CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	ContextFold		ProbKnot
MCC	0.718	>	0.522
Average MCC ± 95% Confidence Intervals	0.712 ± 0.015	>	0.521 ± 0.014
Sensitivity	0.677	>	0.518
Positive Predictive Value	0.763	>	0.527
Total TP	42560	>	32585
Total TN	43343529	>	43337492
Total FP	16963	<	35845
Total FP CONTRA	2830	<	5737
Total FP INCONS	10418	<	23523
Total FP COMP	3715	<	6585
Total FN	20315	<	30290
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of ContextFold and ProbKnot. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for ContextFold and ProbKnot).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for ContextFold and ProbKnot).
Comparison of average Matthews Correlation Coefficients (MCCs) for ContextFold and ProbKnot. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for ContextFold and ProbKnot).

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Performance of ContextFold - scored higher in this pairwise comparison

1. Total counts & total scores for ContextFold

Total Base Pair Counts
Total TP	42560
Total TN	43343529
Total FP	16963
Total FP CONTRA	2830
Total FP INCONS	10418
Total FP COMP	3715
Total FN	20315

Total Scores
MCC	0.718
Average MCC ± 95% Confidence Intervals	0.712 ± 0.015
Sensitivity	0.677
Positive Predictive Value	0.763
Nr of predictions	610

