CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Contrafold		PknotsRG
MCC	0.554	>	0.476
Average MCC ± 95% Confidence Intervals	0.550 ± 0.014	>	0.473 ± 0.014
Sensitivity	0.540	>	0.478
Positive Predictive Value	0.569	>	0.475
Total TP	33968	>	30067
Total TN	43339624	>	43336046
Total FP	31952	<	38522
Total FP CONTRA	4632	<	5928
Total FP INCONS	21113	<	27296
Total FP COMP	6207	>	5298
Total FN	28907	<	32808
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Contrafold and PknotsRG. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Contrafold and PknotsRG).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Contrafold and PknotsRG).
Comparison of average Matthews Correlation Coefficients (MCCs) for Contrafold and PknotsRG. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Contrafold and PknotsRG).

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Performance of Contrafold - scored higher in this pairwise comparison

1. Total counts & total scores for Contrafold

Total Base Pair Counts
Total TP	33968
Total TN	43339624
Total FP	31952
Total FP CONTRA	4632
Total FP INCONS	21113
Total FP COMP	6207
Total FN	28907

Total Scores
MCC	0.554
Average MCC ± 95% Confidence Intervals	0.550 ± 0.014
Sensitivity	0.540
Positive Predictive Value	0.569
Nr of predictions	610

