	5	72	3	84
ASE_00176	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	65	59940	30	4	22	4	45
ASE_00179	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	44	44174	36	8	27	1	40
ASE_00180	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.42	41	51263	60	4	52	4	59
ASE_00181	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.53	57	57522	51	4	47	0	49
ASE_00182	RNaseP_bact_a links to Rfam database...	0.45	0.40	0.50	55	84145	57	2	53	2	81
ASE_00183	RNaseP_bact_a links to Rfam database...	0.67	0.63	0.71	71	61325	36	0	29	7	42
ASE_00184	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	52	54519	46	8	36	2	50
ASE_00185	RNaseP_bact_a links to Rfam database...	0.29	0.28	0.31	36	73419	81	14	67	0	92
ASE_00186	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	67	78889	56	3	44	9	65
ASE_00187	RNaseP_arch links to Rfam database...	0.51	0.48	0.56	55	68536	48	3	41	4	60
ASE_00189	RNaseP_bact_b links to Rfam database...	0.54	0.54	0.55	55	63090	47	7	38	2	47
ASE_00190	RNaseP_bact_b links to Rfam database...	0.55	0.52	0.57	47	45369	40	2	33	5	43
ASE_00192	RNaseP_bact_b links to Rfam database...	0.47	0.45	0.49	60	84543	68	10	53	5	73
ASE_00194	RNaseP_bact_b links to Rfam database...	0.40	0.39	0.42	47	73423	67	15	51	1	72
ASE_00195	-	0.61	0.58	0.64	77	86200	46	8	35	3	56
ASE_00196	RNaseP_arch links to Rfam database...	0.78	0.75	0.81	56	31557	16	2	11	3	19
ASE_00197	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.45	56	89129	76	1	67	8	89
ASE_00198	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	47	52564	44	2	37	5	55
ASE_00203	RNaseP_bact_a links to Rfam database...	0.54	0.55	0.53	53	46565	51	4	43	4	43
ASE_00204	RNaseP_bact_b links to Rfam database...	0.53	0.49	0.58	55	67801	46	7	33	6	57
ASE_00205	RNaseP_arch links to Rfam database...	0.52	0.52	0.53	47	45967	45	10	32	3	43
ASE_00209	RNaseP_arch links to Rfam database...	0.62	0.58	0.66	51	42994	26	4	22	0	37
ASE_00210	RNaseP_arch links to Rfam database...	0.57	0.55	0.58	36	27199	28	6	20	2	29
ASE_00212	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.46	59	93832	80	3	67	10	89
ASE_00213	RNaseP_arch links to Rfam database...	0.71	0.70	0.73	46	27198	18	4	13	1	20
ASE_00214	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	65	56187	35	2	26	7	38
ASE_00215	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	28	48429	60	7	52	1	71
ASE_00216	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.67	51	39264	26	7	18	1	31
ASE_00217	RNaseP_bact_a links to Rfam database...	0.21	0.19	0.25	17	40401	54	6	46	2	73
ASE_00221	RNaseP_bact_a links to Rfam database...	0.32	0.29	0.35	34	64522	65	3	61	1	83
ASE_00222	RNaseP_arch links to Rfam database...	0.52	0.50	0.55	78	111958	65	5	60	0	79
ASE_00227	RNaseP_bact_a links to Rfam database...	0.32	0.29	0.36	38	78898	67	3	64	0	95
ASE_00228	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.40	32	46890	50	11	38	1	54
ASE_00229	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.52	46	42398	44	6	36	2	41
ASE_00231	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.67	58	47808	33	4	25	4	38
ASE_00232	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.69	59	38418	29	8	18	3	25
ASE_00234	RNaseP_bact_a links to Rfam database...	0.31	0.28	0.34	36	75360	71	9	61	1	93
ASE_00237	RNaseP_nuc links to Rfam database...	0.11	0.13	0.09	7	45676	81	21	49	11	49
ASE_00238	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.51	50	64163	50	2	46	2	64
ASE_00240	RNaseP_bact_a links to Rfam database...	0.26	0.26	0.27	24	46575	68	3	63	2	69
ASE_00241	RNaseP_bact_a links to Rfam database...	0.20	0.18	0.23	16	43886	55	3	51	1	71
ASE_00242	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	66	60976	34	3	30	1	46
ASE_00246	RNaseP_nuc links to Rfam database...	0.29	0.28	0.30	19	48141	65	6	39	20	48
ASE_00247	RNaseP_nuc links to Rfam database...	0.60	0.63	0.57	40	54215	63	11	19	33	24
ASE_00248	RNaseP_bact_a links to Rfam database...	0.19	0.18	0.20	20	62382	81	6	73	2	94
ASE_00250	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.64	75	78886	49	2	40	7	56
ASE_00252	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.51	76	115292	77	4	68	5	92
ASE_00254	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.40	30	36781	48	3	42	3	52
ASE_00255	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	69	74572	54	4	46	4	61
ASE_00257	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.53	47	50951	49	3	39	7	50
ASE_00259	RNaseP_bact_a links to Rfam database...	0.44	0.39	0.50	47	73059	50	5	42	3	74
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.65	71	70390	40	4	35	1	49
ASE_00264	RNaseP_nuc links to Rfam database...	0.43	0.43	0.44	43	49043	59	4	51	4	57
ASE_00267	RNaseP_bact_a links to Rfam database...	0.21	0.19	0.23	17	45075	63	8	50	5	71
ASE_00270	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.49	54	72279	57	5	52	0	74
ASE_00274	RNaseP_bact_a links to Rfam database...	0.49	0.44	0.55	45	55529	38	5	32	1	58
ASE_00277	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.40	34	48121	50	17	33	0	57