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2. Individual counts for ContextFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.88	0.83	0.94	62	34125	7	0	4	3	13
ASE_00002	RNaseP_arch links to Rfam database...	0.64	0.60	0.69	44	35447	25	4	16	5	29
ASE_00004	RNaseP_bact_a links to Rfam database...	0.88	0.86	0.90	83	47803	9	1	8	0	14
ASE_00005	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.98	99	57869	2	0	2	0	18
ASE_00006	RNaseP_bact_a links to Rfam database...	0.89	0.87	0.90	81	47496	9	1	8	0	12
ASE_00007	RNaseP_bact_a links to Rfam database...	0.91	0.86	0.97	95	59587	3	0	3	0	15
ASE_00009	RNaseP_arch links to Rfam database...	0.84	0.79	0.90	53	26047	6	0	6	0	14
ASE_00012	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.75	78	73816	29	3	23	3	45
ASE_00014	RNaseP_arch links to Rfam database...	0.70	0.65	0.75	69	54193	26	1	22	3	37
ASE_00017	RNaseP_nuc links to Rfam database...	0.13	0.13	0.13	8	50979	71	12	41	18	56
ASE_00018	RNaseP_bact_a links to Rfam database...	0.88	0.84	0.93	112	80480	9	0	9	0	22
ASE_00020	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	89	73810	21	1	20	0	37
ASE_00021	RNaseP_bact_a links to Rfam database...	0.87	0.79	0.95	126	104064	10	0	6	4	34
ASE_00022	RNaseP_bact_b links to Rfam database...	0.89	0.80	1.00	99	82929	5	0	0	5	25
ASE_00023	RNaseP_bact_a links to Rfam database...	0.88	0.84	0.91	107	84138	13	0	10	3	20
ASE_00025	RNaseP_nuc links to Rfam database...	0.10	0.10	0.10	7	78537	101	11	51	39	64
ASE_00026	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	79	59597	13	1	8	4	31
ASE_00028	RNaseP_bact_b links to Rfam database...	0.86	0.76	0.96	96	84566	8	1	3	4	30
ASE_00029	RNaseP_bact_a links to Rfam database...	0.88	0.84	0.93	102	82918	9	2	6	1	20
ASE_00030	RNaseP_bact_a links to Rfam database...	0.88	0.81	0.95	117	85368	6	2	4	0	28
ASE_00031	RNaseP_bact_a links to Rfam database...	0.95	0.90	1.00	114	86622	5	0	0	5	12
ASE_00032	RNaseP_bact_a links to Rfam database...	0.93	0.87	1.00	103	80097	3	0	0	3	15
ASE_00033	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.88	81	64888	11	0	11	0	40
ASE_00035	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.86	77	70410	15	1	12	2	41
ASE_00036	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.92	98	75749	9	1	7	1	34
ASE_00037	RNaseP_bact_a links to Rfam database...	0.88	0.80	0.98	88	59250	2	0	2	0	22
ASE_00038	RNaseP_bact_a links to Rfam database...	0.94	0.89	1.00	90	53538	0	0	0	0	11
ASE_00040	RNaseP_bact_a links to Rfam database...	0.88	0.81	0.96	108	78891	7	0	4	3	25
ASE_00041	RNaseP_bact_a links to Rfam database...	0.88	0.81	0.97	87	57540	5	0	3	2	21
ASE_00042	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.91	108	89981	14	1	10	3	37
ASE_00044	RNaseP_bact_a links to Rfam database...	0.92	0.87	0.97	91	54521	6	0	3	3	14
ASE_00046	RNaseP_bact_a links to Rfam database...	0.81	0.69	0.96	71	50329	3	0	3	0	32
ASE_00047	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.84	93	74194	18	0	18	0	37
ASE_00052	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	68	61343	15	0	14	1	44
ASE_00053	RNaseP_bact_a links to Rfam database...	0.88	0.82	0.94	109	79285	7	4	3	0	24
ASE_00056	-	0.92	0.85	1.00	61	30815	9	0	0	9	11
ASE_00057	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.85	100	82097	20	5	13	2	34
ASE_00064	RNaseP_bact_a links to Rfam database...	0.95	0.91	1.00	81	45370	1	0	0	1	8
ASE_00066	RNaseP_bact_a links to Rfam database...	0.87	0.79	0.95	103	72282	5	0	5	0	27
ASE_00068	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	64	37604	7	0	7	0	21
ASE_00069	RNaseP_bact_a links to Rfam database...	0.91	0.84	0.99	117	82910	2	0	1	1	23
ASE_00074	RNaseP_bact_a links to Rfam database...	0.95	0.90	1.00	107	67789	0	0	0	0	12
ASE_00075	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.94	120	108683	12	1	7	4	42
ASE_00076	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.89	92	68162	11	0	11	0	26
ASE_00077	RNaseP_bact_a links to Rfam database...	0.88	0.84	0.94	72	45073	5	1	4	0	14
ASE_00078	RNaseP_bact_a links to Rfam database...	0.88	0.88	0.89	73	42989	10	3	6	1	10
ASE_00079	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	68	55522	21	2	19	0	32
ASE_00080	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.84	91	71523	21	0	17	4	32
ASE_00081	RNaseP_bact_a links to Rfam database...	0.92	0.86	1.00	83	49687	0	0	0	0	14
ASE_00082	RNaseP_bact_a links to Rfam database...	0.93	0.86	1.00	100	70400	8	0	0	8	16
ASE_00083	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.83	85	62379	20	0	17	3	25
ASE_00084	RNaseP_bact_a links to Rfam database...	0.93	0.89	0.97	88	53537	3	1	2	0	11
ASE_00087	RNaseP_bact_a links to Rfam database...	0.89	0.81	0.98	116	88292	2	0	2	0	28
ASE_00089	-	0.80	0.73	0.87	58	31308	9	1	8	0	21
ASE_00090	RNaseP_bact_a links to Rfam database...	0.84	0.83	0.86	84	55513	14	1	13	0	17
ASE_00092	RNaseP_bact_a links to Rfam database...	0.94	0.91	0.97	103	63440	3	1	2	0	10
ASE_00096	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.85	85	63446	15	0	15	0	30
ASE_00099	RNaseP_bact_a links to Rfam database...	0.92	0.85	1.00	102	64518	0	0	0	0	18
ASE_00100	RNaseP_nuc links to Rfam database...	0.25	0.25	0.25	19	82140	97	12	44	41	57
ASE_00102	RNaseP_bact_a links to Rfam database...	0.87	0.79	0.95	131	117717	9	1	6	2	35
ASE_00104	RNaseP_bact_a links to Rfam database...	0.92	0.85	1.00	101	64160	0	0	0	0	18
ASE_00105	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.84	72	64175	14	0	14	0	39
ASE_00107	RNaseP_bact_a links to Rfam database...	0.93	0.87	1.00	111	73042	0	0	0	0	16
ASE_00108	RNaseP_nuc links to Rfam database...	0.23	0.27	0.20	17	46887	76	24	43	9	46
ASE_00111	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	50004	92	24	58	10	57
ASE_00112	RNaseP_bact_a links to Rfam database...	0.95	0.90	1.00	104	75362	3	0	0	3	12
ASE_00115	RNaseP_bact_a links to Rfam database...	0.96	0.93	0.99	94	54520	5	0	1	4	7
ASE_00116	RNaseP_arch links to Rfam database...	0.90	0.85	0.97	56	31568	2	0	2	0	10
ASE_00118	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.85	78	60634	15	1	13	1	24
ASE_00119	RNaseP_bact_a links to Rfam database...	0.89	0.87	0.90	94	62731	10	1	9	0	14
ASE_00120	RNaseP_arch links to Rfam database...	0.82	0.73	0.92	69	46896	7	2	4	1	25
ASE_00121	RNaseP_arch links to Rfam database...	0.85	0.77	0.95	71	45075	5	2	2	1	21
ASE_00122	RNaseP_bact_a links to Rfam database...	0.92	0.86	0.97	76	43287	2	0	2	0	12
ASE_00123	RNaseP_bact_a links to Rfam database...	0.88	0.81	0.96	69	38431	3	0	3	0	16
ASE_00125	RNaseP_bact_a links to Rfam database...	0.92	0.86	0.99	76	39263	1	0	1	0	12
ASE_00126	RNaseP_bact_a links to Rfam database...	0.94	0.89	0.99	73	40396	1	0	1	0	9
ASE_00128	RNaseP_bact_a links to Rfam database...	0.93	0.86	1.00	86	53215	0	0	0	0	14
ASE_00129	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.77	76	62736	23	1	22	0	35
ASE_00131	RNaseP_bact_a links to Rfam database...	0.90	0.82	0.99	70	39269	1	0	1	0	15
ASE_00132	RNaseP_bact_a links to Rfam database...	0.90	0.82	0.99	78	50324	2	0	1	1	17
ASE_00134	RNaseP_bact_a links to Rfam database...	0.92	0.89	0.96	85	50314	4	0	4	0	10
ASE_00135	RNaseP_bact_a links to Rfam database...	0.95	0.91	0.99	99	63090	6	0	1	5	10
ASE_00136	RNaseP_bact_a links to Rfam database...	0.95	0.91	0.99	84	48120	1	0	1	0	8
ASE_00137	RNaseP_bact_a links to Rfam database...	0.91	0.88	0.95	86	48425	5	1	4	0	12
ASE_00138	RNaseP_bact_a links to Rfam database...	0.93	0.89	0.97	72	40396	2	0	2	0	9
ASE_00139	RNaseP_bact_a links to Rfam database...	0.94	0.88	1.00	91	54194	1	0	0	1	13
ASE_00140	RNaseP_bact_a links to Rfam database...	0.91	0.84	0.98	105	70769	2	2	0	0	20
ASE_00142	RNaseP_bact_a links to Rfam database...	0.90	0.83	0.97	101	67057	5	0	3	2	21
ASE_00145	RNaseP_arch links to Rfam database...	0.80	0.78	0.81	87	70018	25	4	16	5	24
ASE_00146	RNaseP_bact_a links to Rfam database...	0.84	0.75	0.94	93	70777	7	1	5	1	31
ASE_00148	RNaseP_arch links to Rfam database...	0.85	0.80	0.90	123	112438	17	2	12	3	31
ASE_00151	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.90	80	51914	9	6	3	0	18
ASE_00153	RNaseP_nuc links to Rfam database...	0.51	0.51	0.51	37	57558	68	6	29	33	36
ASE_00154	RNaseP_arch links to Rfam database...	0.69	0.66	0.72	71	65243	31	3	24	4	36
ASE_00155	RNaseP_arch links to Rfam database...	0.87	0.80	0.94	114	93407	12	0	7	5	28
ASE_00163	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.87	78	53211	16	3	9	4	15
ASE_00165	RNaseP_bact_a links to Rfam database...	0.84	0.80	0.89	81	52884	11	3	7	1	20
ASE_00168	RNaseP_nuc links to Rfam database...	0.26	0.30	0.23	19	60645	73	16	46	11	45
ASE_00169	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.91	85	57198	11	0	8	3	22
ASE_00170	RNaseP_bact_a links to Rfam database...	0.91	0.87	0.95	81	48743	6	0	4	2	12
ASE_00171	RNaseP_bact_a links to Rfam database...	0.86	0.79	0.95	74	48438	4	0	4	0	20
ASE_00172	RNaseP_bact_a links to Rfam database...	0.86	0.83	0.90	88	58898	11	2	8	1	18
ASE_00174	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.97	93	60979	4	0	3	1	16
ASE_00175	RNaseP_bact_a links to Rfam database...	0.94	0.90	0.98	96	59933	3	0	2	1	11
ASE_00176	RNaseP_bact_a links to Rfam database...	0.64	0.56	0.73	62	59946	23	5	18	0	48
ASE_00179	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	64	44181	8	4	4	0	20
ASE_00180	RNaseP_bact_a links to Rfam database...	0.93	0.87	1.00	87	51273	0	0	0	0	13
ASE_00181	RNaseP_bact_a links to Rfam database...	0.93	0.90	0.96	95	57531	4	0	4	0	11
ASE_00182	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.97	116	84135	4	0	4	0	20
ASE_00183	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.85	91	61318	17	0	16	1	22
ASE_00184	RNaseP_bact_a links to Rfam database...	0.96	0.93	0.99	95	54519	2	0	1	1	7
ASE_00185	RNaseP_bact_a links to Rfam database...	0.92	0.87	0.98	111	73423	2	0	2	0	17
ASE_00186	RNaseP_bact_a links to Rfam database...	0.89	0.86	0.93	113	78882	12	1	7	4	19
ASE_00187	RNaseP_arch links to Rfam database...	0.78	0.71	0.85	82	68539	16	2	12	2	33
ASE_00189	RNaseP_bact_b links to Rfam database...	0.91	0.87	0.96	89	63097	6	0	4	2	13
ASE_00190	RNaseP_bact_b links to Rfam database...	0.86	0.81	0.91	73	45371	8	0	7	1	17
ASE_00192	RNaseP_bact_b links to Rfam database...	0.73	0.62	0.86	82	84571	19	1	12	6	51
ASE_00194	RNaseP_bact_b links to Rfam database...	0.79	0.71	0.88	84	73440	17	2	10	5	35
ASE_00195	-	0.68	0.60	0.76	80	86215	28	5	20	3	53
ASE_00196	RNaseP_arch links to Rfam database...	0.78	0.75	0.82	56	31558	14	2	10	2	19
ASE_00197	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.82	106	89123	27	0	24	3	39
ASE_00198	RNaseP_bact_a links to Rfam database...	0.95	0.90	1.00	92	52558	0	0	0	0	10
ASE_00203	RNaseP_bact_a links to Rfam database...	0.94	0.90	0.99	86	46578	1	1	0	0	10
ASE_00204	RNaseP_bact_b links to Rfam database...	0.84	0.72	0.98	81	67813	8	0	2	6	31
ASE_00205	RNaseP_arch links to Rfam database...	0.64	0.61	0.68	55	45975	32	1	25	6	35
ASE_00209	RNaseP_arch links to Rfam database...	0.59	0.55	0.63	48	42995	28	1	27	0	40
ASE_00210	RNaseP_arch links to Rfam database...	0.70	0.69	0.71	45	27198	20	3	15	2	20
ASE_00212	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.90	122	93826	16	1	12	3	26
ASE_00213	RNaseP_arch links to Rfam database...	0.87	0.82	0.93	54	27203	6	0	4	2	12
ASE_00214	RNaseP_bact_a links to Rfam database...	0.95	0.91	0.99	94	56185	6	0	1	5	9
ASE_00215	RNaseP_bact_a links to Rfam database...	0.92	0.85	1.00	84	48432	1	0	0	1	15
ASE_00216	RNaseP_bact_a links to Rfam database...	0.91	0.88	0.94	72	39263	5	3	2	0	10
ASE_00217	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.93	67	40398	10	0	5	5	23
ASE_00221	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.84	80	64525	15	1	14	0	37
ASE_00222	RNaseP_arch links to Rfam database...	0.75	0.69	0.82	108	111969	27	2	22	3	49
ASE_00227	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.71	72	78902	29	2	27	0	61
ASE_00228	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.87	71	46889	12	3	8	1	15
ASE_00229	RNaseP_bact_a links to Rfam database...	0.91	0.87	0.94	76	42405	5	1	4	0	11
