CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	MXScarna(seed)		RSpredict(20)
MCC	0.655	>	0.304
Average MCC ± 95% Confidence Intervals	0.655 ± 0.021	>	0.272 ± 0.030
Sensitivity	0.542	>	0.172
Positive Predictive Value	0.793	>	0.538
Total TP	9490	>	3014
Total TN	9821186	<	9827544
Total FP	3063	>	2992
Total FP CONTRA	379	>	195
Total FP INCONS	2091	<	2393
Total FP COMP	593	>	404
Total FN	8028	<	14504
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of MXScarna(seed) and RSpredict(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for MXScarna(seed) and RSpredict(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for MXScarna(seed) and RSpredict(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for MXScarna(seed) and RSpredict(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for MXScarna(seed) and RSpredict(20)).

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Performance of MXScarna(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for MXScarna(seed)

Total Base Pair Counts
Total TP	9490
Total TN	9821186
Total FP	3063
Total FP CONTRA	379
Total FP INCONS	2091
Total FP COMP	593
Total FN	8028

Total Scores
MCC	0.655
Average MCC ± 95% Confidence Intervals	0.655 ± 0.021
Sensitivity	0.542
Positive Predictive Value	0.793
Nr of predictions	164

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2. Individual counts for MXScarna(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.52	0.41	0.65	40	47833	24	4	18	2	57
ASE_00005	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.92	67	57897	8	2	4	2	50
ASE_00006	RNaseP_bact_a links to Rfam database...	0.51	0.41	0.63	38	47526	25	3	19	3	55
ASE_00007	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	83	59593	12	4	5	3	27
ASE_00012	RNaseP_bact_a links to Rfam database...	0.64	0.55	0.75	68	73829	26	4	19	3	55
ASE_00018	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.91	86	80507	11	2	6	3	48
ASE_00020	RNaseP_bact_a links to Rfam database...	0.50	0.36	0.71	45	73857	21	6	12	3	81
ASE_00021	RNaseP_bact_a links to Rfam database...	0.49	0.36	0.66	57	104110	34	4	25	5	103
ASE_00022	RNaseP_bact_b links to Rfam database...	0.66	0.58	0.75	72	82932	31	5	19	7	52
ASE_00028	RNaseP_bact_b links to Rfam database...	0.69	0.60	0.78	76	84569	29	5	16	8	50
ASE_00035	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.86	78	70409	18	3	10	5	40
ASE_00037	RNaseP_bact_a links to Rfam database...	0.86	0.79	0.94	87	59247	9	2	4	3	23
ASE_00038	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.84	57	53560	14	1	10	3	44
ASE_00040	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.80	78	78906	22	4	15	3	55
ASE_00041	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	78	57543	12	2	7	3	30
ASE_00042	RNaseP_bact_a links to Rfam database...	0.68	0.52	0.87	76	90013	14	1	10	3	69
ASE_00044	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.93	82	54527	9	3	3	3	23
ASE_00064	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	63	45384	7	1	3	3	26
ASE_00068	RNaseP_bact_a links to Rfam database...	0.67	0.52	0.88	44	37625	8	1	5	2	41
ASE_00074	RNaseP_bact_a links to Rfam database...	0.81	0.70	0.94	83	67808	9	2	3	4	36
ASE_00075	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.69	56	108730	31	3	22	6	106
ASE_00077	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.85	60	45079	14	4	7	3	26
ASE_00078	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	60	43002	13	2	7	4	23
ASE_00080	RNaseP_bact_a links to Rfam database...	0.37	0.30	0.47	37	71552	44	6	36	2	86
ASE_00081	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	65	49695	13	2	8	3	32
ASE_00082	RNaseP_bact_a links to Rfam database...	0.35	0.24	0.50	28	70444	31	1	27	3	88
ASE_00083	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.89	62	62411	11	1	7	3	48
ASE_00084	RNaseP_bact_a links to Rfam database...	0.71	0.59	0.85	58	53560	14	1	9	4	41
