CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	PETfold_pre2.0(20)		Mastr(seed)
MCC	0.757	>	0.000
Average MCC ± 95% Confidence Intervals	0.760 ± 0.013	>	0.000 ± 0.000
Sensitivity	0.675	>	0.000
Positive Predictive Value	0.849	>	0.000
Total TP	10582	>	0
Total TN	8764681	<	8777144
Total FP	2628	>	0
Total FP CONTRA	507	>	0
Total FP INCONS	1374	>	0
Total FP COMP	747	>	0
Total FN	5088	<	15670
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of PETfold_pre2.0(20) and Mastr(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PETfold_pre2.0(20) and Mastr(seed)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for PETfold_pre2.0(20) and Mastr(seed)).
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(20) and Mastr(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PETfold_pre2.0(20) and Mastr(seed)).

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Performance of PETfold_pre2.0(20) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(20)

Total Base Pair Counts
Total TP	10582
Total TN	8764681
Total FP	2628
Total FP CONTRA	507
Total FP INCONS	1374
Total FP COMP	747
Total FN	5088

Total Scores
MCC	0.757
Average MCC ± 95% Confidence Intervals	0.760 ± 0.013
Sensitivity	0.675
Positive Predictive Value	0.849
Nr of predictions	148

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2. Individual counts for PETfold_pre2.0(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.80	55	47826	18	1	13	4	42
ASE_00005	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	76	57884	14	3	7	4	41
ASE_00006	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.80	57	47515	17	1	13	3	36
ASE_00012	RNaseP_bact_a links to Rfam database...	0.70	0.64	0.77	79	73818	28	5	18	5	44
ASE_00018	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.87	91	80496	18	5	9	4	43
ASE_00020	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.83	67	73839	20	7	7	6	59
ASE_00021	RNaseP_bact_a links to Rfam database...	0.58	0.48	0.72	76	104090	33	7	23	3	84
ASE_00022	RNaseP_bact_b links to Rfam database...	0.77	0.71	0.85	88	82924	25	3	13	9	36
ASE_00028	RNaseP_bact_b links to Rfam database...	0.74	0.65	0.85	82	84569	23	3	12	8	44
ASE_00035	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.85	87	70398	23	4	11	8	31
ASE_00037	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	90	59239	16	4	7	5	20
ASE_00038	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	72	53546	15	3	7	5	29
ASE_00041	RNaseP_bact_a links to Rfam database...	0.82	0.81	0.84	87	57527	19	2	14	3	21
ASE_00042	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.79	83	89995	27	3	19	5	62
ASE_00044	RNaseP_bact_a links to Rfam database...	0.89	0.88	0.90	92	54513	13	4	6	3	13
ASE_00064	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.85	66	45373	18	3	9	6	23
ASE_00068	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	46	37614	18	5	10	3	39
ASE_00074	RNaseP_bact_a links to Rfam database...	0.84	0.79	0.90	94	67792	15	4	6	5	25
ASE_00077	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.87	72	45067	17	5	6	6	14
ASE_00078	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	71	42991	16	3	6	7	12
ASE_00081	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	70	49693	11	1	6	4	27
ASE_00082	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.81	64	70421	23	3	12	8	52
ASE_00084	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.80	65	53547	20	5	11	4	34
ASE_00090	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.90	73	55530	13	3	5	5	28
ASE_00092	RNaseP_bact_a links to Rfam database...	0.69	0.58	0.82	65	63467	20	3	11	6	48
ASE_00099	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.91	94	64517	14	3	6	5	26
ASE_00104	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.90	96	64154	17	4	7	6	23
ASE_00105	RNaseP_bact_a links to Rfam database...	0.57	0.49	0.66	54	64179	33	7	21	5	57
ASE_00118	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	65	60648	18	4	9	5	37
ASE_00119	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.81	57	62765	16	5	8	3	51
ASE_00123	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	54	38438	14	4	7	3	31
ASE_00125	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	54	39277	16	2	7	7	34
ASE_00126	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.88	69	40392	16	4	5	7	13
ASE_00129	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	73	62754	12	4	4	4	38
ASE_00131	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.87	53	39279	15	3	5	7	32
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.71	60	63106	27	5	19	3	49
ASE_00138	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	64	40397	14	2	7	5	17
ASE_00142	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.91	93	67059	15	3	6	6	29
ASE_00146	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.89	90	70775	16	4	7	5	34
ASE_00153	RNaseP_nuc links to Rfam database...	0.40	0.37	0.44	27	57569	41	7	27	7	46
ASE_00170	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	62	48748	24	5	13	6	31
ASE_00171	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.90	71	48437	14	3	5	6	23
ASE_00172	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.88	70	58916	14	5	5	4	36
ASE_00179	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.85	67	44174	18	5	7	6	17
ASE_00180	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.85	70	51278	16	4	8	4	30
ASE_00181	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.82	63	57553	20	5	9	6	43
ASE_00182	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.88	72	84173	14	4	6	4	64
ASE_00183	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.89	73	61343	12	3	6	3	40
ASE_00184	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.86	69	54535	14	4	7	3	33
ASE_00185	RNaseP_bact_a links to Rfam database...	0.69	0.53	0.91	68	73461	12	3	4	5	60
ASE_00186	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	82	78902	24	2	17	5	50
ASE_00190	RNaseP_bact_b links to Rfam database...	0.73	0.64	0.82	58	45380	21	3	10	8	32
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.56	0.80	81	89152	26	2	18	6	64
ASE_00198	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	73	52569	11	3	5	3	29
ASE_00203	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	69	46589	11	2	5	4	27
ASE_00212	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.81	79	93864	22	2	16	4	69
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	71	56201	13	3	5	5	32
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.77	47	48455	18	4	10	4	52
ASE_00216	RNaseP_bact_a links to Rfam database...	0.90	0.84	0.96	69	39268	9	3	0	6	13
ASE_00217	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.87	69	40391	15	4	6	5	21
ASE_00221	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.90	93	64517	14	4	6	4	24
ASE_00228	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.83	59	46900	16	2	10	4	27
ASE_00229	RNaseP_bact_a links to Rfam database...	0.88	0.80	0.96	70	42413	7	2	1	4	17
ASE_00231	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.77	55	47824	22	0	16	6	41
ASE_00232	RNaseP_bact_a links to Rfam database...	0.88	0.82	0.95	69	38430	8	3	1	4	15
ASE_00234	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.79	67	75381	22	8	10	4	62