ASE_00279	RNaseP_bact_a links to Rfam database...	0.16	0.15	0.17	15	53215	73	2	69	2	86
ASE_00280	RNaseP_bact_a links to Rfam database...	0.40	0.40	0.41	39	51908	60	9	47	4	59
ASE_00281	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.84	58	44482	17	0	11	6	30
ASE_00282	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.60	64	77708	50	7	36	7	63
ASE_00283	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.55	56	61675	47	3	42	2	51
ASE_00284	RNaseP_bact_a links to Rfam database...	0.21	0.20	0.22	22	58211	82	8	70	4	86
ASE_00285	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	63	68895	53	2	46	5	59
ASE_00286	RNaseP_bact_a links to Rfam database...	0.38	0.35	0.42	32	46589	45	4	40	1	60
ASE_00287	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.30	28	54852	67	9	57	1	75
ASE_00288	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	56	45984	22	0	16	6	37
ASE_00289	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	102	100895	33	3	25	5	55
ASE_00291	-	0.46	0.46	0.47	43	48425	50	9	39	2	51
ASE_00292	RNaseP_bact_a links to Rfam database...	0.42	0.38	0.48	52	81701	58	3	54	1	86
ASE_00294	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.45	70	114326	87	5	80	2	101
ASE_00295	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	54	73816	53	6	44	3	77
ASE_00296	RNaseP_bact_a links to Rfam database...	0.15	0.14	0.17	21	91680	105	6	99	0	124
ASE_00297	RNaseP_bact_a links to Rfam database...	0.34	0.33	0.36	32	52887	59	8	48	3	66
ASE_00298	RNaseP_bact_a links to Rfam database...	0.21	0.21	0.22	24	67418	87	14	72	1	89
ASE_00299	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.51	45	49366	50	7	37	6	55
ASE_00313	RNaseP_nuc links to Rfam database...	0.60	0.57	0.62	51	62399	57	4	27	26	38
ASE_00316	RNaseP_nuc links to Rfam database...	0.45	0.48	0.42	47	107767	88	16	50	22	51
ASE_00318	RNaseP_bact_b links to Rfam database...	0.64	0.62	0.66	73	80090	41	10	27	4	45
ASE_00327	RNaseP_nuc links to Rfam database...	0.78	0.75	0.82	67	57209	33	3	12	18	22
ASE_00328	RNaseP_bact_b links to Rfam database...	0.61	0.60	0.63	67	72665	47	2	37	8	45
ASE_00330	RNaseP_nuc links to Rfam database...	0.64	0.67	0.63	60	56184	52	10	26	16	30
ASE_00332	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.43	55	81683	75	3	69	3	83
ASE_00335	RNaseP_bact_b links to Rfam database...	0.62	0.58	0.68	67	75367	37	5	27	5	49
ASE_00337	RNaseP_nuc links to Rfam database...	0.54	0.56	0.52	40	39263	49	5	32	12	31
ASE_00338	RNaseP_nuc links to Rfam database...	0.44	0.43	0.45	42	66336	67	6	46	15	56
ASE_00339	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.51	59	80085	64	7	49	8	60
ASE_00340	RNaseP_bact_a links to Rfam database...	0.34	0.35	0.33	30	45965	64	10	51	3	55
ASE_00342	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.73	73	62381	29	2	25	2	42
ASE_00343	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.69	78	83323	53	7	28	18	35
ASE_00346	RNaseP_arch links to Rfam database...	0.38	0.36	0.41	35	48120	53	4	46	3	62
ASE_00353	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.62	64	57867	40	2	37	1	43
ASE_00359	RNaseP_arch links to Rfam database...	0.11	0.10	0.12	8	42711	62	2	57	3	72
ASE_00360	RNaseP_arch links to Rfam database...	0.40	0.37	0.44	24	29348	31	3	28	0	41
ASE_00361	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.47	51	75358	59	8	49	2	76
ASE_00362	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	48	48114	45	4	39	2	43
ASE_00363	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	45	51272	50	5	38	7	49
ASE_00364	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	54	54193	39	3	35	1	51
ASE_00366	RNaseP_bact_a links to Rfam database...	0.40	0.40	0.40	39	58555	60	10	49	1	59
ASE_00367	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	37	42988	54	2	44	8	49
ASE_00369	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	59	55846	42	6	34	2	48
ASE_00370	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.47	34	41832	40	6	33	1	50
ASE_00372	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	55	51908	43	7	33	3	45
ASE_00374	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.56	49	44762	39	6	33	0	39
ASE_00375	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.61	56	60286	41	2	34	5	54
ASE_00376	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	54	56863	37	4	32	1	51
ASE_00377	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	76	57536	23	2	16	5	31
ASE_00379	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.49	39	45976	42	7	34	1	50
ASE_00380	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.46	41	54857	51	1	47	3	58
ASE_00382	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	57	41832	18	5	11	2	27
ASE_00383	RNaseP_bact_a links to Rfam database...	0.39	0.36	0.43	38	54526	51	3	48	0	67
ASE_00384	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.35	28	48435	62	3	50	9	64
ASE_00385	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.61	45	41831	31	10	19	2	36