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2. Individual counts for Contrafold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.80	0.77	0.83	58	34121	21	3	9	9	17
ASE_00002	RNaseP_arch links to Rfam database...	0.59	0.56	0.61	41	35444	30	2	24	4	32
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	66	47803	28	5	21	2	31
ASE_00005	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	65	57876	30	0	29	1	52
ASE_00006	RNaseP_bact_a links to Rfam database...	0.52	0.52	0.53	48	47495	47	7	36	4	45
ASE_00007	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.57	54	59591	45	1	39	5	56
ASE_00009	RNaseP_arch links to Rfam database...	0.66	0.64	0.68	43	26043	23	1	19	3	24
ASE_00012	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	61	73815	53	2	42	9	62
ASE_00014	RNaseP_arch links to Rfam database...	0.53	0.53	0.53	56	54179	54	6	44	4	50
ASE_00017	RNaseP_nuc links to Rfam database...	0.12	0.14	0.11	9	50957	94	18	56	20	55
ASE_00018	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.66	79	80481	42	2	39	1	55
ASE_00020	RNaseP_bact_a links to Rfam database...	0.68	0.62	0.74	78	73815	31	1	26	4	48
ASE_00021	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.69	97	104056	50	3	40	7	63
ASE_00022	RNaseP_bact_b links to Rfam database...	0.33	0.31	0.35	39	82918	77	2	69	6	85
ASE_00023	RNaseP_bact_a links to Rfam database...	0.68	0.68	0.68	86	84129	45	4	36	5	41
ASE_00025	RNaseP_nuc links to Rfam database...	0.35	0.38	0.32	27	78521	109	13	45	51	44
ASE_00026	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	57	59589	44	3	36	5	53
ASE_00028	RNaseP_bact_b links to Rfam database...	0.69	0.66	0.72	83	84551	44	4	28	12	43
ASE_00029	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.68	75	82917	40	7	29	4	47
ASE_00030	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.77	96	85367	30	4	24	2	49
ASE_00031	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.61	70	86622	51	2	42	7	56
ASE_00032	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	61	80097	47	3	39	5	57
ASE_00033	RNaseP_bact_a links to Rfam database...	0.52	0.46	0.60	56	64886	41	1	37	3	65
ASE_00035	RNaseP_bact_a links to Rfam database...	0.40	0.36	0.43	43	70401	62	4	52	6	75
ASE_00036	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.67	76	75742	43	7	30	6	56
ASE_00037	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.69	58	59256	28	1	25	2	52
ASE_00038	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	51	53540	41	6	31	4	50
ASE_00040	RNaseP_bact_a links to Rfam database...	0.14	0.14	0.15	19	78875	114	8	101	5	114
ASE_00041	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.73	66	57539	29	2	23	4	42
ASE_00042	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	79	89969	57	2	50	5	66
ASE_00044	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	70	54513	37	5	27	5	35
ASE_00046	RNaseP_bact_a links to Rfam database...	0.64	0.55	0.73	57	50325	23	1	20	2	46
ASE_00047	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.62	65	74200	42	1	39	2	65
ASE_00052	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.71	62	61338	29	0	25	4	50
ASE_00053	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.72	87	79280	39	10	24	5	46
ASE_00056	-	0.41	0.40	0.43	29	30808	46	4	35	7	43
ASE_00057	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	89	82091	41	9	26	6	45
ASE_00064	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	50	45374	37	2	25	10	39
ASE_00066	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	75	72276	39	3	36	0	55
ASE_00068	RNaseP_bact_a links to Rfam database...	0.69	0.61	0.79	52	37609	14	1	13	0	33
ASE_00069	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	83	82905	45	4	36	5	57
ASE_00074	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	58	67781	59	7	50	2	61
ASE_00075	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.80	111	108673	34	3	24	7	51
ASE_00076	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.50	52	68160	56	4	49	3	66
ASE_00077	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.78	58	45076	22	3	13	6	28
ASE_00078	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.81	55	43003	20	0	13	7	28
ASE_00079	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.60	53	55522	39	3	33	3	47
ASE_00080	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	70	71517	49	6	38	5	53
ASE_00081	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	56	49682	34	5	27	2	41
ASE_00082	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	83	70405	24	1	11	12	33
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	78	62385	25	0	18	7	32
ASE_00084	RNaseP_bact_a links to Rfam database...	0.74	0.73	0.76	72	53533	30	2	21	7	27
ASE_00087	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.76	103	88275	33	4	28	1	41
ASE_00089	-	0.50	0.46	0.55	36	31309	30	2	28	0	43
ASE_00090	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.66	68	55508	43	4	31	8	33
ASE_00092	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.85	90	63440	23	6	10	7	23
ASE_00096	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.80	71	63457	20	0	18	2	44
ASE_00099	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	61	64510	51	5	44	2	59
ASE_00100	RNaseP_nuc links to Rfam database...	0.26	0.28	0.24	21	82127	115	15	52	48	55
ASE_00102	RNaseP_bact_a links to Rfam database...	0.46	0.43	0.50	72	117711	76	7	65	4	94
ASE_00104	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.73	82	64148	33	4	27	2	37
ASE_00105	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.57	55	64165	49	7	34	8	56
ASE_00107	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	86	73030	38	4	33	1	41
ASE_00108	RNaseP_nuc links to Rfam database...	0.49	0.51	0.48	32	46904	72	10	25	37	31
ASE_00111	RNaseP_nuc links to Rfam database...	0.18	0.21	0.15	12	50008	84	20	46	18	45
ASE_00112	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.81	83	75364	29	4	15	10	33
ASE_00115	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.69	70	54513	40	6	26	8	31
ASE_00116	RNaseP_arch links to Rfam database...	0.46	0.42	0.50	28	31570	31	0	28	3	38
ASE_00118	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	63	60631	35	4	28	3	39
ASE_00119	RNaseP_bact_a links to Rfam database...	0.73	0.72	0.74	78	62729	31	3	25	3	30
ASE_00120	RNaseP_arch links to Rfam database...	0.60	0.57	0.64	54	46886	31	6	25	0	40
ASE_00121	RNaseP_arch links to Rfam database...	0.28	0.27	0.29	25	45063	64	6	56	2	67
ASE_00122	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.71	57	43285	25	1	22	2	31
ASE_00123	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	46	38427	34	4	26	4	39
ASE_00125	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	62	39264	22	3	11	8	26
ASE_00126	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.64	48	40395	34	2	25	7	34
ASE_00128	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.88	72	53219	16	1	9	6	28
ASE_00129	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	73	62737	30	1	24	5	38
ASE_00131	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.79	55	39270	25	1	14	10	30
ASE_00132	RNaseP_bact_a links to Rfam database...	0.57	0.48	0.67	46	50334	25	2	21	2	49
ASE_00134	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.46	39	50318	50	3	43	4	56
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.69	62	63100	35	1	27	7	47
ASE_00136	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.66	50	48129	37	1	25	11	42
ASE_00137	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	74	48426	20	4	12	4	24
ASE_00138	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.63	45	40399	27	7	19	1	36
ASE_00139	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.74	61	54203	25	0	21	4	43
ASE_00140	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.83	88	70770	19	3	15	1	37
ASE_00142	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.62	72	67045	50	5	39	6	50
ASE_00145	RNaseP_arch links to Rfam database...	0.60	0.59	0.60	66	70015	50	7	37	6	45
ASE_00146	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.53	60	70762	55	7	47	1	64
ASE_00148	RNaseP_arch links to Rfam database...	0.79	0.78	0.81	120	112426	34	5	24	5	34
ASE_00151	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	44	51909	52	11	39	2	54
ASE_00153	RNaseP_nuc links to Rfam database...	0.41	0.42	0.40	31	57553	80	7	39	34	42
ASE_00154	RNaseP_arch links to Rfam database...	0.74	0.72	0.76	77	65240	31	2	22	7	30
ASE_00155	RNaseP_arch links to Rfam database...	0.60	0.58	0.61	83	93392	56	4	49	3	59
ASE_00163	RNaseP_bact_a links to Rfam database...	0.34	0.32	0.37	30	53219	62	4	48	10	63
ASE_00165	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.77	67	52888	21	4	16	1	34
ASE_00168	RNaseP_nuc links to Rfam database...	0.32	0.38	0.27	24	60636	84	21	45	18	40
ASE_00169	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	53	57200	43	1	37	5	54
ASE_00170	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.70	57	48746	26	4	21	1	36
ASE_00171	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.77	67	48429	24	5	15	4	27
ASE_00172	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.88	82	58903	15	2	9	4	24
ASE_00174	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	63	60979	34	7	26	1	46
ASE_00175	RNaseP_bact_a links to Rfam database...	0.35	0.34	0.36	36	59932	73	3	60	10	71
ASE_00176	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.62	56	59941	40	4	30	6	54
ASE_00179	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.81	58	44181	21	3	11	7	26
ASE_00180	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.85	71	51276	18	4	9	5	29
ASE_00181	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	45	57532	55	5	48	2	61
ASE_00182	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	86	84132	38	2	35	1	50
ASE_00183	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.72	79	61315	40	2	29	9	34
ASE_00184	RNaseP_bact_a links to Rfam database...	0.76	0.77	0.75	79	54509	30	5	22	3	23
ASE_00185	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.80	88	73426	28	2	20	6	40
ASE_00186	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.79	95	78882	35	3	23	9	37
ASE_00187	RNaseP_arch links to Rfam database...	0.38	0.37	0.40	42	68531	68	5	57	6	73
ASE_00189	RNaseP_bact_b links to Rfam database...	0.59	0.53	0.66	54	63108	35	0	28	7	48
ASE_00190	RNaseP_bact_b links to Rfam database...	0.53	0.46	0.61	41	45384	33	3	23	7	49
ASE_00192	RNaseP_bact_b links to Rfam database...	0.65	0.61	0.70	81	84551	40	5	29	6	52
ASE_00194	RNaseP_bact_b links to Rfam database...	0.48	0.45	0.50	54	73429	59	4	49	6	65
ASE_00195	-	0.65	0.60	0.71	80	86208	35	2	30	3	53
ASE_00196	RNaseP_arch links to Rfam database...	0.75	0.76	0.74	57	31549	26	2	18	6	18
ASE_00197	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.66	85	89125	49	3	40	6	60
ASE_00198	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.73	70	52554	30	4	22	4	32
ASE_00203	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.82	71	46578	22	4	12	6	25
ASE_00204	RNaseP_bact_b links to Rfam database...	0.57	0.54	0.61	60	67798	46	5	33	8	52
ASE_00205	RNaseP_arch links to Rfam database...	0.45	0.46	0.45	41	45964	60	7	44	9	49
ASE_00209	RNaseP_arch links to Rfam database...	0.56	0.51	0.61	45	42997	31	3	26	2	43
ASE_00210	RNaseP_arch links to Rfam database...	0.58	0.60	0.57	39	27192	31	7	23	1	26
ASE_00212	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.71	95	93828	46	3	35	8	53
ASE_00213	RNaseP_arch links to Rfam database...	0.58	0.58	0.58	38	27196	30	5	22	3	28
ASE_00214	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.82	80	56183	27	3	14	10	23
ASE_00215	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	50	48429	39	4	33	2	49
ASE_00216	RNaseP_bact_a links to Rfam database...	0.58	0.59	0.58	48	39257	36	9	26	1	34
ASE_00217	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	35	40394	47	2	39	6	55
ASE_00221	RNaseP_bact_a links to Rfam database...	0.66	0.60	0.72	70	64523	31	1	26	4	47
ASE_00222	RNaseP_arch links to Rfam database...	0.72	0.71	0.74	111	111950	46	7	33	6	46
ASE_00227	RNaseP_bact_a links to Rfam database...	0.31	0.29	0.34	39	78887	77	6	71	0	94
ASE_00228	RNaseP_bact_a links to Rfam database...	0.79	0.78	0.80	67	46887	20	8	9	3	19
ASE_00229	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	56	42407	28	4	19	5	31
ASE_00231	RNaseP_bact_a links to Rfam database...	0.77	0.75	0.79	72	47804	20	3	16	1	24
ASE_00232	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.64	54	38418	33	10	21	2	30
ASE_00234	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.60	64	75360	47	3	39	5	65
ASE_00237	RNaseP_nuc links to Rfam database...	0.08	0.09	0.07	5	45683	79	14	51	14	51
ASE_00238	RNaseP_bact_a links to Rfam database...	0.68	0.62	0.75	71	64166	26	1	23	2	43
ASE_00240	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	36	46581	51	1	47	3	57
ASE_00241	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.85	64	43881	17	2	9	6	23
ASE_00242	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.79	81	60973	24	6	15	3	31
ASE_00246	RNaseP_nuc links to Rfam database...	0.36	0.37	0.34	25	48132	70	12	36	22	42
ASE_00247	RNaseP_nuc links to Rfam database...	0.16	0.19	0.14	12	54201	94	19	53	22	52
ASE_00248	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.67	66	62383	36	1	31	4	48
ASE_00250	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.66	75	78889	45	2	37	6	56
ASE_00252	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.80	117	115293	39	2	28	9	51
ASE_00254	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.81	60	36782	20	5	9	6	22
ASE_00255	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.67	80	74571	46	4	36	6	50
ASE_00257	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	72	50951	21	2	15	4	25
ASE_00259	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.51	50	73054	53	5	44	4	71
ASE_00263	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	67	70383	50	4	46	0	53
ASE_00264	RNaseP_nuc links to Rfam database...	0.43	0.43	0.43	43	49041	67	9	48	10	57
ASE_00267	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.52	41	45071	44	3	35	6	47
ASE_00270	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.75	89	72271	33	3	27	3	39
ASE_00274	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.51	48	55516	49	6	41	2	55
ASE_00277	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	54	48119	35	5	27	3	37
ASE_00279	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	52	53202	48	8	39	1	49
ASE_00280	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	57	51914	35	4	28	3	41
ASE_00281	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.75	57	44475	26	1	18	7	31
ASE_00282	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	60	77698	59	9	48	2	67
ASE_00283	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	67	61674	41	4	31	6	40
ASE_00284	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	68	58209	40	6	28	6	40
ASE_00285	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	96	68896	23	3	11	9	26
ASE_00286	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	64	46582	24	1	18	5	28
ASE_00287	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	67	54853	32	3	23	6	36
ASE_00288	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.69	51	45982	27	3	20	4	42
ASE_00289	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.87	116	100891	24	2	16	6	41
ASE_00291	-	0.51	0.49	0.53	46	48430	43	3	37	3	48
ASE_00292	RNaseP_bact_a links to Rfam database...	0.59	0.53	0.66	73	81699	43	2	36	5	65
ASE_00294	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	116	114333	36	3	29	4	55
ASE_00295	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.70	81	73804	37	3	32	2	50
ASE_00296	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	78	91670	61	5	53	3	67
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.68	66	52878	37	5	26	6	32
ASE_00298	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	31	67422	79	7	68	4	82
ASE_00299	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.52	51	49356	54	3	45	6	49
ASE_00313	RNaseP_nuc links to Rfam database...	0.54	0.56	0.52	50	62384	69	9	38	22	39
ASE_00316	RNaseP_nuc links to Rfam database...	0.66	0.64	0.68	63	107788	83	5	24	54	35
ASE_00318	RNaseP_bact_b links to Rfam database...	0.63	0.60	0.66	71	80093	40	12	24	4	47
ASE_00327	RNaseP_nuc links to Rfam database...	0.81	0.80	0.83	71	57205	34	3	12	19	18
