CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	MXScarna(20)		Contrafold
MCC	0.626	>	0.601
Average MCC ± 95% Confidence Intervals	0.626 ± 0.017	>	0.600 ± 0.020
Sensitivity	0.551	<	0.576
Positive Predictive Value	0.712	>	0.628
Total TP	11808	<	12335
Total TN	12417413	>	12414368
Total FP	5988	<	8481
Total FP CONTRA	910	<	1069
Total FP INCONS	3875	<	6234
Total FP COMP	1203	>	1178
Total FN	9607	>	9080
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of MXScarna(20) and Contrafold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for MXScarna(20) and Contrafold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for MXScarna(20) and Contrafold).
Comparison of average Matthews Correlation Coefficients (MCCs) for MXScarna(20) and Contrafold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for MXScarna(20) and Contrafold).

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Performance of MXScarna(20) - scored higher in this pairwise comparison

1. Total counts & total scores for MXScarna(20)

Total Base Pair Counts
Total TP	11808
Total TN	12417413
Total FP	5988
Total FP CONTRA	910
Total FP INCONS	3875
Total FP COMP	1203
Total FN	9607

Total Scores
MCC	0.626
Average MCC ± 95% Confidence Intervals	0.626 ± 0.017
Sensitivity	0.551
Positive Predictive Value	0.712
Nr of predictions	204