ASE_00386	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.60	54	50313	38	7	29	2	42
ASE_00387	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.50	50	55845	53	5	45	3	54
ASE_00388	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	44	45671	48	1	37	10	45
ASE_00390	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	43	42117	46	1	34	11	42
ASE_00393	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.41	32	47816	53	2	45	6	61
ASE_00394	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	51	46884	41	2	34	5	42
ASE_00395	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.76	56	41542	28	1	17	10	28
ASE_00396	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.48	38	41536	46	8	34	4	45
ASE_00397	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	49	54526	41	4	36	1	56
ASE_00398	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.40	39	55847	61	6	53	2	65
ASE_00400	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.54	56	57867	48	7	40	1	50
ASE_00401	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	65	76912	53	7	44	2	61
ASE_00402	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.64	47	42412	29	7	20	2	38
ASE_00403	RNaseP_bact_a links to Rfam database...	0.24	0.22	0.27	24	55855	70	4	62	4	83
ASE_00404	RNaseP_bact_a links to Rfam database...	0.17	0.16	0.18	14	42992	70	4	61	5	71
ASE_00406	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.57	51	48739	49	2	36	11	43
ASE_00408	-	0.42	0.39	0.46	28	32324	39	3	30	6	43
ASE_00409	-	0.30	0.29	0.32	24	40965	57	6	46	5	59
ASE_00411	RNaseP_bact_a links to Rfam database...	0.27	0.27	0.27	24	49367	65	7	57	1	65
ASE_00412	RNaseP_bact_a links to Rfam database...	0.26	0.25	0.27	26	58215	71	9	61	1	79
ASE_00413	RNaseP_bact_a links to Rfam database...	0.48	0.48	0.49	39	44471	45	1	40	4	42
ASE_00414	RNaseP_bact_a links to Rfam database...	0.24	0.23	0.26	22	46276	65	0	62	3	73
ASE_00415	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.65	61	54852	38	5	28	5	42
ASE_00416	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	63	77304	57	5	49	3	64
ASE_00417	RNaseP_arch links to Rfam database...	0.36	0.37	0.36	37	54512	68	9	57	2	63
ASE_00418	RNaseP_arch links to Rfam database...	0.12	0.12	0.12	9	38703	71	10	59	2	66
ASE_00419	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.78	73	54853	22	2	18	2	30
ASE_00422	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.65	57	46883	38	3	28	7	37
ASE_00423	RNaseP_bact_a links to Rfam database...	0.36	0.35	0.38	38	56853	62	6	56	0	71
ASE_00426	RNaseP_bact_a links to Rfam database...	0.50	0.51	0.50	55	60965	55	10	45	0	53
ASE_00428	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	64	76523	52	6	43	3	61
ASE_00429	-	0.64	0.59	0.68	39	28146	21	3	15	3	27
ASE_00430	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.67	60	46881	36	1	29	6	37
ASE_00431	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.64	49	46284	34	1	26	7	46
ASE_00434	RNaseP_bact_b links to Rfam database...	0.78	0.71	0.85	78	68173	28	1	13	14	32
ASE_00437	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.48	57	79283	62	1	60	1	78
ASE_00438	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	45	65968	53	1	52	0	71
ASE_00441	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	73	64171	21	6	11	4	39
ASE_00447	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.75	75	60278	31	4	21	6	41
ASE_00448	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.40	38	64167	62	5	51	6	74
ASE_00451	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.40	44	70766	67	2	64	1	81
CRW_00004	-	0.67	0.69	0.65	91	154150	77	9	40	28	40
CRW_00005	-	0.59	0.58	0.59	77	137945	75	6	47	22	55
CRW_00007	-	0.45	0.47	0.43	62	144847	96	21	61	14	71
CRW_00009	-	0.46	0.47	0.46	65	137933	94	12	65	17	73
CRW_00010	-	0.57	0.58	0.57	73	102703	64	14	41	9	53
CRW_00011	-	0.65	0.67	0.64	92	118198	57	9	42	6	46
CRW_00012	-	0.26	0.27	0.25	38	147000	122	27	88	7	103
CRW_00013	Intron_gpI links to Rfam database...	0.10	0.10	0.11	11	103641	107	9	79	19	104
CRW_00014	-	0.48	0.48	0.48	59	103617	70	12	52	6	64
CRW_00016	Intron_gpI links to Rfam database...	0.66	0.61	0.72	73	77320	38	5	23	10	47
CRW_00017	-	0.27	0.29	0.25	26	92131	104	22	56	26	65
CRW_00018	-	0.27	0.31	0.24	37	182556	138	39	78	21	84
CRW_00019	-	0.69	0.67	0.72	92	127637	57	9	27	21	45
CRW_00423	-	0.15	0.14	0.15	27	242379	163	24	126	13	162
CRW_00429	-	0.19	0.18	0.20	42	306725	171	21	148	2	191
CRW_00605	-	0.75	0.74	0.76	52	183853	112	1	15	96	18
CRW_00608	-	0.72	0.67	0.77	53	35709	16	1	15	0	26
CRW_00610	Intron_gpI links to Rfam database...	0.50	0.48	0.51	39	36239	38	6	31	1	42
CRW_00611	-	0.76	0.73	0.80	55	31306	21	4	10	7	20
CRW_00612	-	0.52	0.52	0.53	48	270390	161	1	41	119	45
CRW_00613	Intron_gpI links to Rfam database...	0.81	0.73	0.89	57	34916	15	0	7	8	21
CRW_00614	Intron_gpI links to Rfam database...	0.07	0.09	0.06	5	121689	132	26	51	55	52
CRW_00618	Intron_gpI links to Rfam database...	0.37	0.39	0.34	24	56210	60	15	31	14	37