ASE_00238	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.77	63	64179	25	5	14	6	51
ASE_00241	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.87	73	43872	15	4	7	4	14
ASE_00242	RNaseP_bact_a links to Rfam database...	0.87	0.85	0.90	95	60969	17	4	7	6	17
ASE_00248	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	92	62376	18	4	9	5	22
ASE_00254	RNaseP_bact_a links to Rfam database...	0.90	0.82	0.99	67	36788	6	1	0	5	15
ASE_00255	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.67	71	74585	35	5	30	0	59
ASE_00257	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.80	64	50960	21	5	11	5	33
ASE_00263	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.89	73	70418	14	3	6	5	47
ASE_00267	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	69	45072	15	4	5	6	19
ASE_00270	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.77	56	72317	21	2	15	4	72
ASE_00274	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	62	55531	22	5	13	4	41
ASE_00277	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.79	61	48128	20	6	10	4	30
ASE_00279	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	70	53223	13	2	6	5	31
ASE_00280	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.79	63	51923	21	4	13	4	35
ASE_00281	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	71	44471	12	4	5	3	17
ASE_00282	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	72	77735	12	4	4	4	55
ASE_00283	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	71	61694	14	4	7	3	36
ASE_00284	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	72	58232	11	3	4	4	36
ASE_00285	RNaseP_bact_a links to Rfam database...	0.73	0.59	0.90	72	68926	12	2	6	4	50
ASE_00286	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.89	72	46584	14	5	4	5	20
ASE_00287	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	64	54864	24	4	14	6	39
ASE_00292	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	93	81703	18	5	9	4	45
ASE_00294	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.90	99	114371	15	4	7	4	72
ASE_00296	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.87	93	91699	19	5	9	5	52
ASE_00297	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.76	56	52901	21	4	14	3	42
ASE_00298	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	69	67447	15	3	9	3	44
ASE_00318	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.84	81	80103	23	3	13	7	37
ASE_00328	RNaseP_bact_b links to Rfam database...	0.79	0.76	0.83	85	72668	27	3	15	9	27
ASE_00332	RNaseP_bact_a links to Rfam database...	0.81	0.70	0.92	97	81705	13	2	6	5	41
ASE_00335	RNaseP_bact_b links to Rfam database...	0.77	0.72	0.83	83	75366	28	3	14	11	33
ASE_00340	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	61	45986	16	3	6	7	24
ASE_00342	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	98	62374	14	4	5	5	17
ASE_00353	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	72	57891	13	2	5	6	35
ASE_00361	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.89	68	75390	14	2	6	6	59
ASE_00362	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.87	67	48128	17	3	7	7	24
ASE_00363	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	65	51283	18	1	11	6	29
ASE_00364	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	69	54206	16	2	8	6	36
ASE_00366	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.85	68	58573	16	5	7	4	30
ASE_00367	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.91	69	42995	12	2	5	5	17
ASE_00369	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.88	74	55861	15	3	7	5	33
ASE_00370	RNaseP_bact_a links to Rfam database...	0.87	0.83	0.91	70	41828	12	2	5	5	14
ASE_00372	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	69	51926	14	1	7	6	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.86	0.80	0.92	70	44774	10	2	4	4	18
ASE_00376	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.84	67	56873	18	3	10	5	38
ASE_00377	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	70	57550	13	3	7	3	37
ASE_00379	RNaseP_bact_a links to Rfam database...	0.88	0.83	0.94	74	45977	11	1	4	6	15
ASE_00382	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.85	68	41825	20	3	9	8	16
ASE_00383	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.90	74	54533	14	3	5	6	31
ASE_00384	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	71	48436	14	3	6	5	21
ASE_00386	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	69	50325	12	2	7	3	27
ASE_00387	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	64	55866	19	2	13	4	40
ASE_00388	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.84	67	45673	20	3	10	7	22
ASE_00390	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	70	42116	13	3	6	4	15
ASE_00393	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.77	62	47814	24	3	16	5	31
ASE_00394	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.89	70	46892	15	4	5	6	23
ASE_00395	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.87	68	41538	14	4	6	4	16
ASE_00396	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.89	70	41537	14	4	5	5	13
ASE_00397	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	72	54535	14	3	5	6	33
ASE_00398	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	64	55866	18	3	12	3	40
ASE_00400	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	73	57888	15	3	6	6	33
ASE_00401	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.85	64	76953	16	4	7	5	62
ASE_00402	RNaseP_bact_a links to Rfam database...	0.81	0.79	0.83	67	42405	16	4	10	2	18
ASE_00403	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.92	71	55868	12	1	5	6	36
ASE_00404	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	70	42992	16	4	5	7	15
ASE_00406	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.83	66	48748	18	3	11	4	28
ASE_00411	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.71	60	49371	28	7	17	4	29
ASE_00412	RNaseP_bact_a links to Rfam database...	0.61	0.54	0.70	57	58229	28	5	20	3	48
ASE_00413	RNaseP_bact_a links to Rfam database...	0.77	0.77	0.78	62	44472	24	6	11	7	19
ASE_00415	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.69	51	54872	26	2	21	3	52
ASE_00416	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.81	85	77316	25	4	16	5	42
ASE_00419	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.82	64	54868	18	4	10	4	39
ASE_00422	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.92	69	46896	12	0	6	6	25
ASE_00423	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	81	56855	22	2	15	5	28
ASE_00428	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.81	88	76528	24	6	14	4	37
ASE_00430	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.91	67	46897	12	1	6	5	30
ASE_00437	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.67	68	79300	36	3	30	3	67
ASE_00441	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	64	64187	14	2	8	4	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.81	0.79	0.84	88	64156	21	4	13	4	24
ASE_00451	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.88	92	70771	17	4	9	4	33
RFA_00599	Telomerase-vert links to Rfam database...	0.86	0.82	0.90	91	101374	19	3	7	9	20
RFA_00601	Telomerase-vert links to Rfam database...	0.80	0.74	0.88	84	99139	25	3	9	13	30
RFA_00602	Telomerase-vert links to Rfam database...	0.79	0.72	0.87	84	101378	22	2	11	9	32