ASE_00087	RNaseP_bact_a links to Rfam database...	0.31	0.21	0.46	30	88345	36	0	35	1	114
ASE_00090	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.81	55	55543	16	2	11	3	46
ASE_00092	RNaseP_bact_a links to Rfam database...	0.56	0.43	0.73	49	63479	21	2	16	3	64
ASE_00099	RNaseP_bact_a links to Rfam database...	0.83	0.73	0.96	87	64529	7	2	2	3	33
ASE_00104	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.93	87	64167	10	2	5	3	32
ASE_00105	RNaseP_bact_a links to Rfam database...	0.51	0.38	0.70	42	64201	21	5	13	3	69
ASE_00107	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.91	86	73058	12	2	7	3	41
ASE_00115	RNaseP_bact_a links to Rfam database...	0.54	0.43	0.68	43	54552	23	1	19	3	58
ASE_00118	RNaseP_bact_a links to Rfam database...	0.39	0.30	0.50	31	60664	34	3	28	3	71
ASE_00119	RNaseP_bact_a links to Rfam database...	0.30	0.24	0.38	26	62767	43	2	40	1	82
ASE_00123	RNaseP_bact_a links to Rfam database...	0.67	0.53	0.85	45	38450	10	2	6	2	40
ASE_00125	RNaseP_bact_a links to Rfam database...	0.68	0.51	0.90	45	39290	7	1	4	2	43
ASE_00128	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	54	53235	15	1	11	3	46
ASE_00129	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.88	59	62768	11	1	7	3	52
ASE_00131	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.83	40	39292	10	1	7	2	45
ASE_00134	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.86	59	50334	13	1	9	3	36
ASE_00135	RNaseP_bact_a links to Rfam database...	0.40	0.32	0.51	35	63121	35	4	30	1	74
ASE_00136	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	62	48137	9	1	5	3	30
ASE_00137	RNaseP_bact_a links to Rfam database...	0.53	0.43	0.66	42	48452	25	2	20	3	56
ASE_00138	RNaseP_bact_a links to Rfam database...	0.73	0.63	0.85	51	40410	13	3	6	4	30
ASE_00140	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.65	42	70811	26	3	20	3	83
ASE_00142	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	86	67064	14	3	8	3	36
ASE_00146	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.92	82	70787	10	2	5	3	42
ASE_00153	RNaseP_nuc links to Rfam database...	0.60	0.48	0.76	35	57584	26	0	11	15	38
ASE_00163	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	65	53228	11	2	6	3	28
ASE_00165	RNaseP_bact_a links to Rfam database...	0.56	0.43	0.74	43	52917	19	1	14	4	58
ASE_00170	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.82	58	48757	16	2	11	3	35
ASE_00171	RNaseP_bact_a links to Rfam database...	0.59	0.49	0.71	46	48451	22	1	18	3	48
ASE_00172	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.75	49	58931	19	4	12	3	57
ASE_00174	RNaseP_bact_a links to Rfam database...	0.54	0.42	0.69	46	61008	24	3	18	3	63
ASE_00175	RNaseP_bact_a links to Rfam database...	0.71	0.55	0.91	59	59966	9	1	5	3	48
ASE_00179	RNaseP_bact_a links to Rfam database...	0.57	0.49	0.66	41	44191	24	4	17	3	43
ASE_00180	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	61	51288	14	2	9	3	39
ASE_00181	RNaseP_bact_a links to Rfam database...	0.59	0.45	0.76	48	57567	19	3	12	4	58
ASE_00182	RNaseP_bact_a links to Rfam database...	0.35	0.24	0.51	33	84190	33	3	29	1	103
ASE_00183	RNaseP_bact_a links to Rfam database...	0.65	0.52	0.81	59	61352	17	0	14	3	54
ASE_00184	RNaseP_bact_a links to Rfam database...	0.69	0.55	0.86	56	54550	12	0	9	3	46
ASE_00185	RNaseP_bact_a links to Rfam database...	0.23	0.16	0.32	21	73470	46	8	37	1	107
ASE_00186	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.84	82	78905	21	2	14	5	50
ASE_00190	RNaseP_bact_b links to Rfam database...	0.53	0.42	0.67	38	45394	23	5	14	4	52
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.82	80	89156	20	2	15	3	65
ASE_00198	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.93	62	52583	8	1	4	3	40
ASE_00203	RNaseP_bact_a links to Rfam database...	0.56	0.47	0.68	45	46599	24	1	20	3	51
ASE_00212	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.82	80	93864	20	2	15	3	68