ASE_00231	RNaseP_bact_a links to Rfam database...	0.94	0.92	0.97	88	47804	3	1	2	0	8
ASE_00232	RNaseP_bact_a links to Rfam database...	0.96	0.93	1.00	78	38425	0	0	0	0	6
ASE_00234	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	94	75353	19	1	18	0	35
ASE_00237	RNaseP_nuc links to Rfam database...	0.08	0.09	0.07	5	45683	76	18	47	11	51
ASE_00238	RNaseP_bact_a links to Rfam database...	0.94	0.90	0.98	103	64156	2	1	1	0	11
ASE_00240	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.81	68	46581	18	0	16	2	25
ASE_00241	RNaseP_bact_a links to Rfam database...	0.96	0.93	0.99	81	43874	1	0	1	0	6
ASE_00242	RNaseP_bact_a links to Rfam database...	0.92	0.89	0.95	100	60970	5	3	2	0	12
ASE_00246	RNaseP_nuc links to Rfam database...	0.14	0.15	0.13	10	48129	75	18	48	9	57
ASE_00247	RNaseP_nuc links to Rfam database...	0.06	0.06	0.07	4	54226	84	7	48	29	60
ASE_00248	RNaseP_bact_a links to Rfam database...	0.93	0.87	0.99	99	62381	1	0	1	0	15
ASE_00250	RNaseP_bact_a links to Rfam database...	0.88	0.80	0.96	105	78894	7	0	4	3	26
ASE_00252	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	115	115309	20	0	16	4	53
ASE_00254	RNaseP_bact_a links to Rfam database...	0.90	0.85	0.95	70	36782	4	0	4	0	12
ASE_00255	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.89	97	74582	12	1	11	0	33
ASE_00257	RNaseP_bact_a links to Rfam database...	0.96	0.93	1.00	90	50950	0	0	0	0	7
ASE_00259	RNaseP_bact_a links to Rfam database...	0.63	0.54	0.75	65	73066	22	2	20	0	56
ASE_00263	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	102	70389	9	0	9	0	18
ASE_00264	RNaseP_nuc links to Rfam database...	0.87	0.82	0.93	82	49053	12	0	6	6	18
ASE_00267	RNaseP_bact_a links to Rfam database...	0.96	0.92	1.00	81	45069	2	0	0	2	7
ASE_00270	RNaseP_bact_a links to Rfam database...	0.91	0.86	0.96	110	72275	5	1	4	0	18
ASE_00274	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.96	86	55521	4	1	3	0	17
ASE_00277	RNaseP_bact_a links to Rfam database...	0.81	0.78	0.85	71	48121	13	1	12	0	20
ASE_00279	RNaseP_bact_a links to Rfam database...	0.92	0.86	0.98	87	53212	2	0	2	0	14
ASE_00280	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.90	80	51914	9	0	9	0	18
ASE_00281	RNaseP_bact_a links to Rfam database...	0.95	0.91	1.00	80	44471	0	0	0	0	8
ASE_00282	RNaseP_bact_a links to Rfam database...	0.88	0.83	0.95	105	77704	10	0	6	4	22
ASE_00283	RNaseP_bact_a links to Rfam database...	0.90	0.86	0.95	92	61679	5	0	5	0	15
ASE_00284	RNaseP_bact_a links to Rfam database...	0.95	0.91	1.00	98	58213	0	0	0	0	10
ASE_00285	RNaseP_bact_a links to Rfam database...	0.86	0.80	0.92	97	68901	8	0	8	0	25
ASE_00286	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	78	46580	10	0	7	3	14
ASE_00287	RNaseP_bact_a links to Rfam database...	0.93	0.86	1.00	89	54857	0	0	0	0	14
ASE_00288	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.90	63	45986	7	2	5	0	30
ASE_00289	RNaseP_bact_a links to Rfam database...	0.89	0.81	0.98	127	100895	5	1	2	2	30
ASE_00291	-	0.81	0.71	0.92	67	48443	8	0	6	2	27
ASE_00292	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	91	81690	29	0	29	0	47
ASE_00294	RNaseP_bact_a links to Rfam database...	0.90	0.83	0.97	142	114334	8	0	5	3	29
ASE_00295	RNaseP_bact_a links to Rfam database...	0.85	0.76	0.96	99	73817	4	0	4	0	32
ASE_00296	RNaseP_bact_a links to Rfam database...	0.84	0.79	0.90	115	91678	13	1	12	0	30
ASE_00297	RNaseP_bact_a links to Rfam database...	0.87	0.84	0.90	82	52884	10	1	8	1	16
ASE_00298	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	77	67427	24	2	22	0	36
ASE_00299	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.82	71	49368	20	0	16	4	29
ASE_00313	RNaseP_nuc links to Rfam database...	0.62	0.60	0.65	53	62399	41	10	19	12	36
ASE_00316	RNaseP_nuc links to Rfam database...	0.89	0.80	0.99	78	107801	35	1	0	34	20
ASE_00318	RNaseP_bact_b links to Rfam database...	0.76	0.68	0.86	80	80107	19	0	13	6	38
ASE_00327	RNaseP_nuc links to Rfam database...	0.87	0.80	0.96	71	57217	21	2	1	18	18
ASE_00328	RNaseP_bact_b links to Rfam database...	0.91	0.86	0.97	96	72672	9	0	3	6	16
ASE_00330	RNaseP_nuc links to Rfam database...	0.83	0.79	0.88	71	56199	23	0	10	13	19
ASE_00332	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.69	85	81687	39	2	36	1	53
ASE_00335	RNaseP_bact_b links to Rfam database...	0.82	0.74	0.91	86	75372	13	0	8	5	30
ASE_00337	RNaseP_nuc links to Rfam database...	0.59	0.56	0.63	40	39276	35	5	19	11	31
ASE_00338	RNaseP_nuc links to Rfam database...	0.76	0.71	0.81	70	66344	31	2	14	15	28
ASE_00339	RNaseP_bact_a links to Rfam database...	0.95	0.91	1.00	108	80092	7	0	0	7	11
ASE_00340	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.82	64	45978	17	2	12	3	21
ASE_00342	RNaseP_bact_a links to Rfam database...	0.91	0.86	0.96	99	62378	4	0	4	0	16
ASE_00343	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.95	94	83337	12	0	5	7	19
ASE_00346	RNaseP_arch links to Rfam database...	0.61	0.58	0.64	56	48118	32	2	29	1	41
ASE_00353	RNaseP_bact_a links to Rfam database...	0.95	0.92	0.99	98	57871	1	1	0	0	9
ASE_00359	RNaseP_arch links to Rfam database...	0.73	0.69	0.79	55	42708	17	2	13	2	25
ASE_00360	RNaseP_arch links to Rfam database...	0.73	0.65	0.82	42	29352	9	0	9	0	23
ASE_00361	RNaseP_bact_a links to Rfam database...	0.94	0.88	1.00	112	75354	2	0	0	2	15
ASE_00362	RNaseP_bact_a links to Rfam database...	0.88	0.86	0.90	78	48118	9	2	7	0	13
ASE_00363	RNaseP_bact_a links to Rfam database...	0.95	0.91	0.98	86	51272	3	0	2	1	8
ASE_00364	RNaseP_bact_a links to Rfam database...	0.90	0.86	0.95	90	54190	5	0	5	0	15
ASE_00366	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.81	75	58560	18	3	15	0	23
ASE_00367	RNaseP_bact_a links to Rfam database...	0.90	0.84	0.96	72	42996	7	0	3	4	14
ASE_00369	RNaseP_bact_a links to Rfam database...	0.96	0.93	1.00	99	55846	1	0	0	1	8
ASE_00370	RNaseP_bact_a links to Rfam database...	0.94	0.90	0.99	76	41828	1	0	1	0	8
ASE_00372	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	81	51911	12	1	10	1	19
ASE_00374	RNaseP_bact_a links to Rfam database...	0.88	0.88	0.90	77	44764	9	2	7	0	11
ASE_00375	RNaseP_bact_a links to Rfam database...	0.94	0.88	1.00	97	60281	0	0	0	0	13
ASE_00376	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	89	56856	8	0	8	0	16
ASE_00377	RNaseP_bact_a links to Rfam database...	0.95	0.93	0.98	99	57529	2	0	2	0	8
ASE_00379	RNaseP_bact_a links to Rfam database...	0.90	0.87	0.94	77	45974	7	0	5	2	12
ASE_00380	RNaseP_bact_a links to Rfam database...	0.92	0.84	1.00	83	54863	0	0	0	0	16
ASE_00382	RNaseP_bact_a links to Rfam database...	0.96	0.93	0.99	78	41826	1	0	1	0	6
ASE_00383	RNaseP_bact_a links to Rfam database...	0.93	0.87	1.00	91	54524	0	0	0	0	14
ASE_00384	RNaseP_bact_a links to Rfam database...	0.95	0.90	1.00	83	48433	0	0	0	0	9
ASE_00385	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.82	61	41831	13	7	6	0	20
ASE_00386	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.90	78	50316	10	5	4	1	18
ASE_00387	RNaseP_bact_a links to Rfam database...	0.89	0.86	0.93	89	55849	7	0	7	0	15
ASE_00388	RNaseP_bact_a links to Rfam database...	0.94	0.89	1.00	79	45674	0	0	0	0	10
ASE_00390	RNaseP_bact_a links to Rfam database...	0.93	0.89	0.97	76	42117	8	0	2	6	9
ASE_00393	RNaseP_bact_a links to Rfam database...	0.89	0.84	0.94	78	47812	5	0	5	0	15
ASE_00394	RNaseP_bact_a links to Rfam database...	0.96	0.91	1.00	85	46886	0	0	0	0	8
ASE_00395	RNaseP_bact_a links to Rfam database...	0.98	0.95	1.00	80	41536	2	0	0	2	4
ASE_00396	RNaseP_bact_a links to Rfam database...	0.91	0.88	0.95	73	41539	4	0	4	0	10
ASE_00397	RNaseP_bact_a links to Rfam database...	0.94	0.89	0.99	93	54521	1	1	0	0	12
ASE_00398	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.80	68	55860	17	0	17	0	36
ASE_00400	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.91	84	57878	8	0	8	0	22
ASE_00401	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.90	102	76915	11	0	11	0	24
ASE_00402	RNaseP_bact_a links to Rfam database...	0.90	0.87	0.94	74	42407	5	0	5	0	11
ASE_00403	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.90	85	55851	9	0	9	0	22
ASE_00404	RNaseP_bact_a links to Rfam database...	0.90	0.86	0.95	73	42994	7	0	4	3	12
ASE_00406	RNaseP_bact_a links to Rfam database...	0.97	0.94	1.00	88	48740	2	0	0	2	6
ASE_00408	-	0.95	0.93	0.97	66	32317	6	2	0	4	5
ASE_00409	-	0.79	0.76	0.83	63	40965	13	2	11	0	20
ASE_00411	RNaseP_bact_a links to Rfam database...	0.82	0.81	0.83	72	49368	15	5	10	0	17
ASE_00412	RNaseP_bact_a links to Rfam database...	0.87	0.81	0.94	85	58221	5	0	5	0	20
ASE_00413	RNaseP_bact_a links to Rfam database...	0.90	0.90	0.90	73	44470	11	5	3	3	8
ASE_00414	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.88	68	46283	15	0	9	6	27
ASE_00415	RNaseP_bact_a links to Rfam database...	0.89	0.85	0.93	88	54851	7	0	7	0	15
ASE_00416	RNaseP_bact_a links to Rfam database...	0.92	0.88	0.96	112	77304	8	1	4	3	15
ASE_00417	RNaseP_arch links to Rfam database...	0.83	0.76	0.90	76	54531	11	0	8	3	24
ASE_00418	RNaseP_arch links to Rfam database...	0.84	0.77	0.91	58	38717	9	0	6	3	17
ASE_00419	RNaseP_bact_a links to Rfam database...	0.96	0.93	0.98	96	54848	3	1	1	1	7
ASE_00422	RNaseP_bact_a links to Rfam database...	0.92	0.88	0.97	83	46885	9	0	3	6	11
ASE_00423	RNaseP_bact_a links to Rfam database...	0.92	0.87	0.97	95	56855	4	2	1	1	14
ASE_00426	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.84	77	60983	15	1	14	0	31
ASE_00428	RNaseP_bact_a links to Rfam database...	0.87	0.82	0.92	102	76525	10	1	8	1	23
ASE_00429	-	0.94	0.88	1.00	58	28145	3	0	0	3	8
ASE_00430	RNaseP_bact_a links to Rfam database...	0.95	0.91	1.00	88	46883	3	0	0	3	9
ASE_00431	RNaseP_bact_a links to Rfam database...	0.85	0.75	0.97	71	46287	9	0	2	7	24
ASE_00434	RNaseP_bact_b links to Rfam database...	0.79	0.75	0.84	82	68167	26	3	13	10	28
ASE_00437	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.83	91	79292	18	0	18	0	44
ASE_00438	RNaseP_bact_a links to Rfam database...	0.87	0.84	0.91	97	65959	10	0	10	0	19
ASE_00441	RNaseP_bact_a links to Rfam database...	0.93	0.87	0.99	97	64163	4	0	1	3	15
ASE_00447	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	79	60288	11	0	11	0	37
ASE_00448	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.97	95	64163	8	0	3	5	17
ASE_00451	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.97	106	70767	3	1	2	0	19
CRW_00004	-	0.77	0.79	0.76	103	154155	50	15	17	18	28
CRW_00005	-	0.85	0.83	0.86	110	137947	38	4	14	20	22
CRW_00007	-	0.39	0.41	0.38	54	144849	88	25	63	0	79
CRW_00009	-	0.64	0.64	0.63	89	137933	67	8	45	14	49
CRW_00010	-	0.79	0.78	0.80	98	102708	30	8	17	5	28
CRW_00011	-	0.93	0.91	0.96	125	118211	18	0	5	13	13
CRW_00012	-	0.30	0.30	0.29	43	147005	107	19	86	2	98
CRW_00013	Intron_gpI links to Rfam database...	0.67	0.60	0.76	69	103649	34	4	18	12	46
CRW_00014	-	0.73	0.72	0.74	88	103621	38	7	24	7	35
CRW_00016	Intron_gpI links to Rfam database...	0.81	0.73	0.92	87	77326	14	3	5	6	33
CRW_00017	-	0.63	0.65	0.61	59	92138	55	4	34	17	32
CRW_00018	-	0.45	0.49	0.42	59	182571	94	40	40	14	62
CRW_00019	-	0.87	0.84	0.91	115	127638	26	4	8	14	22
CRW_00423	-	0.15	0.14	0.17	27	242395	135	21	113	1	162
CRW_00429	-	0.47	0.42	0.52	97	306751	94	12	76	6	136
CRW_00605	-	0.69	0.64	0.74	45	183860	94	0	16	78	25
CRW_00608	-	0.72	0.67	0.78	53	35710	20	0	15	5	26
CRW_00610	Intron_gpI links to Rfam database...	0.87	0.80	0.94	65	36246	7	1	3	3	16
CRW_00611	-	0.80	0.73	0.87	55	31312	10	1	7	2	20
CRW_00612	-	0.71	0.63	0.79	59	270405	125	0	16	109	34
CRW_00613	Intron_gpI links to Rfam database...	0.47	0.42	0.53	33	34918	36	3	26	7	45
CRW_00614	Intron_gpI links to Rfam database...	0.14	0.14	0.14	8	121715	98	13	35	50	49
CRW_00618	Intron_gpI links to Rfam database...	0.21	0.21	0.21	13	56218	64	9	40	15	48
CRW_00619	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	164974	131	8	43	80	73
CRW_00620	Intron_gpI links to Rfam database...	0.31	0.32	0.31	20	150910	112	14	31	67	43
CRW_00621	Intron_gpI links to Rfam database...	0.44	0.41	0.48	29	153121	120	6	25	89	42