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2. Individual counts for MXScarna(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.80	59	47821	19	2	13	4	38
ASE_00005	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	75	57889	11	1	5	5	42
ASE_00006	RNaseP_bact_a links to Rfam database...	0.52	0.47	0.58	44	47510	34	6	26	2	49
ASE_00007	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.77	73	59590	26	2	20	4	37
ASE_00012	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.84	81	73824	18	2	13	3	42
ASE_00018	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.78	86	80491	29	1	23	5	48
ASE_00020	RNaseP_bact_a links to Rfam database...	0.58	0.46	0.74	58	73842	24	3	17	4	68
ASE_00021	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	101	104081	17	2	12	3	59
ASE_00022	RNaseP_bact_b links to Rfam database...	0.73	0.66	0.80	82	82925	28	5	16	7	42
ASE_00028	RNaseP_bact_b links to Rfam database...	0.78	0.70	0.87	88	84565	21	4	9	8	38
ASE_00035	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.69	67	70403	38	1	29	8	51
ASE_00037	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	77	59250	18	0	13	5	33
ASE_00038	RNaseP_bact_a links to Rfam database...	0.52	0.45	0.62	45	53555	32	3	25	4	56
ASE_00040	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.70	73	78899	38	3	28	7	60
ASE_00041	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.86	68	57551	17	1	10	6	40
ASE_00042	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.86	102	89982	21	3	13	5	43
ASE_00044	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	79	54527	13	4	5	4	26
ASE_00064	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	53	45387	22	1	10	11	36
ASE_00068	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.91	58	37611	11	2	4	5	27
ASE_00074	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	75	67805	21	1	15	5	44
ASE_00075	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.77	76	108712	26	4	19	3	86
ASE_00077	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	60	45073	22	3	14	5	26
ASE_00078	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.86	57	43005	17	2	7	8	26
ASE_00080	RNaseP_bact_a links to Rfam database...	0.40	0.33	0.48	40	71548	48	5	38	5	83
ASE_00081	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.82	65	49691	24	1	13	10	32
ASE_00082	RNaseP_bact_a links to Rfam database...	0.41	0.34	0.51	39	70424	44	4	33	7	77
ASE_00083	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.81	74	62390	24	2	15	7	36
ASE_00084	RNaseP_bact_a links to Rfam database...	0.60	0.49	0.72	49	53560	28	2	17	9	50
ASE_00087	RNaseP_bact_a links to Rfam database...	0.42	0.31	0.59	44	88335	37	2	29	6	100
ASE_00090	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.68	50	55538	27	1	22	4	51
ASE_00092	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.74	59	63466	28	6	15	7	54
ASE_00099	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	82	64517	24	2	19	3	38
ASE_00104	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.81	79	64164	25	1	17	7	40
ASE_00105	RNaseP_bact_a links to Rfam database...	0.55	0.48	0.64	53	64178	35	0	30	5	58
ASE_00107	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.72	76	73047	36	1	29	6	51
ASE_00115	RNaseP_bact_a links to Rfam database...	0.36	0.28	0.46	28	54554	38	2	31	5	73
ASE_00118	RNaseP_bact_a links to Rfam database...	0.51	0.40	0.64	41	60662	33	1	22	10	61
ASE_00119	RNaseP_bact_a links to Rfam database...	0.32	0.23	0.44	25	62778	34	0	32	2	83
ASE_00123	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.68	30	38459	16	3	11	2	55
ASE_00125	RNaseP_bact_a links to Rfam database...	0.61	0.43	0.86	38	39296	11	0	6	5	50
ASE_00126	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	67	40395	15	2	6	7	15
ASE_00128	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.86	56	53236	14	2	7	5	44
ASE_00129	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.74	70	62740	28	3	22	3	41
ASE_00131	RNaseP_bact_a links to Rfam database...	0.60	0.46	0.78	39	39290	20	1	10	9	46
ASE_00134	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.70	49	50333	29	1	20	8	46
ASE_00135	RNaseP_bact_a links to Rfam database...	0.44	0.35	0.56	38	63122	41	1	29	11	71
ASE_00136	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	57	48132	24	1	15	8	35
ASE_00137	RNaseP_bact_a links to Rfam database...	0.65	0.57	0.75	56	48441	23	3	16	4	42
ASE_00138	RNaseP_bact_a links to Rfam database...	0.67	0.60	0.74	49	40404	27	1	16	10	32