CRW_00619	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	164963	138	7	55	76	73
CRW_00620	Intron_gpI links to Rfam database...	0.19	0.21	0.18	13	150901	128	14	47	67	50
CRW_00621	Intron_gpI links to Rfam database...	0.28	0.25	0.30	18	153121	121	12	30	79	53
CRW_00623	Intron_gpI links to Rfam database...	0.12	0.13	0.11	11	129696	122	21	67	34	72
CRW_00626	-	0.61	0.64	0.59	67	100911	62	9	38	15	37
CRW_00629	-	0.47	0.45	0.48	55	91264	60	11	48	1	67
CRW_00632	-	0.81	0.77	0.84	99	82910	24	7	12	5	29
CRW_00633	Intron_gpI links to Rfam database...	0.74	0.72	0.77	76	63447	26	8	15	3	30
CRW_00634	Intron_gpI links to Rfam database...	0.44	0.41	0.47	39	64537	48	18	26	4	55
CRW_00635	-	0.36	0.36	0.36	49	109142	90	15	72	3	88
CRW_00636	-	0.38	0.37	0.40	53	114826	84	18	63	3	90
CRW_00637	-	0.40	0.40	0.40	63	133746	97	9	85	3	95
CRW_00639	-	0.35	0.36	0.34	50	126611	99	24	71	4	88
CRW_00641	-	0.60	0.59	0.60	45	39828	38	6	24	8	31
CRW_00642	-	0.37	0.42	0.34	27	47198	62	15	38	9	38
CRW_00643	-	0.37	0.42	0.34	51	123104	111	29	72	10	71
CRW_00645	-	0.42	0.42	0.43	28	35446	45	10	27	8	39
CRW_00646	-	0.51	0.53	0.49	34	34910	38	7	29	2	30
CRW_00648	-	0.45	0.46	0.44	68	137920	95	11	76	8	80
CRW_00649	-	0.52	0.53	0.51	66	204350	127	9	55	63	58
CRW_00650	-	0.51	0.51	0.51	72	112908	74	10	60	4	70
CRW_00651	-	0.58	0.60	0.55	73	99996	65	11	48	6	48
CRW_00652	-	0.33	0.36	0.30	47	132200	116	24	84	8	83
CRW_00653	-	0.71	0.69	0.73	93	94703	37	2	32	3	41
CRW_00654	-	0.76	0.71	0.81	88	78101	25	4	17	4	36
CRW_00655	-	0.65	0.62	0.69	77	89141	36	7	28	1	47
CRW_00656	-	0.40	0.38	0.42	49	90407	75	10	59	6	80
CRW_00657	-	0.69	0.70	0.68	95	105890	50	7	38	5	41
CRW_00658	-	0.41	0.40	0.41	41	74592	58	12	46	0	61
CRW_00659	-	0.45	0.48	0.43	29	32317	48	8	31	9	32
CRW_00660	-	0.53	0.53	0.52	32	22094	30	5	24	1	28
CRW_00661	-	0.09	0.10	0.08	5	24247	61	20	38	3	46
CRW_00662	-	0.13	0.14	0.12	9	28606	71	8	57	6	56
CRW_00663	-	0.19	0.20	0.18	12	26041	59	7	46	6	49
CRW_00664	-	0.37	0.38	0.36	30	53544	61	12	42	7	48
CRW_00665	-	0.00	0.00	0.00	0	23592	62	16	45	1	48
CRW_00666	-	0.38	0.37	0.39	47	96019	85	8	67	10	79
CRW_00668	-	0.51	0.51	0.51	77	163728	83	13	60	10	73
CRW_00669	-	0.48	0.48	0.49	57	97344	61	18	42	1	62
CRW_00670	Intron_gpI links to Rfam database...	0.54	0.53	0.55	63	70011	53	6	45	2	57
CRW_00671	Intron_gpI links to Rfam database...	0.66	0.59	0.74	69	62742	28	5	19	4	48
CRW_00672	Intron_gpI links to Rfam database...	0.52	0.50	0.56	55	72291	48	9	35	4	56
CRW_00673	-	0.63	0.67	0.59	70	100010	50	28	20	2	35
CRW_00674	Intron_gpI links to Rfam database...	0.43	0.42	0.44	52	83319	69	14	51	4	72
CRW_00676	Intron_gpI links to Rfam database...	0.30	0.30	0.31	35	93414	85	9	70	6	80
CRW_00677	-	0.57	0.60	0.55	63	71895	55	14	38	3	42
CRW_00679	-	0.38	0.39	0.38	42	76525	71	18	51	2	65
CRW_00681	-	0.28	0.29	0.26	33	112925	97	30	62	5	79
CRW_00685	-	0.40	0.43	0.38	46	156958	99	26	50	23	60
CRW_00686	-	0.36	0.33	0.39	41	95162	76	4	59	13	84
CRW_00687	-	0.54	0.56	0.51	37	28608	37	8	27	2	29
CRW_00688	-	0.61	0.60	0.63	34	21891	22	0	20	2	23
CRW_00689	-	0.43	0.43	0.44	33	33595	47	7	35	5	44
CRW_00690	-	0.66	0.67	0.65	46	33340	29	9	16	4	23
CRW_00691	-	0.71	0.72	0.70	48	27192	25	4	17	4	19
CRW_00692	Intron_gpI links to Rfam database...	0.26	0.27	0.25	24	68538	77	23	50	4	66
CRW_00693	-	0.69	0.70	0.67	86	89124	51	9	34	8	36
CRW_00694	-	0.60	0.61	0.60	74	85782	52	9	40	3	48
CRW_00699	-	0.27	0.25	0.28	32	91692	82	12	70	0	94
CRW_00700	-	0.68	0.69	0.68	102	180750	71	14	35	22	45
CRW_00703	-	0.25	0.27	0.23	18	40390	66	14	48	4	48
CRW_00714	-	0.32	0.36	0.29	39	186220	127	28	68	31	68
CRW_00715	-	0.53	0.53	0.54	55	69276	49	6	41	2	49
CRW_00716	-	0.59	0.58	0.60	52	193667	101	9	25	67	37
CRW_00717	-	0.42	0.39	0.45	58	153607	87	13	57	17	90
CRW_00718	-	0.31	0.28	0.34	54	189878	115	11	93	11	137
CRW_00719	-	0.54	0.54	0.53	49	230089	113	11	32	70	42
CRW_00720	-	0.29	0.34	0.25	31	208211	121	25	68	28	60
CRW_00721	-	0.37	0.38	0.36	26	58581	61	14	32	15	42
CRW_00764	-	0.05	0.05	0.05	9	252931	177	35	141	1	187
CRW_00775	-	0.07	0.07	0.07	14	314619	197	49	139	9	198
CRW_00815	-	0.31	0.33	0.30	52	159719	126	25	99	2	106
CRW_00816	-	0.37	0.38	0.36	49	143778	102	15	74	13	80
CRW_00820	-	0.47	0.46	0.49	66	136368	83	10	59	14	79
PDB_00072	-	0.30	0.31	0.30	65	148025	150	10	140	0	145
PDB_00078	-	0.68	0.63	0.73	73	49670	27	9	18	0	42
PDB_00079	-	0.48	0.44	0.53	62	121653	64	17	39	8	80
PDB_00278	-	0.61	0.57	0.65	41	24913	22	4	18	0	31
PDB_00403	-	0.53	0.52	0.54	79	124604	74	11	56	7	74
PDB_00423	-	0.55	0.50	0.61	37	26735	24	4	20	0	37
PDB_00701	-	0.11	0.11	0.12	12	45351	88	9	79	0	97
PDB_00747	-	0.57	0.48	0.68	38	24475	19	1	17	1	42
PDB_00827	Intron_gpI links to Rfam database...	0.68	0.59	0.79	48	26967	15	0	13	2	33
PDB_00917	-	0.60	0.57	0.64	54	35161	34	4	26	4	41
PDB_00919	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.59	50	44168	38	3	32	3	53
PDB_01129	-	0.40	0.39	0.41	28	35443	44	12	28	4	43
PDB_01157	-	0.08	0.08	0.09	8	49999	81	10	69	2	90
PDB_01166	-	0.61	0.58	0.64	123	181914	73	14	55	4	89