ASE_00214	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	65	56205	13	2	8	3	38
ASE_00215	RNaseP_bact_a links to Rfam database...	0.38	0.26	0.54	26	48468	23	2	20	1	73
ASE_00216	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.81	48	39281	14	3	8	3	34
ASE_00217	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.93	64	40401	8	2	3	3	26
ASE_00221	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	81	64529	13	2	8	3	36
ASE_00228	RNaseP_bact_a links to Rfam database...	0.62	0.51	0.76	44	46913	18	2	12	4	42
ASE_00229	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.84	54	42422	13	1	9	3	33
ASE_00231	RNaseP_bact_a links to Rfam database...	0.49	0.40	0.60	38	47832	27	5	20	2	58
ASE_00232	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.71	48	38435	23	4	16	3	36
ASE_00234	RNaseP_bact_a links to Rfam database...	0.23	0.17	0.32	22	75398	48	3	43	2	107
ASE_00238	RNaseP_bact_a links to Rfam database...	0.54	0.39	0.76	44	64203	17	3	11	3	70
ASE_00241	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	63	43885	11	2	6	3	24
ASE_00242	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	84	60982	12	2	7	3	28
ASE_00248	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.92	82	62392	11	2	5	4	32
ASE_00254	RNaseP_bact_a links to Rfam database...	0.67	0.59	0.77	48	36794	17	1	13	3	34
ASE_00255	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.74	65	74603	26	5	18	3	65
ASE_00257	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.90	56	50978	9	4	2	3	41
ASE_00263	RNaseP_bact_a links to Rfam database...	0.52	0.39	0.68	47	70431	25	3	19	3	73
ASE_00267	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.86	57	45084	12	2	7	3	31
ASE_00270	RNaseP_bact_a links to Rfam database...	0.39	0.27	0.56	35	72328	32	0	27	5	93
ASE_00274	RNaseP_bact_a links to Rfam database...	0.60	0.48	0.77	49	55547	18	1	14	3	54
ASE_00277	RNaseP_bact_a links to Rfam database...	0.60	0.48	0.75	44	48146	19	1	14	4	47
ASE_00279	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	66	53230	8	2	3	3	35
ASE_00280	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.85	61	51931	14	1	10	3	37
ASE_00281	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.91	60	44485	9	2	4	3	28
ASE_00282	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.65	45	77746	26	3	21	2	82
ASE_00283	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.82	60	61703	16	2	11	3	47
ASE_00284	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	58	58242	14	2	9	3	50
ASE_00285	RNaseP_bact_a links to Rfam database...	0.51	0.40	0.64	49	68930	30	2	25	3	73
ASE_00286	RNaseP_bact_a links to Rfam database...	0.68	0.58	0.82	53	46600	15	1	11	3	39
ASE_00287	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	56	54879	14	2	9	3	47
ASE_00292	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.92	90	81712	11	3	5	3	48
ASE_00294	RNaseP_bact_a links to Rfam database...	0.67	0.51	0.87	88	114380	16	2	11	3	83
ASE_00296	RNaseP_bact_a links to Rfam database...	0.68	0.54	0.87	78	91716	15	3	9	3	67
ASE_00297	RNaseP_bact_a links to Rfam database...	0.62	0.50	0.77	49	52911	18	0	15	3	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.55	0.42	0.72	47	67463	21	4	14	3	66
ASE_00318	RNaseP_bact_b links to Rfam database...	0.63	0.54	0.74	64	80113	37	6	17	14	54
ASE_00328	RNaseP_bact_b links to Rfam database...	0.73	0.66	0.80	74	72679	31	5	13	13	38
ASE_00332	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	87	81711	15	2	10	3	51
ASE_00335	RNaseP_bact_b links to Rfam database...	0.72	0.66	0.78	76	75369	33	6	15	12	40
ASE_00340	RNaseP_bact_a links to Rfam database...	0.51	0.45	0.59	38	45992	31	3	23	5	47
ASE_00342	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	83	62390	11	3	5	3	32
ASE_00353	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.86	60	57900	13	1	9	3	47