CRW_00623	Intron_gpI links to Rfam database...	0.35	0.30	0.41	25	129734	101	6	30	65	58
CRW_00626	-	0.70	0.68	0.71	71	100925	48	9	20	19	33
CRW_00629	-	0.72	0.70	0.74	86	91261	32	9	22	1	36
CRW_00632	-	0.92	0.88	0.97	113	82911	6	0	4	2	15
CRW_00633	Intron_gpI links to Rfam database...	0.81	0.75	0.86	80	63453	15	4	9	2	26
CRW_00634	Intron_gpI links to Rfam database...	0.62	0.62	0.62	58	64526	36	9	27	0	36
CRW_00635	-	0.58	0.54	0.62	74	109159	46	8	37	1	63
CRW_00636	-	0.61	0.57	0.64	82	114832	49	9	37	3	61
CRW_00637	-	0.42	0.39	0.44	62	133763	81	11	67	3	96
CRW_00639	-	0.89	0.86	0.94	118	126630	24	2	6	16	20
CRW_00641	-	0.83	0.82	0.85	62	39830	21	2	9	10	14
CRW_00642	-	0.57	0.60	0.53	39	47205	42	9	25	8	26
CRW_00643	-	0.66	0.65	0.67	79	123138	62	11	28	23	43
CRW_00645	-	0.81	0.81	0.81	54	35444	19	6	7	6	13
CRW_00646	-	0.58	0.55	0.61	35	34923	24	4	18	2	29
CRW_00648	-	0.76	0.74	0.78	109	137936	41	10	20	11	39
CRW_00649	-	0.69	0.65	0.73	80	204371	103	9	20	74	44
CRW_00650	-	0.80	0.75	0.85	106	112925	24	3	16	5	36
CRW_00651	-	0.88	0.83	0.92	101	100018	17	0	9	8	20
CRW_00652	-	0.85	0.81	0.90	105	132238	38	1	11	26	25
CRW_00653	-	0.95	0.92	0.98	123	94704	6	0	3	3	11
CRW_00654	-	0.91	0.85	0.97	105	78102	4	0	3	1	19
CRW_00655	-	0.89	0.82	0.97	102	89148	7	0	3	4	22
CRW_00656	-	0.76	0.71	0.81	92	90412	25	6	15	4	37
CRW_00657	-	0.87	0.84	0.90	114	105904	22	2	10	10	22
CRW_00658	-	0.70	0.68	0.72	69	74595	33	5	22	6	33
CRW_00659	-	0.50	0.49	0.52	30	32327	37	5	23	9	31
CRW_00660	-	0.48	0.47	0.50	28	22099	31	5	23	3	32
CRW_00661	-	0.17	0.18	0.17	9	24256	46	11	34	1	42
CRW_00662	-	0.42	0.42	0.42	27	28616	44	7	30	7	38
CRW_00663	-	0.22	0.21	0.23	13	26050	48	8	35	5	48
CRW_00664	-	0.05	0.05	0.05	4	53549	78	21	54	3	74
CRW_00665	-	0.10	0.10	0.10	5	23605	44	16	27	1	43
CRW_00666	-	0.74	0.71	0.77	89	96026	30	4	22	4	37
CRW_00668	-	0.76	0.75	0.78	112	163734	44	6	26	12	38
CRW_00669	-	0.70	0.66	0.76	78	97358	34	2	23	9	41
CRW_00670	Intron_gpI links to Rfam database...	0.86	0.83	0.90	99	70015	11	4	7	0	21
CRW_00671	Intron_gpI links to Rfam database...	0.83	0.79	0.88	92	62731	12	3	9	0	25
CRW_00672	Intron_gpI links to Rfam database...	0.86	0.84	0.89	93	72285	13	4	8	1	18
CRW_00673	-	0.83	0.84	0.81	88	100020	30	14	6	10	17
CRW_00674	Intron_gpI links to Rfam database...	0.81	0.77	0.85	95	83324	19	1	16	2	29
CRW_00676	Intron_gpI links to Rfam database...	0.60	0.57	0.63	66	93424	41	9	29	3	49
CRW_00677	-	0.81	0.75	0.87	79	71919	17	5	7	5	26
CRW_00679	-	0.79	0.74	0.84	79	76542	19	5	10	4	28
CRW_00681	-	0.66	0.66	0.66	74	112938	53	13	25	15	38
CRW_00685	-	0.69	0.70	0.69	74	156972	62	16	18	28	32
CRW_00686	-	0.61	0.57	0.66	71	95159	48	2	34	12	54
CRW_00687	-	0.71	0.67	0.76	44	28622	18	6	8	4	22
CRW_00688	-	0.84	0.81	0.88	46	21893	6	2	4	0	11
CRW_00689	-	0.53	0.52	0.55	40	33597	35	6	27	2	37
CRW_00690	-	0.56	0.52	0.60	36	33351	28	5	19	4	33
CRW_00691	-	0.65	0.63	0.67	42	27198	24	3	18	3	25
CRW_00692	Intron_gpI links to Rfam database...	0.77	0.73	0.81	66	68554	24	6	9	9	24
CRW_00693	-	0.86	0.83	0.90	101	89141	22	0	11	11	21
CRW_00694	-	0.89	0.84	0.95	102	85798	7	0	5	2	20
CRW_00699	-	0.82	0.76	0.88	96	91697	14	0	13	1	30
CRW_00700	-	0.83	0.79	0.87	116	180767	38	2	16	20	31
CRW_00703	-	0.55	0.55	0.55	36	40405	36	9	20	7	30
CRW_00714	-	0.50	0.47	0.54	50	186263	93	12	30	51	57
CRW_00715	-	0.66	0.57	0.78	59	69302	19	1	16	2	45
CRW_00716	-	0.62	0.56	0.68	50	193679	82	2	22	58	39
CRW_00717	-	0.49	0.43	0.56	64	153620	68	11	40	17	84
CRW_00718	-	0.63	0.54	0.73	103	189894	55	1	38	16	88
CRW_00719	-	0.71	0.73	0.69	66	230086	86	15	14	57	25
CRW_00720	-	0.57	0.60	0.53	55	208231	98	25	24	49	36
CRW_00721	-	0.62	0.62	0.63	42	58586	53	8	17	28	26
CRW_00764	-	0.28	0.27	0.29	53	252935	134	29	99	6	143
CRW_00775	-	0.30	0.27	0.34	57	314654	128	18	92	18	155
CRW_00815	-	0.69	0.69	0.68	109	159735	53	14	37	2	49
CRW_00816	-	0.54	0.53	0.55	69	143791	66	13	43	10	60
CRW_00820	-	0.62	0.59	0.64	86	136369	59	8	40	11	59
PDB_00072	-	0.49	0.50	0.49	104	148029	107	13	94	0	106
PDB_00078	-	0.80	0.75	0.86	86	49670	14	3	11	0	29
PDB_00079	-	0.73	0.68	0.79	96	121649	52	10	16	26	46
PDB_00278	-	0.64	0.56	0.74	40	24922	14	0	14	0	32
PDB_00403	-	0.76	0.70	0.82	107	124619	34	7	17	10	46
PDB_00423	-	0.86	0.76	0.98	56	26739	1	1	0	0	18
PDB_00701	-	0.71	0.65	0.78	71	45360	24	0	20	4	38
PDB_00747	-	0.81	0.69	0.95	55	24473	3	0	3	0	25
PDB_00827	Intron_gpI links to Rfam database...	0.79	0.65	0.96	53	26973	3	0	2	1	28
PDB_00917	-	0.84	0.79	0.89	75	35161	19	4	5	10	20
PDB_00919	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.75	58	44176	24	1	18	5	45
PDB_01129	-	0.37	0.34	0.41	24	35453	38	18	16	4	47
PDB_01157	-	0.33	0.31	0.36	30	50003	54	10	43	1	68
PDB_01166	-	0.59	0.54	0.64	115	181926	70	7	58	5	97
RFA_00597	Telomerase-vert links to Rfam database...	0.40	0.40	0.39	44	97791	79	14	54	11	65
RFA_00598	Telomerase-vert links to Rfam database...	0.45	0.45	0.46	45	84568	67	11	42	14	56
RFA_00599	Telomerase-vert links to Rfam database...	0.27	0.27	0.27	30	101365	98	14	66	18	81
RFA_00600	Telomerase-vert links to Rfam database...	0.23	0.24	0.21	24	120183	108	34	54	20	76
RFA_00601	Telomerase-vert links to Rfam database...	0.33	0.35	0.32	40	99109	96	28	58	10	74
RFA_00602	Telomerase-vert links to Rfam database...	0.52	0.53	0.51	61	101356	72	21	37	14	55
TMR_00007	tmRNA links to Rfam database...	0.79	0.74	0.83	80	61680	20	4	12	4	28
TMR_00008	tmRNA links to Rfam database...	0.68	0.62	0.74	66	65977	29	9	14	6	40
TMR_00010	tmRNA links to Rfam database...	0.60	0.54	0.67	52	57892	26	2	24	0	44
TMR_00012	tmRNA links to Rfam database...	0.62	0.59	0.64	48	64545	39	7	20	12	33
TMR_00014	tmRNA links to Rfam database...	0.85	0.75	0.95	83	68548	9	1	3	5	27
TMR_00017	tmRNA links to Rfam database...	0.84	0.76	0.93	78	67077	6	2	4	0	24
TMR_00018	tmRNA links to Rfam database...	0.77	0.73	0.82	67	64538	15	7	8	0	25
TMR_00028	tmRNA links to Rfam database...	0.69	0.64	0.74	62	62751	23	5	17	1	35
TMR_00030	tmRNA links to Rfam database...	0.47	0.44	0.50	49	75757	50	10	39	1	62
TMR_00034	tmRNA links to Rfam database...	0.65	0.61	0.71	67	59936	33	1	27	5	43
TMR_00035	tmRNA links to Rfam database...	0.50	0.46	0.55	45	67814	43	4	33	6	53
TMR_00036	tmRNA links to Rfam database...	0.53	0.48	0.59	48	90443	62	6	28	28	53
TMR_00038	tmRNA links to Rfam database...	0.73	0.66	0.81	73	71163	17	5	12	0	37
TMR_00042	tmRNA links to Rfam database...	0.54	0.47	0.62	46	62761	31	4	24	3	52
TMR_00046	tmRNA links to Rfam database...	0.54	0.51	0.58	49	62750	39	6	30	3	47
TMR_00047	tmRNA links to Rfam database...	0.30	0.33	0.28	19	48448	51	17	32	2	38
TMR_00048	tmRNA links to Rfam database...	0.52	0.48	0.55	46	64897	44	5	32	7	49
TMR_00049	tmRNA links to Rfam database...	0.34	0.32	0.36	28	63112	58	9	41	8	59
TMR_00051	tmRNA links to Rfam database...	0.74	0.66	0.83	62	65628	24	0	13	11	32
TMR_00055	tmRNA links to Rfam database...	0.39	0.36	0.43	41	78907	55	15	40	0	73
TMR_00057	tmRNA links to Rfam database...	0.49	0.53	0.46	42	73829	57	19	30	8	37
TMR_00061	tmRNA links to Rfam database...	0.54	0.52	0.56	51	59594	50	9	31	10	48
TMR_00062	tmRNA links to Rfam database...	0.73	0.68	0.78	71	78515	29	7	13	9	33
TMR_00064	tmRNA links to Rfam database...	0.51	0.46	0.57	47	76945	38	8	28	2	56
TMR_00065	tmRNA links to Rfam database...	0.69	0.60	0.79	64	76555	18	5	12	1	42
TMR_00067	tmRNA links to Rfam database...	0.76	0.70	0.82	80	82117	21	4	14	3	34
TMR_00073	tmRNA links to Rfam database...	0.60	0.53	0.69	62	65613	28	4	24	0	55
TMR_00076	tmRNA links to Rfam database...	0.63	0.60	0.67	60	70786	39	10	20	9	40
TMR_00080	tmRNA links to Rfam database...	0.60	0.59	0.61	57	70407	37	8	28	1	39
TMR_00081	tmRNA links to Rfam database...	0.73	0.64	0.84	68	67080	14	1	12	1	38
TMR_00082	tmRNA links to Rfam database...	0.70	0.64	0.77	61	67817	20	7	11	2	35
TMR_00083	tmRNA links to Rfam database...	0.83	0.75	0.91	79	68178	9	2	6	1	26
TMR_00092	tmRNA links to Rfam database...	0.63	0.63	0.62	64	67425	43	9	30	4	37
TMR_00093	tmRNA links to Rfam database...	0.61	0.58	0.64	59	64169	35	8	25	2	43
TMR_00096	tmRNA links to Rfam database...	0.50	0.47	0.54	47	64893	40	13	27	0	53
TMR_00101	tmRNA links to Rfam database...	0.77	0.73	0.82	78	64166	19	3	14	2	29
TMR_00102	tmRNA links to Rfam database...	0.43	0.43	0.44	43	64164	56	9	45	2	58
TMR_00103	tmRNA links to Rfam database...	0.73	0.69	0.77	75	64163	25	9	14	2	33
TMR_00104	-	0.19	0.20	0.18	14	66716	73	24	41	8	56
TMR_00106	tmRNA links to Rfam database...	0.65	0.63	0.67	76	89987	41	7	30	4	44
TMR_00109	tmRNA links to Rfam database...	0.58	0.52	0.65	64	88311	41	4	31	6	58
TMR_00111	tmRNA links to Rfam database...	0.56	0.51	0.61	62	90424	42	9	30	3	60
TMR_00116	tmRNA links to Rfam database...	0.54	0.50	0.58	52	64890	45	5	33	7	52
TMR_00117	tmRNA links to Rfam database...	0.69	0.64	0.73	76	80096	38	7	21	10	42
TMR_00118	tmRNA links to Rfam database...	0.71	0.64	0.78	77	81307	29	3	19	7	43
TMR_00119	tmRNA links to Rfam database...	0.71	0.68	0.75	71	71915	28	6	18	4	33
TMR_00123	tmRNA links to Rfam database...	0.88	0.79	0.99	80	66349	1	1	0	0	21
TMR_00124	tmRNA links to Rfam database...	0.59	0.56	0.63	55	70412	41	8	25	8	43
TMR_00125	tmRNA links to Rfam database...	0.71	0.65	0.79	64	64180	21	5	12	4	35
TMR_00127	tmRNA links to Rfam database...	0.71	0.65	0.77	63	62753	26	2	17	7	34
TMR_00128	tmRNA links to Rfam database...	0.53	0.52	0.54	50	60982	43	10	33	0	46
TMR_00131	tmRNA links to Rfam database...	0.65	0.60	0.70	59	64896	27	3	22	2	40
TMR_00135	tmRNA links to Rfam database...	0.73	0.66	0.80	65	62754	25	2	14	9	34
TMR_00136	tmRNA links to Rfam database...	0.57	0.53	0.61	54	74602	42	5	30	7	47
TMR_00137	tmRNA links to Rfam database...	0.75	0.66	0.86	59	61006	13	1	9	3	30
TMR_00139	tmRNA links to Rfam database...	0.49	0.51	0.48	46	62033	53	17	32	4	45
TMR_00140	tmRNA links to Rfam database...	0.81	0.73	0.90	73	73839	21	5	3	13	27
TMR_00142	tmRNA links to Rfam database...	0.57	0.52	0.63	53	70792	41	6	25	10	49
TMR_00143	tmRNA links to Rfam database...	0.74	0.67	0.81	69	64535	26	4	12	10	34
TMR_00144	tmRNA links to Rfam database...	0.59	0.55	0.63	57	74214	34	7	27	0	46
TMR_00146	tmRNA links to Rfam database...	0.76	0.71	0.81	30	32094	32	3	4	25	12
TMR_00150	tmRNA links to Rfam database...	0.63	0.60	0.68	25	43034	45	3	9	33	17
TMR_00152	tmRNA links to Rfam database...	0.43	0.40	0.47	46	81309	59	2	49	8	69
TMR_00155	tmRNA links to Rfam database...	0.56	0.48	0.65	50	61699	34	1	26	7	54
TMR_00156	tmRNA links to Rfam database...	0.77	0.71	0.84	69	60296	17	3	10	4	28
TMR_00158	tmRNA links to Rfam database...	0.55	0.48	0.62	48	60649	30	1	28	1	51
TMR_00159	tmRNA links to Rfam database...	0.59	0.55	0.63	51	62047	32	6	24	2	41
TMR_00160	tmRNA links to Rfam database...	0.80	0.75	0.86	71	64537	20	5	7	8	24
TMR_00164	tmRNA links to Rfam database...	0.69	0.61	0.77	65	66711	21	1	18	2	41
TMR_00165	tmRNA links to Rfam database...	0.54	0.49	0.59	48	61695	39	7	26	6	49
TMR_00166	tmRNA links to Rfam database...	0.74	0.68	0.81	69	61691	16	5	11	0	32
TMR_00168	tmRNA links to Rfam database...	0.77	0.71	0.84	81	60979	19	1	14	4	33
TMR_00173	tmRNA links to Rfam database...	0.32	0.36	0.29	15	42144	55	13	23	19	27
TMR_00179	tmRNA links to Rfam database...	0.65	0.62	0.68	61	67071	37	3	26	8	37
TMR_00180	tmRNA links to Rfam database...	0.68	0.63	0.74	62	67077	27	6	16	5	37
TMR_00182	tmRNA links to Rfam database...	0.47	0.44	0.50	45	66340	50	4	41	5	57
TMR_00183	tmRNA links to Rfam database...	0.48	0.47	0.51	48	63095	49	3	44	2	55
TMR_00184	tmRNA links to Rfam database...	0.52	0.50	0.55	51	63097	43	4	38	1	51
TMR_00193	tmRNA links to Rfam database...	0.35	0.34	0.37	27	59267	55	11	35	9	53
TMR_00194	tmRNA links to Rfam database...	0.57	0.52	0.64	48	62760	30	1	26	3	45
TMR_00196	tmRNA links to Rfam database...	0.51	0.46	0.56	45	60994	40	8	28	4	52
TMR_00199	tmRNA links to Rfam database...	0.47	0.47	0.47	43	62744	53	17	31	5	49
TMR_00200	-	0.47	0.45	0.49	34	41546	45	7	29	9	41
TMR_00204	tmRNA links to Rfam database...	0.59	0.52	0.67	50	60303	28	7	18	3	47
TMR_00207	tmRNA links to Rfam database...	0.75	0.68	0.83	70	72306	15	2	12	1	33
