CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Multilign(20)		CentroidFold
MCC	0.649	>	0.617
Average MCC ± 95% Confidence Intervals	0.651 ± 0.017	>	0.614 ± 0.020
Sensitivity	0.590	>	0.548
Positive Predictive Value	0.717	>	0.696
Total TP	11762	>	10931
Total TN	11481126	<	11481835
Total FP	5457	<	5499
Total FP CONTRA	614	<	667
Total FP INCONS	4034	<	4103
Total FP COMP	809	>	729
Total FN	8190	<	9021
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Multilign(20) and CentroidFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Multilign(20) and CentroidFold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Multilign(20) and CentroidFold).
Comparison of average Matthews Correlation Coefficients (MCCs) for Multilign(20) and CentroidFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Multilign(20) and CentroidFold).

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Performance of Multilign(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Multilign(20)

Total Base Pair Counts
Total TP	11762
Total TN	11481126
Total FP	5457
Total FP CONTRA	614
Total FP INCONS	4034
Total FP COMP	809
Total FN	8190

Total Scores
MCC	0.649
Average MCC ± 95% Confidence Intervals	0.651 ± 0.017
Sensitivity	0.590
Positive Predictive Value	0.717
Nr of predictions	191

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2. Individual counts for Multilign(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00005	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.82	77	57876	23	0	17	6	40
ASE_00006	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.81	71	47498	22	1	16	5	22
ASE_00007	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.78	69	59596	25	0	20	5	41
ASE_00012	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	69	73820	36	3	28	5	54
ASE_00018	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.84	90	80494	19	1	16	2	44
ASE_00020	RNaseP_bact_a links to Rfam database...	0.49	0.43	0.56	54	73823	43	4	39	0	72
ASE_00021	RNaseP_bact_a links to Rfam database...	0.62	0.51	0.75	82	104086	30	5	23	2	78
ASE_00035	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.68	67	70402	35	3	28	4	51
ASE_00037	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.64	54	59255	31	4	27	0	56
ASE_00038	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.61	54	53540	37	3	31	3	47
ASE_00040	RNaseP_bact_a links to Rfam database...	0.69	0.62	0.75	83	78893	28	0	27	1	50
ASE_00041	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	72	57538	21	1	19	1	36
ASE_00042	RNaseP_bact_a links to Rfam database...	0.50	0.41	0.61	60	90002	41	2	36	3	85
ASE_00044	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	81	54524	12	0	10	2	24
ASE_00064	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.86	60	45381	21	0	10	11	29
ASE_00068	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.82	60	37602	17	0	13	4	25
ASE_00074	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.87	93	67789	14	1	13	0	26
ASE_00075	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.87	104	108691	24	3	13	8	58
ASE_00077	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.67	47	45080	33	5	18	10	39
ASE_00078	RNaseP_bact_a links to Rfam database...	0.81	0.77	0.84	64	42995	18	0	12	6	19
ASE_00080	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.57	59	71528	44	5	39	0	64
ASE_00081	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.86	73	49685	13	0	12	1	24
ASE_00082	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.63	62	70402	47	3	33	11	54
ASE_00083	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.91	81	62392	10	0	8	2	29
ASE_00084	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.67	54	53547	27	1	26	0	45
ASE_00087	RNaseP_bact_a links to Rfam database...	0.47	0.40	0.57	57	88310	43	2	41	0	87
ASE_00090	RNaseP_bact_a links to Rfam database...	0.52	0.46	0.60	46	55534	36	5	26	5	55
ASE_00092	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.76	71	63452	24	0	23	1	42
ASE_00099	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.86	91	64514	16	2	13	1	29
ASE_00104	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	90	64160	16	1	10	5	29
ASE_00105	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	54	64168	41	6	33	2	57
ASE_00107	RNaseP_bact_a links to Rfam database...	0.64	0.57	0.73	72	73055	28	1	25	2	55
ASE_00115	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	62	54541	12	1	11	0	39
ASE_00118	RNaseP_bact_a links to Rfam database...	0.55	0.49	0.62	50	60645	33	1	30	2	52
ASE_00119	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.61	54	62747	36	1	33	2	54