ASE_00140	RNaseP_bact_a links to Rfam database...	0.53	0.41	0.68	51	70801	28	4	20	4	74
ASE_00142	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.88	90	67059	16	3	9	4	32
ASE_00146	RNaseP_bact_a links to Rfam database...	0.61	0.51	0.74	63	70791	29	1	21	7	61
ASE_00153	RNaseP_nuc links to Rfam database...	0.52	0.45	0.60	33	57575	51	2	20	29	40
ASE_00163	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	57	53232	17	3	9	5	36
ASE_00165	RNaseP_bact_a links to Rfam database...	0.53	0.45	0.64	45	52905	29	3	22	4	56
ASE_00170	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	47	48749	35	5	27	3	46
ASE_00171	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.51	39	48439	42	1	37	4	55
ASE_00172	RNaseP_bact_a links to Rfam database...	0.71	0.58	0.87	61	58926	15	2	7	6	45
ASE_00174	RNaseP_bact_a links to Rfam database...	0.42	0.34	0.53	37	61005	39	3	30	6	72
ASE_00175	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	64	59949	26	3	15	8	43
ASE_00179	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.83	58	44183	18	4	8	6	26
ASE_00180	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	64	51282	20	3	11	6	36
ASE_00181	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.79	61	57553	24	6	10	8	45
ASE_00182	RNaseP_bact_a links to Rfam database...	0.42	0.32	0.57	43	84179	38	2	31	5	93
ASE_00183	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.79	65	61343	24	0	17	7	48
ASE_00184	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.79	57	54543	17	4	11	2	45
ASE_00185	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.69	47	73468	24	3	18	3	81
ASE_00186	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.84	90	78896	20	1	16	3	42
ASE_00190	RNaseP_bact_b links to Rfam database...	0.52	0.42	0.64	38	45392	24	5	16	3	52
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.79	84	89146	27	2	21	4	61
ASE_00198	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.81	70	52564	20	4	12	4	32
ASE_00203	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	58	46594	17	3	10	4	38
ASE_00212	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.85	100	93844	23	3	14	6	48
ASE_00214	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	73	56195	16	4	8	4	30
ASE_00215	RNaseP_bact_a links to Rfam database...	0.24	0.19	0.30	19	48453	48	6	38	4	80
ASE_00216	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.91	62	39272	13	1	5	7	20
ASE_00217	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	53	40393	31	1	23	7	37
ASE_00221	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	69	64520	34	1	30	3	48
ASE_00228	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.75	55	46898	26	4	14	8	31
ASE_00229	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.88	61	42417	14	3	5	6	26
ASE_00231	RNaseP_bact_a links to Rfam database...	0.57	0.46	0.70	44	47832	24	1	18	5	52
ASE_00232	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.92	61	38437	10	3	2	5	23
ASE_00234	RNaseP_bact_a links to Rfam database...	0.59	0.47	0.73	61	75383	27	3	19	5	68
ASE_00238	RNaseP_bact_a links to Rfam database...	0.61	0.49	0.77	56	64188	22	4	13	5	58
ASE_00241	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.91	60	43890	12	1	5	6	27
ASE_00242	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.76	75	60976	31	1	23	7	37
ASE_00248	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	78	62383	26	1	19	6	36
ASE_00254	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.87	53	36795	12	4	4	4	29
ASE_00255	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	77	74583	34	3	28	3	53
ASE_00257	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.70	50	50969	30	3	18	9	47
ASE_00263	RNaseP_bact_a links to Rfam database...	0.54	0.43	0.68	52	70424	27	4	20	3	68
ASE_00267	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.84	59	45080	20	1	10	9	29
ASE_00270	RNaseP_bact_a links to Rfam database...	0.43	0.30	0.61	38	72328	27	1	23	3	90
ASE_00274	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.85	52	55550	14	2	7	5	51
ASE_00277	RNaseP_bact_a links to Rfam database...	0.73	0.56	0.96	51	48152	6	0	2	4	40
ASE_00279	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	72	53217	19	3	9	7	29
ASE_00280	RNaseP_bact_a links to Rfam database...	0.64	0.57	0.72	56	51925	32	1	21	10	42
ASE_00281	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.89	65	44478	16	3	5	8	23
ASE_00282	RNaseP_bact_a links to Rfam database...	0.51	0.44	0.59	56	77720	43	3	36	4	71
ASE_00283	RNaseP_bact_a links to Rfam database...	0.61	0.51	0.73	55	61701	25	3	17	5	52