ASE_00328	RNaseP_bact_b links to Rfam database...	0.63	0.59	0.67	66	72673	41	5	27	9	46
ASE_00330	RNaseP_nuc links to Rfam database...	0.78	0.78	0.78	70	56190	41	1	19	21	20
ASE_00332	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	76	81678	60	2	54	4	62
ASE_00335	RNaseP_bact_b links to Rfam database...	0.62	0.57	0.68	66	75369	44	2	29	13	50
ASE_00337	RNaseP_nuc links to Rfam database...	0.52	0.54	0.51	38	39266	51	5	31	15	33
ASE_00338	RNaseP_nuc links to Rfam database...	0.68	0.66	0.71	65	66338	45	4	23	18	33
ASE_00339	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.78	84	80092	36	0	24	12	35
ASE_00340	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	38	45978	44	4	36	4	47
ASE_00342	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.70	74	62376	33	4	27	2	41
ASE_00343	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.75	73	83339	39	1	23	15	40
ASE_00346	RNaseP_arch links to Rfam database...	0.34	0.34	0.35	33	48111	67	4	57	6	64
ASE_00353	RNaseP_bact_a links to Rfam database...	0.77	0.75	0.78	80	57868	29	1	21	7	27
ASE_00359	RNaseP_arch links to Rfam database...	0.49	0.48	0.51	38	42703	44	3	34	7	42
ASE_00360	RNaseP_arch links to Rfam database...	0.31	0.31	0.32	20	29341	43	8	34	1	45
ASE_00361	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.67	77	75351	42	8	30	4	50
ASE_00362	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.60	54	48115	38	2	34	2	37
ASE_00363	RNaseP_bact_a links to Rfam database...	0.78	0.77	0.80	72	51270	25	1	17	7	22
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.77	75	54187	33	3	20	10	30
ASE_00366	RNaseP_bact_a links to Rfam database...	0.37	0.38	0.36	37	58550	68	7	59	2	61
ASE_00367	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.50	43	42985	49	8	35	6	43
ASE_00369	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.78	77	55846	28	1	21	6	30
ASE_00370	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.62	53	41820	35	4	28	3	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	68	51908	33	4	23	6	32
ASE_00374	RNaseP_bact_a links to Rfam database...	0.74	0.73	0.74	64	44764	23	5	17	1	24
ASE_00375	RNaseP_bact_a links to Rfam database...	0.85	0.77	0.93	85	60287	12	1	5	6	25
ASE_00376	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.63	63	56853	41	4	33	4	42
ASE_00377	RNaseP_bact_a links to Rfam database...	0.77	0.76	0.78	81	57526	29	4	19	6	26
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	52	45973	39	4	27	8	37
ASE_00380	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.67	56	54862	34	7	21	6	43
ASE_00382	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.59	47	41826	36	6	26	4	37
ASE_00383	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.75	76	54514	32	3	22	7	29
ASE_00384	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	70	48428	22	2	16	4	22
ASE_00385	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.59	47	41826	33	5	27	1	34
ASE_00386	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	63	50310	36	1	29	6	33
ASE_00387	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	68	55852	27	1	24	2	36
ASE_00388	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	60	45676	22	1	16	5	29
ASE_00390	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.67	54	42114	37	3	24	10	31
ASE_00393	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.77	63	47813	26	2	17	7	30
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.80	0.81	74	46880	20	4	13	3	19
ASE_00395	RNaseP_bact_a links to Rfam database...	0.68	0.68	0.69	57	41533	29	5	21	3	27
ASE_00396	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	45	41538	34	2	31	1	38
ASE_00397	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.65	67	54512	41	6	30	5	38
ASE_00398	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.74	65	55857	30	1	22	7	39
ASE_00400	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	67	57874	31	1	28	2	39
ASE_00401	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.64	79	76904	46	7	38	1	47
ASE_00402	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	63	42410	18	1	12	5	22
ASE_00403	RNaseP_bact_a links to Rfam database...	0.39	0.36	0.41	39	55850	61	3	53	5	68
ASE_00404	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	45	42989	38	2	35	1	40
ASE_00406	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.74	67	48737	29	6	18	5	27
ASE_00408	-	0.77	0.76	0.77	54	32315	19	2	14	3	17
ASE_00409	-	0.69	0.63	0.75	52	40972	18	0	17	1	31
ASE_00411	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	47	49376	34	7	25	2	42
ASE_00412	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	62	58218	40	4	27	9	43
ASE_00413	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.50	39	44473	43	10	29	4	42
ASE_00414	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	43	46272	52	1	44	7	52
ASE_00415	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	54	54849	50	3	40	7	49
ASE_00416	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.63	74	77304	51	5	38	8	53
ASE_00417	RNaseP_arch links to Rfam database...	0.47	0.47	0.47	47	54516	55	2	50	3	53
ASE_00418	RNaseP_arch links to Rfam database...	0.06	0.07	0.07	5	38706	72	5	65	2	70
ASE_00419	RNaseP_bact_a links to Rfam database...	0.77	0.77	0.78	79	54845	24	9	13	2	24
ASE_00422	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.68	63	46879	34	5	24	5	31
ASE_00423	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	72	56847	36	7	27	2	37
ASE_00426	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.63	57	60984	35	7	27	1	51
ASE_00428	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.73	78	76529	38	2	27	9	47
ASE_00429	-	0.44	0.41	0.48	27	28147	36	4	25	7	39
ASE_00430	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	66	46877	35	5	23	7	31
ASE_00431	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.58	48	46277	49	0	35	14	47
ASE_00434	RNaseP_bact_b links to Rfam database...	0.67	0.63	0.71	69	68168	42	3	25	14	41
ASE_00437	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	55	79296	53	1	49	3	80
ASE_00438	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.71	71	65966	32	2	27	3	45
ASE_00441	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	85	64166	20	2	8	10	27
ASE_00447	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.79	79	60278	27	0	21	6	37
ASE_00448	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	42	64162	65	8	49	8	70
ASE_00451	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	86	70767	24	2	21	1	39
CRW_00004	-	0.58	0.60	0.56	79	154149	98	8	54	36	52
CRW_00005	-	0.62	0.64	0.61	84	137937	85	8	46	31	48
CRW_00007	-	0.45	0.49	0.42	65	144835	100	28	63	9	68
CRW_00009	-	0.47	0.49	0.47	67	137931	96	5	72	19	71
CRW_00010	-	0.83	0.83	0.83	105	102704	38	3	19	16	21
CRW_00011	-	0.83	0.85	0.81	117	118196	48	5	23	20	21
CRW_00012	-	0.55	0.55	0.56	78	147013	74	11	51	12	63
CRW_00013	Intron_gpI links to Rfam database...	0.43	0.39	0.47	45	103644	80	11	40	29	70
CRW_00014	-	0.38	0.37	0.39	46	103621	85	10	63	12	77
CRW_00016	Intron_gpI links to Rfam database...	0.73	0.68	0.79	81	77319	37	0	21	16	39
CRW_00017	-	0.66	0.68	0.64	62	92138	53	13	22	18	29
CRW_00018	-	0.58	0.56	0.59	68	182595	102	8	39	55	53
CRW_00019	-	0.78	0.77	0.79	105	127632	56	1	27	28	32
CRW_00423	-	0.22	0.20	0.25	38	242405	124	16	97	11	151
CRW_00429	-	0.31	0.27	0.36	63	306763	117	19	91	7	170
CRW_00605	-	0.73	0.70	0.77	49	183857	120	3	12	105	21
CRW_00608	-	0.84	0.78	0.90	62	35709	17	0	7	10	17
CRW_00610	Intron_gpI links to Rfam database...	0.50	0.49	0.51	40	36237	41	9	29	3	41
CRW_00611	-	0.89	0.81	0.97	61	31312	9	0	2	7	14
CRW_00612	-	0.53	0.51	0.55	47	270395	177	1	37	139	46
CRW_00613	Intron_gpI links to Rfam database...	0.79	0.77	0.81	60	34906	22	1	13	8	18
CRW_00614	Intron_gpI links to Rfam database...	0.24	0.25	0.23	14	121709	121	7	41	73	43
CRW_00618	Intron_gpI links to Rfam database...	0.20	0.21	0.19	13	56213	75	8	46	21	48
CRW_00619	Intron_gpI links to Rfam database...	0.45	0.40	0.52	29	164969	110	5	22	83	44
CRW_00620	Intron_gpI links to Rfam database...	0.18	0.22	0.15	14	150884	136	23	54	59	49
CRW_00621	Intron_gpI links to Rfam database...	0.37	0.35	0.38	25	153116	137	6	34	97	46
CRW_00623	Intron_gpI links to Rfam database...	0.25	0.20	0.31	17	129740	100	5	33	62	66
CRW_00626	-	0.79	0.79	0.80	82	100922	54	2	19	33	22
CRW_00629	-	0.58	0.58	0.59	71	91257	53	13	37	3	51
CRW_00632	-	0.72	0.71	0.73	91	82904	39	3	30	6	37
CRW_00633	Intron_gpI links to Rfam database...	0.58	0.55	0.62	58	63453	37	8	27	2	48
CRW_00634	Intron_gpI links to Rfam database...	0.58	0.59	0.57	55	64524	43	12	29	2	39
CRW_00635	-	0.49	0.47	0.51	64	109152	73	11	51	11	73
CRW_00636	-	0.56	0.58	0.55	83	114809	75	11	57	7	60
CRW_00637	-	0.42	0.41	0.42	65	133750	95	8	80	7	93
CRW_00639	-	0.41	0.42	0.39	58	126609	92	22	67	3	80
CRW_00641	-	0.85	0.87	0.84	66	39824	21	4	9	8	10
CRW_00642	-	0.53	0.58	0.48	38	47198	54	12	30	12	27
CRW_00643	-	0.39	0.43	0.36	53	123108	99	27	68	4	69
CRW_00645	-	0.59	0.61	0.58	41	35440	40	5	25	10	26
CRW_00646	-	0.52	0.53	0.51	34	34913	41	7	26	8	30
CRW_00648	-	0.70	0.68	0.72	101	137935	54	8	31	15	47
CRW_00649	-	0.72	0.74	0.70	92	204348	116	7	33	76	32
CRW_00650	-	0.49	0.49	0.48	70	112904	82	8	68	6	72
CRW_00651	-	0.49	0.51	0.47	62	99995	78	14	57	7	59
CRW_00652	-	0.60	0.65	0.56	84	132204	84	14	53	17	46
CRW_00653	-	0.92	0.90	0.93	121	94700	14	1	8	5	13
CRW_00654	-	0.85	0.81	0.89	101	78096	19	4	9	6	23
CRW_00655	-	0.83	0.79	0.88	98	89141	20	2	12	6	26
CRW_00656	-	0.66	0.64	0.68	82	90404	47	12	27	8	47
CRW_00657	-	0.78	0.77	0.78	105	105896	42	6	23	13	31
CRW_00658	-	0.44	0.46	0.42	47	74579	74	18	47	9	55
CRW_00659	-	0.43	0.48	0.40	29	32312	52	12	32	8	32
CRW_00660	-	0.46	0.47	0.46	28	22094	36	3	30	3	32
CRW_00661	-	0.09	0.10	0.08	5	24250	57	22	33	2	46
CRW_00662	-	0.40	0.40	0.39	26	28614	47	7	33	7	39
CRW_00663	-	0.10	0.10	0.10	6	26044	58	2	54	2	55
CRW_00664	-	0.23	0.24	0.22	19	53543	74	13	53	8	59
CRW_00665	-	0.18	0.19	0.18	9	23602	42	12	30	0	39
CRW_00666	-	0.59	0.59	0.59	74	96016	57	7	44	6	52
CRW_00668	-	0.70	0.72	0.68	108	163719	72	12	39	21	42
CRW_00669	-	0.66	0.61	0.72	73	97359	45	3	26	16	46
CRW_00670	Intron_gpI links to Rfam database...	0.76	0.71	0.83	85	70022	19	0	18	1	35
CRW_00671	Intron_gpI links to Rfam database...	0.73	0.70	0.77	82	62728	31	1	24	6	35
CRW_00672	Intron_gpI links to Rfam database...	0.53	0.52	0.55	58	72284	55	8	40	7	53
CRW_00673	-	0.77	0.77	0.77	81	100023	44	15	9	20	24
CRW_00674	Intron_gpI links to Rfam database...	0.70	0.66	0.74	82	83325	34	5	24	5	42
CRW_00676	Intron_gpI links to Rfam database...	0.42	0.44	0.40	51	93400	81	20	57	4	64
CRW_00677	-	0.61	0.61	0.62	64	71906	47	8	32	7	41
CRW_00679	-	0.42	0.43	0.41	46	76524	72	15	51	6	61
CRW_00681	-	0.54	0.57	0.52	64	112927	79	18	41	20	48
CRW_00685	-	0.29	0.34	0.25	36	156936	130	34	74	22	70
CRW_00686	-	0.65	0.64	0.66	80	95145	52	5	36	11	45
CRW_00687	-	0.60	0.64	0.57	42	28606	33	7	25	1	24
CRW_00688	-	0.85	0.82	0.89	47	21892	10	2	4	4	10
CRW_00689	-	0.67	0.69	0.65	53	33588	34	7	22	5	24
CRW_00690	-	0.76	0.72	0.81	50	33349	21	2	10	9	19
CRW_00691	-	0.63	0.63	0.63	42	27194	30	2	23	5	25
CRW_00692	Intron_gpI links to Rfam database...	0.45	0.44	0.47	40	68549	53	16	30	7	50
CRW_00693	-	0.69	0.69	0.69	84	89131	58	3	35	20	38
CRW_00694	-	0.66	0.66	0.67	80	85785	46	4	36	6	42
CRW_00699	-	0.75	0.74	0.76	93	91684	35	2	27	6	33
CRW_00700	-	0.76	0.73	0.78	108	180762	61	1	30	30	39
CRW_00703	-	0.58	0.61	0.56	40	40399	37	7	24	6	26
CRW_00714	-	0.81	0.78	0.86	83	186258	68	3	11	54	24
CRW_00715	-	0.92	0.87	0.98	90	69286	5	0	2	3	14
CRW_00716	-	0.87	0.84	0.89	75	193669	86	2	7	77	14
CRW_00717	-	0.46	0.44	0.49	65	153603	79	14	53	12	83
CRW_00718	-	0.81	0.75	0.88	143	189874	42	2	17	23	48
CRW_00719	-	0.67	0.64	0.71	58	230099	116	7	17	92	33
CRW_00720	-	0.54	0.52	0.56	47	208251	105	7	30	68	44
CRW_00721	-	0.63	0.65	0.61	44	58581	52	8	20	24	24
CRW_00764	-	0.12	0.10	0.14	20	252968	135	29	99	7	176
CRW_00775	-	0.18	0.16	0.22	33	314670	125	25	93	7	179
CRW_00815	-	0.66	0.68	0.63	108	159724	70	17	46	7	50
CRW_00816	-	0.41	0.42	0.39	54	143779	97	10	73	14	75
CRW_00820	-	0.65	0.61	0.68	89	136372	51	4	38	9	56
PDB_00072	-	0.49	0.50	0.49	105	148025	110	9	101	0	105
PDB_00078	-	0.55	0.54	0.55	62	49658	50	6	44	0	53
PDB_00079	-	0.70	0.67	0.73	95	121640	68	9	27	32	47
PDB_00278	-	0.20	0.19	0.21	14	24909	53	4	49	0	58
PDB_00403	-	0.62	0.60	0.63	92	124604	69	16	38	15	61
PDB_00423	-	0.15	0.15	0.16	11	26727	58	6	52	0	63
PDB_00701	-	0.16	0.16	0.16	17	45344	90	7	83	0	92
PDB_00747	-	0.82	0.75	0.90	60	24464	8	1	6	1	20
PDB_00827	Intron_gpI links to Rfam database...	0.77	0.65	0.90	53	26969	8	0	6	2	28
PDB_00917	-	0.51	0.49	0.53	47	35156	48	2	40	6	48
PDB_00919	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.59	54	44162	41	5	32	4	49
PDB_01129	-	0.30	0.28	0.32	20	35448	48	9	34	5	51
PDB_01157	-	0.48	0.46	0.51	45	49997	45	8	36	1	53
PDB_01166	-	0.55	0.53	0.57	112	181910	90	17	67	6	100
RFA_00597	Telomerase-vert links to Rfam database...	0.60	0.61	0.59	67	97789	69	16	31	22	42
RFA_00598	Telomerase-vert links to Rfam database...	0.47	0.47	0.48	47	84569	79	6	44	29	54
RFA_00599	Telomerase-vert links to Rfam database...	0.71	0.73	0.70	81	101359	59	10	25	24	30
RFA_00600	Telomerase-vert links to Rfam database...	0.67	0.72	0.62	72	120178	86	21	24	41	28
RFA_00601	Telomerase-vert links to Rfam database...	0.33	0.36	0.30	41	99097	108	37	60	11	73
RFA_00602	Telomerase-vert links to Rfam database...	0.63	0.67	0.58	78	101341	68	25	31	12	38
TMR_00007	tmRNA links to Rfam database...	0.80	0.75	0.84	81	61680	22	3	12	7	27
TMR_00008	tmRNA links to Rfam database...	0.60	0.58	0.63	62	65967	48	11	26	11	44
TMR_00010	tmRNA links to Rfam database...	0.36	0.34	0.37	33	57881	62	6	50	6	63
TMR_00012	tmRNA links to Rfam database...	0.40	0.42	0.39	34	64533	74	17	36	21	47
TMR_00014	tmRNA links to Rfam database...	0.72	0.70	0.74	77	68531	37	11	16	10	33
TMR_00017	tmRNA links to Rfam database...	0.49	0.44	0.54	45	67078	42	5	33	4	57
TMR_00018	tmRNA links to Rfam database...	0.38	0.37	0.40	34	64535	55	13	38	4	58
TMR_00028	tmRNA links to Rfam database...	0.69	0.68	0.70	66	62741	35	5	23	7	31
TMR_00030	tmRNA links to Rfam database...	0.37	0.35	0.39	39	75754	67	10	52	5	72
TMR_00034	tmRNA links to Rfam database...	0.62	0.62	0.62	68	59922	48	10	31	7	42
TMR_00035	tmRNA links to Rfam database...	0.52	0.55	0.49	54	67786	63	13	43	7	44
TMR_00036	tmRNA links to Rfam database...	0.69	0.61	0.77	62	90444	51	5	14	32	39
TMR_00038	tmRNA links to Rfam database...	0.26	0.25	0.26	28	71146	85	15	64	6	82
TMR_00042	tmRNA links to Rfam database...	0.29	0.30	0.29	29	62736	74	13	57	4	69
TMR_00046	tmRNA links to Rfam database...	0.60	0.58	0.62	56	62745	44	6	28	10	40
TMR_00047	tmRNA links to Rfam database...	0.23	0.25	0.22	14	48452	68	13	37	18	43
TMR_00048	tmRNA links to Rfam database...	0.40	0.41	0.40	39	64882	69	13	46	10	56
TMR_00049	tmRNA links to Rfam database...	0.58	0.56	0.59	49	63107	50	5	29	16	38
TMR_00051	tmRNA links to Rfam database...	0.66	0.63	0.69	59	65618	44	2	24	18	35
TMR_00055	tmRNA links to Rfam database...	0.43	0.40	0.46	46	78902	56	15	40	1	68
TMR_00057	tmRNA links to Rfam database...	0.24	0.28	0.21	22	73815	93	19	64	10	57
TMR_00061	tmRNA links to Rfam database...	0.36	0.34	0.37	34	59593	68	8	50	10	65
TMR_00062	tmRNA links to Rfam database...	0.59	0.61	0.57	63	78496	63	7	40	16	41
TMR_00064	tmRNA links to Rfam database...	0.39	0.38	0.41	39	76932	57	17	40	0	64
TMR_00065	tmRNA links to Rfam database...	0.49	0.49	0.50	52	76531	57	16	37	4	54
TMR_00067	tmRNA links to Rfam database...	0.45	0.45	0.46	51	82104	66	7	53	6	63
TMR_00073	tmRNA links to Rfam database...	0.66	0.62	0.71	72	65602	30	5	24	1	45
TMR_00076	tmRNA links to Rfam database...	0.47	0.48	0.46	48	70771	68	19	38	11	52
TMR_00080	tmRNA links to Rfam database...	0.43	0.42	0.44	40	70410	50	15	35	0	56
TMR_00081	tmRNA links to Rfam database...	0.50	0.43	0.58	46	67082	33	8	25	0	60
TMR_00082	tmRNA links to Rfam database...	0.29	0.28	0.30	27	67807	64	9	53	2	69
TMR_00083	tmRNA links to Rfam database...	0.68	0.67	0.69	70	68163	42	4	28	10	35
TMR_00092	tmRNA links to Rfam database...	0.62	0.65	0.59	66	67417	54	11	34	9	35
TMR_00093	tmRNA links to Rfam database...	0.41	0.39	0.43	40	64167	63	14	40	9	62