RFA_00597	Telomerase-vert links to Rfam database...	0.34	0.37	0.31	40	97776	101	20	67	14	69
RFA_00598	Telomerase-vert links to Rfam database...	0.35	0.36	0.35	36	84563	76	12	55	9	65
RFA_00599	Telomerase-vert links to Rfam database...	0.39	0.40	0.38	44	101359	92	13	59	20	67
RFA_00600	Telomerase-vert links to Rfam database...	0.18	0.21	0.16	21	120164	129	29	81	19	79
RFA_00601	Telomerase-vert links to Rfam database...	0.09	0.10	0.08	11	99104	129	18	102	9	103
RFA_00602	Telomerase-vert links to Rfam database...	0.41	0.44	0.39	51	101343	91	19	62	10	65
TMR_00007	tmRNA links to Rfam database...	0.34	0.32	0.36	35	61679	67	14	48	5	73
TMR_00008	tmRNA links to Rfam database...	0.36	0.36	0.37	38	65964	71	12	52	7	68
TMR_00010	tmRNA links to Rfam database...	0.35	0.35	0.35	34	57873	63	7	56	0	62
TMR_00012	tmRNA links to Rfam database...	0.31	0.31	0.32	25	64541	72	12	42	18	56
TMR_00014	tmRNA links to Rfam database...	0.66	0.64	0.69	70	68534	41	12	19	10	40
TMR_00017	tmRNA links to Rfam database...	0.25	0.24	0.26	24	67070	73	5	62	6	78
TMR_00018	tmRNA links to Rfam database...	0.56	0.59	0.54	54	64520	48	15	31	2	38
TMR_00028	tmRNA links to Rfam database...	0.52	0.51	0.53	49	62743	45	5	38	2	48
TMR_00030	tmRNA links to Rfam database...	0.23	0.23	0.23	25	75746	88	12	72	4	86
TMR_00034	tmRNA links to Rfam database...	0.60	0.60	0.61	66	59923	47	6	36	5	44
TMR_00035	tmRNA links to Rfam database...	0.57	0.60	0.55	59	67788	59	11	38	10	39
TMR_00036	tmRNA links to Rfam database...	0.49	0.51	0.47	52	90415	64	13	45	6	49
TMR_00038	tmRNA links to Rfam database...	0.28	0.28	0.29	31	71145	81	15	62	4	79
TMR_00042	tmRNA links to Rfam database...	0.16	0.15	0.16	15	62744	81	8	68	5	83
TMR_00046	tmRNA links to Rfam database...	0.28	0.29	0.26	28	62729	78	15	63	0	68
TMR_00047	tmRNA links to Rfam database...	0.29	0.33	0.25	19	48439	70	23	35	12	38
TMR_00048	tmRNA links to Rfam database...	0.31	0.33	0.30	31	64876	75	16	57	2	64
TMR_00049	tmRNA links to Rfam database...	0.52	0.52	0.52	45	63103	52	7	35	10	42
TMR_00051	tmRNA links to Rfam database...	0.56	0.54	0.59	51	65616	49	3	33	13	43
TMR_00055	tmRNA links to Rfam database...	0.27	0.26	0.29	30	78898	78	13	62	3	84
TMR_00057	tmRNA links to Rfam database...	0.34	0.38	0.30	30	73820	83	23	47	13	49
TMR_00061	tmRNA links to Rfam database...	0.19	0.19	0.20	19	59589	84	9	68	7	80
TMR_00062	tmRNA links to Rfam database...	0.72	0.69	0.74	72	78509	40	8	17	15	32
TMR_00064	tmRNA links to Rfam database...	0.45	0.45	0.46	46	76927	55	18	37	0	57
TMR_00065	tmRNA links to Rfam database...	0.50	0.48	0.53	51	76540	46	14	31	1	55
TMR_00067	tmRNA links to Rfam database...	0.38	0.39	0.38	44	82100	73	11	60	2	70
TMR_00073	tmRNA links to Rfam database...	0.40	0.38	0.42	45	65597	62	6	55	1	72
TMR_00076	tmRNA links to Rfam database...	0.37	0.38	0.37	38	70773	75	8	57	10	62
TMR_00080	tmRNA links to Rfam database...	0.45	0.46	0.44	44	70400	57	19	37	1	52
TMR_00081	tmRNA links to Rfam database...	0.55	0.50	0.62	53	67075	33	9	24	0	53
TMR_00082	tmRNA links to Rfam database...	0.50	0.49	0.52	47	67805	48	11	33	4	49
TMR_00083	tmRNA links to Rfam database...	0.37	0.37	0.37	39	68159	71	11	56	4	66
TMR_00092	tmRNA links to Rfam database...	0.46	0.50	0.42	50	67409	72	15	54	3	51
TMR_00093	tmRNA links to Rfam database...	0.23	0.24	0.23	24	64157	80	14	66	0	78
TMR_00096	tmRNA links to Rfam database...	0.26	0.26	0.27	26	64883	71	11	60	0	74
TMR_00101	tmRNA links to Rfam database...	0.48	0.47	0.50	50	64161	55	8	42	5	57
TMR_00102	tmRNA links to Rfam database...	0.46	0.47	0.45	47	64156	61	17	41	3	54
TMR_00103	tmRNA links to Rfam database...	0.67	0.67	0.67	72	64153	37	7	29	1	36
TMR_00104	-	0.17	0.19	0.15	13	66709	77	22	51	4	57
TMR_00106	tmRNA links to Rfam database...	0.41	0.40	0.42	48	89985	67	21	46	0	72
TMR_00109	tmRNA links to Rfam database...	0.40	0.37	0.45	45	88309	63	9	47	7	77
TMR_00111	tmRNA links to Rfam database...	0.49	0.47	0.52	57	90415	61	7	46	8	65
TMR_00116	tmRNA links to Rfam database...	0.62	0.60	0.65	62	64885	45	3	30	12	42
TMR_00117	tmRNA links to Rfam database...	0.64	0.62	0.66	73	80090	46	4	33	9	45
TMR_00118	tmRNA links to Rfam database...	0.34	0.33	0.35	39	81295	73	5	67	1	81
TMR_00119	tmRNA links to Rfam database...	0.31	0.31	0.32	32	71910	73	9	59	5	72
TMR_00123	tmRNA links to Rfam database...	0.26	0.25	0.27	25	66338	71	4	63	4	76
TMR_00124	tmRNA links to Rfam database...	0.49	0.49	0.49	48	70403	61	12	37	12	50
TMR_00125	tmRNA links to Rfam database...	0.63	0.62	0.65	61	64167	37	6	27	4	38
TMR_00127	tmRNA links to Rfam database...	0.65	0.64	0.67	62	62742	31	13	18	0	35
TMR_00128	tmRNA links to Rfam database...	0.44	0.44	0.44	42	60979	56	11	43	2	54
TMR_00131	tmRNA links to Rfam database...	0.46	0.44	0.47	44	64886	57	11	39	7	55
TMR_00135	tmRNA links to Rfam database...	0.75	0.70	0.80	69	62749	23	6	11	6	30
TMR_00136	tmRNA links to Rfam database...	0.28	0.30	0.27	30	74579	88	13	69	6	71
TMR_00137	tmRNA links to Rfam database...	0.39	0.36	0.43	32	61000	48	8	35	5	57