ASE_00361	RNaseP_bact_a links to Rfam database...	0.66	0.46	0.94	59	75403	7	1	3	3	68
ASE_00362	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.88	60	48137	12	2	6	4	31
ASE_00363	RNaseP_bact_a links to Rfam database...	0.77	0.63	0.94	59	51297	7	1	3	3	35
ASE_00364	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.87	60	54216	12	1	8	3	45
ASE_00366	RNaseP_bact_a links to Rfam database...	0.58	0.48	0.70	47	58586	23	6	14	3	51
ASE_00367	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	61	43002	11	2	6	3	25
ASE_00369	RNaseP_bact_a links to Rfam database...	0.71	0.58	0.86	62	55873	13	1	9	3	45
ASE_00370	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	60	41840	8	1	4	3	24
ASE_00372	RNaseP_bact_a links to Rfam database...	0.57	0.45	0.71	45	51940	21	2	16	3	55
ASE_00374	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.91	60	44784	9	2	4	3	28
ASE_00376	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.76	58	56877	21	2	16	3	47
ASE_00377	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.89	62	57560	11	1	7	3	45
ASE_00379	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	59	45988	12	2	7	3	30
ASE_00382	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	60	41837	11	2	6	3	24
ASE_00383	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	70	54538	10	2	5	3	35
ASE_00384	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	56	48450	13	1	9	3	36
ASE_00386	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.92	59	50339	8	1	4	3	37
ASE_00387	RNaseP_bact_a links to Rfam database...	0.60	0.50	0.71	52	55872	25	2	19	4	52
ASE_00388	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.85	57	45686	14	2	8	4	32
ASE_00390	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	58	42130	10	2	5	3	27
ASE_00393	RNaseP_bact_a links to Rfam database...	0.68	0.57	0.82	53	47830	15	1	11	3	40
ASE_00394	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	58	46904	12	1	8	3	35
ASE_00395	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	60	41552	7	1	3	3	24
ASE_00396	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.85	55	41551	12	2	8	2	28
ASE_00397	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	64	54544	10	2	5	3	41
ASE_00398	RNaseP_bact_a links to Rfam database...	0.65	0.52	0.82	54	55879	15	0	12	3	50
ASE_00400	RNaseP_bact_a links to Rfam database...	0.45	0.37	0.56	39	57900	33	2	29	2	67
ASE_00401	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	51	76961	19	0	16	3	75
ASE_00402	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.94	63	42419	7	1	3	3	22
ASE_00403	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	61	55877	10	1	6	3	46
ASE_00404	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.90	57	43008	10	2	4	4	28
ASE_00406	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.93	64	48759	8	2	3	3	30
ASE_00411	RNaseP_bact_a links to Rfam database...	0.59	0.48	0.72	43	49395	20	2	15	3	46
ASE_00412	RNaseP_bact_a links to Rfam database...	0.55	0.42	0.72	44	58250	20	1	16	3	61
ASE_00413	RNaseP_bact_a links to Rfam database...	0.68	0.57	0.82	46	44495	14	1	9	4	35
ASE_00415	RNaseP_bact_a links to Rfam database...	0.39	0.31	0.48	32	54880	36	3	31	2	71
ASE_00416	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	76	77326	23	3	16	4	51
ASE_00419	RNaseP_bact_a links to Rfam database...	0.59	0.49	0.72	50	54877	20	3	16	1	53
ASE_00422	RNaseP_bact_a links to Rfam database...	0.58	0.49	0.69	46	46904	24	3	18	3	48
ASE_00423	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.90	79	56865	13	3	6	4	30
ASE_00428	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	75	76542	22	5	14	3	50
ASE_00430	RNaseP_bact_a links to Rfam database...	0.55	0.45	0.68	44	46906	24	1	20	3	53
ASE_00437	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.69	67	79304	33	2	28	3	68
ASE_00441	RNaseP_bact_a links to Rfam database...	0.32	0.24	0.43	27	64198	40	4	32	4	85