ASE_00284	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.81	57	58241	15	2	11	2	51
ASE_00285	RNaseP_bact_a links to Rfam database...	0.58	0.48	0.70	58	68923	28	4	21	3	64
ASE_00286	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.70	52	46591	31	1	21	9	40
ASE_00287	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.79	66	54862	25	3	15	7	37
ASE_00292	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.73	82	81697	39	2	29	8	56
ASE_00294	RNaseP_bact_a links to Rfam database...	0.68	0.59	0.79	101	114353	34	1	26	7	70
ASE_00296	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	79	91700	32	5	22	5	66
ASE_00297	RNaseP_bact_a links to Rfam database...	0.57	0.49	0.66	48	52902	30	3	22	5	50
ASE_00298	RNaseP_bact_a links to Rfam database...	0.46	0.40	0.54	45	67445	43	7	31	5	68
ASE_00318	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.84	81	80103	31	6	10	15	37
ASE_00328	RNaseP_bact_b links to Rfam database...	0.71	0.66	0.77	74	72675	33	5	17	11	38
ASE_00332	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.89	102	81695	17	4	9	4	36
ASE_00335	RNaseP_bact_b links to Rfam database...	0.69	0.63	0.76	73	75370	33	5	18	10	43
ASE_00340	RNaseP_bact_a links to Rfam database...	0.54	0.47	0.62	40	45991	32	4	21	7	45
ASE_00342	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.88	86	62383	19	1	11	7	29
ASE_00353	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	58	57893	25	2	17	6	49
ASE_00361	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.78	52	75399	19	1	14	4	75
ASE_00362	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.82	56	48137	18	3	9	6	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.82	54	51294	22	2	10	10	40
ASE_00364	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.76	61	54205	25	3	16	6	44
ASE_00366	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.65	48	58579	29	4	22	3	50
ASE_00367	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.81	60	42997	20	3	11	6	26
ASE_00369	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.66	54	55863	33	1	27	5	53
ASE_00370	RNaseP_bact_a links to Rfam database...	0.87	0.82	0.92	69	41830	14	0	6	8	15
ASE_00372	RNaseP_bact_a links to Rfam database...	0.48	0.41	0.55	41	51929	36	4	29	3	59
ASE_00374	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	55	44783	15	2	10	3	33
ASE_00376	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	54	56863	38	3	33	2	51
ASE_00377	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.88	74	57546	13	4	6	3	33
ASE_00379	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.76	61	45976	22	3	16	3	28
ASE_00382	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.73	52	41834	29	1	18	10	32
ASE_00383	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	75	54530	17	2	8	7	30
ASE_00384	RNaseP_bact_a links to Rfam database...	0.61	0.53	0.71	49	48447	24	2	18	4	43
ASE_00386	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.80	60	50328	22	1	14	7	36
ASE_00387	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.71	57	55865	27	6	17	4	47
ASE_00388	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	50	45689	20	1	13	6	39
ASE_00390	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.87	58	42128	15	2	7	6	27
ASE_00393	RNaseP_bact_a links to Rfam database...	0.68	0.59	0.77	55	47824	21	1	15	5	38
ASE_00394	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	58	46901	19	4	8	7	35
ASE_00395	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.86	54	41553	20	1	8	11	30
ASE_00396	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.80	52	41551	19	4	9	6	31
ASE_00397	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.91	74	54534	12	0	7	5	31
ASE_00398	RNaseP_bact_a links to Rfam database...	0.51	0.43	0.61	45	55871	38	1	28	9	59
ASE_00400	RNaseP_bact_a links to Rfam database...	0.51	0.42	0.61	45	57896	33	3	26	4	61
ASE_00401	RNaseP_bact_a links to Rfam database...	0.50	0.40	0.62	51	76946	36	4	27	5	75
ASE_00402	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.74	50	42418	21	1	17	3	35
ASE_00403	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	65	55867	19	3	10	6	42
ASE_00404	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.90	60	43004	10	0	7	3	25
ASE_00406	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.76	53	48758	26	1	16	9	41
ASE_00411	RNaseP_bact_a links to Rfam database...	0.54	0.46	0.63	41	49390	27	2	22	3	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.70	52	58237	28	2	20	6	53