TMR_00139	tmRNA links to Rfam database...	0.65	0.68	0.62	62	62028	47	20	18	9	29
TMR_00140	tmRNA links to Rfam database...	0.62	0.59	0.66	59	73831	37	7	23	7	41
TMR_00142	tmRNA links to Rfam database...	0.54	0.53	0.55	54	70778	56	10	34	12	48
TMR_00143	tmRNA links to Rfam database...	0.49	0.48	0.52	49	64525	56	9	37	10	54
TMR_00144	tmRNA links to Rfam database...	0.37	0.36	0.39	37	74209	64	11	48	5	66
TMR_00146	tmRNA links to Rfam database...	0.84	0.71	1.00	30	32101	23	0	0	23	12
TMR_00150	tmRNA links to Rfam database...	0.46	0.50	0.43	21	43022	50	10	18	22	21
TMR_00152	tmRNA links to Rfam database...	0.31	0.30	0.32	35	81296	83	8	67	8	80
TMR_00155	tmRNA links to Rfam database...	0.56	0.53	0.59	55	61683	45	4	34	7	49
TMR_00156	tmRNA links to Rfam database...	0.24	0.24	0.24	23	60282	77	19	54	4	74
TMR_00158	tmRNA links to Rfam database...	0.51	0.49	0.52	49	60632	49	4	41	4	50
TMR_00159	tmRNA links to Rfam database...	0.19	0.21	0.19	19	62026	83	19	64	0	73
TMR_00160	tmRNA links to Rfam database...	0.37	0.37	0.37	35	64525	70	15	45	10	60
TMR_00164	tmRNA links to Rfam database...	0.54	0.52	0.56	55	66697	51	4	39	8	51
TMR_00165	tmRNA links to Rfam database...	0.49	0.48	0.51	47	61683	55	11	35	9	50
TMR_00166	tmRNA links to Rfam database...	0.27	0.27	0.28	27	61679	78	7	63	8	74
TMR_00168	tmRNA links to Rfam database...	0.79	0.79	0.80	90	60962	24	6	17	1	24
TMR_00173	tmRNA links to Rfam database...	0.34	0.40	0.29	17	42137	64	19	22	23	25
TMR_00179	tmRNA links to Rfam database...	0.42	0.42	0.41	41	67062	65	10	48	7	57
TMR_00180	tmRNA links to Rfam database...	0.38	0.37	0.39	37	67067	63	19	38	6	62
TMR_00182	tmRNA links to Rfam database...	0.10	0.10	0.11	10	66339	87	10	71	6	92
TMR_00183	tmRNA links to Rfam database...	0.22	0.22	0.22	23	63087	85	12	68	5	80
TMR_00184	tmRNA links to Rfam database...	0.40	0.41	0.40	42	63084	68	6	58	4	60
TMR_00193	tmRNA links to Rfam database...	0.19	0.20	0.18	16	59251	80	20	53	7	64
TMR_00194	tmRNA links to Rfam database...	0.41	0.40	0.42	37	62746	55	11	41	3	56
TMR_00196	tmRNA links to Rfam database...	0.42	0.38	0.46	37	60995	51	6	37	8	60
TMR_00199	tmRNA links to Rfam database...	0.27	0.25	0.28	23	62754	62	18	40	4	69
TMR_00200	-	0.40	0.40	0.41	30	41542	54	8	36	10	45
TMR_00204	tmRNA links to Rfam database...	0.51	0.47	0.55	46	60294	47	7	31	9	51
TMR_00207	tmRNA links to Rfam database...	0.25	0.24	0.25	25	72291	81	7	67	7	78
TMR_00223	tmRNA links to Rfam database...	0.45	0.43	0.48	41	64175	49	12	33	4	54
TMR_00224	tmRNA links to Rfam database...	0.40	0.39	0.41	39	64884	62	10	47	5	62
TMR_00226	tmRNA links to Rfam database...	0.48	0.48	0.49	50	69648	61	10	43	8	55
TMR_00227	tmRNA links to Rfam database...	0.44	0.46	0.43	46	70018	65	12	49	4	55
TMR_00228	tmRNA links to Rfam database...	0.31	0.32	0.30	35	88294	89	22	59	8	73
TMR_00234	tmRNA links to Rfam database...	0.36	0.32	0.41	33	58915	53	9	39	5	69
TMR_00238	tmRNA links to Rfam database...	0.33	0.36	0.31	36	84549	87	16	65	6	65
TMR_00239	tmRNA links to Rfam database...	0.60	0.63	0.58	60	61672	47	11	33	3	36
TMR_00240	tmRNA links to Rfam database...	0.53	0.54	0.52	46	63101	49	13	30	6	39
TMR_00246	-	0.52	0.50	0.55	17	78179	97	3	11	83	17
TMR_00248	tmRNA links to Rfam database...	0.16	0.18	0.13	7	54232	77	20	26	31	31
TMR_00257	tmRNA links to Rfam database...	0.24	0.22	0.25	22	67073	67	13	53	1	76
TMR_00259	tmRNA links to Rfam database...	0.60	0.57	0.63	59	67802	38	11	24	3	44
TMR_00261	tmRNA links to Rfam database...	0.41	0.41	0.42	41	66698	56	12	44	0	60
TMR_00262	tmRNA links to Rfam database...	0.44	0.46	0.42	48	74191	66	19	47	0	56
TMR_00271	tmRNA links to Rfam database...	0.44	0.45	0.44	41	64168	61	6	46	9	50
TMR_00274	tmRNA links to Rfam database...	0.26	0.27	0.25	28	66683	91	13	71	7	77
TMR_00278	tmRNA links to Rfam database...	0.44	0.45	0.42	46	67787	72	5	58	9	56
TMR_00279	tmRNA links to Rfam database...	0.46	0.48	0.45	45	68905	63	10	46	7	49
TMR_00280	tmRNA links to Rfam database...	0.48	0.49	0.48	49	65963	67	6	48	13	52
TMR_00283	tmRNA links to Rfam database...	0.51	0.53	0.49	51	65237	56	14	39	3	45
TMR_00289	tmRNA links to Rfam database...	0.41	0.41	0.42	40	67065	67	11	45	11	58
TMR_00290	tmRNA links to Rfam database...	0.38	0.36	0.41	33	64181	48	11	36	1	59
TMR_00296	tmRNA links to Rfam database...	0.22	0.23	0.21	23	68898	88	19	66	3	75
TMR_00298	tmRNA links to Rfam database...	0.40	0.42	0.39	42	68157	72	11	55	6	59
TMR_00300	tmRNA links to Rfam database...	0.64	0.60	0.68	67	70401	42	3	29	10	45
TMR_00301	tmRNA links to Rfam database...	0.28	0.26	0.29	25	82130	66	12	48	6	71
TMR_00302	tmRNA links to Rfam database...	0.52	0.55	0.48	52	77313	71	20	36	15	42
TMR_00305	tmRNA links to Rfam database...	0.49	0.47	0.52	48	60983	50	9	35	6	54
TMR_00306	tmRNA links to Rfam database...	0.29	0.29	0.29	31	64155	81	7	68	6	75
TMR_00310	tmRNA links to Rfam database...	0.61	0.59	0.63	58	63811	42	6	28	8	40
TMR_00317	tmRNA links to Rfam database...	0.60	0.61	0.59	62	68160	47	13	30	4	40