ASE_00448	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	81	64169	14	2	9	3	31
ASE_00451	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.88	83	70782	14	2	9	3	42
RFA_00599	Telomerase-vert links to Rfam database...	0.54	0.51	0.57	57	101375	62	5	38	19	54
RFA_00601	Telomerase-vert links to Rfam database...	0.74	0.73	0.75	83	99124	49	4	24	21	31
RFA_00602	Telomerase-vert links to Rfam database...	0.69	0.68	0.69	79	101361	50	5	30	15	37

^top

Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

Total Base Pair Counts
Total TP	3014
Total TN	9827544
Total FP	2992
Total FP CONTRA	195
Total FP INCONS	2393
Total FP COMP	404
Total FN	14504

Total Scores
MCC	0.304
Average MCC ± 95% Confidence Intervals	0.272 ± 0.030
Sensitivity	0.172
Positive Predictive Value	0.538
Nr of predictions	164

^top

2. Individual counts for RSpredict(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.89	48	47841	10	0	6	4	49
ASE_00005	RNaseP_bact_a links to Rfam database...	0.35	0.19	0.67	22	57937	11	0	11	0	95
ASE_00006	RNaseP_bact_a links to Rfam database...	0.28	0.13	0.60	12	47566	8	0	8	0	81
ASE_00007	RNaseP_bact_a links to Rfam database...	0.25	0.10	0.65	11	59668	6	0	6	0	99
ASE_00012	RNaseP_bact_a links to Rfam database...	0.16	0.07	0.42	8	73901	14	0	11	3	115
ASE_00018	RNaseP_bact_a links to Rfam database...	0.15	0.07	0.30	10	80568	23	0	23	0	124
ASE_00020	RNaseP_bact_a links to Rfam database...	0.32	0.21	0.50	26	73868	28	6	20	2	100
ASE_00021	RNaseP_bact_a links to Rfam database...	0.16	0.08	0.32	12	104159	28	0	25	3	148
ASE_00022	RNaseP_bact_b links to Rfam database...	0.51	0.44	0.61	54	82939	41	5	30	6	70
ASE_00028	RNaseP_bact_b links to Rfam database...	0.68	0.59	0.80	74	84573	27	1	18	8	52
ASE_00035	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.68	44	70435	26	3	18	5	74
ASE_00037	RNaseP_bact_a links to Rfam database...	0.27	0.17	0.43	19	59296	27	1	24	2	91
ASE_00038	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.19	5	53602	21	3	18	0	96
ASE_00040	RNaseP_bact_a links to Rfam database...	0.20	0.09	0.46	12	78977	14	0	14	0	121
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57611	19	1	18	0	108
ASE_00042	RNaseP_bact_a links to Rfam database...	0.23	0.12	0.47	17	90064	20	1	18	1	128
ASE_00044	RNaseP_bact_a links to Rfam database...	0.21	0.08	0.57	8	54601	9	0	6	3	97
ASE_00064	RNaseP_bact_a links to Rfam database...	0.19	0.11	0.33	10	45421	22	3	17	2	79
ASE_00068	RNaseP_bact_a links to Rfam database...	0.37	0.25	0.57	21	37638	21	1	15	5	64
ASE_00074	RNaseP_bact_a links to Rfam database...	0.23	0.13	0.41	15	67859	24	0	22	2	104
ASE_00075	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.20	8	108771	32	1	31	0	154
ASE_00077	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.21	3	45136	14	1	10	3	83
ASE_00078	RNaseP_bact_a links to Rfam database...	0.57	0.39	0.84	32	43033	8	1	5	2	51
ASE_00080	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	71612	21	2	17	2	123
ASE_00081	RNaseP_bact_a links to Rfam database...	0.14	0.06	0.33	6	49752	13	1	11	1	91
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70476	25	3	21	1	116
ASE_00083	RNaseP_bact_a links to Rfam database...	0.14	0.06	0.32	7	62459	17	0	15	2	103
ASE_00084	RNaseP_bact_a links to Rfam database...	0.12	0.06	0.24	6	53603	21	0	19	2	93
ASE_00087	RNaseP_bact_a links to Rfam database...	0.39	0.26	0.59	37	88347	28	1	25	2	107
ASE_00090	RNaseP_bact_a links to Rfam database...	0.39	0.27	0.56	27	55563	23	3	18	2	74
ASE_00092	RNaseP_bact_a links to Rfam database...	0.15	0.07	0.31	8	63520	19	2	16	1	105
ASE_00099	RNaseP_bact_a links to Rfam database...	0.45	0.27	0.76	32	64578	12	1	9	2	88
ASE_00104	RNaseP_bact_a links to Rfam database...	0.23	0.11	0.50	13	64235	14	0	13	1	106
ASE_00105	RNaseP_bact_a links to Rfam database...	0.15	0.06	0.35	7	64241	17	0	13	4	104
ASE_00107	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.89	78	73065	15	3	7	5	49