ASE_00123	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	43	38431	33	1	28	4	42
ASE_00126	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.71	57	40390	30	3	20	7	25
ASE_00128	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.87	62	53230	13	1	8	4	38
ASE_00129	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.75	70	62742	23	2	21	0	41
ASE_00131	RNaseP_bact_a links to Rfam database...	0.48	0.42	0.54	36	39273	36	2	29	5	49
ASE_00134	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.74	64	50317	23	3	19	1	31
ASE_00135	RNaseP_bact_a links to Rfam database...	0.54	0.49	0.60	53	63102	40	6	29	5	56
ASE_00136	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.89	72	48124	16	0	9	7	20
ASE_00137	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.56	47	48432	42	0	37	5	51
ASE_00138	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.87	59	40402	12	3	6	3	22
ASE_00140	RNaseP_bact_a links to Rfam database...	0.46	0.38	0.55	48	70789	40	3	36	1	77
ASE_00142	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	82	67056	25	3	20	2	40
ASE_00146	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.76	67	70788	22	1	20	1	57
ASE_00153	RNaseP_nuc links to Rfam database...	0.38	0.37	0.39	27	57560	76	9	34	33	46
ASE_00163	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.71	62	53214	27	7	18	2	31
ASE_00165	RNaseP_bact_a links to Rfam database...	0.54	0.49	0.60	49	52893	35	6	27	2	52
ASE_00170	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.90	72	48748	10	2	6	2	21
ASE_00171	RNaseP_bact_a links to Rfam database...	0.88	0.80	0.96	75	48438	8	0	3	5	19
ASE_00172	RNaseP_bact_a links to Rfam database...	0.66	0.58	0.76	61	58916	25	3	16	6	45
ASE_00174	RNaseP_bact_a links to Rfam database...	0.53	0.45	0.63	49	60997	32	1	28	3	60
ASE_00175	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.73	59	59950	27	2	20	5	48
ASE_00179	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	58	44184	15	1	10	4	26
ASE_00180	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.85	70	51278	15	3	9	3	30
ASE_00181	RNaseP_bact_a links to Rfam database...	0.67	0.63	0.71	67	57536	30	0	27	3	39
ASE_00182	RNaseP_bact_a links to Rfam database...	0.48	0.40	0.57	55	84158	42	2	40	0	81
ASE_00183	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.77	71	61333	23	0	21	2	42
ASE_00184	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.85	69	54534	20	0	12	8	33
ASE_00185	RNaseP_bact_a links to Rfam database...	0.42	0.38	0.47	48	73434	58	2	52	4	80
ASE_00190	RNaseP_bact_b links to Rfam database...	0.46	0.37	0.57	33	45393	28	4	21	3	57
ASE_00197	RNaseP_bact_a links to Rfam database...	0.42	0.36	0.50	52	89150	54	1	50	3	93
ASE_00198	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.69	59	52564	30	3	24	3	43
ASE_00203	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.61	50	46583	36	0	32	4	46
ASE_00212	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.74	88	93842	33	1	30	2	60
ASE_00214	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	81	56187	17	3	9	5	22
ASE_00215	RNaseP_bact_a links to Rfam database...	0.18	0.15	0.23	15	48450	55	4	47	4	84
ASE_00216	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.74	55	39266	26	2	17	7	27
ASE_00217	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	41	40395	39	1	33	5	49
ASE_00221	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.74	66	64531	24	0	23	1	51
ASE_00228	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.72	58	46890	26	4	19	3	28
ASE_00229	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	50	42406	32	4	26	2	37
ASE_00231	RNaseP_bact_a links to Rfam database...	0.44	0.40	0.50	38	47819	42	3	35	4	58
ASE_00232	RNaseP_bact_a links to Rfam database...	0.81	0.81	0.81	68	38419	17	6	10	1	16
ASE_00234	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.76	78	75363	27	6	19	2	51
ASE_00238	RNaseP_bact_a links to Rfam database...	0.50	0.45	0.55	51	64169	42	6	35	1	63
ASE_00241	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	62	43884	15	1	9	5	25
ASE_00242	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.80	74	60982	24	1	18	5	38
ASE_00254	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	38	36780	39	5	33	1	44
ASE_00257	RNaseP_bact_a links to Rfam database...	0.70	0.64	0.78	62	50960	25	1	17	7	35
ASE_00263	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	49	70405	47	6	40	1	71
ASE_00267	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.82	60	45077	21	1	12	8	28
ASE_00270	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.64	63	72292	38	2	33	3	65