TMR_00096	tmRNA links to Rfam database...	0.30	0.28	0.33	28	64894	67	13	45	9	72
TMR_00101	tmRNA links to Rfam database...	0.62	0.61	0.64	65	64160	50	8	28	14	42
TMR_00102	tmRNA links to Rfam database...	0.34	0.34	0.35	34	64163	68	12	52	4	67
TMR_00103	tmRNA links to Rfam database...	0.55	0.58	0.53	63	64142	60	16	40	4	45
TMR_00104	-	0.09	0.10	0.09	7	66714	79	25	49	5	63
TMR_00106	tmRNA links to Rfam database...	0.56	0.51	0.62	61	90001	42	12	26	4	59
TMR_00109	tmRNA links to Rfam database...	0.41	0.42	0.40	51	88283	78	21	55	2	71
TMR_00111	tmRNA links to Rfam database...	0.54	0.52	0.56	63	90413	54	12	37	5	59
TMR_00116	tmRNA links to Rfam database...	0.74	0.67	0.81	70	64894	34	1	15	18	34
TMR_00117	tmRNA links to Rfam database...	0.73	0.70	0.75	83	80090	36	9	18	9	35
TMR_00118	tmRNA links to Rfam database...	0.53	0.52	0.55	62	81293	60	7	44	9	58
TMR_00119	tmRNA links to Rfam database...	0.65	0.63	0.67	66	71912	41	4	28	9	38
TMR_00123	tmRNA links to Rfam database...	0.53	0.51	0.55	52	66335	52	4	39	9	49
TMR_00124	tmRNA links to Rfam database...	0.59	0.59	0.60	58	70403	51	13	26	12	40
TMR_00125	tmRNA links to Rfam database...	0.28	0.26	0.31	26	64176	63	13	46	4	73
TMR_00127	tmRNA links to Rfam database...	0.61	0.62	0.61	60	62737	52	3	35	14	37
TMR_00128	tmRNA links to Rfam database...	0.34	0.34	0.33	33	60976	66	20	46	0	63
TMR_00131	tmRNA links to Rfam database...	0.56	0.53	0.60	52	64893	43	5	30	8	47
TMR_00135	tmRNA links to Rfam database...	0.65	0.65	0.65	64	62736	50	6	29	15	35
TMR_00136	tmRNA links to Rfam database...	0.20	0.22	0.19	22	74577	95	21	71	3	79
TMR_00137	tmRNA links to Rfam database...	0.37	0.34	0.41	30	61001	53	6	38	9	59
TMR_00139	tmRNA links to Rfam database...	0.63	0.67	0.59	61	62025	53	19	23	11	30
TMR_00140	tmRNA links to Rfam database...	0.55	0.55	0.56	55	73822	64	3	40	21	45
TMR_00142	tmRNA links to Rfam database...	0.57	0.58	0.56	59	70771	61	13	33	15	43
TMR_00143	tmRNA links to Rfam database...	0.45	0.46	0.45	47	64516	68	10	47	11	56
TMR_00144	tmRNA links to Rfam database...	0.40	0.37	0.43	38	74217	55	8	42	5	65
TMR_00146	tmRNA links to Rfam database...	0.85	0.90	0.79	38	32083	35	7	3	25	4
TMR_00150	tmRNA links to Rfam database...	0.72	0.71	0.73	30	43030	50	2	9	39	12
TMR_00152	tmRNA links to Rfam database...	0.33	0.31	0.36	36	81306	73	12	52	9	79
TMR_00155	tmRNA links to Rfam database...	0.62	0.60	0.64	62	61679	47	8	27	12	42
TMR_00156	tmRNA links to Rfam database...	0.61	0.59	0.64	57	60289	36	6	26	4	40
TMR_00158	tmRNA links to Rfam database...	0.51	0.51	0.51	50	60628	54	7	41	6	49
TMR_00159	tmRNA links to Rfam database...	0.62	0.60	0.65	55	62043	46	7	23	16	37
TMR_00160	tmRNA links to Rfam database...	0.50	0.49	0.51	47	64527	57	13	33	11	48
TMR_00164	tmRNA links to Rfam database...	0.42	0.40	0.45	42	66702	59	9	42	8	64
TMR_00165	tmRNA links to Rfam database...	0.48	0.46	0.49	45	61685	53	9	37	7	52
TMR_00166	tmRNA links to Rfam database...	0.39	0.38	0.41	38	61683	65	5	50	10	63
TMR_00168	tmRNA links to Rfam database...	0.72	0.68	0.76	78	60972	32	0	25	7	36
TMR_00173	tmRNA links to Rfam database...	0.32	0.36	0.29	15	42143	71	13	24	34	27
TMR_00179	tmRNA links to Rfam database...	0.44	0.46	0.43	45	67056	67	10	50	7	53
TMR_00180	tmRNA links to Rfam database...	0.72	0.72	0.72	71	67063	42	5	22	15	28
TMR_00182	tmRNA links to Rfam database...	0.22	0.22	0.22	22	66330	84	10	68	6	80
TMR_00183	tmRNA links to Rfam database...	0.25	0.24	0.25	25	63091	80	10	64	6	78
TMR_00184	tmRNA links to Rfam database...	0.41	0.41	0.41	42	63087	73	4	57	12	60
TMR_00193	tmRNA links to Rfam database...	0.56	0.55	0.56	44	59262	47	6	28	13	36
TMR_00194	tmRNA links to Rfam database...	0.51	0.46	0.56	43	62758	42	2	32	8	50
TMR_00196	tmRNA links to Rfam database...	0.45	0.42	0.48	41	60989	55	11	34	10	56
TMR_00199	tmRNA links to Rfam database...	0.57	0.59	0.56	54	62738	51	18	25	8	38
TMR_00200	-	0.41	0.40	0.42	30	41544	52	7	35	10	45
TMR_00204	tmRNA links to Rfam database...	0.56	0.53	0.61	51	60294	43	10	23	10	46
TMR_00207	tmRNA links to Rfam database...	0.43	0.40	0.48	41	72304	50	5	40	5	62
TMR_00223	tmRNA links to Rfam database...	0.40	0.38	0.43	36	64177	53	10	38	5	59
TMR_00224	tmRNA links to Rfam database...	0.49	0.45	0.55	45	64898	42	7	30	5	56
TMR_00226	tmRNA links to Rfam database...	0.36	0.36	0.36	38	69644	77	17	52	8	67
TMR_00227	tmRNA links to Rfam database...	0.38	0.39	0.37	39	70019	72	12	55	5	62
TMR_00228	tmRNA links to Rfam database...	0.32	0.34	0.30	37	88287	91	21	65	5	71
TMR_00234	tmRNA links to Rfam database...	0.36	0.32	0.40	33	58913	56	6	44	6	69
TMR_00238	tmRNA links to Rfam database...	0.31	0.33	0.29	33	84552	87	24	57	6	68
TMR_00239	tmRNA links to Rfam database...	0.50	0.51	0.50	49	61678	56	9	40	7	47
TMR_00240	tmRNA links to Rfam database...	0.60	0.61	0.60	52	63103	43	14	21	8	33
TMR_00246	-	0.26	0.29	0.22	10	78165	112	4	31	77	24
TMR_00248	tmRNA links to Rfam database...	0.42	0.39	0.45	15	54252	64	3	15	46	23
TMR_00257	tmRNA links to Rfam database...	0.25	0.22	0.27	22	67080	65	2	57	6	76
TMR_00259	tmRNA links to Rfam database...	0.38	0.35	0.41	36	67809	51	10	41	0	67
TMR_00261	tmRNA links to Rfam database...	0.58	0.60	0.55	61	66685	58	17	32	9	40
TMR_00262	tmRNA links to Rfam database...	0.46	0.46	0.46	48	74200	61	16	41	4	56
TMR_00271	tmRNA links to Rfam database...	0.64	0.62	0.67	56	64177	40	6	22	12	35
TMR_00274	tmRNA links to Rfam database...	0.60	0.59	0.60	62	66692	47	13	28	6	43
TMR_00278	tmRNA links to Rfam database...	0.42	0.43	0.42	44	67790	71	5	57	9	58
TMR_00279	tmRNA links to Rfam database...	0.53	0.54	0.52	51	68908	60	8	39	13	43
TMR_00280	tmRNA links to Rfam database...	0.60	0.62	0.58	63	65958	64	4	41	19	38
TMR_00283	tmRNA links to Rfam database...	0.65	0.63	0.67	60	65252	41	5	24	12	36
TMR_00289	tmRNA links to Rfam database...	0.53	0.52	0.54	51	67066	54	5	39	10	47
TMR_00290	tmRNA links to Rfam database...	0.61	0.59	0.64	54	64177	43	4	26	13	38
TMR_00296	tmRNA links to Rfam database...	0.49	0.50	0.48	49	68903	59	12	42	5	49
TMR_00298	tmRNA links to Rfam database...	0.54	0.51	0.56	52	68172	50	11	30	9	49
TMR_00300	tmRNA links to Rfam database...	0.63	0.63	0.63	71	70388	54	11	30	13	41
TMR_00301	tmRNA links to Rfam database...	0.58	0.51	0.66	49	82141	40	5	20	15	47
TMR_00302	tmRNA links to Rfam database...	0.33	0.35	0.31	33	77314	82	24	50	8	61
TMR_00305	tmRNA links to Rfam database...	0.59	0.57	0.62	58	60982	49	8	27	14	44
TMR_00306	tmRNA links to Rfam database...	0.67	0.68	0.67	72	64153	49	5	31	13	34
TMR_00310	tmRNA links to Rfam database...	0.56	0.55	0.58	54	63810	50	9	30	11	44
TMR_00317	tmRNA links to Rfam database...	0.68	0.68	0.68	69	68164	38	6	26	6	33
TMR_00331	tmRNA links to Rfam database...	0.37	0.40	0.34	33	66697	80	10	55	15	49
TMR_00332	tmRNA links to Rfam database...	0.45	0.40	0.50	40	67081	45	2	38	5	59
TMR_00334	tmRNA links to Rfam database...	0.38	0.37	0.40	37	66703	62	9	46	7	64
TMR_00337	tmRNA links to Rfam database...	0.48	0.45	0.50	54	82921	57	11	42	4	65
TMR_00340	tmRNA links to Rfam database...	0.51	0.52	0.51	42	64179	66	8	32	26	39
TMR_00341	tmRNA links to Rfam database...	0.27	0.28	0.26	26	63091	81	16	57	8	66
TMR_00343	tmRNA links to Rfam database...	0.37	0.35	0.39	37	64884	68	6	53	9	68
TMR_00345	tmRNA links to Rfam database...	0.70	0.68	0.72	71	63805	37	7	20	10	33
TMR_00346	tmRNA links to Rfam database...	0.53	0.53	0.54	50	64168	47	13	30	4	44
TMR_00348	tmRNA links to Rfam database...	0.32	0.29	0.35	29	77337	72	13	42	17	70
TMR_00352	tmRNA links to Rfam database...	0.14	0.16	0.12	12	95167	98	32	55	11	63
TMR_00353	tmRNA links to Rfam database...	0.52	0.55	0.50	58	84139	70	21	37	12	47
TMR_00357	tmRNA links to Rfam database...	0.37	0.35	0.39	32	82946	70	10	40	20	60
TMR_00358	tmRNA links to Rfam database...	0.68	0.69	0.67	68	74976	55	15	19	21	31
TMR_00361	-	0.35	0.40	0.30	29	93432	80	24	43	13	43
TMR_00366	tmRNA links to Rfam database...	0.52	0.50	0.53	50	67802	55	12	32	11	50
TMR_00372	tmRNA links to Rfam database...	0.59	0.59	0.59	57	70404	52	7	32	13	39
TMR_00374	tmRNA links to Rfam database...	0.35	0.36	0.35	33	81715	80	11	51	18	59
TMR_00375	tmRNA links to Rfam database...	0.51	0.53	0.49	52	73429	63	14	41	8	46
TMR_00376	tmRNA links to Rfam database...	0.51	0.49	0.52	47	74601	60	9	34	17	48
TMR_00378	tmRNA links to Rfam database...	0.24	0.25	0.24	24	67797	86	17	58	11	73
TMR_00383	tmRNA links to Rfam database...	0.44	0.40	0.49	40	66714	50	11	30	9	60
TMR_00384	tmRNA links to Rfam database...	0.20	0.19	0.22	20	65614	74	4	65	5	88
TMR_00393	tmRNA links to Rfam database...	0.58	0.62	0.54	33	53240	62	9	19	34	20
TMR_00395	tmRNA links to Rfam database...	0.75	0.72	0.78	78	64520	30	5	17	8	31
TMR_00398	tmRNA links to Rfam database...	0.72	0.70	0.75	74	65242	34	8	17	9	32
TMR_00399	tmRNA links to Rfam database...	0.44	0.43	0.47	40	64894	52	16	30	6	54
TMR_00404	tmRNA links to Rfam database...	0.56	0.58	0.55	53	67431	62	11	33	18	39
TMR_00408	tmRNA links to Rfam database...	0.58	0.61	0.55	54	65968	57	14	30	13	34
TMR_00409	tmRNA links to Rfam database...	0.64	0.76	0.55	35	68571	80	10	19	51	11
TMR_00411	tmRNA links to Rfam database...	0.61	0.60	0.62	52	60991	44	9	23	12	35
TMR_00415	tmRNA links to Rfam database...	0.64	0.62	0.66	63	67066	36	3	29	4	38
TMR_00419	tmRNA links to Rfam database...	0.63	0.61	0.65	68	81706	55	12	24	19	43
TMR_00422	tmRNA links to Rfam database...	0.53	0.58	0.48	53	67786	75	17	40	18	39
TMR_00423	tmRNA links to Rfam database...	0.52	0.56	0.48	41	63817	64	16	29	19	32
TMR_00427	tmRNA links to Rfam database...	0.45	0.42	0.48	41	67443	49	10	34	5	56
TMR_00429	tmRNA links to Rfam database...	0.38	0.38	0.38	41	74583	72	15	52	5	68
TMR_00430	tmRNA links to Rfam database...	0.18	0.18	0.17	20	82505	96	25	71	0	89
TMR_00431	tmRNA links to Rfam database...	0.70	0.69	0.72	38	51950	55	6	9	40	17
TMR_00432	tmRNA links to Rfam database...	0.46	0.45	0.46	47	79698	63	11	44	8	57
TMR_00433	tmRNA links to Rfam database...	0.59	0.59	0.58	63	80092	51	11	34	6	43
TMR_00439	tmRNA links to Rfam database...	0.45	0.47	0.43	47	68525	75	15	48	12	54
TMR_00441	tmRNA links to Rfam database...	0.14	0.16	0.13	13	62031	95	20	64	11	70
TMR_00443	tmRNA links to Rfam database...	0.57	0.51	0.65	53	67079	36	6	23	7	51
TMR_00448	tmRNA links to Rfam database...	0.47	0.45	0.49	41	62045	50	7	35	8	51
TMR_00451	tmRNA links to Rfam database...	0.19	0.19	0.18	17	63453	80	18	58	4	72
TMR_00457	tmRNA links to Rfam database...	0.22	0.24	0.21	24	78491	96	11	80	5	78
TMR_00458	tmRNA links to Rfam database...	0.32	0.30	0.35	28	63465	60	11	42	7	65
TMR_00460	tmRNA links to Rfam database...	0.65	0.64	0.67	68	79299	42	6	28	8	38
TMR_00465	tmRNA links to Rfam database...	0.27	0.28	0.26	26	64160	79	23	52	4	68
TMR_00469	tmRNA links to Rfam database...	0.53	0.53	0.53	53	64520	51	13	34	4	47
TMR_00472	tmRNA links to Rfam database...	0.64	0.64	0.64	62	64523	43	12	23	8	35
TMR_00478	tmRNA links to Rfam database...	0.24	0.26	0.22	26	71894	94	21	69	4	73
TMR_00498	tmRNA links to Rfam database...	0.46	0.45	0.46	45	68909	60	20	32	8	54
TMR_00499	tmRNA links to Rfam database...	0.27	0.28	0.25	28	64510	88	10	72	6	71
TMR_00501	tmRNA links to Rfam database...	0.45	0.46	0.45	42	62387	61	9	43	9	50
TMR_00502	tmRNA links to Rfam database...	0.37	0.39	0.35	36	75364	77	19	47	11	57
TMR_00503	tmRNA links to Rfam database...	0.70	0.68	0.73	75	67793	38	6	22	10	36
TMR_00519	tmRNA links to Rfam database...	0.33	0.32	0.35	30	63105	69	8	47	14	65
TMR_00520	tmRNA links to Rfam database...	0.44	0.41	0.48	41	63104	56	9	36	11	58
TMR_00522	tmRNA links to Rfam database...	0.36	0.35	0.38	34	63100	65	12	44	9	63
TMR_00528	tmRNA links to Rfam database...	0.36	0.36	0.35	35	63091	75	20	44	11	62
TMR_00540	tmRNA links to Rfam database...	0.35	0.35	0.36	36	73436	76	10	54	12	68
TMR_00541	tmRNA links to Rfam database...	0.56	0.55	0.57	58	61674	54	6	38	10	47
TMR_00544	tmRNA links to Rfam database...	0.36	0.36	0.36	39	89567	82	13	57	12	69
TMR_00547	tmRNA links to Rfam database...	0.68	0.66	0.70	66	65247	33	0	28	5	34
TMR_00553	tmRNA links to Rfam database...	0.45	0.44	0.45	36	48125	50	9	35	6	45
TMR_00559	tmRNA links to Rfam database...	0.52	0.50	0.53	51	62385	53	7	38	8	50
TMR_00560	tmRNA links to Rfam database...	0.61	0.54	0.68	53	60997	30	2	23	5	45
TMR_00562	tmRNA links to Rfam database...	0.16	0.18	0.15	18	72652	102	19	82	1	84
TMR_00563	tmRNA links to Rfam database...	0.62	0.65	0.59	67	75352	55	19	28	8	36
TMR_00566	tmRNA links to Rfam database...	0.58	0.54	0.62	54	60639	38	6	27	5	46
TMR_00568	tmRNA links to Rfam database...	0.51	0.51	0.53	50	60631	51	6	39	6	49
TMR_00570	tmRNA links to Rfam database...	0.69	0.64	0.75	62	60295	30	2	19	9	35
TMR_00571	tmRNA links to Rfam database...	0.65	0.64	0.66	63	60631	44	7	25	12	36
TMR_00576	tmRNA links to Rfam database...	0.65	0.65	0.65	66	60277	44	8	27	9	36
TMR_00579	tmRNA links to Rfam database...	0.21	0.23	0.19	21	80490	99	23	67	9	69
TMR_00580	tmRNA links to Rfam database...	0.41	0.41	0.41	41	60625	63	15	45	3	59
TMR_00581	tmRNA links to Rfam database...	0.45	0.42	0.48	41	62396	49	9	35	5	57
TMR_00584	tmRNA links to Rfam database...	0.63	0.61	0.65	59	60984	45	3	29	13	38
TMR_00586	tmRNA links to Rfam database...	0.41	0.41	0.41	40	60977	63	11	47	5	57
TMR_00587	tmRNA links to Rfam database...	0.58	0.57	0.59	57	61329	48	6	33	9	43
TMR_00588	tmRNA links to Rfam database...	0.39	0.40	0.38	40	77315	71	23	43	5	61
TMR_00594	tmRNA links to Rfam database...	0.36	0.36	0.37	37	79300	70	12	52	6	67
TMR_00596	tmRNA links to Rfam database...	0.34	0.34	0.34	32	78115	78	16	47	15	63
TMR_00599	tmRNA links to Rfam database...	0.25	0.28	0.23	20	63102	75	25	43	7	52
TMR_00600	tmRNA links to Rfam database...	0.50	0.50	0.51	57	79688	61	10	45	6	58
TMR_00601	tmRNA links to Rfam database...	0.32	0.31	0.34	13	58958	72	5	20	47	29
TMR_00603	tmRNA links to Rfam database...	0.67	0.70	0.64	30	60331	69	6	11	52	13
TMR_00604	tmRNA links to Rfam database...	0.65	0.64	0.67	72	62727	41	3	33	5	40
TMR_00605	tmRNA links to Rfam database...	0.52	0.53	0.52	57	74195	60	16	37	7	51
TMR_00606	tmRNA links to Rfam database...	0.39	0.40	0.37	43	68891	79	8	64	7	64
TMR_00609	tmRNA links to Rfam database...	0.69	0.68	0.70	77	63436	41	8	25	8	36
TMR_00610	tmRNA links to Rfam database...	0.70	0.70	0.70	73	62023	47	9	23	15	31
TMR_00611	tmRNA links to Rfam database...	0.61	0.65	0.58	66	61311	48	13	35	0	36
TMR_00612	tmRNA links to Rfam database...	0.45	0.46	0.44	48	60616	67	8	54	5	56
TMR_00614	tmRNA links to Rfam database...	0.72	0.69	0.76	72	60980	34	3	20	11	32
TMR_00615	tmRNA links to Rfam database...	0.67	0.69	0.65	66	63802	46	14	21	11	30
TMR_00616	tmRNA links to Rfam database...	0.42	0.41	0.42	41	67063	65	12	45	8	58
TMR_00617	tmRNA links to Rfam database...	0.29	0.34	0.25	20	34635	70	17	44	9	38
TMR_00623	tmRNA links to Rfam database...	0.52	0.51	0.54	55	61323	53	2	45	6	53
TMR_00624	tmRNA links to Rfam database...	0.80	0.75	0.84	81	62385	30	4	11	15	27
TMR_00625	tmRNA links to Rfam database...	0.29	0.30	0.28	32	78887	87	22	62	3	74
TMR_00626	tmRNA links to Rfam database...	0.52	0.50	0.54	55	67794	52	8	39	5	54
TMR_00680	tmRNA links to Rfam database...	0.25	0.26	0.24	26	67789	89	15	66	8	73
TMR_00681	tmRNA links to Rfam database...	0.57	0.57	0.58	55	65971	52	4	36	12	42
TMR_00683	tmRNA links to Rfam database...	0.25	0.26	0.23	26	82917	95	19	66	10	74
TMR_00686	tmRNA links to Rfam database...	0.51	0.46	0.57	50	71165	50	9	29	12	58
TMR_00687	tmRNA links to Rfam database...	0.34	0.36	0.33	40	71510	83	12	69	2	71
TMR_00696	tmRNA links to Rfam database...	0.27	0.25	0.29	29	84977	86	12	60	14	85
TMR_00698	tmRNA links to Rfam database...	0.34	0.35	0.33	36	63081	73	18	55	0	68
TMR_00699	tmRNA links to Rfam database...	0.67	0.62	0.72	63	67074	29	4	20	5	39
TMR_00702	tmRNA links to Rfam database...	0.36	0.32	0.40	32	67081	57	5	43	9	68
TMR_00703	tmRNA links to Rfam database...	0.59	0.56	0.62	55	67439	43	6	28	9	44
TMR_00706	tmRNA links to Rfam database...	0.62	0.58	0.67	60	66340	34	6	24	4	43
TMR_00711	tmRNA links to Rfam database...	0.56	0.58	0.54	57	67791	56	16	32	8	41
TMR_00712	tmRNA links to Rfam database...	0.31	0.32	0.31	35	78493	90	17	61	12	74
TMR_00716	tmRNA links to Rfam database...	0.24	0.24	0.25	24	62738	78	10	63	5	76