TMR_00223	tmRNA links to Rfam database...	0.57	0.53	0.62	50	64180	32	9	22	1	45
TMR_00224	tmRNA links to Rfam database...	0.75	0.65	0.87	66	64904	15	3	7	5	35
TMR_00226	tmRNA links to Rfam database...	0.69	0.65	0.73	68	69658	31	5	20	6	37
TMR_00227	tmRNA links to Rfam database...	0.70	0.66	0.74	67	70034	27	4	20	3	34
TMR_00228	tmRNA links to Rfam database...	0.48	0.45	0.51	49	88313	48	14	34	0	59
TMR_00234	tmRNA links to Rfam database...	0.77	0.69	0.85	70	58914	17	2	10	5	32
TMR_00238	tmRNA links to Rfam database...	0.46	0.47	0.45	47	84562	64	12	45	7	54
TMR_00239	tmRNA links to Rfam database...	0.70	0.69	0.72	66	61684	26	7	19	0	30
TMR_00240	tmRNA links to Rfam database...	0.59	0.60	0.59	51	63103	40	12	24	4	34
TMR_00246	-	0.42	0.44	0.41	15	78173	83	5	17	61	19
TMR_00248	tmRNA links to Rfam database...	0.38	0.42	0.35	16	54239	62	17	13	32	22
TMR_00257	tmRNA links to Rfam database...	0.78	0.70	0.86	69	67081	11	1	10	0	29
TMR_00259	tmRNA links to Rfam database...	0.64	0.55	0.74	57	67819	20	7	13	0	46
TMR_00261	tmRNA links to Rfam database...	0.59	0.55	0.63	56	66706	33	7	26	0	45
TMR_00262	tmRNA links to Rfam database...	0.65	0.62	0.68	64	74211	31	6	24	1	40
TMR_00271	tmRNA links to Rfam database...	0.66	0.62	0.71	56	64182	27	6	17	4	35
TMR_00274	tmRNA links to Rfam database...	0.71	0.66	0.78	69	66706	25	4	16	5	36
TMR_00278	tmRNA links to Rfam database...	0.70	0.64	0.77	65	67812	25	2	17	6	37
TMR_00279	tmRNA links to Rfam database...	0.45	0.40	0.50	38	68930	46	5	33	8	56
TMR_00280	tmRNA links to Rfam database...	0.72	0.67	0.77	68	65978	26	1	19	6	33
TMR_00283	tmRNA links to Rfam database...	0.64	0.58	0.70	56	65261	31	8	16	7	40
TMR_00289	tmRNA links to Rfam database...	0.63	0.63	0.63	62	67063	39	16	20	3	36
TMR_00290	tmRNA links to Rfam database...	0.64	0.63	0.66	58	64173	35	4	26	5	34
TMR_00296	tmRNA links to Rfam database...	0.29	0.29	0.29	28	68910	68	16	52	0	70
TMR_00298	tmRNA links to Rfam database...	0.50	0.47	0.54	47	68178	43	9	31	3	54
TMR_00300	tmRNA links to Rfam database...	0.53	0.49	0.57	55	70404	48	3	38	7	57
TMR_00301	tmRNA links to Rfam database...	0.68	0.63	0.73	60	82133	33	5	17	11	36
TMR_00302	tmRNA links to Rfam database...	0.55	0.54	0.56	51	77330	49	11	29	9	43
TMR_00305	tmRNA links to Rfam database...	0.78	0.70	0.88	71	60994	17	2	8	7	31
TMR_00306	tmRNA links to Rfam database...	0.79	0.75	0.83	79	64166	19	2	14	3	27
TMR_00310	tmRNA links to Rfam database...	0.61	0.56	0.66	55	63820	32	3	25	4	43
TMR_00317	tmRNA links to Rfam database...	0.61	0.59	0.64	60	68171	37	3	31	3	42
TMR_00331	tmRNA links to Rfam database...	0.48	0.49	0.48	40	66712	56	9	34	13	42
TMR_00332	tmRNA links to Rfam database...	0.78	0.70	0.88	69	67083	10	2	7	1	30
TMR_00334	tmRNA links to Rfam database...	0.77	0.68	0.87	69	66716	10	3	7	0	32
TMR_00337	tmRNA links to Rfam database...	0.57	0.51	0.64	61	82933	34	3	31	0	58
TMR_00340	tmRNA links to Rfam database...	0.63	0.58	0.68	47	64192	38	6	16	16	34
TMR_00341	tmRNA links to Rfam database...	0.63	0.60	0.65	55	63106	31	8	21	2	37
TMR_00343	tmRNA links to Rfam database...	0.74	0.69	0.80	72	64890	18	2	16	0	33
TMR_00345	tmRNA links to Rfam database...	0.62	0.60	0.65	62	63808	39	3	30	6	42
TMR_00346	tmRNA links to Rfam database...	0.65	0.60	0.70	56	64181	26	5	19	2	38
TMR_00348	tmRNA links to Rfam database...	0.41	0.36	0.47	36	77344	54	8	33	13	63
TMR_00352	tmRNA links to Rfam database...	0.25	0.28	0.23	21	95173	89	16	56	17	54
TMR_00353	tmRNA links to Rfam database...	0.51	0.48	0.56	50	84165	52	10	30	12	55
TMR_00357	tmRNA links to Rfam database...	0.53	0.52	0.54	48	82939	55	17	24	14	44
TMR_00358	tmRNA links to Rfam database...	0.66	0.60	0.74	59	74998	36	4	17	15	40
TMR_00361	-	0.36	0.44	0.29	32	93419	78	34	43	1	40
TMR_00366	tmRNA links to Rfam database...	0.51	0.48	0.54	48	67807	51	15	26	10	52
TMR_00372	tmRNA links to Rfam database...	0.64	0.65	0.64	62	70403	44	9	26	9	34
TMR_00374	tmRNA links to Rfam database...	0.61	0.60	0.63	55	81723	34	12	20	2	37
TMR_00375	tmRNA links to Rfam database...	0.65	0.58	0.72	57	73457	34	3	19	12	41
TMR_00376	tmRNA links to Rfam database...	0.65	0.61	0.68	58	74606	35	11	16	8	37
TMR_00378	tmRNA links to Rfam database...	0.52	0.49	0.55	48	67809	45	13	26	6	49
TMR_00383	tmRNA links to Rfam database...	0.56	0.53	0.59	53	66705	44	7	30	7	47
TMR_00384	tmRNA links to Rfam database...	0.82	0.72	0.93	78	65619	6	0	6	0	30
TMR_00393	tmRNA links to Rfam database...	0.62	0.62	0.61	33	53247	59	9	12	38	20
TMR_00395	tmRNA links to Rfam database...	0.77	0.68	0.87	74	64535	11	4	7	0	35
TMR_00398	tmRNA links to Rfam database...	0.76	0.69	0.85	73	65255	13	5	8	0	33
TMR_00399	tmRNA links to Rfam database...	0.55	0.53	0.56	50	64891	41	11	28	2	44
TMR_00404	tmRNA links to Rfam database...	0.70	0.70	0.70	64	67437	40	9	18	13	28
TMR_00408	tmRNA links to Rfam database...	0.54	0.52	0.57	46	65985	39	12	23	4	42
TMR_00409	tmRNA links to Rfam database...	0.85	0.85	0.85	39	68589	57	1	6	50	7
TMR_00411	tmRNA links to Rfam database...	0.40	0.40	0.41	35	60989	58	10	41	7	52
TMR_00415	tmRNA links to Rfam database...	0.57	0.55	0.60	56	67067	42	4	34	4	45
TMR_00419	tmRNA links to Rfam database...	0.50	0.43	0.59	48	81728	50	7	27	16	63
TMR_00422	tmRNA links to Rfam database...	0.55	0.53	0.58	49	67811	44	7	29	8	43
TMR_00423	tmRNA links to Rfam database...	0.52	0.56	0.49	41	63819	50	17	26	7	32
TMR_00427	tmRNA links to Rfam database...	0.70	0.66	0.74	64	67442	25	8	14	3	33
TMR_00429	tmRNA links to Rfam database...	0.70	0.64	0.76	70	74599	24	7	15	2	39
TMR_00430	tmRNA links to Rfam database...	0.39	0.38	0.40	41	82518	64	15	47	2	68
TMR_00431	tmRNA links to Rfam database...	0.68	0.65	0.71	36	51952	44	3	12	29	19
TMR_00432	tmRNA links to Rfam database...	0.68	0.65	0.70	68	79703	34	11	18	5	36
TMR_00433	tmRNA links to Rfam database...	0.60	0.57	0.65	60	80107	34	6	27	1	46
TMR_00439	tmRNA links to Rfam database...	0.61	0.55	0.67	56	68552	32	4	23	5	45
TMR_00441	tmRNA links to Rfam database...	0.18	0.18	0.19	15	62048	70	14	51	5	68
TMR_00443	tmRNA links to Rfam database...	0.87	0.77	0.99	80	67080	1	1	0	0	24
TMR_00448	tmRNA links to Rfam database...	0.76	0.68	0.85	63	62054	11	0	11	0	29
TMR_00451	tmRNA links to Rfam database...	0.69	0.62	0.77	55	63475	16	5	11	0	34
TMR_00457	tmRNA links to Rfam database...	0.61	0.59	0.63	60	78511	38	4	31	3	42
TMR_00458	tmRNA links to Rfam database...	0.73	0.68	0.79	63	63466	18	2	15	1	30
TMR_00460	tmRNA links to Rfam database...	0.68	0.65	0.71	69	79304	31	6	22	3	37
TMR_00465	tmRNA links to Rfam database...	0.59	0.56	0.62	53	64176	33	13	19	1	41
TMR_00469	tmRNA links to Rfam database...	0.79	0.74	0.84	74	64532	14	9	5	0	26
TMR_00472	tmRNA links to Rfam database...	0.72	0.67	0.77	65	64536	23	7	12	4	32
TMR_00478	tmRNA links to Rfam database...	0.44	0.44	0.44	44	71910	58	18	38	2	55
TMR_00498	tmRNA links to Rfam database...	0.70	0.68	0.72	67	68913	26	9	17	0	32
TMR_00499	tmRNA links to Rfam database...	0.45	0.44	0.46	44	64525	57	4	47	6	55
TMR_00501	tmRNA links to Rfam database...	0.49	0.47	0.52	43	62398	42	9	31	2	49
TMR_00502	tmRNA links to Rfam database...	0.61	0.57	0.65	53	75384	32	10	19	3	40
TMR_00503	tmRNA links to Rfam database...	0.73	0.68	0.78	76	67799	28	3	18	7	35
TMR_00519	tmRNA links to Rfam database...	0.72	0.65	0.79	62	63112	19	2	14	3	33
TMR_00520	tmRNA links to Rfam database...	0.72	0.67	0.78	66	63105	28	0	19	9	33
TMR_00522	tmRNA links to Rfam database...	0.64	0.61	0.67	59	63102	37	3	26	8	38
TMR_00528	tmRNA links to Rfam database...	0.77	0.70	0.85	68	63110	12	6	6	0	29
TMR_00540	tmRNA links to Rfam database...	0.74	0.67	0.80	70	73449	19	6	11	2	34
TMR_00541	tmRNA links to Rfam database...	0.61	0.57	0.65	60	61683	38	0	33	5	45
TMR_00544	tmRNA links to Rfam database...	0.52	0.49	0.55	53	89580	48	12	31	5	55
TMR_00547	tmRNA links to Rfam database...	0.73	0.65	0.81	65	65261	17	1	14	2	35
TMR_00553	tmRNA links to Rfam database...	0.51	0.46	0.58	37	48141	31	6	21	4	44
TMR_00559	tmRNA links to Rfam database...	0.67	0.62	0.72	63	62393	25	9	16	0	38
TMR_00560	tmRNA links to Rfam database...	0.69	0.64	0.73	63	60989	23	10	13	0	35
TMR_00562	tmRNA links to Rfam database...	0.53	0.48	0.59	49	72688	42	2	32	8	53
TMR_00563	tmRNA links to Rfam database...	0.74	0.72	0.76	74	75368	33	9	15	9	29
TMR_00566	tmRNA links to Rfam database...	0.59	0.55	0.63	55	60638	36	3	30	3	45
TMR_00568	tmRNA links to Rfam database...	0.69	0.63	0.76	62	60644	22	2	18	2	37
TMR_00570	tmRNA links to Rfam database...	0.58	0.54	0.63	52	60295	35	5	26	4	45
TMR_00571	tmRNA links to Rfam database...	0.61	0.57	0.66	56	60641	35	2	27	6	43
TMR_00576	tmRNA links to Rfam database...	0.84	0.78	0.90	80	60289	12	6	3	3	22
TMR_00579	tmRNA links to Rfam database...	0.38	0.40	0.37	36	80503	74	17	45	12	54
TMR_00580	tmRNA links to Rfam database...	0.68	0.65	0.71	65	60635	29	7	19	3	35
TMR_00581	tmRNA links to Rfam database...	0.73	0.67	0.79	66	62397	23	4	14	5	32
TMR_00584	tmRNA links to Rfam database...	0.80	0.73	0.88	71	60994	14	4	6	4	26
TMR_00586	tmRNA links to Rfam database...	0.68	0.64	0.73	62	60990	26	8	15	3	35
TMR_00587	tmRNA links to Rfam database...	0.82	0.77	0.88	77	61337	11	4	7	0	23
TMR_00588	tmRNA links to Rfam database...	0.53	0.48	0.60	48	77341	41	5	27	9	53
TMR_00594	tmRNA links to Rfam database...	0.61	0.55	0.69	57	79318	30	7	19	4	47
TMR_00596	tmRNA links to Rfam database...	0.53	0.49	0.57	47	78127	45	11	25	9	48
TMR_00599	tmRNA links to Rfam database...	0.45	0.49	0.42	35	63106	62	18	31	13	37
TMR_00600	tmRNA links to Rfam database...	0.72	0.63	0.82	72	79712	18	6	10	2	43
TMR_00601	tmRNA links to Rfam database...	0.69	0.67	0.72	28	58957	55	1	10	44	14
TMR_00603	tmRNA links to Rfam database...	0.80	0.74	0.86	32	60341	49	1	4	44	11
TMR_00604	tmRNA links to Rfam database...	0.78	0.72	0.84	81	62738	16	2	14	0	31
TMR_00605	tmRNA links to Rfam database...	0.59	0.55	0.63	59	74211	39	11	24	4	49
TMR_00606	tmRNA links to Rfam database...	0.67	0.64	0.70	69	68907	35	9	21	5	38
TMR_00609	tmRNA links to Rfam database...	0.68	0.66	0.71	75	63440	31	8	23	0	38
TMR_00610	tmRNA links to Rfam database...	0.79	0.74	0.85	77	62037	21	6	8	7	27
TMR_00611	tmRNA links to Rfam database...	0.71	0.70	0.73	71	61328	26	6	20	0	31
TMR_00612	tmRNA links to Rfam database...	0.46	0.45	0.47	47	60625	54	7	47	0	57
TMR_00614	tmRNA links to Rfam database...	0.69	0.64	0.74	67	60984	30	2	22	6	37
TMR_00615	tmRNA links to Rfam database...	0.78	0.72	0.84	69	63821	18	7	6	5	27
TMR_00616	tmRNA links to Rfam database...	0.63	0.62	0.65	61	67067	34	8	25	1	38
TMR_00617	tmRNA links to Rfam database...	0.61	0.62	0.61	36	34657	27	9	14	4	22
TMR_00623	tmRNA links to Rfam database...	0.63	0.56	0.72	60	61342	25	2	21	2	48
TMR_00624	tmRNA links to Rfam database...	0.55	0.53	0.58	57	62383	46	7	34	5	51
TMR_00625	tmRNA links to Rfam database...	0.52	0.50	0.55	53	78907	44	12	31	1	53
TMR_00626	tmRNA links to Rfam database...	0.77	0.72	0.84	78	67803	22	6	9	7	31
TMR_00680	tmRNA links to Rfam database...	0.33	0.32	0.33	32	67800	68	12	52	4	67
TMR_00681	tmRNA links to Rfam database...	0.62	0.60	0.65	58	65977	31	4	27	0	39
TMR_00683	tmRNA links to Rfam database...	0.56	0.57	0.55	57	82925	58	13	33	12	43
TMR_00686	tmRNA links to Rfam database...	0.68	0.67	0.69	72	71148	33	11	22	0	36
TMR_00687	tmRNA links to Rfam database...	0.72	0.68	0.75	76	71530	25	9	16	0	35
TMR_00696	tmRNA links to Rfam database...	0.51	0.47	0.55	54	84980	55	7	37	11	60
TMR_00698	tmRNA links to Rfam database...	0.55	0.50	0.60	52	63104	37	3	31	3	52
TMR_00699	tmRNA links to Rfam database...	0.80	0.75	0.85	76	67072	13	3	10	0	26
TMR_00702	tmRNA links to Rfam database...	0.77	0.71	0.84	71	67076	14	4	10	0	29
TMR_00703	tmRNA links to Rfam database...	0.84	0.76	0.94	75	67448	5	1	4	0	24
TMR_00706	tmRNA links to Rfam database...	0.61	0.52	0.70	54	66353	23	3	20	0	49
TMR_00711	tmRNA links to Rfam database...	0.45	0.44	0.46	43	67802	53	11	40	2	55
TMR_00712	tmRNA links to Rfam database...	0.61	0.57	0.66	62	78512	40	1	31	8	47
TMR_00716	tmRNA links to Rfam database...	0.60	0.55	0.65	55	62751	33	1	28	4	45