ASE_00274	RNaseP_bact_a links to Rfam database...	0.59	0.51	0.67	53	55532	28	5	21	2	50
ASE_00277	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	68	48123	16	0	14	2	23
ASE_00279	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.82	74	53211	20	2	14	4	27
ASE_00280	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.78	65	51920	21	1	17	3	33
ASE_00281	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.89	64	44479	15	1	7	7	24
ASE_00282	RNaseP_bact_a links to Rfam database...	0.48	0.42	0.56	53	77721	42	3	38	1	74
ASE_00283	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.80	72	61686	23	0	18	5	35
ASE_00284	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	64	58221	29	3	23	3	44
ASE_00285	RNaseP_bact_a links to Rfam database...	0.58	0.51	0.67	62	68914	32	3	27	2	60
ASE_00286	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.91	68	46590	10	1	6	3	24
ASE_00287	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.68	58	54861	28	0	27	1	45
ASE_00292	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.84	89	81704	22	2	15	5	49
ASE_00294	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.89	108	114359	16	1	13	2	63
ASE_00296	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.76	78	91704	26	1	23	2	67
ASE_00297	RNaseP_bact_a links to Rfam database...	0.62	0.53	0.72	52	52903	21	1	19	1	46
ASE_00298	RNaseP_bact_a links to Rfam database...	0.48	0.43	0.53	49	67435	46	2	42	2	64
ASE_00328	RNaseP_bact_b links to Rfam database...	0.76	0.67	0.87	75	72685	23	1	10	12	37
ASE_00332	RNaseP_bact_a links to Rfam database...	0.45	0.37	0.55	51	81717	44	3	39	2	87
ASE_00340	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.63	46	45983	31	8	19	4	39
ASE_00342	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.88	87	62382	12	2	10	0	28
ASE_00353	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.69	66	57874	35	2	28	5	41
ASE_00361	RNaseP_bact_a links to Rfam database...	0.58	0.49	0.69	62	75376	29	3	25	1	65
ASE_00362	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.86	59	48136	10	0	10	0	32
ASE_00363	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.90	69	51283	14	1	7	6	25
ASE_00364	RNaseP_bact_a links to Rfam database...	0.63	0.56	0.71	59	54202	29	1	23	5	46
ASE_00366	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.67	56	58570	31	6	21	4	42
ASE_00367	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.61	46	42995	36	1	29	6	40
ASE_00369	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.92	79	55859	7	1	6	0	28
ASE_00370	RNaseP_bact_a links to Rfam database...	0.86	0.81	0.92	68	41831	14	0	6	8	16
ASE_00372	RNaseP_bact_a links to Rfam database...	0.67	0.59	0.77	59	51926	19	1	17	1	41
ASE_00374	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.90	64	44779	8	1	6	1	24
ASE_00376	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.71	64	56863	28	1	25	2	41
ASE_00377	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.69	59	57544	29	3	24	2	48
ASE_00379	RNaseP_bact_a links to Rfam database...	0.54	0.48	0.61	43	45986	38	0	27	11	46
ASE_00382	RNaseP_bact_a links to Rfam database...	0.86	0.81	0.92	68	41831	14	0	6	8	16
ASE_00383	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.85	76	54526	14	4	9	1	29
ASE_00384	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.75	60	48436	26	4	16	6	32
ASE_00386	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.70	58	50320	27	5	20	2	38
ASE_00387	RNaseP_bact_a links to Rfam database...	0.67	0.63	0.70	66	55851	29	0	28	1	38
ASE_00388	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.56	42	45678	40	2	31	7	47
ASE_00390	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.89	68	42119	17	0	8	9	17
ASE_00393	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.77	59	47818	20	1	17	2	34
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	67	46895	13	4	5	4	26
ASE_00395	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.77	58	41541	21	0	17	4	26
ASE_00396	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.79	55	41546	19	2	13	4	28
ASE_00397	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	72	54524	23	1	18	4	33
ASE_00398	RNaseP_bact_a links to Rfam database...	0.68	0.62	0.76	64	55861	29	1	19	9	40
ASE_00400	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.80	73	57879	19	1	17	1	33
ASE_00401	RNaseP_bact_a links to Rfam database...	0.52	0.44	0.63	55	76940	40	0	33	7	71
ASE_00402	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	59	42416	15	1	10	4	26
ASE_00403	RNaseP_bact_a links to Rfam database...	0.66	0.58	0.76	62	55863	25	3	17	5	45