ASE_00115	RNaseP_bact_a links to Rfam database...	0.39	0.27	0.56	27	54567	23	0	21	2	74
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60705	22	0	21	1	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.22	4	62817	17	1	13	3	104
ASE_00123	RNaseP_bact_a links to Rfam database...	0.11	0.04	0.38	3	38495	7	0	5	2	82
ASE_00125	RNaseP_bact_a links to Rfam database...	0.36	0.16	0.82	14	39323	4	0	3	1	74
ASE_00128	RNaseP_bact_a links to Rfam database...	0.23	0.12	0.43	12	53273	17	1	15	1	88
ASE_00129	RNaseP_bact_a links to Rfam database...	0.17	0.07	0.40	8	62815	14	1	11	2	103
ASE_00131	RNaseP_bact_a links to Rfam database...	0.34	0.22	0.51	19	39303	24	0	18	6	66
ASE_00134	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.67	32	50355	17	3	13	1	63
ASE_00135	RNaseP_bact_a links to Rfam database...	0.36	0.24	0.53	26	63141	25	1	22	2	83
ASE_00136	RNaseP_bact_a links to Rfam database...	0.34	0.20	0.60	18	48175	15	0	12	3	74
ASE_00137	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.08	2	48491	24	2	21	1	96
ASE_00138	RNaseP_bact_a links to Rfam database...	0.68	0.59	0.79	48	40409	18	2	11	5	33
ASE_00140	RNaseP_bact_a links to Rfam database...	0.53	0.42	0.65	53	70795	33	3	25	5	72
ASE_00142	RNaseP_bact_a links to Rfam database...	0.33	0.18	0.59	22	67124	17	1	14	2	100
ASE_00146	RNaseP_bact_a links to Rfam database...	0.19	0.08	0.43	10	70853	14	2	11	1	114
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57614	24	5	11	8	73
ASE_00163	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.09	1	53290	14	1	9	4	92
ASE_00165	RNaseP_bact_a links to Rfam database...	0.17	0.09	0.35	9	52949	18	4	13	1	92
ASE_00170	RNaseP_bact_a links to Rfam database...	0.47	0.33	0.67	31	48782	17	1	14	2	62
ASE_00171	RNaseP_bact_a links to Rfam database...	0.20	0.09	0.47	8	48499	12	2	7	3	86
ASE_00172	RNaseP_bact_a links to Rfam database...	0.41	0.23	0.73	24	58963	11	1	8	2	82
ASE_00174	RNaseP_bact_a links to Rfam database...	0.16	0.07	0.35	8	61052	16	1	14	1	101
ASE_00175	RNaseP_bact_a links to Rfam database...	0.41	0.25	0.68	27	59991	15	1	12	2	80
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44238	16	2	13	1	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.21	0.09	0.50	9	51342	13	1	8	4	91
ASE_00181	RNaseP_bact_a links to Rfam database...	0.32	0.16	0.63	17	57603	10	0	10	0	89
ASE_00182	RNaseP_bact_a links to Rfam database...	0.15	0.09	0.27	12	84210	35	3	30	2	124
ASE_00183	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61405	20	0	20	0	113
ASE_00184	RNaseP_bact_a links to Rfam database...	0.17	0.06	0.50	6	54603	8	0	6	2	96
ASE_00185	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.26	9	73501	29	0	26	3	119
ASE_00186	RNaseP_bact_a links to Rfam database...	0.24	0.13	0.46	17	78966	22	1	19	2	115
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45434	18	4	13	1	90
ASE_00197	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.10	3	89222	28	0	28	0	142
ASE_00198	RNaseP_bact_a links to Rfam database...	0.06	0.02	0.18	2	52639	10	0	9	1	100
ASE_00203	RNaseP_bact_a links to Rfam database...	0.16	0.06	0.43	6	46651	8	0	8	0	90
ASE_00212	RNaseP_bact_a links to Rfam database...	0.21	0.11	0.40	17	93918	26	4	22	0	131
ASE_00214	RNaseP_bact_a links to Rfam database...	0.18	0.09	0.38	9	56256	18	0	15	3	94
ASE_00215	RNaseP_bact_a links to Rfam database...	0.22	0.15	0.31	15	48468	34	1	32	1	84
ASE_00216	RNaseP_bact_a links to Rfam database...	0.19	0.09	0.41	7	39323	10	0	10	0	75
ASE_00217	RNaseP_bact_a links to Rfam database...	0.11	0.04	0.27	4	40455	11	0	11	0	86
ASE_00221	RNaseP_bact_a links to Rfam database...	0.26	0.13	0.54	15	64592	14	0	13	1	102
ASE_00228	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	54	46905	18	3	9	6	32
ASE_00229	RNaseP_bact_a links to Rfam database...	0.56	0.39	0.81	34	42444	9	2	6	1	53