ASE_00413	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.69	49	44480	29	5	17	7	32
ASE_00415	RNaseP_bact_a links to Rfam database...	0.42	0.35	0.51	36	54876	37	1	33	3	67
ASE_00416	RNaseP_bact_a links to Rfam database...	0.59	0.51	0.68	65	77325	36	6	25	5	62
ASE_00419	RNaseP_bact_a links to Rfam database...	0.59	0.49	0.71	50	54876	23	1	19	3	53
ASE_00422	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	59	46903	14	2	7	5	35
ASE_00423	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	84	56859	16	3	7	6	25
ASE_00428	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.70	73	76532	38	6	25	7	52
ASE_00430	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.81	57	46901	18	2	11	5	40
ASE_00437	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.69	68	79302	35	0	31	4	67
ASE_00441	RNaseP_bact_a links to Rfam database...	0.44	0.34	0.58	38	64196	33	1	26	6	74
ASE_00448	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.71	65	64169	33	1	26	6	47
ASE_00451	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	87	70778	16	3	8	5	38
RFA_00599	Telomerase-vert links to Rfam database...	0.55	0.52	0.58	58	101375	62	5	37	20	53
RFA_00601	Telomerase-vert links to Rfam database...	0.81	0.80	0.81	91	99123	42	5	16	21	23
RFA_00602	Telomerase-vert links to Rfam database...	0.72	0.72	0.73	83	101361	51	6	25	20	33
TMR_00017	tmRNA links to Rfam database...	0.55	0.52	0.59	53	67071	42	16	21	5	49
TMR_00018	tmRNA links to Rfam database...	0.48	0.48	0.49	44	64530	48	21	25	2	48
TMR_00038	tmRNA links to Rfam database...	0.70	0.62	0.80	68	71168	24	8	9	7	42
TMR_00042	tmRNA links to Rfam database...	0.56	0.55	0.56	54	62739	48	11	31	6	44
TMR_00046	tmRNA links to Rfam database...	0.56	0.55	0.57	53	62742	46	5	35	6	43
TMR_00048	tmRNA links to Rfam database...	0.53	0.52	0.55	49	64891	48	7	33	8	46
TMR_00080	tmRNA links to Rfam database...	0.49	0.50	0.48	48	70399	54	25	28	1	48
TMR_00082	tmRNA links to Rfam database...	0.44	0.44	0.45	42	67803	53	17	34	2	54
TMR_00123	tmRNA links to Rfam database...	0.66	0.53	0.81	54	66363	23	2	11	10	47
TMR_00137	tmRNA links to Rfam database...	0.37	0.36	0.39	32	60992	53	18	33	2	57
TMR_00142	tmRNA links to Rfam database...	0.51	0.50	0.52	51	70778	53	14	33	6	51
TMR_00207	tmRNA links to Rfam database...	0.49	0.49	0.49	50	72288	54	16	36	2	53
TMR_00257	tmRNA links to Rfam database...	0.54	0.49	0.59	48	67080	38	10	23	5	50
TMR_00271	tmRNA links to Rfam database...	0.43	0.37	0.49	34	64192	38	11	24	3	57
TMR_00332	tmRNA links to Rfam database...	0.53	0.51	0.55	50	67070	43	15	26	2	49
TMR_00366	tmRNA links to Rfam database...	0.60	0.56	0.65	56	67810	43	8	22	13	44
TMR_00378	tmRNA links to Rfam database...	0.65	0.60	0.70	58	67813	36	10	15	11	39
TMR_00399	tmRNA links to Rfam database...	0.38	0.35	0.40	33	64898	53	16	33	4	61
TMR_00404	tmRNA links to Rfam database...	0.48	0.47	0.49	43	67441	54	14	30	10	49
TMR_00427	tmRNA links to Rfam database...	0.56	0.52	0.60	50	67445	36	15	18	3	47
TMR_00443	tmRNA links to Rfam database...	0.59	0.55	0.63	57	67070	36	15	19	2	47
TMR_00451	tmRNA links to Rfam database...	0.34	0.34	0.34	30	63459	58	21	36	1	59
TMR_00458	tmRNA links to Rfam database...	0.39	0.38	0.41	35	63460	51	20	31	0	58
TMR_00469	tmRNA links to Rfam database...	0.62	0.60	0.65	60	64527	38	14	19	5	40
TMR_00472	tmRNA links to Rfam database...	0.56	0.47	0.67	46	64551	34	12	11	11	51
TMR_00519	tmRNA links to Rfam database...	0.38	0.40	0.37	38	63086	68	19	47	2	57
TMR_00520	tmRNA links to Rfam database...	0.43	0.41	0.46	41	63100	51	12	37	2	58
TMR_00522	tmRNA links to Rfam database...	0.46	0.44	0.49	43	63102	45	17	28	0	54
TMR_00528	tmRNA links to Rfam database...	0.39	0.40	0.38	39	63088	65	19	44	2	58
TMR_00540	tmRNA links to Rfam database...	0.48	0.48	0.48	50	73431	56	17	38	1	54
TMR_00568	tmRNA links to Rfam database...	0.57	0.53	0.61	52	60641	45	4	29	12	47
TMR_00571	tmRNA links to Rfam database...	0.60	0.56	0.65	55	60641	42	5	25	12	44
TMR_00580	tmRNA links to Rfam database...	0.60	0.52	0.69	52	60651	33	3	20	10	48
TMR_00584	tmRNA links to Rfam database...	0.61	0.57	0.66	55	60992	39	5	23	11	42
TMR_00586	tmRNA links to Rfam database...	0.58	0.55	0.62	53	60989	42	6	27	9	44
TMR_00616	tmRNA links to Rfam database...	0.58	0.47	0.71	47	67095	24	9	10	5	52
TMR_00699	tmRNA links to Rfam database...	0.55	0.50	0.60	51	67076	37	10	24	3	51
TMR_00702	tmRNA links to Rfam database...	0.52	0.50	0.55	50	67070	43	14	27	2	50
TMR_00703	tmRNA links to Rfam database...	0.54	0.49	0.58	49	67444	39	13	22	4	50