ASE_00404	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	62	42996	17	1	12	4	23
ASE_00406	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.91	69	48752	15	0	7	8	25
ASE_00411	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.62	47	49379	30	10	19	1	42
ASE_00412	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.62	53	58226	34	3	29	2	52
ASE_00413	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.64	46	44479	27	2	24	1	35
ASE_00415	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	59	54853	40	2	32	6	44
ASE_00416	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.80	75	77327	28	1	18	9	52
ASE_00419	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.83	70	54862	16	3	11	2	33
ASE_00422	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	59	46883	30	4	25	1	35
ASE_00423	RNaseP_bact_a links to Rfam database...	0.84	0.77	0.92	84	56862	10	1	6	3	25
ASE_00428	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	68	76522	47	4	42	1	57
ASE_00430	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	74	46881	16	2	14	0	23
ASE_00437	RNaseP_bact_a links to Rfam database...	0.67	0.60	0.75	81	79293	27	1	26	0	54
ASE_00441	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.77	64	64178	19	2	17	0	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	66	64163	39	2	30	7	46
ASE_00451	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.77	75	70779	24	1	21	2	50
RFA_00599	Telomerase-vert links to Rfam database...	0.71	0.71	0.71	79	101363	50	13	20	17	32
RFA_00601	Telomerase-vert links to Rfam database...	0.58	0.54	0.61	62	99134	50	10	29	11	52
TMR_00017	tmRNA links to Rfam database...	0.59	0.56	0.62	57	67069	39	8	27	4	45
TMR_00018	tmRNA links to Rfam database...	0.59	0.54	0.65	50	64543	31	7	20	4	42
TMR_00038	tmRNA links to Rfam database...	0.73	0.66	0.79	73	71161	24	1	18	5	37
TMR_00042	tmRNA links to Rfam database...	0.61	0.57	0.65	56	62749	34	7	23	4	42
TMR_00046	tmRNA links to Rfam database...	0.65	0.63	0.67	60	62746	35	9	20	6	36
TMR_00048	tmRNA links to Rfam database...	0.59	0.55	0.63	52	64898	38	6	24	8	43
TMR_00080	tmRNA links to Rfam database...	0.51	0.46	0.56	44	70422	34	10	24	0	52
TMR_00082	tmRNA links to Rfam database...	0.65	0.59	0.71	57	67816	30	7	16	7	39
TMR_00123	tmRNA links to Rfam database...	0.64	0.59	0.68	60	66342	34	4	24	6	41
TMR_00137	tmRNA links to Rfam database...	0.33	0.28	0.38	25	61009	44	9	32	3	64
TMR_00142	tmRNA links to Rfam database...	0.62	0.64	0.61	65	70769	49	12	30	7	37
TMR_00207	tmRNA links to Rfam database...	0.40	0.35	0.45	36	72310	49	6	38	5	67
TMR_00257	tmRNA links to Rfam database...	0.68	0.61	0.76	60	67082	27	4	15	8	38
TMR_00271	tmRNA links to Rfam database...	0.64	0.56	0.74	51	64192	20	6	12	2	40
TMR_00366	tmRNA links to Rfam database...	0.64	0.60	0.67	60	67807	40	12	17	11	40
TMR_00378	tmRNA links to Rfam database...	0.67	0.63	0.71	61	67810	38	5	20	13	36
TMR_00399	tmRNA links to Rfam database...	0.48	0.45	0.52	42	64899	46	9	30	7	52
TMR_00404	tmRNA links to Rfam database...	0.59	0.59	0.60	54	67438	49	12	24	13	38
TMR_00427	tmRNA links to Rfam database...	0.53	0.41	0.69	40	67470	22	7	11	4	57
TMR_00443	tmRNA links to Rfam database...	0.67	0.59	0.77	61	67082	22	4	14	4	43
TMR_00451	tmRNA links to Rfam database...	0.52	0.45	0.60	40	63479	31	7	20	4	49
TMR_00458	tmRNA links to Rfam database...	0.70	0.63	0.77	59	63469	21	4	14	3	34
TMR_00469	tmRNA links to Rfam database...	0.75	0.73	0.78	73	64526	30	7	14	9	27
TMR_00472	tmRNA links to Rfam database...	0.76	0.73	0.80	71	64531	23	7	11	5	26
TMR_00519	tmRNA links to Rfam database...	0.60	0.57	0.64	54	63106	34	12	18	4	41
TMR_00520	tmRNA links to Rfam database...	0.67	0.62	0.73	61	63106	31	4	19	8	38
TMR_00522	tmRNA links to Rfam database...	0.53	0.47	0.60	46	63113	36	9	22	5	51
TMR_00528	tmRNA links to Rfam database...	0.51	0.45	0.58	44	63114	37	10	22	5	53
TMR_00568	tmRNA links to Rfam database...	0.62	0.59	0.65	58	60637	40	8	23	9	41
TMR_00571	tmRNA links to Rfam database...	0.69	0.65	0.73	64	60638	34	10	14	10	35
TMR_00580	tmRNA links to Rfam database...	0.62	0.61	0.63	61	60629	46	10	26	10	39
TMR_00584	tmRNA links to Rfam database...	0.65	0.61	0.69	59	60989	36	6	21	9	38
TMR_00586	tmRNA links to Rfam database...	0.60	0.59	0.61	57	60982	43	11	25	7	40
TMR_00616	tmRNA links to Rfam database...	0.65	0.63	0.68	62	67070	35	7	22	6	37
TMR_00699	tmRNA links to Rfam database...	0.69	0.60	0.80	61	67085	16	2	13	1	41
TMR_00702	tmRNA links to Rfam database...	0.63	0.54	0.73	54	67087	26	7	13	6	46