ASE_00231	RNaseP_bact_a links to Rfam database...	0.18	0.08	0.40	8	47875	15	0	12	3	88
ASE_00232	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	60	38439	9	1	3	5	24
ASE_00234	RNaseP_bact_a links to Rfam database...	0.30	0.19	0.47	24	75415	28	4	23	1	105
ASE_00238	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.04	1	64236	27	1	23	3	113
ASE_00241	RNaseP_bact_a links to Rfam database...	0.67	0.60	0.75	52	43887	22	2	15	5	35
ASE_00242	RNaseP_bact_a links to Rfam database...	0.29	0.14	0.57	16	61047	14	0	12	2	96
ASE_00248	RNaseP_bact_a links to Rfam database...	0.30	0.16	0.58	18	62450	16	0	13	3	96
ASE_00254	RNaseP_bact_a links to Rfam database...	0.29	0.12	0.71	10	36842	6	0	4	2	72
ASE_00255	RNaseP_bact_a links to Rfam database...	0.29	0.15	0.59	19	74659	16	1	12	3	111
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51014	29	3	23	3	97
ASE_00263	RNaseP_bact_a links to Rfam database...	0.33	0.23	0.46	28	70439	34	2	31	1	92
ASE_00267	RNaseP_bact_a links to Rfam database...	0.45	0.32	0.65	28	45107	17	1	14	2	60
ASE_00270	RNaseP_bact_a links to Rfam database...	0.24	0.14	0.42	18	72347	26	1	24	1	110
ASE_00274	RNaseP_bact_a links to Rfam database...	0.18	0.07	0.47	7	55596	11	1	7	3	96
ASE_00277	RNaseP_bact_a links to Rfam database...	0.11	0.05	0.24	5	48184	18	4	12	2	86
ASE_00279	RNaseP_bact_a links to Rfam database...	0.61	0.48	0.79	48	53240	18	2	11	5	53
ASE_00280	RNaseP_bact_a links to Rfam database...	0.63	0.54	0.74	53	51931	23	0	19	4	45
ASE_00281	RNaseP_bact_a links to Rfam database...	0.23	0.09	0.57	8	44537	8	0	6	2	80
ASE_00282	RNaseP_bact_a links to Rfam database...	0.14	0.06	0.31	8	77789	20	2	16	2	119
ASE_00283	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.86	54	61713	13	0	9	4	53
ASE_00284	RNaseP_bact_a links to Rfam database...	0.27	0.14	0.54	15	58283	16	0	13	3	93
ASE_00285	RNaseP_bact_a links to Rfam database...	0.39	0.25	0.60	31	68954	22	3	18	1	91
ASE_00286	RNaseP_bact_a links to Rfam database...	0.24	0.11	0.53	10	46646	12	0	9	3	82
ASE_00287	RNaseP_bact_a links to Rfam database...	0.16	0.08	0.33	8	54922	16	4	12	0	95
ASE_00292	RNaseP_bact_a links to Rfam database...	0.20	0.11	0.37	15	81769	28	1	25	2	123
ASE_00294	RNaseP_bact_a links to Rfam database...	0.15	0.08	0.29	14	114432	37	1	34	2	157
ASE_00296	RNaseP_bact_a links to Rfam database...	0.12	0.06	0.22	9	91765	32	2	30	0	136
ASE_00297	RNaseP_bact_a links to Rfam database...	0.21	0.10	0.45	10	52953	14	0	12	2	88
ASE_00298	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.50	13	67502	15	1	12	2	100
ASE_00318	RNaseP_bact_b links to Rfam database...	0.60	0.48	0.74	57	80123	31	2	18	11	61
ASE_00328	RNaseP_bact_b links to Rfam database...	0.63	0.56	0.71	63	72682	35	1	25	9	49
ASE_00332	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.49	17	81775	19	0	18	1	121
ASE_00335	RNaseP_bact_b links to Rfam database...	0.68	0.61	0.76	71	75372	32	2	21	9	45
ASE_00340	RNaseP_bact_a links to Rfam database...	0.59	0.41	0.83	35	46014	10	2	5	3	50
ASE_00342	RNaseP_bact_a links to Rfam database...	0.57	0.39	0.83	45	62427	11	2	7	2	70
ASE_00353	RNaseP_bact_a links to Rfam database...	0.29	0.12	0.68	13	57951	8	0	6	2	94
ASE_00361	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.10	1	75456	11	0	9	2	126
ASE_00362	RNaseP_bact_a links to Rfam database...	0.17	0.08	0.37	7	48186	14	0	12	2	84
ASE_00363	RNaseP_bact_a links to Rfam database...	0.39	0.26	0.60	24	51320	18	1	15	2	70
ASE_00364	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	54262	19	0	19	0	101
ASE_00366	RNaseP_bact_a links to Rfam database...	0.06	0.03	0.10	3	58624	26	4	22	0	95
ASE_00367	RNaseP_bact_a links to Rfam database...	0.27	0.15	0.50	13	43045	15	2	11	2	73
ASE_00369	RNaseP_bact_a links to Rfam database...	0.43	0.26	0.72	28	55906	15	0	11	4	79
ASE_00370	RNaseP_bact_a links to Rfam database...	0.13	0.06	0.29	5	41888	13	1	11	1	79