^top

Performance of PknotsRG - scored lower in this pairwise comparison

1. Total counts & total scores for PknotsRG

Total Base Pair Counts
Total TP	30067
Total TN	43336046
Total FP	38522
Total FP CONTRA	5928
Total FP INCONS	27296
Total FP COMP	5298
Total FN	32808

Total Scores
MCC	0.476
Average MCC ± 95% Confidence Intervals	0.473 ± 0.014
Sensitivity	0.478
Positive Predictive Value	0.475
Nr of predictions	610

^top

2. Individual counts for PknotsRG [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.63	0.61	0.64	46	34119	33	3	23	7	29
ASE_00002	RNaseP_arch links to Rfam database...	0.50	0.49	0.51	36	35440	40	5	30	5	37
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.71	0.70	69	47796	32	9	21	2	28
ASE_00005	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	68	57870	38	0	32	6	49
ASE_00006	RNaseP_bact_a links to Rfam database...	0.57	0.58	0.57	54	47491	44	7	34	3	39
ASE_00007	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.61	60	59586	43	1	38	4	50
ASE_00009	RNaseP_arch links to Rfam database...	0.78	0.75	0.82	50	26045	13	0	11	2	17
ASE_00012	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.61	67	73811	49	2	40	7	56
ASE_00014	RNaseP_arch links to Rfam database...	0.24	0.25	0.24	26	54178	82	8	73	1	80
ASE_00017	RNaseP_nuc links to Rfam database...	0.14	0.16	0.13	10	50964	85	8	58	19	54
ASE_00018	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	102	80479	22	3	17	2	32
ASE_00020	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.53	66	73796	58	8	50	0	60
ASE_00021	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	86	104056	61	7	47	7	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.46	0.44	0.48	54	82915	65	6	53	6	70
ASE_00023	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	80	84131	47	5	39	3	47
ASE_00025	RNaseP_nuc links to Rfam database...	0.23	0.24	0.22	17	78528	115	12	49	54	54
ASE_00026	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.54	56	59582	55	1	46	8	54
ASE_00028	RNaseP_bact_b links to Rfam database...	0.59	0.56	0.61	71	84550	53	4	41	8	55
ASE_00029	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	66	82916	48	4	42	2	56
ASE_00030	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.68	90	85358	45	3	40	2	55
ASE_00031	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.65	76	86619	50	2	39	9	50
ASE_00032	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	64	80094	47	6	36	5	54
ASE_00033	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.57	58	64879	45	5	38	2	63
ASE_00035	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	33	70398	76	11	58	7	85
ASE_00036	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.48	59	75731	68	8	57	3	73
ASE_00037	RNaseP_bact_a links to Rfam database...	0.24	0.23	0.25	25	59239	79	3	73	3	85
ASE_00038	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	55	53529	45	4	40	1	46
ASE_00040	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.52	63	78882	64	5	53	6	70
ASE_00041	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.55	54	57532	48	2	42	4	54
ASE_00042	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.58	72	89975	54	3	50	1	73
ASE_00044	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	71	54513	35	3	28	4	34
ASE_00046	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.69	59	50317	27	2	25	0	44
ASE_00047	RNaseP_bact_a links to Rfam database...	0.33	0.31	0.35	40	74190	76	5	70	1	90
ASE_00052	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	52	61330	48	2	41	5	60
ASE_00053	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.60	77	79273	54	5	46	3	56
ASE_00056	-	0.33	0.33	0.32	24	30802	53	6	44	3	48
ASE_00057	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.65	81	82090	49	8	36	5	53
ASE_00064	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	38	45364	53	5	44	4	51
ASE_00066	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	83	72273	35	4	30	1	47
ASE_00068	RNaseP_bact_a links to Rfam database...	0.24	0.24	0.25	20	37596	59	5	54	0	65
ASE_00069	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.71	91	82899	44	5	33	6	49
ASE_00074	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.59	68	67781	47	6	41	0	51
ASE_00075	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	96	108676	46	2	37	7	66
ASE_00076	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	67	68158	42	2	38	2	51
ASE_00077	RNaseP_bact_a links to Rfam database...	0.25	0.24	0.25	21	45067	67	7	55	5	65
ASE_00078	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.68	56	42989	31	5	21	5	27
ASE_00079	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	50	55517	44	5	39	0	50
ASE_00080	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	54	71519	61	5	53	3	69
ASE_00081	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.54	51	49676	44	5	38	1	46
ASE_00082	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.54	54	70400	60	1	45	14	62
ASE_00083	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	82	62382	26	2	15	9	28
ASE_00084	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	68	53534	29	6	20	3	31
ASE_00087	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.65	83	88283	49	5	39	5	61
ASE_00089	-	0.29	0.28	0.30	22	31302	52	1	50	1	57
ASE_00090	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.59	60	55509	47	2	40	5	41
ASE_00092	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	79	63442	30	0	25	5	34
ASE_00096	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.50	54	63437	58	4	51	3	61
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	60	64506	56	6	48	2	60
ASE_00100	RNaseP_nuc links to Rfam database...	0.20	0.22	0.19	17	82125	115	16	57	42	59
ASE_00102	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.44	68	117699	89	8	80	1	98
ASE_00104	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.68	75	64151	36	3	32	1	44
ASE_00105	RNaseP_bact_a links to Rfam database...	0.38	0.36	0.40	40	64160	66	9	52	5	71
ASE_00107	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	57	73039	57	2	55	0	70
ASE_00108	RNaseP_nuc links to Rfam database...	0.24	0.29	0.20	18	46881	83	21	51	11	45
ASE_00111	RNaseP_nuc links to Rfam database...	0.14	0.18	0.11	10	49998	88	24	54	10	47
ASE_00112	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.84	87	75362	23	5	12	6	29
ASE_00115	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.49	47	54520	56	1	47	8	54
ASE_00116	RNaseP_arch links to Rfam database...	0.19	0.20	0.19	13	31558	58	2	53	3	53
ASE_00118	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.45	45	60627	57	4	50	3	57
ASE_00119	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.69	70	62734	33	1	30	2	38
ASE_00120	RNaseP_arch links to Rfam database...	0.35	0.34	0.36	32	46883	56	9	47	0	62
ASE_00121	RNaseP_arch links to Rfam database...	0.25	0.25	0.26	23	45061	68	9	57	2	69
ASE_00122	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.28	24	43280	61	4	57	0	64
ASE_00123	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.42	33	38424	50	2	44	4	52
ASE_00125	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	55	39255	30	4	26	0	33
ASE_00126	RNaseP_bact_a links to Rfam database...	0.79	0.79	0.78	65	40387	21	3	15	3	17
ASE_00128	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.80	73	53210	25	2	16	7	27
ASE_00129	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	56	62730	53	5	44	4	55
ASE_00131	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.72	49	39272	29	0	19	10	36
ASE_00132	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.68	60	50315	30	4	24	2	35
ASE_00134	RNaseP_bact_a links to Rfam database...	0.56	0.57	0.55	54	50305	49	4	40	5	41
ASE_00135	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.48	50	63085	59	8	47	4	59
ASE_00136	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	43	48121	50	1	40	9	49
ASE_00137	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	42	48423	53	5	46	2	56
ASE_00138	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	42	40393	35	4	31	0	39
ASE_00139	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	76	54199	15	2	8	5	28
ASE_00140	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.74	81	70767	33	3	25	5	44
ASE_00142	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.79	85	67054	26	4	18	4	37
ASE_00145	RNaseP_arch links to Rfam database...	0.43	0.42	0.44	47	70019	64	6	53	5	64
ASE_00146	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.56	57	70775	47	0	44	3	67
ASE_00148	RNaseP_arch links to Rfam database...	0.70	0.67	0.73	103	112433	42	4	35	3	51
ASE_00151	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.43	40	51911	52	12	40	0	58
ASE_00153	RNaseP_nuc links to Rfam database...	0.61	0.62	0.61	45	57556	71	2	27	42	28
ASE_00154	RNaseP_arch links to Rfam database...	0.64	0.63	0.65	67	65238	39	4	32	3	40
ASE_00155	RNaseP_arch links to Rfam database...	0.51	0.50	0.52	71	93391	71	10	56	5	71
ASE_00163	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.30	27	53211	72	7	56	9	66
ASE_00165	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	56	52881	39	7	31	1	45
ASE_00168	RNaseP_nuc links to Rfam database...	0.23	0.28	0.19	18	60629	92	25	54	13	46
ASE_00169	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.51	52	57190	53	7	42	4	55
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	63	48741	25	2	22	1	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.73	66	48425	25	5	20	0	28
ASE_00172	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	70	58896	35	4	26	5	36
ASE_00174	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	56	60980	39	3	36	0	53
ASE_00175	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	47	59926	62	6	52	4	60
ASE_00176	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	61	59934	39	5	31	3	49
ASE_00179	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.62	55	44164	34	7	27	0	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.75	69	51268	29	2	21	6	31
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	56	57528	50	3	43	4	50
ASE_00182	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	64	84129	65	6	56	3	72
ASE_00183	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	80	61316	33	2	27	4	33
ASE_00184	RNaseP_bact_a links to Rfam database...	0.63	0.64	0.63	65	54511	39	10	29	0	37
ASE_00185	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.65	75	73420	43	5	36	2	53
ASE_00186	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	92	78885	31	3	23	5	40
ASE_00187	RNaseP_arch links to Rfam database...	0.51	0.50	0.52	57	68526	57	7	45	5	58
ASE_00189	RNaseP_bact_b links to Rfam database...	0.57	0.55	0.60	56	63097	42	9	28	5	46
ASE_00190	RNaseP_bact_b links to Rfam database...	0.46	0.44	0.47	40	45366	45	8	37	0	50
ASE_00192	RNaseP_bact_b links to Rfam database...	0.46	0.44	0.48	59	84544	69	10	53	6	74
ASE_00194	RNaseP_bact_b links to Rfam database...	0.46	0.45	0.47	53	73423	64	8	52	4	66
ASE_00195	-	0.59	0.58	0.61	77	86193	55	3	47	5	56
ASE_00196	RNaseP_arch links to Rfam database...	0.70	0.69	0.71	52	31553	24	2	19	3	23
ASE_00197	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.51	66	89124	66	4	59	3	79
ASE_00198	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	54	52551	45	6	39	0	48
ASE_00203	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	65	46575	29	6	19	4	31
ASE_00204	RNaseP_bact_b links to Rfam database...	0.63	0.60	0.67	67	67796	38	7	26	5	45
ASE_00205	RNaseP_arch links to Rfam database...	0.56	0.56	0.56	50	45967	44	7	32	5	40
ASE_00209	RNaseP_arch links to Rfam database...	0.28	0.27	0.29	24	42989	58	4	54	0	64
ASE_00210	RNaseP_arch links to Rfam database...	0.59	0.60	0.59	39	27195	28	6	21	1	26
ASE_00212	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.55	77	93822	66	5	57	4	71
ASE_00213	RNaseP_arch links to Rfam database...	0.73	0.73	0.73	48	27195	19	6	12	1	18
ASE_00214	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	78	56182	28	3	17	8	25
ASE_00215	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.57	52	48425	42	4	35	3	47
ASE_00216	RNaseP_bact_a links to Rfam database...	0.60	0.61	0.60	50	39256	36	8	26	2	32
ASE_00217	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.32	26	40388	60	6	50	4	64
ASE_00221	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	45	64514	65	3	58	4	72
ASE_00222	RNaseP_arch links to Rfam database...	0.62	0.60	0.64	94	111954	55	9	44	2	63
ASE_00227	RNaseP_bact_a links to Rfam database...	0.31	0.29	0.33	39	78884	80	5	75	0	94