^top

Performance of Contrafold - scored lower in this pairwise comparison

1. Total counts & total scores for Contrafold

Total Base Pair Counts
Total TP	12335
Total TN	12414368
Total FP	8481
Total FP CONTRA	1069
Total FP INCONS	6234
Total FP COMP	1178
Total FN	9080

Total Scores
MCC	0.601
Average MCC ± 95% Confidence Intervals	0.600 ± 0.020
Sensitivity	0.576
Positive Predictive Value	0.628
Nr of predictions	204

^top

2. Individual counts for Contrafold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	66	47803	28	5	21	2	31
ASE_00005	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	65	57876	30	0	29	1	52
ASE_00006	RNaseP_bact_a links to Rfam database...	0.52	0.52	0.53	48	47495	47	7	36	4	45
ASE_00007	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.57	54	59591	45	1	39	5	56
ASE_00012	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	61	73815	53	2	42	9	62
ASE_00018	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.66	79	80481	42	2	39	1	55
ASE_00020	RNaseP_bact_a links to Rfam database...	0.68	0.62	0.74	78	73815	31	1	26	4	48
ASE_00021	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.69	97	104056	50	3	40	7	63
ASE_00022	RNaseP_bact_b links to Rfam database...	0.33	0.31	0.35	39	82918	77	2	69	6	85
ASE_00028	RNaseP_bact_b links to Rfam database...	0.69	0.66	0.72	83	84551	44	4	28	12	43
ASE_00035	RNaseP_bact_a links to Rfam database...	0.40	0.36	0.43	43	70401	62	4	52	6	75
ASE_00037	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.69	58	59256	28	1	25	2	52
ASE_00038	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	51	53540	41	6	31	4	50
ASE_00040	RNaseP_bact_a links to Rfam database...	0.14	0.14	0.15	19	78875	114	8	101	5	114
ASE_00041	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.73	66	57539	29	2	23	4	42
ASE_00042	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	79	89969	57	2	50	5	66
ASE_00044	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	70	54513	37	5	27	5	35
ASE_00064	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	50	45374	37	2	25	10	39
ASE_00068	RNaseP_bact_a links to Rfam database...	0.69	0.61	0.79	52	37609	14	1	13	0	33
ASE_00074	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	58	67781	59	7	50	2	61
ASE_00075	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.80	111	108673	34	3	24	7	51
ASE_00077	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.78	58	45076	22	3	13	6	28
ASE_00078	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.81	55	43003	20	0	13	7	28
ASE_00080	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	70	71517	49	6	38	5	53
ASE_00081	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	56	49682	34	5	27	2	41
ASE_00082	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	83	70405	24	1	11	12	33
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	78	62385	25	0	18	7	32
ASE_00084	RNaseP_bact_a links to Rfam database...	0.74	0.73	0.76	72	53533	30	2	21	7	27
ASE_00087	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.76	103	88275	33	4	28	1	41
ASE_00090	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.66	68	55508	43	4	31	8	33
ASE_00092	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.85	90	63440	23	6	10	7	23
ASE_00099	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	61	64510	51	5	44	2	59
ASE_00104	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.73	82	64148	33	4	27	2	37
ASE_00105	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.57	55	64165	49	7	34	8	56
ASE_00107	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	86	73030	38	4	33	1	41
ASE_00115	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.69	70	54513	40	6	26	8	31
ASE_00118	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	63	60631	35	4	28	3	39
ASE_00119	RNaseP_bact_a links to Rfam database...	0.73	0.72	0.74	78	62729	31	3	25	3	30
ASE_00123	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	46	38427	34	4	26	4	39
ASE_00125	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	62	39264	22	3	11	8	26
ASE_00126	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.64	48	40395	34	2	25	7	34
ASE_00128	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.88	72	53219	16	1	9	6	28
ASE_00129	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	73	62737	30	1	24	5	38
ASE_00131	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.79	55	39270	25	1	14	10	30
ASE_00134	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.46	39	50318	50	3	43	4	56
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.69	62	63100	35	1	27	7	47
ASE_00136	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.66	50	48129	37	1	25	11	42
ASE_00137	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	74	48426	20	4	12	4	24
ASE_00138	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.63	45	40399	27	7	19	1	36
ASE_00140	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.83	88	70770	19	3	15	1	37
ASE_00142	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.62	72	67045	50	5	39	6	50
ASE_00146	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.53	60	70762	55	7	47	1	64
ASE_00153	RNaseP_nuc links to Rfam database...	0.41	0.42	0.40	31	57553	80	7	39	34	42
ASE_00163	RNaseP_bact_a links to Rfam database...	0.34	0.32	0.37	30	53219	62	4	48	10	63
ASE_00165	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.77	67	52888	21	4	16	1	34
ASE_00170	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.70	57	48746	26	4	21	1	36
ASE_00171	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.77	67	48429	24	5	15	4	27
ASE_00172	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.88	82	58903	15	2	9	4	24
ASE_00174	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	63	60979	34	7	26	1	46
ASE_00175	RNaseP_bact_a links to Rfam database...	0.35	0.34	0.36	36	59932	73	3	60	10	71
ASE_00179	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.81	58	44181	21	3	11	7	26
ASE_00180	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.85	71	51276	18	4	9	5	29
ASE_00181	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	45	57532	55	5	48	2	61
ASE_00182	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	86	84132	38	2	35	1	50
ASE_00183	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.72	79	61315	40	2	29	9	34