^top

Performance of ProbKnot - scored lower in this pairwise comparison

1. Total counts & total scores for ProbKnot

Total Base Pair Counts
Total TP	32585
Total TN	43337492
Total FP	35845
Total FP CONTRA	5737
Total FP INCONS	23523
Total FP COMP	6585
Total FN	30290

Total Scores
MCC	0.522
Average MCC ± 95% Confidence Intervals	0.521 ± 0.014
Sensitivity	0.518
Positive Predictive Value	0.527
Nr of predictions	610

^top

2. Individual counts for ProbKnot [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.63	0.61	0.65	46	34120	32	4	21	7	29
ASE_00002	RNaseP_arch links to Rfam database...	0.69	0.67	0.71	49	35442	28	4	16	8	24
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	67	47802	28	9	17	2	30
ASE_00005	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	65	57876	33	4	25	4	52
ASE_00006	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	49	47497	45	10	30	5	44
ASE_00007	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.80	70	59598	25	0	17	8	40
ASE_00009	RNaseP_arch links to Rfam database...	0.38	0.37	0.40	25	26043	38	5	33	0	42
ASE_00012	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.56	56	73820	50	3	41	6	67
ASE_00014	RNaseP_arch links to Rfam database...	0.44	0.42	0.46	44	54190	57	2	49	6	62
ASE_00017	RNaseP_nuc links to Rfam database...	0.17	0.20	0.15	13	50951	92	28	48	16	51
ASE_00018	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	70	80482	51	1	48	2	64
ASE_00020	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	72	73803	51	6	39	6	54
ASE_00021	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	90	104066	49	4	36	9	70
ASE_00022	RNaseP_bact_b links to Rfam database...	0.51	0.46	0.56	57	82927	51	5	39	7	67
ASE_00023	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	84	84131	45	6	34	5	43
ASE_00025	RNaseP_nuc links to Rfam database...	0.29	0.31	0.27	22	78525	111	9	50	52	49
ASE_00026	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	58	59585	47	3	39	5	52
ASE_00028	RNaseP_bact_b links to Rfam database...	0.73	0.70	0.76	88	84550	36	6	22	8	38
ASE_00029	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.61	71	82912	48	13	32	3	51
ASE_00030	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.72	88	85369	38	0	34	4	57
ASE_00031	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.72	84	86619	42	2	31	9	42
ASE_00032	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.56	65	80083	53	12	40	1	53
ASE_00033	RNaseP_bact_a links to Rfam database...	0.37	0.32	0.43	39	64890	53	4	47	2	82
ASE_00035	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.40	44	70391	70	9	56	5	74
ASE_00036	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.49	64	75725	69	9	57	3	68
ASE_00037	RNaseP_bact_a links to Rfam database...	0.41	0.36	0.47	40	59254	50	1	45	4	70
ASE_00038	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	76	53536	22	1	15	6	25
ASE_00040	RNaseP_bact_a links to Rfam database...	0.46	0.40	0.53	53	78903	52	4	43	5	80
ASE_00041	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.48	44	57538	53	5	43	5	64
ASE_00042	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.54	66	89978	62	2	54	6	79
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.74	0.74	78	54509	34	6	22	6	27
ASE_00046	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.73	66	50313	26	3	21	2	37
ASE_00047	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.61	73	74185	48	2	45	1	57
ASE_00052	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	64	61324	43	9	28	6	48
ASE_00053	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	78	79278	52	5	40	7	55
ASE_00056	-	0.47	0.44	0.51	32	30813	38	4	27	7	40
ASE_00057	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.62	79	82088	54	8	40	6	55
ASE_00064	RNaseP_bact_a links to Rfam database...	0.38	0.39	0.38	35	45358	67	6	52	9	54
ASE_00066	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	66	72280	46	1	43	2	64
ASE_00068	RNaseP_bact_a links to Rfam database...	0.57	0.52	0.64	44	37606	30	2	23	5	41
ASE_00069	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.67	87	82899	46	5	37	4	53
ASE_00074	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	61	67785	53	4	46	3	58
ASE_00075	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.72	100	108673	51	3	35	13	62
ASE_00076	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	58	68155	57	2	50	5	60
ASE_00077	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.57	46	45069	41	4	31	6	40
ASE_00078	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.71	51	42999	27	2	19	6	32
ASE_00079	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.52	51	55513	49	2	45	2	49
ASE_00080	RNaseP_bact_a links to Rfam database...	0.59	0.54	0.63	67	71525	45	6	33	6	56
ASE_00081	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	67	49690	15	4	9	2	30
ASE_00082	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.90	81	70410	24	1	8	15	35
ASE_00083	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	73	62377	38	8	23	7	37
ASE_00084	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	75	53536	19	4	13	2	24
ASE_00087	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.78	92	88292	33	4	22	7	52
ASE_00089	-	0.49	0.46	0.53	36	31307	37	1	31	5	43
ASE_00090	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.66	68	55508	43	4	31	8	33
ASE_00092	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	85	63443	26	3	15	8	28
ASE_00096	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	53	63440	55	5	48	2	62
ASE_00099	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	86	64525	15	0	9	6	34
ASE_00100	RNaseP_nuc links to Rfam database...	0.31	0.32	0.31	24	82137	109	5	49	55	52
ASE_00102	RNaseP_bact_a links to Rfam database...	0.57	0.50	0.64	83	117726	49	6	40	3	83
ASE_00104	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.76	78	64158	29	2	23	4	41
ASE_00105	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	45	64166	59	7	43	9	66
ASE_00107	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.76	90	73035	29	1	27	1	37
ASE_00108	RNaseP_nuc links to Rfam database...	0.47	0.49	0.44	31	46901	67	5	34	28	32
ASE_00111	RNaseP_nuc links to Rfam database...	0.28	0.32	0.25	18	50015	71	21	32	18	39
ASE_00112	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	86	75362	25	2	16	7	30
ASE_00115	RNaseP_bact_a links to Rfam database...	0.67	0.68	0.66	69	54510	47	7	29	11	32
ASE_00116	RNaseP_arch links to Rfam database...	0.39	0.36	0.43	24	31570	35	4	28	3	42
ASE_00118	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.47	48	60624	58	4	50	4	54
ASE_00119	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.87	87	62735	16	2	11	3	21
ASE_00120	RNaseP_arch links to Rfam database...	0.57	0.55	0.60	52	46884	35	7	28	0	42
ASE_00121	RNaseP_arch links to Rfam database...	0.25	0.25	0.26	23	45061	68	5	61	2	69
ASE_00122	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.76	56	43291	18	0	18	0	32
ASE_00123	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	44	38423	42	2	34	6	41
ASE_00125	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.73	56	39263	29	4	17	8	32
ASE_00126	RNaseP_bact_a links to Rfam database...	0.78	0.77	0.80	63	40391	23	1	15	7	19
ASE_00128	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.75	70	53208	31	3	20	8	30
ASE_00129	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	78	62733	31	2	22	7	33
ASE_00131	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	50	39261	39	1	28	10	35
ASE_00132	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.67	61	50312	32	8	22	2	34
ASE_00134	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.42	39	50311	58	8	45	5	56
ASE_00135	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.66	70	63084	43	1	35	7	39
ASE_00136	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	70	48122	22	0	13	9	22
ASE_00137	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.70	66	48422	33	2	26	5	32
ASE_00138	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	49	40393	33	10	18	5	32
ASE_00139	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.72	63	54197	31	1	24	6	41
ASE_00140	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	80	70763	36	4	29	3	45
ASE_00142	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	80	67056	31	5	20	6	42
ASE_00145	RNaseP_arch links to Rfam database...	0.55	0.54	0.57	60	70019	51	7	39	5	51
ASE_00146	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	69	70772	39	6	29	4	55
ASE_00148	RNaseP_arch links to Rfam database...	0.69	0.66	0.73	101	112437	39	4	33	2	53
ASE_00151	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.77	67	51916	27	7	13	7	31
ASE_00153	RNaseP_nuc links to Rfam database...	0.62	0.67	0.58	49	57545	73	9	27	37	24
ASE_00154	RNaseP_arch links to Rfam database...	0.58	0.57	0.59	61	65237	46	4	39	3	46
ASE_00155	RNaseP_arch links to Rfam database...	0.54	0.52	0.56	74	93395	62	10	49	3	68
ASE_00163	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.33	29	53214	69	5	53	11	64
ASE_00165	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	45	52879	53	3	48	2	56
ASE_00168	RNaseP_nuc links to Rfam database...	0.17	0.22	0.14	14	60624	105	27	61	17	50
ASE_00169	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	44	57206	49	4	37	8	63
ASE_00170	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.74	64	48741	31	3	20	8	29
ASE_00171	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	66	48430	22	6	14	2	28
ASE_00172	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	76	58906	20	2	12	6	30
ASE_00174	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.51	54	60970	54	8	43	3	55
ASE_00175	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.73	65	59942	31	2	22	7	42
ASE_00176	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.66	59	59942	36	4	26	6	51
ASE_00179	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	46	44175	33	5	27	1	38
ASE_00180	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.73	66	51270	30	8	16	6	34
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	69	57541	26	4	16	6	37
ASE_00182	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	77	84129	53	5	44	4	59
ASE_00183	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	77	61318	37	3	27	7	36
ASE_00184	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.70	71	54513	37	5	26	6	31
ASE_00185	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.81	92	73422	29	1	21	7	36
ASE_00186	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	90	78878	44	3	32	9	42
ASE_00187	RNaseP_arch links to Rfam database...	0.41	0.39	0.43	45	68531	66	7	52	7	70
ASE_00189	RNaseP_bact_b links to Rfam database...	0.66	0.65	0.67	66	63091	37	7	26	4	36
ASE_00190	RNaseP_bact_b links to Rfam database...	0.62	0.61	0.63	55	45364	35	4	28	3	35
ASE_00192	RNaseP_bact_b links to Rfam database...	0.51	0.50	0.52	67	84538	67	10	51	6	66
ASE_00194	RNaseP_bact_b links to Rfam database...	0.49	0.46	0.53	55	73432	55	6	43	6	64
ASE_00195	-	0.61	0.59	0.64	79	86196	48	8	37	3	54
ASE_00196	RNaseP_arch links to Rfam database...	0.79	0.79	0.79	59	31551	23	2	14	7	16
ASE_00197	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.63	81	89125	55	3	44	8	64
ASE_00198	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.87	77	52561	19	3	9	7	25
ASE_00203	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.82	68	46582	21	4	11	6	28
ASE_00204	RNaseP_bact_b links to Rfam database...	0.69	0.66	0.73	74	67794	36	5	23	8	38
ASE_00205	RNaseP_arch links to Rfam database...	0.62	0.62	0.62	56	45965	39	6	29	4	34
ASE_00209	RNaseP_arch links to Rfam database...	0.43	0.40	0.46	35	42995	41	6	35	0	53
ASE_00210	RNaseP_arch links to Rfam database...	0.64	0.66	0.62	43	27192	28	6	20	2	22
ASE_00212	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.68	90	93828	49	5	38	6	58
ASE_00213	RNaseP_arch links to Rfam database...	0.71	0.70	0.73	46	27198	19	3	14	2	20
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.79	0.79	81	56178	31	4	17	10	22
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	57	48426	35	5	28	2	42
ASE_00216	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.52	37	39269	35	12	22	1	45
ASE_00217	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.38	29	40394	53	5	42	6	61
ASE_00221	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.75	66	64532	28	0	22	6	51
ASE_00222	RNaseP_arch links to Rfam database...	0.55	0.51	0.59	80	111965	58	5	51	2	77
ASE_00227	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	72	78875	56	7	49	0	61
ASE_00228	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	47	46892	33	9	23	1	39
ASE_00229	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	57	42407	29	4	18	7	30
ASE_00231	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.63	58	47803	38	6	28	4	38
ASE_00232	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.67	55	38421	31	8	19	4	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	71	75354	48	3	38	7	58
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45678	92	28	47	17	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.80	74	64168	26	2	17	7	40
ASE_00240	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.66	56	46580	37	1	28	8	37
ASE_00241	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.68	52	43879	32	1	24	7	35
ASE_00242	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.69	67	60978	32	3	27	2	45
ASE_00246	RNaseP_nuc links to Rfam database...	0.39	0.40	0.37	27	48132	68	12	34	22	40
ASE_00247	RNaseP_nuc links to Rfam database...	0.63	0.63	0.63	40	54222	66	7	16	43	24
ASE_00248	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.44	42	62386	55	4	49	2	72
ASE_00250	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.66	77	78887	44	8	31	5	54
ASE_00252	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.62	97	115283	69	2	58	9	71
ASE_00254	RNaseP_bact_a links to Rfam database...	0.37	0.33	0.42	27	36792	44	3	34	7	55
ASE_00255	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	70	74565	59	5	51	3	60
ASE_00257	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	61	50953	33	1	25	7	36
ASE_00259	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	57	73049	52	6	41	5	64
ASE_00263	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	83	70383	40	4	30	6	37
ASE_00264	RNaseP_nuc links to Rfam database...	0.62	0.59	0.66	59	49051	49	1	30	18	41
ASE_00267	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	52	45075	34	4	19	11	36
ASE_00270	RNaseP_bact_a links to Rfam database...	0.80	0.79	0.82	101	72267	29	1	21	7	27
ASE_00274	RNaseP_bact_a links to Rfam database...	0.64	0.56	0.73	58	55531	25	5	17	3	45
ASE_00277	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	40	48114	53	9	42	2	51
ASE_00279	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.52	49	53206	50	6	40	4	52
ASE_00280	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	46	51917	45	10	30	5	52
ASE_00281	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.80	59	44477	22	0	15	7	29
ASE_00282	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.47	56	77695	67	5	59	3	71
ASE_00283	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.79	79	61676	28	4	17	7	28
ASE_00284	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.70	72	58208	36	5	26	5	36
ASE_00285	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.85	87	68904	26	4	11	11	35
ASE_00286	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.40	36	46576	62	3	50	9	56
ASE_00287	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	72	54851	26	3	20	3	31
ASE_00288	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.30	27	45967	65	8	54	3	66
ASE_00289	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.70	89	100898	43	7	31	5	68
ASE_00291	-	0.42	0.43	0.43	40	48422	55	9	45	1	54
ASE_00292	RNaseP_bact_a links to Rfam database...	0.48	0.43	0.54	60	81699	54	2	49	3	78
ASE_00294	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.85	115	114345	27	2	19	6	56
ASE_00295	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.62	78	73795	50	7	40	3	53
ASE_00296	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.46	57	91683	70	6	60	4	88
ASE_00297	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.79	71	52885	20	3	16	1	27
ASE_00298	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	54	67424	55	2	48	5	59
ASE_00299	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.53	54	49353	54	6	42	6	46
ASE_00313	RNaseP_nuc links to Rfam database...	0.65	0.65	0.64	58	62391	51	10	22	19	31
ASE_00316	RNaseP_nuc links to Rfam database...	0.57	0.54	0.60	53	107791	73	12	24	37	45
ASE_00318	RNaseP_bact_b links to Rfam database...	0.63	0.64	0.63	75	80081	49	15	29	5	43