ASE_00372	RNaseP_bact_a links to Rfam database...	0.44	0.29	0.67	29	51960	15	2	12	1	71
ASE_00374	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.07	1	44836	19	0	13	6	87
ASE_00376	RNaseP_bact_a links to Rfam database...	0.43	0.25	0.76	26	56919	10	0	8	2	79
ASE_00377	RNaseP_bact_a links to Rfam database...	0.18	0.09	0.36	10	57602	19	1	17	1	97
ASE_00379	RNaseP_bact_a links to Rfam database...	0.47	0.29	0.74	26	46021	11	1	8	2	63
ASE_00382	RNaseP_bact_a links to Rfam database...	0.57	0.42	0.78	35	41860	12	1	9	2	49
ASE_00383	RNaseP_bact_a links to Rfam database...	0.17	0.08	0.38	8	54594	15	2	11	2	97
ASE_00384	RNaseP_bact_a links to Rfam database...	0.19	0.10	0.38	9	48492	18	1	14	3	83
ASE_00386	RNaseP_bact_a links to Rfam database...	0.13	0.05	0.33	5	50388	11	0	10	1	91
ASE_00387	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.50	12	55921	15	1	11	3	92
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45739	14	1	13	0	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.71	30	42153	16	1	11	4	55
ASE_00393	RNaseP_bact_a links to Rfam database...	0.36	0.22	0.61	20	47862	15	1	12	2	73
ASE_00394	RNaseP_bact_a links to Rfam database...	0.71	0.60	0.84	56	46904	17	2	9	6	37
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41595	22	1	20	1	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.05	1	41597	20	0	18	2	82
ASE_00397	RNaseP_bact_a links to Rfam database...	0.31	0.17	0.55	18	54582	17	2	13	2	87
ASE_00398	RNaseP_bact_a links to Rfam database...	0.15	0.08	0.30	8	55918	22	0	19	3	96
ASE_00400	RNaseP_bact_a links to Rfam database...	0.28	0.15	0.53	16	57940	18	1	13	4	90
ASE_00401	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77010	20	0	18	2	126
ASE_00402	RNaseP_bact_a links to Rfam database...	0.12	0.05	0.31	4	42473	11	0	9	2	81
ASE_00403	RNaseP_bact_a links to Rfam database...	0.44	0.27	0.73	29	55905	13	3	8	2	78
ASE_00404	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.19	3	43055	18	1	12	5	82
ASE_00406	RNaseP_bact_a links to Rfam database...	0.30	0.18	0.49	17	48793	19	3	15	1	77
ASE_00411	RNaseP_bact_a links to Rfam database...	0.21	0.10	0.43	9	49434	15	1	11	3	80
ASE_00412	RNaseP_bact_a links to Rfam database...	0.15	0.08	0.30	8	58284	21	2	17	2	97
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44533	19	1	17	1	81
ASE_00415	RNaseP_bact_a links to Rfam database...	0.13	0.06	0.30	6	54926	14	2	12	0	97
ASE_00416	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.27	3	77410	8	0	8	0	124
ASE_00419	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.48	12	54921	14	2	11	1	91
ASE_00422	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.07	2	46944	27	0	25	2	92
ASE_00423	RNaseP_bact_a links to Rfam database...	0.45	0.23	0.89	25	56925	6	0	3	3	84
ASE_00428	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.13	2	76620	15	1	13	1	123
ASE_00430	RNaseP_bact_a links to Rfam database...	0.20	0.09	0.45	9	46951	11	0	11	0	88
ASE_00437	RNaseP_bact_a links to Rfam database...	0.57	0.41	0.81	55	79333	18	2	11	5	80
ASE_00441	RNaseP_bact_a links to Rfam database...	0.28	0.16	0.47	18	64223	24	1	19	4	94
ASE_00448	RNaseP_bact_a links to Rfam database...	0.58	0.46	0.74	51	64192	22	2	16	4	61
ASE_00451	RNaseP_bact_a links to Rfam database...	0.41	0.25	0.67	31	70830	17	1	14	2	94
RFA_00599	Telomerase-vert links to Rfam database...	0.44	0.32	0.61	36	101416	35	2	21	12	75
RFA_00601	Telomerase-vert links to Rfam database...	0.53	0.35	0.80	40	99185	20	0	10	10	74
RFA_00602	Telomerase-vert links to Rfam database...	0.44	0.29	0.65	34	101423	27	1	17	9	82

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of MXScarna(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for MXScarna(seed)

2. Individual counts for MXScarna(seed) [ download as .csv ]

Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

2. Individual counts for RSpredict(20) [ download as .csv ]