ASE_00184	RNaseP_bact_a links to Rfam database...	0.76	0.77	0.75	79	54509	30	5	22	3	23
ASE_00185	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.80	88	73426	28	2	20	6	40
ASE_00186	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.79	95	78882	35	3	23	9	37
ASE_00190	RNaseP_bact_b links to Rfam database...	0.53	0.46	0.61	41	45384	33	3	23	7	49
ASE_00197	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.66	85	89125	49	3	40	6	60
ASE_00198	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.73	70	52554	30	4	22	4	32
ASE_00203	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.82	71	46578	22	4	12	6	25
ASE_00212	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.71	95	93828	46	3	35	8	53
ASE_00214	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.82	80	56183	27	3	14	10	23
ASE_00215	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	50	48429	39	4	33	2	49
ASE_00216	RNaseP_bact_a links to Rfam database...	0.58	0.59	0.58	48	39257	36	9	26	1	34
ASE_00217	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	35	40394	47	2	39	6	55
ASE_00221	RNaseP_bact_a links to Rfam database...	0.66	0.60	0.72	70	64523	31	1	26	4	47
ASE_00228	RNaseP_bact_a links to Rfam database...	0.79	0.78	0.80	67	46887	20	8	9	3	19
ASE_00229	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	56	42407	28	4	19	5	31
ASE_00231	RNaseP_bact_a links to Rfam database...	0.77	0.75	0.79	72	47804	20	3	16	1	24
ASE_00232	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.64	54	38418	33	10	21	2	30
ASE_00234	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.60	64	75360	47	3	39	5	65
ASE_00238	RNaseP_bact_a links to Rfam database...	0.68	0.62	0.75	71	64166	26	1	23	2	43
ASE_00241	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.85	64	43881	17	2	9	6	23
ASE_00242	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.79	81	60973	24	6	15	3	31
ASE_00248	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.67	66	62383	36	1	31	4	48
ASE_00254	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.81	60	36782	20	5	9	6	22
ASE_00255	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.67	80	74571	46	4	36	6	50
ASE_00257	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	72	50951	21	2	15	4	25
ASE_00263	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	67	70383	50	4	46	0	53
ASE_00267	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.52	41	45071	44	3	35	6	47
ASE_00270	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.75	89	72271	33	3	27	3	39
ASE_00274	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.51	48	55516	49	6	41	2	55
ASE_00277	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	54	48119	35	5	27	3	37
ASE_00279	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	52	53202	48	8	39	1	49
ASE_00280	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	57	51914	35	4	28	3	41
ASE_00281	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.75	57	44475	26	1	18	7	31
ASE_00282	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	60	77698	59	9	48	2	67
ASE_00283	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	67	61674	41	4	31	6	40
ASE_00284	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	68	58209	40	6	28	6	40
ASE_00285	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	96	68896	23	3	11	9	26
ASE_00286	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	64	46582	24	1	18	5	28
ASE_00287	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	67	54853	32	3	23	6	36
ASE_00292	RNaseP_bact_a links to Rfam database...	0.59	0.53	0.66	73	81699	43	2	36	5	65
ASE_00294	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	116	114333	36	3	29	4	55
ASE_00296	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	78	91670	61	5	53	3	67
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.68	66	52878	37	5	26	6	32
ASE_00298	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	31	67422	79	7	68	4	82
ASE_00318	RNaseP_bact_b links to Rfam database...	0.63	0.60	0.66	71	80093	40	12	24	4	47
ASE_00328	RNaseP_bact_b links to Rfam database...	0.63	0.59	0.67	66	72673	41	5	27	9	46
ASE_00332	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	76	81678	60	2	54	4	62
ASE_00335	RNaseP_bact_b links to Rfam database...	0.62	0.57	0.68	66	75369	44	2	29	13	50
ASE_00340	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	38	45978	44	4	36	4	47
ASE_00342	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.70	74	62376	33	4	27	2	41
ASE_00353	RNaseP_bact_a links to Rfam database...	0.77	0.75	0.78	80	57868	29	1	21	7	27
ASE_00361	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.67	77	75351	42	8	30	4	50
ASE_00362	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.60	54	48115	38	2	34	2	37
ASE_00363	RNaseP_bact_a links to Rfam database...	0.78	0.77	0.80	72	51270	25	1	17	7	22
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.77	75	54187	33	3	20	10	30
ASE_00366	RNaseP_bact_a links to Rfam database...	0.37	0.38	0.36	37	58550	68	7	59	2	61
ASE_00367	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.50	43	42985	49	8	35	6	43
ASE_00369	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.78	77	55846	28	1	21	6	30
ASE_00370	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.62	53	41820	35	4	28	3	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	68	51908	33	4	23	6	32
ASE_00374	RNaseP_bact_a links to Rfam database...	0.74	0.73	0.74	64	44764	23	5	17	1	24
ASE_00376	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.63	63	56853	41	4	33	4	42
ASE_00377	RNaseP_bact_a links to Rfam database...	0.77	0.76	0.78	81	57526	29	4	19	6	26
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	52	45973	39	4	27	8	37
ASE_00382	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.59	47	41826	36	6	26	4	37
ASE_00383	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.75	76	54514	32	3	22	7	29
ASE_00384	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	70	48428	22	2	16	4	22
ASE_00386	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	63	50310	36	1	29	6	33
ASE_00387	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	68	55852	27	1	24	2	36
ASE_00388	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	60	45676	22	1	16	5	29