ASE_00228	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.58	51	46883	37	14	23	0	35
ASE_00229	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.59	50	42401	39	5	30	4	37
ASE_00231	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.70	66	47801	28	5	23	0	30
ASE_00232	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	46	38422	38	3	32	3	38
ASE_00234	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.55	63	75351	56	2	50	4	66
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45672	99	25	56	18	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.50	54	64152	58	4	51	3	60
ASE_00240	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	58	46577	37	2	28	7	35
ASE_00241	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	47	43875	43	0	34	9	40
ASE_00242	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	76	60975	27	3	21	3	36
ASE_00246	RNaseP_nuc links to Rfam database...	0.16	0.18	0.15	12	48124	82	19	50	13	55
ASE_00247	RNaseP_nuc links to Rfam database...	0.17	0.19	0.16	12	54210	91	16	47	28	52
ASE_00248	RNaseP_bact_a links to Rfam database...	0.46	0.42	0.49	48	62384	49	3	46	0	66
ASE_00250	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.64	77	78883	46	4	39	3	54
ASE_00252	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.62	94	115289	62	5	52	5	74
ASE_00254	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.63	49	36778	33	5	24	4	33
ASE_00255	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	59	74572	60	7	53	0	71
ASE_00257	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.65	62	50944	34	0	34	0	35
ASE_00259	RNaseP_bact_a links to Rfam database...	0.35	0.33	0.36	40	73043	71	8	62	1	81
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	74	70380	47	5	41	1	46
ASE_00264	RNaseP_nuc links to Rfam database...	0.84	0.78	0.90	78	49054	24	0	9	15	22
ASE_00267	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	39	45069	51	5	37	9	49
ASE_00270	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.64	79	72267	45	8	36	1	49
ASE_00274	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.50	48	55515	48	8	40	0	55
ASE_00277	RNaseP_bact_a links to Rfam database...	0.39	0.40	0.39	36	48113	58	9	47	2	55
ASE_00279	RNaseP_bact_a links to Rfam database...	0.38	0.36	0.41	36	53213	58	1	51	6	65
ASE_00280	RNaseP_bact_a links to Rfam database...	0.37	0.37	0.38	36	51908	62	6	53	3	62
ASE_00281	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.58	45	44473	39	0	33	6	43
ASE_00282	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.42	52	77692	72	6	65	1	75
ASE_00283	RNaseP_bact_a links to Rfam database...	0.74	0.73	0.76	78	61673	27	5	20	2	29
ASE_00284	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	65	58210	43	4	32	7	43
ASE_00285	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	71	68899	43	2	34	7	51
ASE_00286	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	39	46574	61	3	49	9	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	57	54855	40	0	34	6	46
ASE_00288	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.48	42	45968	47	3	43	1	51
ASE_00289	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.71	98	100886	44	4	37	3	59
ASE_00291	-	0.37	0.36	0.39	34	48429	54	9	44	1	60
ASE_00292	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	91	81690	34	4	25	5	47
ASE_00294	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	127	114328	29	3	23	3	44
ASE_00295	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.57	65	73805	53	5	45	3	66
ASE_00296	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.33	43	91677	88	8	78	2	102
ASE_00297	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.54	52	52878	50	3	42	5	46
ASE_00298	RNaseP_bact_a links to Rfam database...	0.19	0.19	0.19	21	67420	90	9	78	3	92
ASE_00299	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.56	55	49357	48	8	35	5	45
ASE_00313	RNaseP_nuc links to Rfam database...	0.72	0.72	0.73	64	62393	46	6	18	22	25
ASE_00316	RNaseP_nuc links to Rfam database...	0.56	0.57	0.54	56	107777	87	13	34	40	42
ASE_00318	RNaseP_bact_b links to Rfam database...	0.64	0.61	0.67	72	80092	40	13	23	4	46
ASE_00327	RNaseP_nuc links to Rfam database...	0.80	0.78	0.82	69	57207	34	4	11	19	20
ASE_00328	RNaseP_bact_b links to Rfam database...	0.41	0.41	0.41	46	72659	73	3	63	7	66
ASE_00330	RNaseP_nuc links to Rfam database...	0.75	0.74	0.75	67	56191	42	3	19	20	23
ASE_00332	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	71	81686	59	2	51	6	67
ASE_00335	RNaseP_bact_b links to Rfam database...	0.52	0.52	0.52	60	75350	64	13	43	8	56
ASE_00337	RNaseP_nuc links to Rfam database...	0.36	0.37	0.36	26	39268	58	4	42	12	45
ASE_00338	RNaseP_nuc links to Rfam database...	0.72	0.69	0.74	68	66338	41	7	17	17	30
ASE_00339	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.53	62	80084	65	5	49	11	57
ASE_00340	RNaseP_bact_a links to Rfam database...	0.71	0.72	0.71	61	45970	34	7	18	9	24
ASE_00342	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.50	52	62378	51	1	50	0	63
ASE_00343	RNaseP_bact_a links to Rfam database...	0.60	0.62	0.58	70	83316	60	9	41	10	43
ASE_00346	RNaseP_arch links to Rfam database...	0.30	0.29	0.31	28	48115	64	7	55	2	69
ASE_00353	RNaseP_bact_a links to Rfam database...	0.46	0.47	0.45	50	57860	60	11	49	0	57
ASE_00359	RNaseP_arch links to Rfam database...	0.49	0.49	0.49	39	42698	46	3	38	5	41
ASE_00360	RNaseP_arch links to Rfam database...	0.30	0.31	0.30	20	29337	50	11	35	4	45
ASE_00361	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.38	46	75345	78	9	66	3	81
ASE_00362	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.63	56	48116	36	6	27	3	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.54	0.55	0.53	52	51262	46	5	41	0	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.33	33	54184	72	7	61	4	72
ASE_00366	RNaseP_bact_a links to Rfam database...	0.52	0.54	0.50	53	58547	55	12	41	2	45
ASE_00367	RNaseP_bact_a links to Rfam database...	0.33	0.35	0.32	30	42976	65	8	57	0	56
ASE_00369	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	72	55841	37	2	30	5	35
ASE_00370	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.66	53	41825	27	5	22	0	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.72	71	51905	30	5	22	3	29
ASE_00374	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	49	44764	37	8	29	0	39
ASE_00375	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	59	60280	42	6	33	3	51
ASE_00376	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	53	56855	48	4	41	3	52
ASE_00377	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	71	57531	34	3	25	6	36
ASE_00379	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	39	45969	55	7	41	7	50
ASE_00380	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.47	44	54853	54	1	48	5	55
ASE_00382	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.52	43	41822	43	6	34	3	41
ASE_00383	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	45	54516	59	4	50	5	60
ASE_00384	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.75	65	48429	27	4	18	5	27
ASE_00385	RNaseP_bact_a links to Rfam database...	0.42	0.43	0.41	35	41819	52	6	45	1	46
ASE_00386	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	51	50306	51	4	42	5	45
ASE_00387	RNaseP_bact_a links to Rfam database...	0.36	0.37	0.35	38	55837	70	6	64	0	66
ASE_00388	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	60	45666	32	1	26	5	29
ASE_00390	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.53	41	42117	44	6	31	7	44
ASE_00393	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	32	47810	59	3	50	6	61
ASE_00394	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.73	67	46879	28	3	22	3	26
ASE_00395	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	41	41539	45	1	35	9	43
ASE_00396	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.38	30	41536	55	5	45	5	53
ASE_00397	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.52	54	54511	50	7	43	0	51
ASE_00398	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	64	55848	36	1	32	3	40
ASE_00400	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	55	57868	48	5	42	1	51
ASE_00401	RNaseP_bact_a links to Rfam database...	0.55	0.56	0.54	70	76898	60	13	47	0	56
ASE_00402	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.61	50	42404	35	4	28	3	35
ASE_00403	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.50	47	55851	51	3	44	4	60
ASE_00404	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.56	47	42987	42	0	37	5	38
ASE_00406	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	62	48742	33	2	22	9	32
ASE_00408	-	0.51	0.49	0.53	35	32319	35	2	29	4	36
ASE_00409	-	0.45	0.46	0.45	38	40956	47	7	40	0	45
ASE_00411	RNaseP_bact_a links to Rfam database...	0.26	0.27	0.26	24	49362	69	12	57	0	65
ASE_00412	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.39	39	58212	60	13	47	0	66
ASE_00413	RNaseP_bact_a links to Rfam database...	0.46	0.49	0.43	40	44457	54	14	40	0	41
ASE_00414	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.40	34	46274	59	9	43	7	61
ASE_00415	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.51	53	54843	52	7	43	2	50
ASE_00416	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.75	86	77306	36	1	28	7	41
ASE_00417	RNaseP_arch links to Rfam database...	0.36	0.37	0.35	37	54508	73	10	60	3	63
ASE_00418	RNaseP_arch links to Rfam database...	0.21	0.21	0.21	16	38703	67	8	54	5	59
ASE_00419	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.80	75	54852	23	4	15	4	28
ASE_00422	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.49	44	46881	51	5	41	5	50
ASE_00423	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	53	56847	56	9	44	3	56
ASE_00426	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.40	42	60971	62	5	57	0	66
ASE_00428	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	65	76521	54	5	45	4	60
ASE_00429	-	0.36	0.38	0.35	25	28132	47	10	36	1	41
ASE_00430	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.66	59	46881	36	5	26	5	38
ASE_00431	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.70	56	46280	36	3	21	12	39
ASE_00434	RNaseP_bact_b links to Rfam database...	0.63	0.60	0.66	66	68165	46	9	25	12	44
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.44	55	79275	71	4	67	0	80
ASE_00438	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.45	49	65957	60	6	54	0	67
ASE_00441	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	83	64161	28	1	16	11	29
ASE_00447	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.52	54	60274	55	1	49	5	62
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.23	25	64151	91	6	79	6	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.52	59	70763	57	3	51	3	66
CRW_00004	-	0.49	0.50	0.48	66	154153	104	12	59	33	65
CRW_00005	-	0.55	0.55	0.54	73	137941	84	11	50	23	59
CRW_00007	-	0.35	0.38	0.33	51	144836	110	30	74	6	82
CRW_00009	-	0.59	0.60	0.58	83	137933	83	9	50	24	55
CRW_00010	-	0.58	0.60	0.57	75	102699	67	13	44	10	51
CRW_00011	-	0.65	0.66	0.63	91	118197	65	7	46	12	47
CRW_00012	-	0.34	0.37	0.32	52	146990	117	28	83	6	89
CRW_00013	Intron_gpI links to Rfam database...	0.16	0.17	0.15	19	103617	114	25	79	10	96
CRW_00014	-	0.38	0.37	0.39	46	103622	84	11	61	12	77
CRW_00016	Intron_gpI links to Rfam database...	0.64	0.62	0.66	74	77309	50	5	33	12	46
CRW_00017	-	0.40	0.44	0.36	40	92123	93	18	54	21	51
CRW_00018	-	0.43	0.48	0.39	58	182561	127	33	58	36	63
CRW_00019	-	0.69	0.69	0.70	94	127631	63	6	34	23	43
CRW_00423	-	0.20	0.21	0.19	40	242348	179	26	142	11	149
CRW_00429	-	0.15	0.15	0.15	36	306701	203	48	151	4	197
CRW_00605	-	0.41	0.41	0.40	29	183848	142	13	31	98	41
CRW_00608	-	0.71	0.70	0.72	55	35702	25	6	15	4	24
CRW_00610	Intron_gpI links to Rfam database...	0.49	0.49	0.49	40	36233	43	7	35	1	41
CRW_00611	-	0.79	0.77	0.82	58	31304	17	0	13	4	17
CRW_00612	-	0.39	0.42	0.36	39	270372	196	5	64	127	54
CRW_00613	Intron_gpI links to Rfam database...	0.64	0.59	0.69	46	34913	29	1	20	8	32
CRW_00614	Intron_gpI links to Rfam database...	0.09	0.11	0.07	6	121690	145	21	54	70	51
CRW_00618	Intron_gpI links to Rfam database...	0.11	0.11	0.10	7	56211	83	13	49	21	54
CRW_00619	Intron_gpI links to Rfam database...	0.38	0.44	0.34	32	164930	138	28	35	75	41
CRW_00620	Intron_gpI links to Rfam database...	0.16	0.21	0.13	13	150871	158	31	60	67	50
CRW_00621	Intron_gpI links to Rfam database...	0.10	0.10	0.10	7	153109	156	13	52	91	64