ASE_00327	RNaseP_nuc links to Rfam database...	0.81	0.79	0.83	70	57207	35	4	10	21	19
ASE_00328	RNaseP_bact_b links to Rfam database...	0.68	0.66	0.70	74	72665	43	7	25	11	38
ASE_00330	RNaseP_nuc links to Rfam database...	0.65	0.69	0.62	62	56180	55	9	29	17	28
ASE_00332	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	68	81681	65	6	55	4	70
ASE_00335	RNaseP_bact_b links to Rfam database...	0.60	0.59	0.61	69	75353	49	8	36	5	47
ASE_00337	RNaseP_nuc links to Rfam database...	0.38	0.41	0.36	29	39260	66	5	46	15	42
ASE_00338	RNaseP_nuc links to Rfam database...	0.64	0.60	0.68	59	66343	49	3	25	21	39
ASE_00339	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.74	72	80103	34	1	24	9	47
ASE_00340	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.72	61	45971	30	7	17	6	24
ASE_00342	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.68	65	62385	34	2	29	3	50
ASE_00343	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	78	83326	45	7	25	13	35
ASE_00346	RNaseP_arch links to Rfam database...	0.46	0.44	0.48	43	48115	54	4	43	7	54
ASE_00353	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	62	57871	41	4	33	4	45
ASE_00359	RNaseP_arch links to Rfam database...	0.24	0.24	0.24	19	42698	61	7	54	0	61
ASE_00360	RNaseP_arch links to Rfam database...	0.32	0.31	0.33	20	29343	40	8	32	0	45
ASE_00361	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	69	75338	62	13	46	3	58
ASE_00362	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.58	53	48113	41	2	37	2	38
ASE_00363	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	52	51273	44	2	33	9	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	74	54188	28	2	21	5	31
ASE_00366	RNaseP_bact_a links to Rfam database...	0.40	0.42	0.39	41	58547	67	11	54	2	57
ASE_00367	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	47	42993	40	5	26	9	39
ASE_00369	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	63	55854	30	1	27	2	44
ASE_00370	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	59	41828	26	1	17	8	25
ASE_00372	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.68	65	51908	37	7	23	7	35
ASE_00374	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.72	63	44762	28	3	22	3	25
ASE_00375	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.87	85	60280	22	1	12	9	25
ASE_00376	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	68	56849	41	5	31	5	37
ASE_00377	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	79	57526	35	4	21	10	28
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	51	45975	41	4	26	11	38
ASE_00380	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.70	66	54852	32	6	22	4	33
ASE_00382	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.71	56	41826	29	6	17	6	28
ASE_00383	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.57	48	54531	43	5	31	7	57
ASE_00384	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	54	48430	38	2	30	6	38
ASE_00385	RNaseP_bact_a links to Rfam database...	0.51	0.52	0.51	42	41822	46	13	28	5	39
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	52	50307	48	7	37	4	44
ASE_00387	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	68	55850	33	1	26	6	36
ASE_00388	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	52	45676	37	1	24	12	37
ASE_00390	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.63	51	42114	41	0	30	11	34
ASE_00393	RNaseP_bact_a links to Rfam database...	0.47	0.42	0.53	39	47821	43	2	33	8	54
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.82	72	46883	20	3	13	4	21
ASE_00395	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.74	55	41542	30	1	18	11	29
ASE_00396	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	43	41540	38	2	31	5	40
ASE_00397	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.61	61	54515	47	6	33	8	44
ASE_00398	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	58	55857	39	1	29	9	46
ASE_00400	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.68	68	57870	38	1	31	6	38
ASE_00401	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	80	76904	46	6	38	2	46
ASE_00402	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.79	57	42414	18	2	13	3	28
ASE_00403	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.47	45	55850	57	5	45	7	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	44	42990	46	6	31	9	41
ASE_00406	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.83	72	48741	26	3	12	11	22
ASE_00408	-	0.70	0.72	0.68	51	32310	31	4	20	7	20
ASE_00409	-	0.45	0.46	0.45	38	40956	47	10	37	0	45
ASE_00411	RNaseP_bact_a links to Rfam database...	0.46	0.46	0.47	41	49367	54	6	41	7	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.52	50	58214	51	8	39	4	55
ASE_00413	RNaseP_bact_a links to Rfam database...	0.64	0.67	0.62	54	44464	34	11	22	1	27
ASE_00414	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	43	46273	51	2	42	7	52
ASE_00415	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.69	68	54848	33	5	25	3	35
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77305	41	2	29	10	42
ASE_00417	RNaseP_arch links to Rfam database...	0.36	0.37	0.35	37	54509	72	11	58	3	63
ASE_00418	RNaseP_arch links to Rfam database...	0.19	0.20	0.19	15	38700	70	8	58	4	60
ASE_00419	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	83	54852	14	3	8	3	20
ASE_00422	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.81	72	46882	24	3	14	7	22
ASE_00423	RNaseP_bact_a links to Rfam database...	0.61	0.61	0.60	67	56841	46	10	35	1	42
ASE_00426	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	45	60979	51	3	48	0	63
ASE_00428	RNaseP_bact_a links to Rfam database...	0.78	0.75	0.82	94	76521	29	4	17	8	31
ASE_00429	-	0.56	0.52	0.61	34	28147	31	0	22	9	32
ASE_00430	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	72	46882	24	3	14	7	25
ASE_00431	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.71	55	46282	32	2	21	9	40
ASE_00434	RNaseP_bact_b links to Rfam database...	0.62	0.61	0.64	67	68160	49	5	33	11	43
ASE_00437	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.47	55	79283	69	1	62	6	80
ASE_00438	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.53	52	65967	47	3	44	0	64
ASE_00441	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.82	83	64160	27	2	16	9	29
ASE_00447	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	84	60275	24	2	17	5	32
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.23	0.22	26	64143	99	8	84	7	86
ASE_00451	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.65	75	70760	48	3	38	7	50
CRW_00004	-	0.63	0.66	0.61	86	154148	83	16	40	27	45
CRW_00005	-	0.62	0.64	0.60	84	137935	75	15	41	19	48
CRW_00007	-	0.46	0.50	0.43	67	144835	93	30	59	4	66
CRW_00009	-	0.55	0.56	0.53	77	137931	93	9	58	26	61
CRW_00010	-	0.81	0.82	0.80	103	102703	45	6	19	20	23
CRW_00011	-	0.64	0.67	0.61	93	118189	71	11	48	12	45
CRW_00012	-	0.52	0.53	0.50	75	147003	92	14	61	17	66
CRW_00013	Intron_gpI links to Rfam database...	0.39	0.37	0.42	43	103637	84	9	51	24	72
CRW_00014	-	0.51	0.50	0.51	62	103618	75	15	45	15	61
CRW_00016	Intron_gpI links to Rfam database...	0.48	0.45	0.50	54	77314	68	6	47	15	66
CRW_00017	-	0.52	0.54	0.49	49	92136	81	18	32	31	42
CRW_00018	-	0.59	0.60	0.58	72	182586	105	10	42	53	49
CRW_00019	-	0.72	0.74	0.71	101	127622	70	5	37	28	36
CRW_00423	-	0.16	0.16	0.16	30	242365	176	28	133	15	159
CRW_00429	-	0.16	0.16	0.17	38	306710	191	34	154	3	195
CRW_00605	-	0.68	0.71	0.64	50	183843	148	8	20	120	20
CRW_00608	-	0.73	0.68	0.77	54	35708	25	1	15	9	25
CRW_00610	Intron_gpI links to Rfam database...	0.44	0.44	0.43	36	36232	49	8	39	2	45
CRW_00611	-	0.69	0.67	0.71	50	31305	28	0	20	8	25
CRW_00612	-	0.63	0.59	0.67	55	270398	176	1	26	149	38
CRW_00613	Intron_gpI links to Rfam database...	0.84	0.82	0.86	64	34906	18	0	10	8	14
CRW_00614	Intron_gpI links to Rfam database...	0.14	0.16	0.12	9	121698	120	17	47	56	48
CRW_00618	Intron_gpI links to Rfam database...	0.18	0.20	0.16	12	56207	83	15	46	22	49
CRW_00619	Intron_gpI links to Rfam database...	0.35	0.37	0.33	27	164943	151	8	47	96	46
CRW_00620	Intron_gpI links to Rfam database...	0.18	0.21	0.15	13	150891	156	19	52	85	50
CRW_00621	Intron_gpI links to Rfam database...	0.35	0.34	0.36	24	153114	139	8	35	96	47
CRW_00623	Intron_gpI links to Rfam database...	0.31	0.29	0.32	24	129721	122	7	43	72	59
CRW_00626	-	0.55	0.61	0.50	63	100900	85	24	38	23	41
CRW_00629	-	0.41	0.42	0.40	51	91249	81	13	65	3	71
CRW_00632	-	0.64	0.64	0.63	82	82898	56	5	43	8	46
CRW_00633	Intron_gpI links to Rfam database...	0.62	0.59	0.65	63	63449	38	9	25	4	43
CRW_00634	Intron_gpI links to Rfam database...	0.50	0.49	0.52	46	64531	48	10	33	5	48
CRW_00635	-	0.39	0.39	0.39	54	109138	95	12	74	9	83
CRW_00636	-	0.45	0.45	0.46	64	114822	81	13	61	7	79
CRW_00637	-	0.41	0.41	0.40	65	133741	104	18	79	7	93
CRW_00639	-	0.63	0.67	0.61	92	126604	70	19	41	10	46
CRW_00641	-	0.73	0.75	0.70	57	39822	30	5	19	6	19
CRW_00642	-	0.51	0.58	0.45	38	47194	60	11	35	14	27
CRW_00643	-	0.37	0.43	0.33	52	123096	111	33	75	3	70
CRW_00645	-	0.70	0.75	0.67	50	35436	32	8	17	7	17
CRW_00646	-	0.59	0.61	0.57	39	34912	40	8	21	11	25
CRW_00648	-	0.61	0.61	0.61	90	137927	63	15	43	5	58
CRW_00649	-	0.73	0.75	0.70	93	204348	122	7	32	83	31
CRW_00650	-	0.54	0.52	0.56	74	112918	66	7	51	8	68
CRW_00651	-	0.49	0.53	0.45	64	99985	82	18	61	3	57
CRW_00652	-	0.44	0.45	0.44	59	132220	93	11	65	17	71
CRW_00653	-	0.90	0.88	0.91	118	94701	17	2	9	6	16
CRW_00654	-	0.68	0.68	0.69	84	78088	44	4	34	6	40
CRW_00655	-	0.75	0.74	0.77	92	89133	38	7	21	10	32
CRW_00656	-	0.57	0.57	0.57	74	90395	62	20	36	6	55
CRW_00657	-	0.78	0.78	0.77	106	105893	37	5	26	6	30
CRW_00658	-	0.49	0.50	0.48	51	74584	60	19	37	4	51
CRW_00659	-	0.50	0.52	0.48	32	32319	43	11	23	9	29
CRW_00660	-	0.52	0.52	0.53	31	22096	29	6	22	1	29
CRW_00661	-	0.07	0.08	0.06	4	24242	66	18	46	2	47
CRW_00662	-	0.35	0.37	0.34	24	28610	53	7	39	7	41
CRW_00663	-	0.00	0.00	0.00	0	26032	75	12	62	1	61
CRW_00664	-	0.21	0.24	0.19	19	53529	80	24	56	0	59
CRW_00665	-	0.11	0.13	0.11	6	23598	56	14	35	7	42
CRW_00666	-	0.50	0.49	0.51	62	96019	73	11	49	13	64
CRW_00668	-	0.49	0.51	0.47	76	163716	105	19	67	19	74
CRW_00669	-	0.39	0.39	0.39	46	97343	77	21	51	5	73
CRW_00670	Intron_gpI links to Rfam database...	0.57	0.58	0.56	70	70001	57	11	43	3	50
CRW_00671	Intron_gpI links to Rfam database...	0.79	0.77	0.80	90	62723	28	6	16	6	27
CRW_00672	Intron_gpI links to Rfam database...	0.76	0.78	0.74	87	72272	41	10	21	10	24
CRW_00673	-	0.57	0.61	0.53	64	100008	71	23	33	15	41
CRW_00674	Intron_gpI links to Rfam database...	0.68	0.67	0.70	83	83317	41	8	28	5	41
CRW_00676	Intron_gpI links to Rfam database...	0.59	0.58	0.60	67	93416	63	8	37	18	48
CRW_00677	-	0.54	0.57	0.51	60	71893	64	12	45	7	45
CRW_00679	-	0.35	0.36	0.34	38	76524	80	13	61	6	69
CRW_00681	-	0.55	0.62	0.49	69	112910	81	29	42	10	43
CRW_00685	-	0.37	0.40	0.35	42	156960	118	16	62	40	64
CRW_00686	-	0.56	0.58	0.54	72	95132	75	10	52	13	53
CRW_00687	-	0.68	0.74	0.63	49	28602	33	8	21	4	17
CRW_00688	-	0.87	0.86	0.89	49	21890	13	0	6	7	8
CRW_00689	-	0.68	0.73	0.64	56	33583	35	11	20	4	21
CRW_00690	-	0.70	0.71	0.69	49	33340	28	5	17	6	20
CRW_00691	-	0.54	0.52	0.56	35	27199	28	2	25	1	32
CRW_00692	Intron_gpI links to Rfam database...	0.33	0.34	0.32	31	68537	84	18	49	17	59
CRW_00693	-	0.57	0.59	0.55	72	89121	71	9	51	11	50
CRW_00694	-	0.69	0.68	0.70	83	85786	47	6	30	11	39
CRW_00699	-	0.60	0.60	0.61	75	91683	50	12	36	2	51
CRW_00700	-	0.69	0.67	0.71	99	180761	74	9	32	33	48
CRW_00703	-	0.66	0.68	0.64	45	40400	35	7	18	10	21
CRW_00714	-	0.48	0.51	0.45	55	186234	134	16	50	68	52
CRW_00715	-	0.83	0.87	0.80	90	69266	29	8	14	7	14
CRW_00716	-	0.69	0.74	0.64	66	193650	114	12	25	77	23
CRW_00717	-	0.68	0.70	0.67	103	153582	77	13	37	27	45
CRW_00718	-	0.70	0.72	0.68	137	189835	80	8	56	16	54
CRW_00719	-	0.57	0.57	0.56	52	230088	153	9	32	112	39
CRW_00720	-	0.11	0.12	0.10	11	208229	170	9	86	75	80
CRW_00721	-	0.60	0.63	0.57	43	58577	62	10	23	29	25
CRW_00764	-	0.10	0.10	0.10	20	252911	192	37	148	7	176
CRW_00775	-	0.12	0.14	0.12	29	314569	228	54	169	5	183
CRW_00815	-	0.68	0.72	0.65	113	159721	74	19	42	13	45
CRW_00816	-	0.38	0.41	0.36	53	143767	115	15	81	19	76
CRW_00820	-	0.69	0.68	0.71	98	136365	66	2	38	26	47
PDB_00072	-	0.55	0.58	0.52	121	148009	110	34	76	0	89
PDB_00078	-	0.74	0.70	0.78	80	49668	24	6	16	2	35
PDB_00079	-	0.52	0.49	0.55	70	121644	81	11	46	24	72
PDB_00278	-	0.14	0.14	0.14	10	24904	62	6	56	0	62
PDB_00403	-	0.51	0.48	0.53	74	124610	76	18	48	10	79
PDB_00423	-	0.22	0.23	0.22	17	26719	60	7	53	0	57
PDB_00701	-	0.10	0.10	0.10	11	45342	98	9	89	0	98
PDB_00747	-	0.74	0.64	0.85	51	24471	11	0	9	2	29
PDB_00827	Intron_gpI links to Rfam database...	0.76	0.67	0.86	54	26965	11	1	8	2	27
PDB_00917	-	0.52	0.46	0.58	44	35169	39	4	28	7	51
PDB_00919	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.57	49	44167	39	5	32	2	54
PDB_01129	-	0.45	0.48	0.43	34	35431	50	19	27	4	37
PDB_01157	-	0.33	0.32	0.35	31	49997	58	9	49	0	67
PDB_01166	-	0.54	0.54	0.54	114	181896	102	25	71	6	98
RFA_00597	Telomerase-vert links to Rfam database...	0.24	0.26	0.23	28	97782	111	22	71	18	81
RFA_00598	Telomerase-vert links to Rfam database...	0.62	0.58	0.66	59	84577	56	4	26	26	42
RFA_00599	Telomerase-vert links to Rfam database...	0.73	0.72	0.73	80	101366	58	10	19	29	31
RFA_00600	Telomerase-vert links to Rfam database...	0.62	0.70	0.55	70	120168	100	31	26	43	30
RFA_00601	Telomerase-vert links to Rfam database...	0.49	0.51	0.46	58	99110	84	27	40	17	56
RFA_00602	Telomerase-vert links to Rfam database...	0.66	0.68	0.65	79	101353	63	21	22	20	37
TMR_00007	tmRNA links to Rfam database...	0.41	0.38	0.45	41	61685	56	5	45	6	67
TMR_00008	tmRNA links to Rfam database...	0.50	0.51	0.49	54	65955	64	18	39	7	52
TMR_00010	tmRNA links to Rfam database...	0.26	0.25	0.27	24	57882	69	5	59	5	72
TMR_00012	tmRNA links to Rfam database...	0.41	0.43	0.39	35	64531	70	19	35	16	46
TMR_00014	tmRNA links to Rfam database...	0.67	0.67	0.67	74	68524	47	13	24	10	36
TMR_00017	tmRNA links to Rfam database...	0.50	0.49	0.51	50	67062	55	11	38	6	52
TMR_00018	tmRNA links to Rfam database...	0.34	0.36	0.32	33	64516	76	17	54	5	59
TMR_00028	tmRNA links to Rfam database...	0.39	0.39	0.38	38	62736	62	8	53	1	59
TMR_00030	tmRNA links to Rfam database...	0.35	0.36	0.34	40	75739	82	12	64	6	71
TMR_00034	tmRNA links to Rfam database...	0.62	0.61	0.64	67	59926	44	8	30	6	43
TMR_00035	tmRNA links to Rfam database...	0.39	0.43	0.37	42	67781	73	26	47	0	56
TMR_00036	tmRNA links to Rfam database...	0.56	0.54	0.59	55	90431	67	9	30	28	46
TMR_00038	tmRNA links to Rfam database...	0.22	0.22	0.23	24	71147	87	13	69	5	86
TMR_00042	tmRNA links to Rfam database...	0.34	0.35	0.33	34	62733	71	6	62	3	64
TMR_00046	tmRNA links to Rfam database...	0.27	0.28	0.27	27	62734	81	11	63	7	69
TMR_00047	tmRNA links to Rfam database...	0.30	0.33	0.28	19	48447	68	15	35	18	38
TMR_00048	tmRNA links to Rfam database...	0.26	0.27	0.24	26	64873	87	15	66	6	69
TMR_00049	tmRNA links to Rfam database...	0.57	0.59	0.55	51	63097	54	10	32	12	36
TMR_00051	tmRNA links to Rfam database...	0.75	0.72	0.78	68	65616	38	4	15	19	26
TMR_00055	tmRNA links to Rfam database...	0.25	0.26	0.23	30	78874	99	24	75	0	84
TMR_00057	tmRNA links to Rfam database...	0.18	0.22	0.15	17	73804	111	27	72	12	62
TMR_00061	tmRNA links to Rfam database...	0.28	0.27	0.29	27	59591	76	11	56	9	72
TMR_00062	tmRNA links to Rfam database...	0.56	0.56	0.57	58	78504	59	11	33	15	46
TMR_00064	tmRNA links to Rfam database...	0.57	0.60	0.53	62	76912	55	23	31	1	41
TMR_00065	tmRNA links to Rfam database...	0.52	0.53	0.52	56	76528	60	16	36	8	50
TMR_00067	tmRNA links to Rfam database...	0.38	0.39	0.37	45	82093	78	12	65	1	69
TMR_00073	tmRNA links to Rfam database...	0.58	0.54	0.62	63	65601	40	7	32	1	54
TMR_00076	tmRNA links to Rfam database...	0.38	0.40	0.37	40	70768	74	16	52	6	60
TMR_00080	tmRNA links to Rfam database...	0.39	0.40	0.38	38	70401	62	18	43	1	58
TMR_00081	tmRNA links to Rfam database...	0.58	0.58	0.58	62	67055	45	12	32	1	44
TMR_00082	tmRNA links to Rfam database...	0.69	0.71	0.67	68	67795	38	16	17	5	28
TMR_00083	tmRNA links to Rfam database...	0.46	0.46	0.47	48	68162	62	16	39	7	57
TMR_00092	tmRNA links to Rfam database...	0.42	0.47	0.39	47	67406	81	17	58	6	54
TMR_00093	tmRNA links to Rfam database...	0.37	0.37	0.37	38	64158	74	13	52	9	64
TMR_00096	tmRNA links to Rfam database...	0.48	0.50	0.46	50	64872	68	11	47	10	50
TMR_00101	tmRNA links to Rfam database...	0.45	0.45	0.44	48	64153	69	15	45	9	59