TMR_00331	tmRNA links to Rfam database...	0.30	0.33	0.28	27	66697	85	11	60	14	55
TMR_00332	tmRNA links to Rfam database...	0.51	0.48	0.55	48	67073	45	7	33	5	51
TMR_00334	tmRNA links to Rfam database...	0.56	0.54	0.58	55	66700	48	8	32	8	46
TMR_00337	tmRNA links to Rfam database...	0.60	0.58	0.62	69	82917	43	12	30	1	50
TMR_00340	tmRNA links to Rfam database...	0.47	0.46	0.49	37	64185	59	3	36	20	44
TMR_00341	tmRNA links to Rfam database...	0.29	0.30	0.28	28	63091	73	17	54	2	64
TMR_00343	tmRNA links to Rfam database...	0.39	0.39	0.39	41	64876	67	10	53	4	64
TMR_00345	tmRNA links to Rfam database...	0.54	0.54	0.53	56	63798	49	12	37	0	48
TMR_00346	tmRNA links to Rfam database...	0.57	0.54	0.60	51	64176	38	9	25	4	43
TMR_00348	tmRNA links to Rfam database...	0.54	0.49	0.60	49	77339	50	7	26	17	50
TMR_00352	tmRNA links to Rfam database...	0.14	0.16	0.12	12	95168	106	29	57	20	63
TMR_00353	tmRNA links to Rfam database...	0.53	0.54	0.51	57	84143	64	23	32	9	48
TMR_00357	tmRNA links to Rfam database...	0.57	0.62	0.53	57	82921	57	23	27	7	35
TMR_00358	tmRNA links to Rfam database...	0.46	0.47	0.44	47	74972	65	20	39	6	52
TMR_00361	-	0.34	0.38	0.32	27	93443	62	20	38	4	45
TMR_00366	tmRNA links to Rfam database...	0.50	0.51	0.50	51	67794	55	15	36	4	49
TMR_00372	tmRNA links to Rfam database...	0.49	0.48	0.50	46	70408	56	10	36	10	50
TMR_00374	tmRNA links to Rfam database...	0.21	0.23	0.20	21	81706	88	18	65	5	71
TMR_00375	tmRNA links to Rfam database...	0.48	0.51	0.45	50	73425	71	17	44	10	48
TMR_00376	tmRNA links to Rfam database...	0.34	0.37	0.32	35	74582	81	20	54	7	60
TMR_00378	tmRNA links to Rfam database...	0.43	0.44	0.42	43	67793	60	13	47	0	54
TMR_00383	tmRNA links to Rfam database...	0.29	0.31	0.28	31	66683	83	12	69	2	69
TMR_00384	tmRNA links to Rfam database...	0.20	0.19	0.20	21	65599	91	7	76	8	87
TMR_00393	tmRNA links to Rfam database...	0.52	0.58	0.46	31	53234	61	17	19	25	22
TMR_00395	tmRNA links to Rfam database...	0.44	0.42	0.47	46	64522	56	8	44	4	63
TMR_00398	tmRNA links to Rfam database...	0.40	0.39	0.42	41	65244	60	6	50	4	65
TMR_00399	tmRNA links to Rfam database...	0.26	0.27	0.25	25	64879	79	17	59	3	69
TMR_00404	tmRNA links to Rfam database...	0.42	0.46	0.39	42	67419	67	21	46	0	50
TMR_00408	tmRNA links to Rfam database...	0.38	0.40	0.36	35	65969	72	16	46	10	53
TMR_00409	tmRNA links to Rfam database...	0.57	0.59	0.55	27	68586	66	5	17	44	19
TMR_00411	tmRNA links to Rfam database...	0.40	0.39	0.41	34	60993	54	13	35	6	53
TMR_00415	tmRNA links to Rfam database...	0.31	0.32	0.31	32	67057	75	13	59	3	69
TMR_00419	tmRNA links to Rfam database...	0.63	0.63	0.63	70	81698	60	19	23	18	41
TMR_00422	tmRNA links to Rfam database...	0.59	0.58	0.60	53	67808	48	6	29	13	39
TMR_00423	tmRNA links to Rfam database...	0.12	0.14	0.11	10	63816	87	19	58	10	63
TMR_00427	tmRNA links to Rfam database...	0.33	0.31	0.36	30	67445	60	9	44	7	67
TMR_00429	tmRNA links to Rfam database...	0.58	0.60	0.57	65	74577	51	13	36	2	44
TMR_00430	tmRNA links to Rfam database...	0.45	0.44	0.47	48	82519	56	17	37	2	61
TMR_00431	tmRNA links to Rfam database...	0.63	0.62	0.64	34	51950	52	7	12	33	21
TMR_00432	tmRNA links to Rfam database...	0.31	0.33	0.30	34	79687	80	9	70	1	70
TMR_00433	tmRNA links to Rfam database...	0.17	0.17	0.17	18	80092	90	13	77	0	88
TMR_00439	tmRNA links to Rfam database...	0.41	0.45	0.38	45	68518	82	19	53	10	56
TMR_00441	tmRNA links to Rfam database...	0.14	0.16	0.12	13	62019	102	19	77	6	70
TMR_00443	tmRNA links to Rfam database...	0.52	0.48	0.56	50	67071	42	9	31	2	54
TMR_00448	tmRNA links to Rfam database...	0.59	0.57	0.61	52	62043	40	3	30	7	40
TMR_00451	tmRNA links to Rfam database...	0.21	0.22	0.20	20	63448	82	16	62	4	69
TMR_00457	tmRNA links to Rfam database...	0.43	0.44	0.42	45	78500	63	11	50	2	57
TMR_00458	tmRNA links to Rfam database...	0.37	0.34	0.40	32	63465	53	15	34	4	61
TMR_00460	tmRNA links to Rfam database...	0.43	0.42	0.44	44	79302	62	8	47	7	62
TMR_00465	tmRNA links to Rfam database...	0.32	0.32	0.32	30	64166	69	19	46	4	64
TMR_00469	tmRNA links to Rfam database...	0.35	0.34	0.35	34	64524	67	5	57	5	66
TMR_00472	tmRNA links to Rfam database...	0.23	0.24	0.23	23	64519	86	16	62	8	74
TMR_00478	tmRNA links to Rfam database...	0.19	0.19	0.18	19	71905	91	15	71	5	80
TMR_00498	tmRNA links to Rfam database...	0.44	0.44	0.44	44	68905	68	14	43	11	55
TMR_00499	tmRNA links to Rfam database...	0.35	0.37	0.33	37	64509	79	6	68	5	62
TMR_00501	tmRNA links to Rfam database...	0.44	0.46	0.42	42	62381	60	14	44	2	50
TMR_00502	tmRNA links to Rfam database...	0.36	0.37	0.36	34	75372	75	8	52	15	59
TMR_00503	tmRNA links to Rfam database...	0.17	0.16	0.18	18	67795	83	5	78	0	93
TMR_00519	tmRNA links to Rfam database...	0.25	0.25	0.24	24	63091	77	12	63	2	71
TMR_00520	tmRNA links to Rfam database...	0.35	0.33	0.37	33	63100	66	11	46	9	66
TMR_00522	tmRNA links to Rfam database...	0.37	0.36	0.39	35	63100	62	5	50	7	62