ASE_00390	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.67	54	42114	37	3	24	10	31
ASE_00393	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.77	63	47813	26	2	17	7	30
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.80	0.81	74	46880	20	4	13	3	19
ASE_00395	RNaseP_bact_a links to Rfam database...	0.68	0.68	0.69	57	41533	29	5	21	3	27
ASE_00396	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	45	41538	34	2	31	1	38
ASE_00397	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.65	67	54512	41	6	30	5	38
ASE_00398	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.74	65	55857	30	1	22	7	39
ASE_00400	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	67	57874	31	1	28	2	39
ASE_00401	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.64	79	76904	46	7	38	1	47
ASE_00402	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	63	42410	18	1	12	5	22
ASE_00403	RNaseP_bact_a links to Rfam database...	0.39	0.36	0.41	39	55850	61	3	53	5	68
ASE_00404	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	45	42989	38	2	35	1	40
ASE_00406	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.74	67	48737	29	6	18	5	27
ASE_00411	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	47	49376	34	7	25	2	42
ASE_00412	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	62	58218	40	4	27	9	43
ASE_00413	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.50	39	44473	43	10	29	4	42
ASE_00415	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	54	54849	50	3	40	7	49
ASE_00416	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.63	74	77304	51	5	38	8	53
ASE_00419	RNaseP_bact_a links to Rfam database...	0.77	0.77	0.78	79	54845	24	9	13	2	24
ASE_00422	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.68	63	46879	34	5	24	5	31
ASE_00423	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	72	56847	36	7	27	2	37
ASE_00428	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.73	78	76529	38	2	27	9	47
ASE_00430	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	66	46877	35	5	23	7	31
ASE_00437	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	55	79296	53	1	49	3	80
ASE_00441	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	85	64166	20	2	8	10	27
ASE_00448	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	42	64162	65	8	49	8	70
ASE_00451	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	86	70767	24	2	21	1	39
RFA_00599	Telomerase-vert links to Rfam database...	0.71	0.73	0.70	81	101359	59	10	25	24	30
RFA_00601	Telomerase-vert links to Rfam database...	0.33	0.36	0.30	41	99097	108	37	60	11	73
RFA_00602	Telomerase-vert links to Rfam database...	0.63	0.67	0.58	78	101341	68	25	31	12	38
TMR_00017	tmRNA links to Rfam database...	0.49	0.44	0.54	45	67078	42	5	33	4	57
TMR_00018	tmRNA links to Rfam database...	0.38	0.37	0.40	34	64535	55	13	38	4	58
TMR_00038	tmRNA links to Rfam database...	0.26	0.25	0.26	28	71146	85	15	64	6	82
TMR_00042	tmRNA links to Rfam database...	0.29	0.30	0.29	29	62736	74	13	57	4	69
TMR_00046	tmRNA links to Rfam database...	0.60	0.58	0.62	56	62745	44	6	28	10	40
TMR_00048	tmRNA links to Rfam database...	0.40	0.41	0.40	39	64882	69	13	46	10	56
TMR_00080	tmRNA links to Rfam database...	0.43	0.42	0.44	40	70410	50	15	35	0	56
TMR_00082	tmRNA links to Rfam database...	0.29	0.28	0.30	27	67807	64	9	53	2	69
TMR_00123	tmRNA links to Rfam database...	0.53	0.51	0.55	52	66335	52	4	39	9	49
TMR_00137	tmRNA links to Rfam database...	0.37	0.34	0.41	30	61001	53	6	38	9	59
TMR_00142	tmRNA links to Rfam database...	0.57	0.58	0.56	59	70771	61	13	33	15	43
TMR_00207	tmRNA links to Rfam database...	0.43	0.40	0.48	41	72304	50	5	40	5	62
TMR_00257	tmRNA links to Rfam database...	0.25	0.22	0.27	22	67080	65	2	57	6	76
TMR_00271	tmRNA links to Rfam database...	0.64	0.62	0.67	56	64177	40	6	22	12	35
TMR_00332	tmRNA links to Rfam database...	0.45	0.40	0.50	40	67081	45	2	38	5	59
TMR_00366	tmRNA links to Rfam database...	0.52	0.50	0.53	50	67802	55	12	32	11	50
TMR_00378	tmRNA links to Rfam database...	0.24	0.25	0.24	24	67797	86	17	58	11	73
TMR_00399	tmRNA links to Rfam database...	0.44	0.43	0.47	40	64894	52	16	30	6	54
TMR_00404	tmRNA links to Rfam database...	0.56	0.58	0.55	53	67431	62	11	33	18	39
TMR_00427	tmRNA links to Rfam database...	0.45	0.42	0.48	41	67443	49	10	34	5	56
TMR_00443	tmRNA links to Rfam database...	0.57	0.51	0.65	53	67079	36	6	23	7	51
TMR_00451	tmRNA links to Rfam database...	0.19	0.19	0.18	17	63453	80	18	58	4	72
TMR_00458	tmRNA links to Rfam database...	0.32	0.30	0.35	28	63465	60	11	42	7	65
TMR_00469	tmRNA links to Rfam database...	0.53	0.53	0.53	53	64520	51	13	34	4	47
TMR_00472	tmRNA links to Rfam database...	0.64	0.64	0.64	62	64523	43	12	23	8	35
TMR_00519	tmRNA links to Rfam database...	0.33	0.32	0.35	30	63105	69	8	47	14	65
TMR_00520	tmRNA links to Rfam database...	0.44	0.41	0.48	41	63104	56	9	36	11	58
TMR_00522	tmRNA links to Rfam database...	0.36	0.35	0.38	34	63100	65	12	44	9	63
TMR_00528	tmRNA links to Rfam database...	0.36	0.36	0.35	35	63091	75	20	44	11	62
TMR_00540	tmRNA links to Rfam database...	0.35	0.35	0.36	36	73436	76	10	54	12	68
TMR_00568	tmRNA links to Rfam database...	0.51	0.51	0.53	50	60631	51	6	39	6	49
TMR_00571	tmRNA links to Rfam database...	0.65	0.64	0.66	63	60631	44	7	25	12	36
TMR_00580	tmRNA links to Rfam database...	0.41	0.41	0.41	41	60625	63	15	45	3	59
TMR_00584	tmRNA links to Rfam database...	0.63	0.61	0.65	59	60984	45	3	29	13	38
TMR_00586	tmRNA links to Rfam database...	0.41	0.41	0.41	40	60977	63	11	47	5	57
TMR_00616	tmRNA links to Rfam database...	0.42	0.41	0.42	41	67063	65	12	45	8	58
TMR_00699	tmRNA links to Rfam database...	0.67	0.62	0.72	63	67074	29	4	20	5	39
TMR_00702	tmRNA links to Rfam database...	0.36	0.32	0.40	32	67081	57	5	43	9	68
TMR_00703	tmRNA links to Rfam database...	0.59	0.56	0.62	55	67439	43	6	28	9	44

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of MXScarna(20) - scored higher in this pairwise comparison

1. Total counts & total scores for MXScarna(20)

2. Individual counts for MXScarna(20) [ download as .csv ]

Performance of Contrafold - scored lower in this pairwise comparison

1. Total counts & total scores for Contrafold

2. Individual counts for Contrafold [ download as .csv ]