TMR_00102	tmRNA links to Rfam database...	0.26	0.29	0.25	29	64143	97	14	75	8	72
TMR_00103	tmRNA links to Rfam database...	0.57	0.58	0.55	63	64147	57	11	40	6	45
TMR_00104	-	0.12	0.14	0.11	10	66705	92	30	50	12	60
TMR_00106	tmRNA links to Rfam database...	0.44	0.45	0.44	54	89976	81	18	52	11	66
TMR_00109	tmRNA links to Rfam database...	0.53	0.53	0.52	65	88286	68	16	43	9	57
TMR_00111	tmRNA links to Rfam database...	0.41	0.43	0.40	53	90391	84	19	62	3	69
TMR_00116	tmRNA links to Rfam database...	0.77	0.72	0.82	75	64889	32	4	12	16	29
TMR_00117	tmRNA links to Rfam database...	0.69	0.68	0.70	80	80085	44	6	29	9	38
TMR_00118	tmRNA links to Rfam database...	0.47	0.45	0.48	54	81294	66	6	52	8	66
TMR_00119	tmRNA links to Rfam database...	0.33	0.32	0.34	33	71914	68	8	55	5	71
TMR_00123	tmRNA links to Rfam database...	0.46	0.48	0.45	48	66324	63	13	45	5	53
TMR_00124	tmRNA links to Rfam database...	0.62	0.63	0.61	62	70399	57	14	25	18	36
TMR_00125	tmRNA links to Rfam database...	0.41	0.40	0.42	40	64166	61	11	44	6	59
TMR_00127	tmRNA links to Rfam database...	0.48	0.47	0.49	46	62741	62	3	45	14	51
TMR_00128	tmRNA links to Rfam database...	0.39	0.40	0.38	38	60975	62	17	45	0	58
TMR_00131	tmRNA links to Rfam database...	0.49	0.46	0.53	46	64893	52	3	38	11	53
TMR_00135	tmRNA links to Rfam database...	0.33	0.33	0.32	33	62732	78	15	55	8	66
TMR_00136	tmRNA links to Rfam database...	0.21	0.22	0.21	22	74586	86	21	62	3	79
TMR_00137	tmRNA links to Rfam database...	0.24	0.25	0.24	22	60983	79	12	58	9	67
TMR_00139	tmRNA links to Rfam database...	0.59	0.62	0.57	56	62029	53	19	24	10	35
TMR_00140	tmRNA links to Rfam database...	0.52	0.52	0.53	52	73822	68	5	41	22	48
TMR_00142	tmRNA links to Rfam database...	0.55	0.56	0.55	57	70772	62	10	37	15	45
TMR_00143	tmRNA links to Rfam database...	0.49	0.49	0.50	50	64519	62	10	41	11	53
TMR_00144	tmRNA links to Rfam database...	0.26	0.27	0.25	28	74193	89	18	66	5	75
TMR_00146	tmRNA links to Rfam database...	0.79	0.88	0.71	37	32079	47	11	4	32	5
TMR_00150	tmRNA links to Rfam database...	0.71	0.71	0.71	30	43029	60	2	10	48	12
TMR_00152	tmRNA links to Rfam database...	0.26	0.26	0.27	30	81293	94	12	71	11	85
TMR_00155	tmRNA links to Rfam database...	0.56	0.53	0.59	55	61683	46	9	29	8	49
TMR_00156	tmRNA links to Rfam database...	0.41	0.39	0.42	38	60288	56	8	44	4	59
TMR_00158	tmRNA links to Rfam database...	0.53	0.54	0.52	53	60625	52	9	39	4	46
TMR_00159	tmRNA links to Rfam database...	0.55	0.58	0.54	53	62029	57	14	32	11	39
TMR_00160	tmRNA links to Rfam database...	0.44	0.45	0.43	43	64520	65	14	43	8	52
TMR_00164	tmRNA links to Rfam database...	0.42	0.42	0.42	44	66691	70	7	53	10	62
TMR_00165	tmRNA links to Rfam database...	0.29	0.30	0.29	29	61677	79	10	60	9	68
TMR_00166	tmRNA links to Rfam database...	0.44	0.43	0.46	43	61683	59	8	42	9	58
TMR_00168	tmRNA links to Rfam database...	0.71	0.68	0.74	78	60969	32	4	24	4	36
TMR_00173	tmRNA links to Rfam database...	0.31	0.36	0.27	15	42139	69	15	26	28	27
TMR_00179	tmRNA links to Rfam database...	0.58	0.57	0.58	56	67065	55	7	33	15	42
TMR_00180	tmRNA links to Rfam database...	0.63	0.64	0.62	63	67059	54	8	31	15	36
TMR_00182	tmRNA links to Rfam database...	0.14	0.15	0.14	15	66322	98	13	80	5	87
TMR_00183	tmRNA links to Rfam database...	0.25	0.24	0.25	25	63090	81	5	70	6	78
TMR_00184	tmRNA links to Rfam database...	0.41	0.42	0.40	43	63082	73	8	57	8	59
TMR_00193	tmRNA links to Rfam database...	0.39	0.43	0.36	34	59245	74	16	45	13	46
TMR_00194	tmRNA links to Rfam database...	0.42	0.43	0.42	40	62739	65	11	45	9	53
TMR_00196	tmRNA links to Rfam database...	0.38	0.36	0.39	35	60986	59	7	47	5	62
TMR_00199	tmRNA links to Rfam database...	0.57	0.60	0.54	55	62733	55	20	27	8	37
TMR_00200	-	0.53	0.51	0.56	38	41548	41	6	24	11	37
TMR_00204	tmRNA links to Rfam database...	0.52	0.54	0.50	52	60275	58	22	29	7	45
TMR_00207	tmRNA links to Rfam database...	0.34	0.35	0.33	36	72280	79	10	64	5	67
TMR_00223	tmRNA links to Rfam database...	0.25	0.26	0.25	25	64160	80	19	57	4	70
TMR_00224	tmRNA links to Rfam database...	0.47	0.45	0.49	45	64889	54	9	37	8	56
TMR_00226	tmRNA links to Rfam database...	0.48	0.47	0.51	49	69654	54	9	39	6	56
TMR_00227	tmRNA links to Rfam database...	0.37	0.39	0.35	39	70013	76	12	61	3	62
TMR_00228	tmRNA links to Rfam database...	0.36	0.38	0.34	41	88288	86	24	57	5	67
TMR_00234	tmRNA links to Rfam database...	0.31	0.33	0.30	34	58881	84	12	69	3	68
TMR_00238	tmRNA links to Rfam database...	0.31	0.33	0.29	33	84553	86	20	60	6	68
TMR_00239	tmRNA links to Rfam database...	0.51	0.51	0.52	49	61681	48	8	38	2	47
TMR_00240	tmRNA links to Rfam database...	0.57	0.61	0.54	52	63093	51	21	24	6	33
TMR_00246	-	0.52	0.59	0.47	20	78167	120	6	17	97	14
TMR_00248	tmRNA links to Rfam database...	0.14	0.18	0.11	7	54219	102	24	35	43	31
TMR_00257	tmRNA links to Rfam database...	0.12	0.11	0.13	11	67074	81	6	70	5	87
TMR_00259	tmRNA links to Rfam database...	0.57	0.57	0.56	59	67791	52	12	34	6	44
TMR_00261	tmRNA links to Rfam database...	0.58	0.59	0.57	60	66690	54	13	32	9	41
TMR_00262	tmRNA links to Rfam database...	0.50	0.52	0.47	54	74191	64	18	42	4	50
TMR_00271	tmRNA links to Rfam database...	0.59	0.56	0.61	51	64178	43	9	23	11	40
TMR_00274	tmRNA links to Rfam database...	0.30	0.30	0.30	32	66687	84	16	60	8	73
TMR_00278	tmRNA links to Rfam database...	0.51	0.53	0.49	54	67786	72	8	48	16	48
TMR_00279	tmRNA links to Rfam database...	0.56	0.57	0.56	54	68909	62	7	36	19	40
TMR_00280	tmRNA links to Rfam database...	0.51	0.51	0.51	52	65965	68	4	45	19	49
TMR_00283	tmRNA links to Rfam database...	0.47	0.48	0.46	46	65242	65	7	46	12	50
TMR_00289	tmRNA links to Rfam database...	0.54	0.56	0.52	55	67056	67	9	41	17	43
TMR_00290	tmRNA links to Rfam database...	0.46	0.46	0.47	42	64171	59	4	44	11	50
TMR_00296	tmRNA links to Rfam database...	0.32	0.33	0.31	32	68904	78	17	53	8	66
TMR_00298	tmRNA links to Rfam database...	0.50	0.51	0.49	52	68158	65	12	43	10	49
TMR_00300	tmRNA links to Rfam database...	0.54	0.56	0.53	63	70381	67	14	42	11	49
TMR_00301	tmRNA links to Rfam database...	0.40	0.43	0.38	41	82108	75	21	45	9	55
TMR_00302	tmRNA links to Rfam database...	0.29	0.30	0.28	28	77321	78	26	46	6	66
TMR_00305	tmRNA links to Rfam database...	0.65	0.65	0.66	66	60975	48	10	24	14	36
TMR_00306	tmRNA links to Rfam database...	0.46	0.44	0.48	47	64164	54	13	37	4	59
TMR_00310	tmRNA links to Rfam database...	0.31	0.31	0.31	30	63806	76	11	56	9	68
TMR_00317	tmRNA links to Rfam database...	0.62	0.64	0.61	65	68158	47	10	32	5	37
TMR_00331	tmRNA links to Rfam database...	0.70	0.73	0.67	60	66705	48	9	21	18	22
TMR_00332	tmRNA links to Rfam database...	0.53	0.51	0.55	50	67070	47	10	31	6	49
TMR_00334	tmRNA links to Rfam database...	0.72	0.68	0.76	69	66704	36	3	19	14	32
TMR_00337	tmRNA links to Rfam database...	0.54	0.54	0.54	64	82909	61	14	41	6	55
TMR_00340	tmRNA links to Rfam database...	0.55	0.57	0.53	46	64175	67	9	31	27	35
TMR_00341	tmRNA links to Rfam database...	0.35	0.37	0.33	34	63088	71	19	49	3	58
TMR_00343	tmRNA links to Rfam database...	0.47	0.45	0.49	47	64885	56	5	43	8	58
TMR_00345	tmRNA links to Rfam database...	0.65	0.63	0.68	65	63807	41	10	21	10	39
TMR_00346	tmRNA links to Rfam database...	0.25	0.26	0.26	24	64167	77	17	53	7	70
TMR_00348	tmRNA links to Rfam database...	0.29	0.30	0.28	30	77314	95	12	65	18	69
TMR_00352	tmRNA links to Rfam database...	0.35	0.40	0.31	30	95170	99	22	44	33	45
TMR_00353	tmRNA links to Rfam database...	0.42	0.47	0.39	49	84128	98	21	57	20	56
TMR_00357	tmRNA links to Rfam database...	0.38	0.37	0.38	34	82939	75	16	39	20	58
TMR_00358	tmRNA links to Rfam database...	0.46	0.49	0.42	49	74962	72	30	37	5	50
TMR_00361	-	0.30	0.38	0.23	27	93413	106	34	54	18	45
TMR_00366	tmRNA links to Rfam database...	0.57	0.55	0.59	55	67803	49	8	30	11	45
TMR_00372	tmRNA links to Rfam database...	0.60	0.61	0.58	59	70399	61	6	36	19	37
TMR_00374	tmRNA links to Rfam database...	0.25	0.26	0.24	24	81711	90	17	58	15	68
TMR_00375	tmRNA links to Rfam database...	0.54	0.56	0.52	55	73430	64	16	35	13	43
TMR_00376	tmRNA links to Rfam database...	0.67	0.69	0.65	66	74590	57	13	22	22	29
TMR_00378	tmRNA links to Rfam database...	0.26	0.28	0.25	27	67786	94	24	59	11	70
TMR_00383	tmRNA links to Rfam database...	0.41	0.41	0.41	41	66694	68	14	46	8	59
TMR_00384	tmRNA links to Rfam database...	0.29	0.29	0.30	31	65599	79	4	69	6	77
TMR_00393	tmRNA links to Rfam database...	0.62	0.64	0.60	34	53244	58	7	16	35	19
TMR_00395	tmRNA links to Rfam database...	0.52	0.50	0.56	54	64523	47	6	37	4	55
TMR_00398	tmRNA links to Rfam database...	0.44	0.43	0.44	46	65236	63	7	52	4	60
TMR_00399	tmRNA links to Rfam database...	0.35	0.34	0.36	32	64891	64	12	45	7	62
TMR_00404	tmRNA links to Rfam database...	0.36	0.40	0.33	37	67416	86	29	46	11	55
TMR_00408	tmRNA links to Rfam database...	0.58	0.60	0.56	53	65972	55	13	28	14	35
TMR_00409	tmRNA links to Rfam database...	0.77	0.85	0.70	39	68579	92	10	7	75	7
TMR_00411	tmRNA links to Rfam database...	0.69	0.72	0.66	63	60979	51	13	20	18	24
TMR_00415	tmRNA links to Rfam database...	0.43	0.44	0.42	44	67057	63	12	48	3	57
TMR_00419	tmRNA links to Rfam database...	0.55	0.55	0.56	61	81701	70	11	37	22	50
TMR_00422	tmRNA links to Rfam database...	0.49	0.52	0.47	48	67793	75	13	42	20	44
TMR_00423	tmRNA links to Rfam database...	0.08	0.10	0.07	7	63809	94	21	66	7	66
TMR_00427	tmRNA links to Rfam database...	0.46	0.44	0.48	43	67439	54	11	35	8	54
TMR_00429	tmRNA links to Rfam database...	0.55	0.52	0.58	57	74592	53	13	29	11	52
TMR_00430	tmRNA links to Rfam database...	0.23	0.23	0.22	25	82509	87	17	70	0	84
TMR_00431	tmRNA links to Rfam database...	0.67	0.69	0.64	38	51944	69	7	14	48	17
TMR_00432	tmRNA links to Rfam database...	0.39	0.41	0.37	43	79683	81	16	58	7	61
TMR_00433	tmRNA links to Rfam database...	0.47	0.49	0.45	52	80084	66	11	53	2	54
TMR_00439	tmRNA links to Rfam database...	0.49	0.50	0.47	51	68526	68	22	36	10	50
TMR_00441	tmRNA links to Rfam database...	0.10	0.12	0.09	10	62020	107	29	69	9	73
TMR_00443	tmRNA links to Rfam database...	0.50	0.48	0.53	50	67066	52	13	32	7	54
TMR_00448	tmRNA links to Rfam database...	0.34	0.33	0.37	30	62046	59	7	45	7	62
TMR_00451	tmRNA links to Rfam database...	0.18	0.19	0.17	17	63445	88	21	63	4	72
TMR_00457	tmRNA links to Rfam database...	0.43	0.44	0.43	45	78501	65	18	42	5	57
TMR_00458	tmRNA links to Rfam database...	0.46	0.44	0.47	41	63459	54	11	35	8	52
TMR_00460	tmRNA links to Rfam database...	0.43	0.43	0.42	46	79292	73	14	49	10	60
TMR_00465	tmRNA links to Rfam database...	0.26	0.28	0.24	26	64154	85	28	53	4	68
TMR_00469	tmRNA links to Rfam database...	0.51	0.53	0.50	53	64514	57	18	35	4	47
TMR_00472	tmRNA links to Rfam database...	0.46	0.45	0.46	44	64524	64	10	42	12	53
TMR_00478	tmRNA links to Rfam database...	0.18	0.20	0.17	20	71890	107	21	79	7	79
TMR_00498	tmRNA links to Rfam database...	0.33	0.34	0.31	34	68898	84	16	58	10	65
TMR_00499	tmRNA links to Rfam database...	0.20	0.21	0.19	21	64509	97	11	79	7	78
TMR_00501	tmRNA links to Rfam database...	0.45	0.47	0.43	43	62382	63	13	43	7	49
TMR_00502	tmRNA links to Rfam database...	0.22	0.24	0.20	22	75355	100	18	71	11	71
TMR_00503	tmRNA links to Rfam database...	0.42	0.41	0.43	46	67788	69	5	57	7	65
TMR_00519	tmRNA links to Rfam database...	0.40	0.38	0.42	36	63105	64	10	39	15	59
TMR_00520	tmRNA links to Rfam database...	0.51	0.49	0.52	49	63096	56	15	30	11	50
TMR_00522	tmRNA links to Rfam database...	0.39	0.39	0.38	38	63091	70	16	45	9	59
TMR_00528	tmRNA links to Rfam database...	0.30	0.29	0.31	28	63099	73	18	45	10	69
TMR_00540	tmRNA links to Rfam database...	0.36	0.35	0.37	36	73438	74	14	48	12	68
TMR_00541	tmRNA links to Rfam database...	0.40	0.41	0.38	43	61664	79	8	61	10	62
TMR_00544	tmRNA links to Rfam database...	0.50	0.52	0.49	56	89562	72	15	43	14	52
TMR_00547	tmRNA links to Rfam database...	0.39	0.40	0.38	40	65236	68	5	60	3	60
TMR_00553	tmRNA links to Rfam database...	0.41	0.43	0.40	35	48117	59	16	37	6	46
TMR_00559	tmRNA links to Rfam database...	0.38	0.38	0.40	38	62385	62	11	47	4	63
TMR_00560	tmRNA links to Rfam database...	0.60	0.60	0.60	59	60976	52	4	36	12	39
TMR_00562	tmRNA links to Rfam database...	0.35	0.34	0.36	35	72674	71	15	47	9	67
TMR_00563	tmRNA links to Rfam database...	0.62	0.59	0.64	61	75371	46	11	23	12	42
TMR_00566	tmRNA links to Rfam database...	0.64	0.61	0.67	61	60635	39	4	26	9	39
TMR_00568	tmRNA links to Rfam database...	0.31	0.30	0.31	30	60629	73	6	61	6	69
TMR_00570	tmRNA links to Rfam database...	0.55	0.56	0.55	54	60280	54	7	37	10	43
TMR_00571	tmRNA links to Rfam database...	0.62	0.61	0.64	60	60632	46	6	28	12	39
TMR_00576	tmRNA links to Rfam database...	0.62	0.61	0.63	62	60279	46	14	23	9	40
TMR_00579	tmRNA links to Rfam database...	0.25	0.28	0.23	25	80494	92	17	65	10	65
TMR_00580	tmRNA links to Rfam database...	0.69	0.66	0.72	66	60634	37	3	23	11	34
TMR_00581	tmRNA links to Rfam database...	0.24	0.22	0.25	22	62393	72	7	59	6	76
TMR_00584	tmRNA links to Rfam database...	0.58	0.57	0.59	55	60982	53	5	33	15	42
TMR_00586	tmRNA links to Rfam database...	0.52	0.51	0.54	49	60984	52	8	34	10	48
TMR_00587	tmRNA links to Rfam database...	0.65	0.63	0.66	63	61330	42	6	26	10	37
TMR_00588	tmRNA links to Rfam database...	0.25	0.27	0.24	27	77308	92	22	64	6	74
TMR_00594	tmRNA links to Rfam database...	0.16	0.17	0.15	18	79278	111	26	79	6	86
TMR_00596	tmRNA links to Rfam database...	0.29	0.28	0.30	27	78120	78	11	52	15	68
TMR_00599	tmRNA links to Rfam database...	0.24	0.28	0.20	20	63091	87	28	51	8	52
TMR_00600	tmRNA links to Rfam database...	0.32	0.32	0.32	37	79684	81	14	65	2	78
TMR_00601	tmRNA links to Rfam database...	0.31	0.33	0.30	14	58949	90	13	20	57	28
TMR_00603	tmRNA links to Rfam database...	0.58	0.60	0.57	26	60332	86	2	18	66	17
TMR_00604	tmRNA links to Rfam database...	0.66	0.63	0.69	71	62732	33	4	28	1	41
TMR_00605	tmRNA links to Rfam database...	0.54	0.52	0.55	56	74204	51	14	31	6	52
TMR_00606	tmRNA links to Rfam database...	0.41	0.40	0.43	43	68905	66	6	52	8	64
TMR_00609	tmRNA links to Rfam database...	0.69	0.68	0.70	77	63436	41	5	28	8	36
TMR_00610	tmRNA links to Rfam database...	0.64	0.63	0.65	66	62027	48	7	28	13	38
TMR_00611	tmRNA links to Rfam database...	0.46	0.48	0.44	49	61314	63	14	48	1	53
TMR_00612	tmRNA links to Rfam database...	0.36	0.37	0.36	38	60619	76	9	60	7	66
TMR_00614	tmRNA links to Rfam database...	0.72	0.69	0.75	72	60979	33	3	21	9	32
TMR_00615	tmRNA links to Rfam database...	0.58	0.56	0.60	54	63813	48	9	27	12	42
TMR_00616	tmRNA links to Rfam database...	0.39	0.40	0.38	40	67057	69	13	51	5	59
TMR_00617	tmRNA links to Rfam database...	0.48	0.50	0.45	29	34652	45	9	26	10	29
TMR_00623	tmRNA links to Rfam database...	0.43	0.42	0.44	45	61322	65	2	56	7	63
TMR_00624	tmRNA links to Rfam database...	0.68	0.69	0.67	75	62369	48	9	28	11	33
TMR_00625	tmRNA links to Rfam database...	0.41	0.42	0.40	45	78890	75	19	49	7	61
TMR_00626	tmRNA links to Rfam database...	0.27	0.27	0.27	29	67790	83	15	62	6	80
TMR_00680	tmRNA links to Rfam database...	0.40	0.39	0.41	39	67801	67	10	46	11	60
TMR_00681	tmRNA links to Rfam database...	0.37	0.37	0.37	36	65968	71	10	52	9	61
TMR_00683	tmRNA links to Rfam database...	0.16	0.18	0.14	18	82900	118	25	85	8	82
TMR_00686	tmRNA links to Rfam database...	0.44	0.44	0.43	48	71141	76	16	48	12	60
TMR_00687	tmRNA links to Rfam database...	0.57	0.56	0.59	62	71526	51	10	33	8	49
TMR_00696	tmRNA links to Rfam database...	0.17	0.18	0.17	21	84953	116	18	86	12	93
TMR_00698	tmRNA links to Rfam database...	0.48	0.45	0.51	47	63098	48	12	33	3	57
TMR_00699	tmRNA links to Rfam database...	0.45	0.42	0.48	43	67072	52	7	39	6	59
TMR_00702	tmRNA links to Rfam database...	0.40	0.38	0.42	38	67071	58	13	39	6	62
TMR_00703	tmRNA links to Rfam database...	0.48	0.47	0.48	47	67430	56	11	40	5	52
TMR_00706	tmRNA links to Rfam database...	0.57	0.52	0.61	54	66342	38	7	27	4	49
TMR_00711	tmRNA links to Rfam database...	0.61	0.62	0.60	61	67795	51	14	26	11	37
TMR_00712	tmRNA links to Rfam database...	0.31	0.33	0.30	36	78486	84	17	67	0	73
TMR_00716	tmRNA links to Rfam database...	0.29	0.29	0.28	29	62733	77	13	60	4	71

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of ContextFold - scored higher in this pairwise comparison

1. Total counts & total scores for ContextFold

2. Individual counts for ContextFold [ download as .csv ]

Performance of ProbKnot - scored lower in this pairwise comparison

1. Total counts & total scores for ProbKnot

2. Individual counts for ProbKnot [ download as .csv ]