TMR_00528	tmRNA links to Rfam database...	0.46	0.44	0.48	43	63100	58	12	35	11	54
TMR_00540	tmRNA links to Rfam database...	0.10	0.11	0.11	11	73432	101	12	81	8	93
TMR_00541	tmRNA links to Rfam database...	0.31	0.30	0.32	32	61675	76	8	61	7	73
TMR_00544	tmRNA links to Rfam database...	0.36	0.34	0.37	37	89577	73	10	52	11	71
TMR_00547	tmRNA links to Rfam database...	0.45	0.44	0.46	44	65246	51	7	44	0	56
TMR_00553	tmRNA links to Rfam database...	0.49	0.49	0.49	40	48123	47	15	27	5	41
TMR_00559	tmRNA links to Rfam database...	0.35	0.33	0.37	33	62391	63	7	50	6	68
TMR_00560	tmRNA links to Rfam database...	0.33	0.31	0.37	30	60993	57	5	47	5	68
TMR_00562	tmRNA links to Rfam database...	0.25	0.26	0.24	27	72660	86	14	70	2	75
TMR_00563	tmRNA links to Rfam database...	0.59	0.59	0.59	61	75363	48	13	29	6	42
TMR_00566	tmRNA links to Rfam database...	0.38	0.37	0.39	37	60631	58	9	49	0	63
TMR_00568	tmRNA links to Rfam database...	0.35	0.33	0.37	33	60637	62	7	49	6	66
TMR_00570	tmRNA links to Rfam database...	0.62	0.58	0.67	56	60295	35	3	24	8	41
TMR_00571	tmRNA links to Rfam database...	0.43	0.41	0.45	41	60635	57	9	41	7	58
TMR_00576	tmRNA links to Rfam database...	0.59	0.58	0.60	59	60280	46	12	27	7	43
TMR_00579	tmRNA links to Rfam database...	0.17	0.19	0.16	17	80496	100	21	67	12	73
TMR_00580	tmRNA links to Rfam database...	0.46	0.43	0.49	43	60638	48	5	40	3	57
TMR_00581	tmRNA links to Rfam database...	0.51	0.50	0.53	49	62388	49	11	33	5	49
TMR_00584	tmRNA links to Rfam database...	0.58	0.55	0.61	53	60988	42	5	29	8	44
TMR_00586	tmRNA links to Rfam database...	0.42	0.39	0.44	38	60989	53	9	39	5	59
TMR_00587	tmRNA links to Rfam database...	0.83	0.83	0.83	83	61325	23	4	13	6	17
TMR_00588	tmRNA links to Rfam database...	0.42	0.43	0.41	43	77316	70	13	49	8	58
TMR_00594	tmRNA links to Rfam database...	0.31	0.31	0.31	32	79297	74	12	60	2	72
TMR_00596	tmRNA links to Rfam database...	0.35	0.34	0.36	32	78120	71	13	45	13	63
TMR_00599	tmRNA links to Rfam database...	0.30	0.35	0.25	25	63091	75	29	45	1	47
TMR_00600	tmRNA links to Rfam database...	0.15	0.15	0.15	17	79688	95	10	85	0	98
TMR_00601	tmRNA links to Rfam database...	0.79	0.71	0.88	30	58962	47	1	3	43	12
TMR_00603	tmRNA links to Rfam database...	0.63	0.72	0.54	31	60321	70	10	16	44	12
TMR_00604	tmRNA links to Rfam database...	0.69	0.70	0.68	78	62720	38	6	31	1	34
TMR_00605	tmRNA links to Rfam database...	0.53	0.53	0.53	57	74197	55	22	29	4	51
TMR_00606	tmRNA links to Rfam database...	0.53	0.52	0.54	56	68903	56	6	41	9	51
TMR_00609	tmRNA links to Rfam database...	0.73	0.73	0.73	83	63433	36	6	24	6	30
TMR_00610	tmRNA links to Rfam database...	0.67	0.65	0.68	68	62028	40	7	25	8	36
TMR_00611	tmRNA links to Rfam database...	0.76	0.78	0.74	80	61317	33	8	20	5	22
TMR_00612	tmRNA links to Rfam database...	0.50	0.53	0.47	55	60609	62	9	53	0	49
TMR_00614	tmRNA links to Rfam database...	0.60	0.58	0.63	60	60980	42	2	33	7	44
TMR_00615	tmRNA links to Rfam database...	0.49	0.47	0.51	45	63815	45	14	29	2	51
TMR_00616	tmRNA links to Rfam database...	0.26	0.26	0.26	26	67061	78	9	65	4	73
TMR_00617	tmRNA links to Rfam database...	0.39	0.43	0.36	25	34646	47	16	29	2	33
TMR_00623	tmRNA links to Rfam database...	0.50	0.47	0.53	51	61328	48	5	41	2	57
TMR_00624	tmRNA links to Rfam database...	0.73	0.72	0.73	78	62374	31	13	16	2	30
TMR_00625	tmRNA links to Rfam database...	0.32	0.34	0.31	36	78887	84	18	62	4	70
TMR_00626	tmRNA links to Rfam database...	0.43	0.43	0.43	47	67787	68	4	58	6	62
TMR_00680	tmRNA links to Rfam database...	0.25	0.26	0.25	26	67790	80	19	61	0	73
TMR_00681	tmRNA links to Rfam database...	0.48	0.47	0.49	46	65973	51	8	39	4	51
TMR_00683	tmRNA links to Rfam database...	0.26	0.27	0.26	27	82923	92	17	61	14	73
TMR_00686	tmRNA links to Rfam database...	0.33	0.34	0.32	37	71138	82	17	61	4	71
TMR_00687	tmRNA links to Rfam database...	0.25	0.25	0.24	28	71515	92	13	75	4	83
TMR_00696	tmRNA links to Rfam database...	0.47	0.44	0.50	50	84978	63	10	40	13	64
TMR_00698	tmRNA links to Rfam database...	0.16	0.16	0.16	17	63081	92	21	71	0	87
TMR_00699	tmRNA links to Rfam database...	0.41	0.41	0.41	42	67059	60	11	49	0	60
TMR_00702	tmRNA links to Rfam database...	0.25	0.26	0.25	26	67055	83	7	73	3	74
TMR_00703	tmRNA links to Rfam database...	0.38	0.37	0.40	37	67435	58	5	51	2	62
TMR_00706	tmRNA links to Rfam database...	0.44	0.41	0.47	42	66341	48	8	39	1	61
TMR_00711	tmRNA links to Rfam database...	0.55	0.56	0.53	55	67793	55	12	36	7	43
TMR_00712	tmRNA links to Rfam database...	0.27	0.28	0.26	30	78491	85	18	67	0	79
TMR_00716	tmRNA links to Rfam database...	0.12	0.12	0.13	12	62741	86	6	76	4	88

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of ContextFold - scored higher in this pairwise comparison

1. Total counts & total scores for ContextFold

2. Individual counts for ContextFold [ download as .csv ]

Performance of McQFold - scored lower in this pairwise comparison

1. Total counts & total scores for McQFold

2. Individual counts for McQFold [ download as .csv ]