CRW_00623	Intron_gpI links to Rfam database...	0.30	0.29	0.32	24	129720	119	11	40	68	59
CRW_00626	-	0.50	0.55	0.45	57	100899	86	26	43	17	47
CRW_00629	-	0.49	0.48	0.50	59	91260	61	12	47	2	63
CRW_00632	-	0.61	0.62	0.60	79	82896	59	9	44	6	49
CRW_00633	Intron_gpI links to Rfam database...	0.50	0.48	0.52	51	63447	50	10	38	2	55
CRW_00634	Intron_gpI links to Rfam database...	0.56	0.60	0.52	56	64513	53	17	34	2	38
CRW_00635	-	0.48	0.48	0.48	66	109140	82	10	62	10	71
CRW_00636	-	0.46	0.46	0.46	66	114817	82	10	67	5	77
CRW_00637	-	0.34	0.36	0.33	57	133730	120	21	95	4	101
CRW_00639	-	0.75	0.75	0.74	104	126615	53	15	22	16	34
CRW_00641	-	0.44	0.46	0.43	35	39821	55	10	37	8	41
CRW_00642	-	0.40	0.45	0.37	29	47199	58	14	36	8	36
CRW_00643	-	0.40	0.43	0.38	53	123116	98	27	60	11	69
CRW_00645	-	0.61	0.61	0.60	41	35443	39	5	22	12	26
CRW_00646	-	0.53	0.56	0.51	36	34909	41	5	30	6	28
CRW_00648	-	0.59	0.62	0.56	92	137912	74	18	53	3	56
CRW_00649	-	0.66	0.70	0.63	87	204341	121	14	38	69	37
CRW_00650	-	0.48	0.49	0.48	69	112906	80	9	66	5	73
CRW_00651	-	0.47	0.50	0.44	61	99989	80	20	58	2	60
CRW_00652	-	0.66	0.68	0.64	88	132217	71	8	42	21	42
CRW_00653	-	0.89	0.90	0.87	121	94691	20	8	10	2	13
CRW_00654	-	0.72	0.71	0.73	88	78090	37	4	28	5	36
CRW_00655	-	0.62	0.61	0.62	76	89131	50	9	37	4	48
CRW_00656	-	0.66	0.67	0.65	86	90392	53	13	34	6	43
CRW_00657	-	0.76	0.76	0.76	103	105895	36	3	29	4	33
CRW_00658	-	0.44	0.45	0.42	46	74582	64	20	43	1	56
CRW_00659	-	0.46	0.49	0.43	30	32315	49	10	30	9	31
CRW_00660	-	0.60	0.62	0.59	37	22092	26	7	19	0	23
CRW_00661	-	0.19	0.22	0.17	11	24245	56	15	39	2	40
CRW_00662	-	0.40	0.42	0.39	27	28611	49	7	35	7	38
CRW_00663	-	0.00	0.00	0.00	0	26031	76	12	63	1	61
CRW_00664	-	0.14	0.15	0.14	12	53540	87	15	61	11	66
CRW_00665	-	0.17	0.19	0.16	9	23597	50	10	37	3	39
CRW_00666	-	0.43	0.44	0.43	55	96014	84	11	61	12	71
CRW_00668	-	0.52	0.54	0.50	81	163717	97	17	63	17	69
CRW_00669	-	0.57	0.55	0.58	66	97347	65	9	39	17	53
CRW_00670	Intron_gpI links to Rfam database...	0.75	0.74	0.77	89	70009	30	5	22	3	31
CRW_00671	Intron_gpI links to Rfam database...	0.77	0.76	0.78	89	62721	30	6	19	5	28
CRW_00672	Intron_gpI links to Rfam database...	0.53	0.55	0.52	61	72273	60	21	35	4	50
CRW_00673	-	0.72	0.79	0.66	83	100002	56	25	18	13	22
CRW_00674	Intron_gpI links to Rfam database...	0.52	0.52	0.52	65	83310	63	12	49	2	59
CRW_00676	Intron_gpI links to Rfam database...	0.56	0.60	0.52	69	93396	67	13	50	4	46
CRW_00677	-	0.61	0.63	0.58	66	71897	54	13	34	7	39
CRW_00679	-	0.30	0.31	0.29	33	76521	88	14	68	6	74
CRW_00681	-	0.51	0.55	0.47	62	112919	84	22	47	15	50
CRW_00685	-	0.57	0.62	0.53	66	156955	102	19	40	43	40
CRW_00686	-	0.55	0.57	0.54	71	95134	69	7	54	8	54
CRW_00687	-	0.29	0.30	0.29	20	28610	51	12	38	1	46
CRW_00688	-	0.85	0.86	0.84	49	21887	12	0	9	3	8
CRW_00689	-	0.69	0.70	0.68	54	33590	28	11	15	2	23
CRW_00690	-	0.64	0.64	0.65	44	33343	28	11	13	4	25
CRW_00691	-	0.57	0.60	0.55	40	27188	35	6	27	2	27
CRW_00692	Intron_gpI links to Rfam database...	0.43	0.46	0.41	41	68536	66	18	40	8	49
CRW_00693	-	0.61	0.60	0.63	73	89137	59	2	41	16	49
CRW_00694	-	0.63	0.63	0.63	77	85782	52	6	40	6	45
CRW_00699	-	0.63	0.63	0.63	79	91680	48	6	41	1	47
CRW_00700	-	0.63	0.63	0.64	93	180755	88	9	44	35	54
CRW_00703	-	0.74	0.74	0.74	49	40404	31	3	14	14	17
CRW_00714	-	0.20	0.22	0.18	24	186222	162	28	81	53	83
CRW_00715	-	0.76	0.73	0.78	76	69281	24	3	18	3	28
CRW_00716	-	0.84	0.85	0.83	76	193661	103	3	13	87	13
CRW_00717	-	0.66	0.66	0.66	97	153589	66	10	39	17	51
CRW_00718	-	0.81	0.80	0.83	153	189851	52	6	26	20	38
CRW_00719	-	0.55	0.56	0.55	51	230088	147	9	33	105	40
CRW_00720	-	0.17	0.19	0.16	17	208230	166	21	67	78	74
CRW_00721	-	0.51	0.59	0.45	40	58564	64	19	30	15	28
CRW_00764	-	0.06	0.07	0.06	13	252912	196	31	160	5	183
CRW_00775	-	0.25	0.26	0.23	55	314586	190	42	138	10	157
CRW_00815	-	0.71	0.71	0.71	112	159737	52	12	34	6	46
CRW_00816	-	0.36	0.38	0.35	49	143775	111	19	73	19	80
CRW_00820	-	0.57	0.59	0.55	86	136347	79	13	57	9	59
PDB_00072	-	0.37	0.39	0.36	81	148017	142	17	125	0	129
PDB_00078	-	0.49	0.47	0.51	54	49665	51	6	45	0	61
PDB_00079	-	0.70	0.65	0.74	93	121646	65	8	24	33	49
PDB_00278	-	0.19	0.19	0.19	14	24904	58	7	51	0	58
PDB_00403	-	0.52	0.53	0.51	81	124591	86	16	62	8	72
PDB_00423	-	0.24	0.23	0.26	17	26731	48	2	46	0	57
PDB_00701	-	0.47	0.46	0.49	50	45349	53	5	47	1	59
PDB_00747	-	0.72	0.65	0.80	52	24466	13	0	13	0	28
PDB_00827	Intron_gpI links to Rfam database...	0.50	0.46	0.55	37	26961	31	1	29	1	44
PDB_00917	-	0.50	0.48	0.52	46	35157	48	4	38	6	49
PDB_00919	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.54	48	44164	44	3	38	3	55
PDB_01129	-	0.26	0.28	0.25	20	35430	66	16	45	5	51
PDB_01157	-	0.28	0.28	0.28	27	49991	68	14	54	0	71
PDB_01166	-	0.45	0.43	0.47	92	181909	109	22	83	4	120
RFA_00597	Telomerase-vert links to Rfam database...	0.52	0.53	0.51	58	97789	83	8	48	27	51
RFA_00598	Telomerase-vert links to Rfam database...	0.68	0.66	0.69	67	84569	57	6	24	27	34
RFA_00599	Telomerase-vert links to Rfam database...	0.63	0.68	0.60	75	101349	70	18	33	19	36
RFA_00600	Telomerase-vert links to Rfam database...	0.63	0.70	0.56	70	120170	88	32	23	33	30
RFA_00601	Telomerase-vert links to Rfam database...	0.48	0.50	0.46	57	99111	86	21	46	19	57
RFA_00602	Telomerase-vert links to Rfam database...	0.69	0.72	0.67	83	101351	61	10	31	20	33
TMR_00007	tmRNA links to Rfam database...	0.29	0.28	0.30	30	61677	74	11	58	5	78
TMR_00008	tmRNA links to Rfam database...	0.54	0.54	0.54	57	65960	58	9	40	9	49
TMR_00010	tmRNA links to Rfam database...	0.23	0.24	0.23	23	57869	78	13	65	0	73
TMR_00012	tmRNA links to Rfam database...	0.28	0.28	0.27	23	64535	77	20	42	15	58
TMR_00014	tmRNA links to Rfam database...	0.57	0.55	0.59	61	68531	50	12	31	7	49
TMR_00017	tmRNA links to Rfam database...	0.36	0.37	0.36	38	67055	74	15	53	6	64
TMR_00018	tmRNA links to Rfam database...	0.30	0.32	0.30	29	64522	75	10	59	6	63
TMR_00028	tmRNA links to Rfam database...	0.31	0.33	0.29	32	62725	82	14	64	4	65
TMR_00030	tmRNA links to Rfam database...	0.25	0.25	0.24	28	75740	92	12	75	5	83
TMR_00034	tmRNA links to Rfam database...	0.65	0.65	0.66	71	59923	43	12	25	6	39
TMR_00035	tmRNA links to Rfam database...	0.38	0.40	0.36	39	67789	73	9	59	5	59
TMR_00036	tmRNA links to Rfam database...	0.59	0.59	0.58	60	90422	72	11	32	29	41
TMR_00038	tmRNA links to Rfam database...	0.24	0.25	0.24	27	71141	89	12	73	4	83
TMR_00042	tmRNA links to Rfam database...	0.24	0.24	0.24	24	62735	79	9	67	3	74
TMR_00046	tmRNA links to Rfam database...	0.54	0.55	0.54	53	62736	49	11	35	3	43
TMR_00047	tmRNA links to Rfam database...	0.26	0.30	0.23	17	48441	74	16	42	16	40
TMR_00048	tmRNA links to Rfam database...	0.32	0.34	0.30	32	64875	78	9	64	5	63
TMR_00049	tmRNA links to Rfam database...	0.52	0.53	0.51	46	63099	57	9	36	12	41
TMR_00051	tmRNA links to Rfam database...	0.65	0.61	0.70	57	65621	44	2	23	19	37
TMR_00055	tmRNA links to Rfam database...	0.14	0.15	0.14	17	78881	105	22	83	0	97
TMR_00057	tmRNA links to Rfam database...	0.14	0.16	0.12	13	73810	107	30	67	10	66
TMR_00061	tmRNA links to Rfam database...	0.22	0.23	0.22	23	59579	90	10	73	7	76
TMR_00062	tmRNA links to Rfam database...	0.52	0.54	0.50	56	78495	66	16	39	11	48
TMR_00064	tmRNA links to Rfam database...	0.40	0.40	0.40	41	76926	69	19	42	8	62
TMR_00065	tmRNA links to Rfam database...	0.54	0.57	0.51	60	76519	59	16	41	2	46
TMR_00067	tmRNA links to Rfam database...	0.44	0.45	0.43	51	82095	73	14	55	4	63
TMR_00073	tmRNA links to Rfam database...	0.46	0.45	0.47	53	65591	60	6	53	1	64
TMR_00076	tmRNA links to Rfam database...	0.33	0.34	0.32	34	70770	78	15	57	6	66
TMR_00080	tmRNA links to Rfam database...	0.59	0.61	0.56	59	70395	49	16	30	3	37
TMR_00081	tmRNA links to Rfam database...	0.47	0.45	0.48	48	67062	52	12	39	1	58
TMR_00082	tmRNA links to Rfam database...	0.63	0.64	0.63	61	67799	41	12	24	5	35
TMR_00083	tmRNA links to Rfam database...	0.56	0.57	0.56	60	68157	51	13	35	3	45
TMR_00092	tmRNA links to Rfam database...	0.64	0.67	0.62	68	67418	47	11	31	5	33
TMR_00093	tmRNA links to Rfam database...	0.50	0.53	0.48	54	64148	61	14	45	2	48
TMR_00096	tmRNA links to Rfam database...	0.45	0.46	0.43	46	64874	64	11	49	4	54
TMR_00101	tmRNA links to Rfam database...	0.44	0.44	0.44	47	64154	64	8	52	4	60
TMR_00102	tmRNA links to Rfam database...	0.33	0.35	0.31	35	64147	83	16	63	4	66
TMR_00103	tmRNA links to Rfam database...	0.56	0.56	0.55	61	64151	51	10	39	2	47
TMR_00104	-	0.08	0.10	0.07	7	66700	94	34	54	6	63
TMR_00106	tmRNA links to Rfam database...	0.47	0.49	0.45	59	89968	76	24	49	3	61
TMR_00109	tmRNA links to Rfam database...	0.36	0.35	0.36	43	88291	79	13	63	3	79
TMR_00111	tmRNA links to Rfam database...	0.31	0.32	0.29	39	90392	97	18	76	3	83
TMR_00116	tmRNA links to Rfam database...	0.67	0.66	0.67	69	64877	47	5	29	13	35
TMR_00117	tmRNA links to Rfam database...	0.60	0.60	0.60	71	80081	57	7	41	9	47
TMR_00118	tmRNA links to Rfam database...	0.37	0.38	0.37	45	81285	83	6	70	7	75
TMR_00119	tmRNA links to Rfam database...	0.53	0.54	0.53	56	71904	57	8	42	7	48
TMR_00123	tmRNA links to Rfam database...	0.46	0.47	0.46	47	66327	57	11	45	1	54
TMR_00124	tmRNA links to Rfam database...	0.46	0.48	0.45	47	70396	71	15	42	14	51
TMR_00125	tmRNA links to Rfam database...	0.50	0.49	0.52	49	64166	51	9	37	5	50
TMR_00127	tmRNA links to Rfam database...	0.24	0.25	0.23	24	62729	85	24	58	3	73
TMR_00128	tmRNA links to Rfam database...	0.40	0.40	0.40	38	60980	59	6	51	2	58
TMR_00131	tmRNA links to Rfam database...	0.28	0.27	0.28	27	64885	75	12	56	7	72
TMR_00135	tmRNA links to Rfam database...	0.59	0.57	0.61	56	62743	46	4	32	10	43
TMR_00136	tmRNA links to Rfam database...	0.27	0.30	0.24	30	74567	97	20	74	3	71
TMR_00137	tmRNA links to Rfam database...	0.27	0.28	0.26	25	60980	78	14	56	8	64
TMR_00139	tmRNA links to Rfam database...	0.56	0.60	0.52	55	62023	56	19	31	6	36
TMR_00140	tmRNA links to Rfam database...	0.52	0.52	0.51	52	73819	65	6	43	16	48
TMR_00142	tmRNA links to Rfam database...	0.45	0.47	0.44	48	70767	70	15	46	9	54
TMR_00143	tmRNA links to Rfam database...	0.45	0.46	0.45	47	64516	67	9	48	10	56
TMR_00144	tmRNA links to Rfam database...	0.25	0.26	0.23	27	74189	91	15	74	2	76
TMR_00146	tmRNA links to Rfam database...	0.87	0.88	0.86	37	32088	34	2	4	28	5
TMR_00150	tmRNA links to Rfam database...	0.71	0.71	0.71	30	43029	49	2	10	37	12
TMR_00152	tmRNA links to Rfam database...	0.25	0.26	0.25	30	81286	101	13	77	11	85
TMR_00155	tmRNA links to Rfam database...	0.49	0.47	0.52	49	61682	53	3	42	8	55
TMR_00156	tmRNA links to Rfam database...	0.20	0.20	0.21	19	60286	77	9	64	4	78
TMR_00158	tmRNA links to Rfam database...	0.43	0.42	0.44	42	60630	60	3	51	6	57
TMR_00159	tmRNA links to Rfam database...	0.23	0.25	0.22	23	62023	87	18	64	5	69
TMR_00160	tmRNA links to Rfam database...	0.67	0.65	0.68	62	64529	40	6	23	11	33
TMR_00164	tmRNA links to Rfam database...	0.40	0.40	0.40	42	66690	71	7	56	8	64
TMR_00165	tmRNA links to Rfam database...	0.30	0.32	0.29	31	61670	84	12	63	9	66
TMR_00166	tmRNA links to Rfam database...	0.34	0.33	0.35	33	61683	65	8	52	5	68
TMR_00168	tmRNA links to Rfam database...	0.80	0.79	0.80	90	60963	26	6	16	4	24
TMR_00173	tmRNA links to Rfam database...	0.31	0.36	0.28	15	42141	67	16	23	28	27
TMR_00179	tmRNA links to Rfam database...	0.53	0.55	0.51	54	67055	63	11	41	11	44
TMR_00180	tmRNA links to Rfam database...	0.57	0.58	0.56	57	67060	55	7	37	11	42
TMR_00182	tmRNA links to Rfam database...	0.19	0.20	0.18	20	66321	93	11	78	4	82
TMR_00183	tmRNA links to Rfam database...	0.20	0.20	0.20	21	63084	93	5	80	8	82
TMR_00184	tmRNA links to Rfam database...	0.39	0.40	0.39	41	63084	67	6	59	2	61
TMR_00193	tmRNA links to Rfam database...	0.43	0.44	0.42	35	59257	58	11	37	10	45
TMR_00194	tmRNA links to Rfam database...	0.48	0.48	0.47	45	62740	61	10	40	11	48
TMR_00196	tmRNA links to Rfam database...	0.31	0.31	0.30	30	60976	74	8	61	5	67
TMR_00199	tmRNA links to Rfam database...	0.55	0.58	0.52	53	62733	56	19	30	7	39
TMR_00200	-	0.56	0.56	0.56	42	41541	43	3	30	10	33
TMR_00204	tmRNA links to Rfam database...	0.40	0.40	0.40	39	60280	65	16	43	6	58
TMR_00207	tmRNA links to Rfam database...	0.36	0.35	0.36	36	72291	70	4	59	7	67
TMR_00223	tmRNA links to Rfam database...	0.09	0.09	0.09	9	64163	93	16	73	4	86
TMR_00224	tmRNA links to Rfam database...	0.33	0.34	0.33	34	64877	70	12	57	1	67