^top

Performance of CentroidFold - scored lower in this pairwise comparison

1. Total counts & total scores for CentroidFold

Total Base Pair Counts
Total TP	10931
Total TN	11481835
Total FP	5499
Total FP CONTRA	667
Total FP INCONS	4103
Total FP COMP	729
Total FN	9021

Total Scores
MCC	0.617
Average MCC ± 95% Confidence Intervals	0.614 ± 0.020
Sensitivity	0.548
Positive Predictive Value	0.696
Nr of predictions	191

^top

2. Individual counts for CentroidFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00005	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.81	63	57892	15	0	15	0	54
ASE_00006	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.56	45	47505	39	6	30	3	48
ASE_00007	RNaseP_bact_a links to Rfam database...	0.57	0.46	0.70	51	59612	25	0	22	3	59
ASE_00012	RNaseP_bact_a links to Rfam database...	0.54	0.44	0.68	54	73840	32	1	25	6	69
ASE_00018	RNaseP_bact_a links to Rfam database...	0.65	0.58	0.74	78	80495	29	0	28	1	56
ASE_00020	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	75	73824	22	1	20	1	51
ASE_00021	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.81	96	104077	29	2	21	6	64
ASE_00035	RNaseP_bact_a links to Rfam database...	0.40	0.32	0.50	38	70424	41	2	36	3	80
ASE_00037	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.67	38	59283	19	0	19	0	72
ASE_00038	RNaseP_bact_a links to Rfam database...	0.55	0.47	0.65	47	53556	27	4	21	2	54
ASE_00040	RNaseP_bact_a links to Rfam database...	0.15	0.14	0.17	18	78895	94	5	85	4	115
ASE_00041	RNaseP_bact_a links to Rfam database...	0.67	0.53	0.86	57	57564	12	0	9	3	51
ASE_00042	RNaseP_bact_a links to Rfam database...	0.59	0.53	0.66	77	89983	43	1	39	3	68
ASE_00044	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.72	70	54518	32	3	24	5	35
ASE_00064	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.77	51	45385	25	1	14	10	38
ASE_00068	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.87	45	37623	7	0	7	0	40
ASE_00074	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	58	67789	51	4	45	2	61
ASE_00075	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.86	109	108684	24	2	16	6	53
ASE_00077	RNaseP_bact_a links to Rfam database...	0.48	0.34	0.69	29	45108	14	3	10	1	57
ASE_00078	RNaseP_bact_a links to Rfam database...	0.72	0.59	0.88	49	43015	11	0	7	4	34
ASE_00080	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.74	61	71549	25	1	20	4	62
ASE_00081	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	56	49688	27	5	21	1	41
ASE_00082	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.91	80	70412	18	1	7	10	36
ASE_00083	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.85	70	62399	17	0	12	5	40
ASE_00084	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.88	65	53554	11	2	7	2	34
ASE_00087	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	101	88287	23	2	20	1	43
ASE_00090	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.64	60	55517	39	4	30	5	41
ASE_00092	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.92	84	63455	10	1	6	3	29
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	56	64519	45	5	40	0	64
ASE_00104	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.84	81	64164	17	2	14	1	38
ASE_00105	RNaseP_bact_a links to Rfam database...	0.56	0.48	0.65	53	64180	31	4	24	3	58
ASE_00107	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.86	87	73052	15	1	13	1	40
ASE_00115	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.75	69	54523	31	4	19	8	32
ASE_00118	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.75	60	60646	21	2	18	1	42
ASE_00119	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.77	78	62734	26	2	21	3	30
ASE_00123	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.65	44	38435	28	1	23	4	41
ASE_00126	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	46	40400	31	3	21	7	36
ASE_00128	RNaseP_bact_a links to Rfam database...	0.72	0.60	0.87	60	53232	12	1	8	3	40
ASE_00129	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	71	62748	19	0	16	3	40
ASE_00131	RNaseP_bact_a links to Rfam database...	0.76	0.64	0.90	54	39280	12	1	5	6	31
ASE_00134	RNaseP_bact_a links to Rfam database...	0.46	0.38	0.56	36	50339	28	2	26	0	59
ASE_00135	RNaseP_bact_a links to Rfam database...	0.60	0.51	0.70	56	63110	31	1	23	7	53
ASE_00136	RNaseP_bact_a links to Rfam database...	0.61	0.53	0.70	49	48135	30	1	20	9	43
ASE_00137	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.86	73	48431	13	3	9	1	25
ASE_00138	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.77	40	40418	13	4	8	1	41
ASE_00140	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.86	77	70786	14	3	10	1	48
ASE_00142	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.68	70	67058	37	4	29	4	52
ASE_00146	RNaseP_bact_a links to Rfam database...	0.56	0.48	0.66	59	70786	32	6	25	1	65
ASE_00153	RNaseP_nuc links to Rfam database...	0.46	0.42	0.51	31	57569	56	5	25	26	42
ASE_00163	RNaseP_bact_a links to Rfam database...	0.34	0.31	0.36	29	53221	60	4	47	9	64
ASE_00165	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.88	70	52895	11	1	9	1	31
ASE_00170	RNaseP_bact_a links to Rfam database...	0.69	0.61	0.78	57	48755	16	3	13	0	36
ASE_00171	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	64	48436	16	3	13	0	30
ASE_00172	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	76	58911	10	2	7	1	30
ASE_00174	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.71	60	60990	26	6	19	1	49
ASE_00175	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.40	36	59942	55	1	52	2	71
ASE_00179	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	50	44189	15	3	11	1	34
ASE_00180	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.91	62	51292	11	0	6	5	38
ASE_00181	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	49	57541	41	2	38	1	57
ASE_00182	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.77	86	84144	25	1	24	0	50
ASE_00183	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.77	77	61325	32	0	23	9	36
ASE_00184	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.81	78	54519	20	3	15	2	24
ASE_00185	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	82	73436	21	1	17	3	46
ASE_00190	RNaseP_bact_b links to Rfam database...	0.69	0.52	0.92	47	45400	8	0	4	4	43
ASE_00197	RNaseP_bact_a links to Rfam database...	0.65	0.58	0.73	84	89138	37	2	29	6	61
ASE_00198	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.77	64	52567	20	4	15	1	38
ASE_00203	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.83	68	46583	18	4	10	4	28
ASE_00212	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.79	93	93844	29	2	22	5	55
ASE_00214	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	78	56187	20	3	12	5	25
ASE_00215	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.63	49	48438	30	2	27	1	50
ASE_00216	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	47	39264	29	7	22	0	35
ASE_00217	RNaseP_bact_a links to Rfam database...	0.45	0.38	0.55	34	40408	29	2	26	1	56
ASE_00221	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	67	64542	14	0	11	3	50
ASE_00228	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.80	56	46901	16	7	7	2	30
ASE_00229	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.89	58	42421	7	1	6	0	29
ASE_00231	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	69	47818	9	1	7	1	27
ASE_00232	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.70	54	38426	23	10	13	0	30
ASE_00234	RNaseP_bact_a links to Rfam database...	0.57	0.47	0.69	61	75378	30	1	26	3	68
ASE_00238	RNaseP_bact_a links to Rfam database...	0.64	0.53	0.77	60	64183	19	0	18	1	54
ASE_00241	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	55	43896	6	0	5	1	32
ASE_00242	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.82	74	60985	19	4	12	3	38
ASE_00254	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.87	60	36787	15	4	5	6	22
ASE_00257	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	71	50959	12	0	10	2	26
ASE_00263	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	65	70389	46	3	43	0	55
ASE_00267	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.70	44	45087	23	1	18	4	44
ASE_00270	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	86	72278	27	3	23	1	42
ASE_00274	RNaseP_bact_a links to Rfam database...	0.49	0.42	0.57	43	55535	33	3	30	0	60
ASE_00277	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	51	48126	28	5	23	0	40
ASE_00279	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.61	50	53219	32	3	29	0	51
ASE_00280	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.77	54	51933	18	2	14	2	44
ASE_00281	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	55	44484	18	1	11	6	33
ASE_00282	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	58	77710	47	8	39	0	69
ASE_00283	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.76	67	61688	22	4	17	1	40