TMR_00226	tmRNA links to Rfam database...	0.30	0.32	0.28	34	69631	87	16	70	1	71
TMR_00227	tmRNA links to Rfam database...	0.27	0.29	0.26	29	70013	86	12	71	3	72
TMR_00228	tmRNA links to Rfam database...	0.29	0.31	0.27	34	88284	99	25	67	7	74
TMR_00234	tmRNA links to Rfam database...	0.26	0.27	0.25	28	58885	87	12	71	4	74
TMR_00238	tmRNA links to Rfam database...	0.15	0.17	0.14	17	84548	109	17	84	8	84
TMR_00239	tmRNA links to Rfam database...	0.46	0.48	0.45	46	61673	59	11	46	2	50
TMR_00240	tmRNA links to Rfam database...	0.21	0.24	0.20	20	63089	84	22	59	3	65
TMR_00246	-	0.69	0.68	0.70	23	78177	107	2	8	97	11
TMR_00248	tmRNA links to Rfam database...	0.12	0.16	0.10	6	54225	93	25	29	39	32
TMR_00257	tmRNA links to Rfam database...	0.25	0.24	0.26	24	67068	73	8	61	4	74
TMR_00259	tmRNA links to Rfam database...	0.60	0.60	0.60	62	67792	45	13	29	3	41
TMR_00261	tmRNA links to Rfam database...	0.53	0.54	0.51	55	66688	55	14	38	3	46
TMR_00262	tmRNA links to Rfam database...	0.50	0.53	0.48	55	74190	60	19	41	0	49
TMR_00271	tmRNA links to Rfam database...	0.49	0.48	0.49	44	64171	54	8	38	8	47
TMR_00274	tmRNA links to Rfam database...	0.30	0.30	0.29	32	66684	85	13	66	6	73
TMR_00278	tmRNA links to Rfam database...	0.44	0.45	0.42	46	67787	72	7	56	9	56
TMR_00279	tmRNA links to Rfam database...	0.52	0.52	0.51	49	68910	57	10	37	10	45
TMR_00280	tmRNA links to Rfam database...	0.48	0.50	0.47	50	65959	69	9	48	12	51
TMR_00283	tmRNA links to Rfam database...	0.54	0.54	0.54	52	65244	53	5	40	8	44
TMR_00289	tmRNA links to Rfam database...	0.60	0.61	0.58	60	67058	55	11	32	12	38
TMR_00290	tmRNA links to Rfam database...	0.19	0.21	0.19	19	64159	91	15	68	8	73
TMR_00296	tmRNA links to Rfam database...	0.25	0.27	0.24	26	68899	83	14	67	2	72
TMR_00298	tmRNA links to Rfam database...	0.43	0.46	0.40	46	68151	69	18	50	1	55
TMR_00300	tmRNA links to Rfam database...	0.53	0.54	0.53	60	70387	64	9	44	11	52
TMR_00301	tmRNA links to Rfam database...	0.31	0.33	0.30	32	82108	83	21	54	8	64
TMR_00302	tmRNA links to Rfam database...	0.25	0.28	0.22	26	77304	95	24	67	4	68
TMR_00305	tmRNA links to Rfam database...	0.69	0.66	0.73	67	60983	34	5	20	9	35
TMR_00306	tmRNA links to Rfam database...	0.33	0.32	0.33	34	64159	68	11	57	0	72
TMR_00310	tmRNA links to Rfam database...	0.65	0.65	0.65	64	63805	39	9	25	5	34
TMR_00317	tmRNA links to Rfam database...	0.54	0.56	0.53	57	68157	54	14	37	3	45
TMR_00331	tmRNA links to Rfam database...	0.51	0.56	0.46	46	66696	71	12	41	18	36
TMR_00332	tmRNA links to Rfam database...	0.39	0.38	0.40	38	67065	62	9	49	4	61
TMR_00334	tmRNA links to Rfam database...	0.25	0.25	0.25	25	66693	81	10	67	4	76
TMR_00337	tmRNA links to Rfam database...	0.57	0.56	0.59	67	82914	51	15	32	4	52
TMR_00340	tmRNA links to Rfam database...	0.47	0.48	0.46	39	64176	65	7	39	19	42
TMR_00341	tmRNA links to Rfam database...	0.18	0.20	0.17	18	63085	90	22	65	3	74
TMR_00343	tmRNA links to Rfam database...	0.31	0.30	0.32	32	64880	76	12	56	8	73
TMR_00345	tmRNA links to Rfam database...	0.52	0.52	0.53	54	63801	56	9	39	8	50
TMR_00346	tmRNA links to Rfam database...	0.49	0.52	0.46	49	64155	59	15	42	2	45
TMR_00348	tmRNA links to Rfam database...	0.07	0.07	0.07	7	77324	108	11	79	18	92
TMR_00352	tmRNA links to Rfam database...	0.51	0.55	0.47	41	95179	84	17	29	38	34
TMR_00353	tmRNA links to Rfam database...	0.43	0.43	0.44	45	84153	73	15	42	16	60
TMR_00357	tmRNA links to Rfam database...	0.40	0.41	0.39	38	82931	75	22	37	16	54
TMR_00358	tmRNA links to Rfam database...	0.25	0.25	0.24	25	74975	93	15	63	15	74
TMR_00361	-	0.35	0.42	0.30	30	93428	88	29	41	18	42
TMR_00366	tmRNA links to Rfam database...	0.28	0.28	0.29	28	67798	83	12	58	13	72
TMR_00372	tmRNA links to Rfam database...	0.60	0.61	0.58	59	70399	55	7	35	13	37
TMR_00374	tmRNA links to Rfam database...	0.26	0.28	0.24	26	81700	87	23	61	3	66
TMR_00375	tmRNA links to Rfam database...	0.39	0.42	0.37	41	73424	72	27	44	1	57
TMR_00376	tmRNA links to Rfam database...	0.53	0.56	0.51	53	74587	66	16	35	15	42
TMR_00378	tmRNA links to Rfam database...	0.29	0.30	0.28	29	67791	87	7	69	11	68
TMR_00383	tmRNA links to Rfam database...	0.18	0.19	0.17	19	66681	103	15	80	8	81
TMR_00384	tmRNA links to Rfam database...	0.32	0.31	0.32	34	65597	78	6	66	6	74
TMR_00393	tmRNA links to Rfam database...	0.57	0.62	0.52	33	53237	58	14	17	27	20
TMR_00395	tmRNA links to Rfam database...	0.61	0.57	0.66	62	64526	38	4	28	6	47
TMR_00398	tmRNA links to Rfam database...	0.67	0.65	0.69	69	65241	37	2	29	6	37
TMR_00399	tmRNA links to Rfam database...	0.16	0.17	0.15	16	64871	97	27	66	4	78
TMR_00404	tmRNA links to Rfam database...	0.28	0.30	0.26	28	67421	90	22	57	11	64
TMR_00408	tmRNA links to Rfam database...	0.61	0.64	0.58	56	65970	49	13	27	9	32
TMR_00409	tmRNA links to Rfam database...	0.67	0.76	0.59	35	68576	69	10	14	45	11
TMR_00411	tmRNA links to Rfam database...	0.55	0.56	0.54	49	60984	47	10	32	5	38
TMR_00415	tmRNA links to Rfam database...	0.36	0.36	0.36	36	67062	66	13	50	3	65
TMR_00419	tmRNA links to Rfam database...	0.41	0.41	0.42	45	81702	82	11	52	19	66
TMR_00422	tmRNA links to Rfam database...	0.52	0.54	0.50	50	67796	59	12	38	9	42
TMR_00423	tmRNA links to Rfam database...	0.11	0.14	0.10	10	63800	104	25	68	11	63
TMR_00427	tmRNA links to Rfam database...	0.31	0.31	0.31	30	67432	71	11	55	5	67
TMR_00429	tmRNA links to Rfam database...	0.41	0.40	0.42	44	74587	71	6	54	11	65
TMR_00430	tmRNA links to Rfam database...	0.37	0.38	0.36	41	82507	79	15	58	6	68
TMR_00431	tmRNA links to Rfam database...	0.67	0.67	0.66	37	51947	64	8	11	45	18
TMR_00432	tmRNA links to Rfam database...	0.48	0.51	0.46	53	79685	70	16	46	8	51
TMR_00433	tmRNA links to Rfam database...	0.45	0.48	0.42	51	80078	72	14	57	1	55
TMR_00439	tmRNA links to Rfam database...	0.38	0.40	0.36	40	68524	81	20	51	10	61
TMR_00441	tmRNA links to Rfam database...	0.14	0.16	0.13	13	62031	92	25	59	8	70
TMR_00443	tmRNA links to Rfam database...	0.45	0.45	0.46	47	67058	58	14	42	2	57
TMR_00448	tmRNA links to Rfam database...	0.45	0.46	0.45	42	62034	58	6	46	6	50
TMR_00451	tmRNA links to Rfam database...	0.17	0.19	0.16	17	63441	88	16	72	0	72
TMR_00457	tmRNA links to Rfam database...	0.59	0.59	0.59	60	78504	49	12	30	7	42
TMR_00458	tmRNA links to Rfam database...	0.20	0.20	0.20	19	63449	85	19	59	7	74
TMR_00460	tmRNA links to Rfam database...	0.54	0.54	0.54	57	79295	57	9	40	8	49
TMR_00465	tmRNA links to Rfam database...	0.24	0.26	0.22	24	64152	85	23	62	0	70
TMR_00469	tmRNA links to Rfam database...	0.40	0.41	0.38	41	64513	66	11	55	0	59
TMR_00472	tmRNA links to Rfam database...	0.36	0.38	0.35	37	64514	72	24	45	3	60
TMR_00478	tmRNA links to Rfam database...	0.43	0.45	0.42	45	71902	66	17	46	3	54
TMR_00498	tmRNA links to Rfam database...	0.52	0.54	0.51	53	68903	61	11	39	11	46
TMR_00499	tmRNA links to Rfam database...	0.20	0.21	0.19	21	64509	97	7	83	7	78
TMR_00501	tmRNA links to Rfam database...	0.30	0.30	0.30	28	62387	71	8	58	5	64
TMR_00502	tmRNA links to Rfam database...	0.35	0.38	0.32	35	75358	83	17	56	10	58
TMR_00503	tmRNA links to Rfam database...	0.39	0.37	0.41	41	67796	67	5	54	8	70
TMR_00519	tmRNA links to Rfam database...	0.14	0.15	0.13	14	63086	100	16	74	10	81
TMR_00520	tmRNA links to Rfam database...	0.36	0.37	0.35	37	63085	78	13	55	10	62
TMR_00522	tmRNA links to Rfam database...	0.36	0.36	0.36	35	63092	72	11	52	9	62
TMR_00528	tmRNA links to Rfam database...	0.13	0.13	0.12	13	63082	105	12	83	10	84
TMR_00540	tmRNA links to Rfam database...	0.45	0.45	0.46	47	73433	65	4	52	9	57
TMR_00541	tmRNA links to Rfam database...	0.49	0.49	0.50	51	61673	60	3	49	8	54
TMR_00544	tmRNA links to Rfam database...	0.57	0.57	0.57	62	89567	54	17	30	7	46
TMR_00547	tmRNA links to Rfam database...	0.51	0.50	0.52	50	65245	48	3	43	2	50
TMR_00553	tmRNA links to Rfam database...	0.31	0.31	0.32	25	48127	59	8	45	6	56
TMR_00559	tmRNA links to Rfam database...	0.41	0.40	0.42	40	62385	60	11	45	4	61
TMR_00560	tmRNA links to Rfam database...	0.41	0.42	0.41	41	60975	68	6	53	9	57
TMR_00562	tmRNA links to Rfam database...	0.12	0.13	0.11	13	72649	110	22	87	1	89
TMR_00563	tmRNA links to Rfam database...	0.37	0.39	0.35	40	75352	81	19	55	7	63
TMR_00566	tmRNA links to Rfam database...	0.53	0.52	0.54	52	60630	53	5	39	9	48
TMR_00568	tmRNA links to Rfam database...	0.59	0.59	0.60	58	60630	47	3	35	9	41
TMR_00570	tmRNA links to Rfam database...	0.42	0.43	0.42	42	60277	69	6	53	10	55
TMR_00571	tmRNA links to Rfam database...	0.59	0.60	0.58	59	60625	47	7	35	5	40
TMR_00576	tmRNA links to Rfam database...	0.57	0.57	0.57	58	60277	52	9	34	9	44
TMR_00579	tmRNA links to Rfam database...	0.27	0.31	0.24	28	80486	96	21	66	9	62
TMR_00580	tmRNA links to Rfam database...	0.32	0.31	0.32	31	60630	70	13	52	5	69
TMR_00581	tmRNA links to Rfam database...	0.34	0.36	0.32	35	62373	77	12	61	4	63
TMR_00584	tmRNA links to Rfam database...	0.40	0.42	0.38	41	60967	72	8	59	5	56
TMR_00586	tmRNA links to Rfam database...	0.23	0.25	0.22	24	60964	88	18	69	1	73
TMR_00587	tmRNA links to Rfam database...	0.78	0.76	0.80	76	61330	24	4	15	5	24
TMR_00588	tmRNA links to Rfam database...	0.21	0.22	0.21	22	77314	94	20	65	9	79
TMR_00594	tmRNA links to Rfam database...	0.22	0.22	0.22	23	79295	88	14	69	5	81
TMR_00596	tmRNA links to Rfam database...	0.27	0.29	0.25	28	78099	91	19	64	8	67
TMR_00599	tmRNA links to Rfam database...	0.15	0.18	0.13	13	63088	99	35	54	10	59
TMR_00600	tmRNA links to Rfam database...	0.18	0.18	0.18	21	79686	95	18	75	2	94
TMR_00601	tmRNA links to Rfam database...	0.56	0.57	0.55	24	58952	77	2	18	57	18
TMR_00603	tmRNA links to Rfam database...	0.64	0.65	0.64	28	60334	76	7	9	60	15
TMR_00604	tmRNA links to Rfam database...	0.72	0.72	0.72	81	62722	32	10	22	0	31
TMR_00605	tmRNA links to Rfam database...	0.50	0.50	0.50	54	74196	56	20	35	1	54
TMR_00606	tmRNA links to Rfam database...	0.44	0.46	0.42	49	68890	72	8	59	5	58
TMR_00609	tmRNA links to Rfam database...	0.69	0.70	0.68	79	63430	40	6	31	3	34
TMR_00610	tmRNA links to Rfam database...	0.61	0.62	0.62	64	62024	52	7	33	12	40
TMR_00611	tmRNA links to Rfam database...	0.43	0.45	0.41	46	61314	65	16	49	0	56
TMR_00612	tmRNA links to Rfam database...	0.40	0.41	0.40	43	60618	68	9	56	3	61
TMR_00614	tmRNA links to Rfam database...	0.30	0.30	0.31	31	60975	75	8	61	6	73
TMR_00615	tmRNA links to Rfam database...	0.37	0.38	0.37	36	63805	72	14	48	10	60
TMR_00616	tmRNA links to Rfam database...	0.37	0.37	0.36	37	67058	71	18	48	5	62
TMR_00617	tmRNA links to Rfam database...	0.38	0.41	0.35	24	34647	55	13	32	10	34
TMR_00623	tmRNA links to Rfam database...	0.50	0.50	0.51	54	61319	56	2	50	4	54
TMR_00624	tmRNA links to Rfam database...	0.54	0.54	0.54	58	62374	61	5	44	12	50
TMR_00625	tmRNA links to Rfam database...	0.21	0.22	0.20	23	78889	95	28	63	4	83
TMR_00626	tmRNA links to Rfam database...	0.37	0.39	0.35	42	67777	81	15	62	4	67
TMR_00680	tmRNA links to Rfam database...	0.20	0.21	0.19	21	67788	91	20	67	4	78
TMR_00681	tmRNA links to Rfam database...	0.43	0.42	0.43	41	65971	64	7	47	10	56
TMR_00683	tmRNA links to Rfam database...	0.33	0.35	0.32	35	82917	79	17	59	3	65
TMR_00686	tmRNA links to Rfam database...	0.45	0.45	0.44	49	71142	74	14	48	12	59
TMR_00687	tmRNA links to Rfam database...	0.35	0.35	0.35	39	71521	81	6	65	10	72
TMR_00696	tmRNA links to Rfam database...	0.12	0.12	0.11	14	84955	125	19	90	16	100
TMR_00698	tmRNA links to Rfam database...	0.37	0.39	0.35	41	63074	75	21	54	0	63
TMR_00699	tmRNA links to Rfam database...	0.41	0.41	0.41	42	67059	63	10	50	3	60
TMR_00702	tmRNA links to Rfam database...	0.28	0.29	0.28	29	67057	80	18	57	5	71
TMR_00703	tmRNA links to Rfam database...	0.31	0.31	0.31	31	67427	74	16	54	4	68
TMR_00706	tmRNA links to Rfam database...	0.53	0.52	0.53	54	66328	52	6	42	4	49
TMR_00711	tmRNA links to Rfam database...	0.55	0.55	0.56	54	67799	50	13	30	7	44
TMR_00712	tmRNA links to Rfam database...	0.40	0.41	0.39	45	78490	73	19	52	2	64
TMR_00716	tmRNA links to Rfam database...	0.18	0.19	0.17	19	62725	91	17	74	0	81

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Contrafold - scored higher in this pairwise comparison

1. Total counts & total scores for Contrafold

2. Individual counts for Contrafold [ download as .csv ]

Performance of PknotsRG - scored lower in this pairwise comparison

1. Total counts & total scores for PknotsRG

2. Individual counts for PknotsRG [ download as .csv ]