ASE_00284	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.72	64	58222	27	5	20	2	44
ASE_00285	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.88	92	68902	17	3	9	5	30
ASE_00286	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	59	46594	16	1	11	4	33
ASE_00287	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.77	62	54865	20	1	18	1	41
ASE_00292	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.69	72	81706	34	1	31	2	66
ASE_00294	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.81	111	114344	28	1	25	2	60
ASE_00296	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.63	76	91686	45	4	40	1	69
ASE_00297	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	66	52890	20	3	16	1	32
ASE_00298	RNaseP_bact_a links to Rfam database...	0.30	0.27	0.33	31	67435	65	7	55	3	82
ASE_00328	RNaseP_bact_b links to Rfam database...	0.74	0.61	0.89	68	72695	13	1	7	5	44
ASE_00332	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	72	81687	53	2	49	2	66
ASE_00340	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.51	37	45984	39	4	31	4	48
ASE_00342	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.80	74	62388	20	1	18	1	41
ASE_00353	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	77	57881	14	1	11	2	30
ASE_00361	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.63	63	75366	40	4	33	3	64
ASE_00362	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	53	48127	27	1	24	2	38
ASE_00363	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.89	59	51294	13	1	6	6	35
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.84	68	54204	17	0	13	4	37
ASE_00366	RNaseP_bact_a links to Rfam database...	0.45	0.40	0.51	39	58577	37	5	32	0	59
ASE_00367	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	40	42993	43	6	32	5	46
ASE_00369	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.84	67	55865	13	1	12	0	40
ASE_00370	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.74	56	41829	22	2	18	2	28
ASE_00372	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.74	64	51917	28	4	18	6	36
ASE_00374	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.79	63	44770	17	2	15	0	25
ASE_00376	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.74	64	56866	25	4	19	2	41
ASE_00377	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.85	75	57542	19	3	10	6	32
ASE_00379	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.68	50	45982	30	3	21	6	39
ASE_00382	RNaseP_bact_a links to Rfam database...	0.59	0.54	0.65	45	41836	27	5	19	3	39
ASE_00383	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.84	73	54528	17	1	13	3	32
ASE_00384	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	67	48435	18	1	13	4	25
ASE_00386	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.73	63	50317	29	1	22	6	33
ASE_00387	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.78	66	55860	20	1	18	1	38
ASE_00388	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.82	54	45687	13	0	12	1	35
ASE_00390	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.60	47	42117	32	7	24	1	38
ASE_00393	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.82	61	47821	19	1	12	6	32
ASE_00394	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.86	74	46885	14	3	9	2	19
ASE_00395	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	56	41544	18	1	15	2	28
ASE_00396	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.62	45	41543	29	2	26	1	38
ASE_00397	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.80	73	54524	19	3	15	1	32
ASE_00398	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.73	61	55862	25	1	21	3	43
ASE_00400	RNaseP_bact_a links to Rfam database...	0.68	0.58	0.78	62	57891	18	1	16	1	44
ASE_00401	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.70	76	76920	33	4	28	1	50
ASE_00402	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.84	53	42423	11	1	9	1	32
ASE_00403	RNaseP_bact_a links to Rfam database...	0.47	0.37	0.59	40	55877	31	0	28	3	67
ASE_00404	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.75	44	43012	16	1	14	1	41
ASE_00406	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.79	68	48742	21	5	13	3	26
ASE_00411	RNaseP_bact_a links to Rfam database...	0.55	0.46	0.65	41	49392	24	5	17	2	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.79	59	58236	19	1	15	3	46
ASE_00413	RNaseP_bact_a links to Rfam database...	0.56	0.48	0.66	39	44492	21	4	16	1	42
ASE_00415	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.66	50	54870	31	2	24	5	53
ASE_00416	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.68	71	77317	38	4	29	5	56
ASE_00419	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.87	77	54857	13	8	4	1	26
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.73	62	46886	28	5	18	5	32
ASE_00423	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.71	66	56860	29	5	22	2	43
ASE_00428	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.79	77	76539	23	2	18	3	48
ASE_00430	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.76	65	46886	27	4	16	7	32
ASE_00437	RNaseP_bact_a links to Rfam database...	0.50	0.40	0.64	54	79316	32	1	30	1	81
ASE_00441	RNaseP_bact_a links to Rfam database...	0.84	0.74	0.94	83	64173	9	0	5	4	29
ASE_00448	RNaseP_bact_a links to Rfam database...	0.46	0.37	0.57	41	64189	36	6	25	5	71
ASE_00451	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.82	86	70771	20	1	18	1	39
RFA_00599	Telomerase-vert links to Rfam database...	0.73	0.70	0.76	78	101372	49	7	18	24	33
RFA_00601	Telomerase-vert links to Rfam database...	0.34	0.36	0.32	41	99105	97	33	56	8	73
TMR_00017	tmRNA links to Rfam database...	0.55	0.41	0.74	42	67104	19	0	15	4	60
TMR_00018	tmRNA links to Rfam database...	0.45	0.38	0.52	35	64553	36	10	22	4	57
TMR_00038	tmRNA links to Rfam database...	0.27	0.25	0.28	28	71153	78	14	58	6	82
TMR_00042	tmRNA links to Rfam database...	0.38	0.34	0.42	33	62757	48	6	39	3	65
TMR_00046	tmRNA links to Rfam database...	0.60	0.56	0.64	54	62750	37	4	27	6	42
TMR_00048	tmRNA links to Rfam database...	0.48	0.46	0.49	44	64890	55	8	38	9	51
TMR_00080	tmRNA links to Rfam database...	0.42	0.36	0.49	35	70428	37	7	30	0	61
TMR_00082	tmRNA links to Rfam database...	0.29	0.26	0.32	25	67818	53	9	44	0	71
TMR_00123	tmRNA links to Rfam database...	0.56	0.50	0.63	50	66350	35	3	27	5	51
TMR_00137	tmRNA links to Rfam database...	0.34	0.27	0.43	24	61019	40	3	29	8	65
TMR_00142	tmRNA links to Rfam database...	0.61	0.58	0.64	59	70784	46	8	25	13	43
TMR_00207	tmRNA links to Rfam database...	0.46	0.38	0.55	39	72319	37	4	28	5	64
TMR_00257	tmRNA links to Rfam database...	0.26	0.20	0.33	20	67101	45	1	39	5	78
TMR_00271	tmRNA links to Rfam database...	0.62	0.57	0.68	52	64184	36	6	19	11	39
TMR_00366	tmRNA links to Rfam database...	0.52	0.45	0.59	45	67820	42	11	20	11	55
TMR_00378	tmRNA links to Rfam database...	0.36	0.30	0.44	29	67830	47	8	29	10	68
TMR_00399	tmRNA links to Rfam database...	0.41	0.35	0.47	33	64910	43	11	26	6	61
TMR_00404	tmRNA links to Rfam database...	0.60	0.58	0.62	53	67443	49	6	26	17	39
TMR_00427	tmRNA links to Rfam database...	0.44	0.34	0.56	33	67469	31	8	18	5	64
TMR_00443	tmRNA links to Rfam database...	0.62	0.50	0.76	52	67093	23	6	10	7	52
TMR_00451	tmRNA links to Rfam database...	0.23	0.19	0.27	17	63483	50	12	34	4	72
TMR_00458	tmRNA links to Rfam database...	0.35	0.29	0.42	27	63481	45	8	30	7	66
TMR_00469	tmRNA links to Rfam database...	0.57	0.52	0.63	52	64537	35	10	21	4	48
TMR_00472	tmRNA links to Rfam database...	0.52	0.42	0.63	41	64555	29	6	18	5	56
TMR_00519	tmRNA links to Rfam database...	0.40	0.31	0.54	29	63136	38	5	20	13	66
TMR_00520	tmRNA links to Rfam database...	0.50	0.42	0.60	42	63120	38	4	24	10	57
TMR_00522	tmRNA links to Rfam database...	0.41	0.35	0.47	34	63118	47	8	30	9	63
TMR_00528	tmRNA links to Rfam database...	0.41	0.36	0.46	35	63114	51	12	29	10	62
TMR_00568	tmRNA links to Rfam database...	0.53	0.49	0.56	49	60639	44	4	34	6	50
TMR_00571	tmRNA links to Rfam database...	0.61	0.53	0.70	52	60652	30	6	16	8	47
TMR_00580	tmRNA links to Rfam database...	0.44	0.41	0.47	41	60638	50	10	37	3	59
TMR_00584	tmRNA links to Rfam database...	0.67	0.61	0.75	59	60996	30	1	19	10	38
TMR_00586	tmRNA links to Rfam database...	0.42	0.41	0.43	40	60981	59	10	44	5	57
TMR_00616	tmRNA links to Rfam database...	0.45	0.41	0.49	41	67078	50	9	33	8	58
TMR_00699	tmRNA links to Rfam database...	0.54	0.46	0.63	47	67086	33	3	25	5	55
TMR_00702	tmRNA links to Rfam database...	0.35	0.27	0.46	27	67102	39	5	27	7	73

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Multilign(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Multilign(20)

2. Individual counts for Multilign(20) [ download as .csv ]

Performance of CentroidFold - scored lower in this pairwise comparison

1. Total counts & total scores for CentroidFold

2. Individual counts for CentroidFold [ download as .csv ]