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Performance of Mastr(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for Mastr(seed)

Total Base Pair Counts
Total TP	0
Total TN	8777144
Total FP	0
Total FP CONTRA	0
Total FP INCONS	0
Total FP COMP	0
Total FN	15670

Total Scores
MCC	0.000
Average MCC ± 95% Confidence Intervals	0.000 ± 0.000
Sensitivity	0.000
Positive Predictive Value	0.000
Nr of predictions	148

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2. Individual counts for Mastr(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	97
ASE_00005	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	117
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47586	0	0	0	0	93
ASE_00012	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73920	0	0	0	0	123
ASE_00018	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80601	0	0	0	0	134
ASE_00020	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73920	0	0	0	0	126
ASE_00021	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	104196	0	0	0	0	160
ASE_00022	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	83028	0	0	0	0	124
ASE_00028	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84666	0	0	0	0	126
ASE_00035	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	118
ASE_00037	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59340	0	0	0	0	110
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53628	0	0	0	0	101
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	108
ASE_00042	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	90100	0	0	0	0	145
ASE_00044	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	89
ASE_00068	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	37675	0	0	0	0	85
ASE_00074	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67896	0	0	0	0	119
ASE_00077	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	86
ASE_00078	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	83
ASE_00081	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49770	0	0	0	0	97
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	116
ASE_00084	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53628	0	0	0	0	99
ASE_00090	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55611	0	0	0	0	101
ASE_00092	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63546	0	0	0	0	113
ASE_00099	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64620	0	0	0	0	120
ASE_00104	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	119
ASE_00105	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	111
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60726	0	0	0	0	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	108
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	82
ASE_00129	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	111
ASE_00131	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	85
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63190	0	0	0	0	109
ASE_00138	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	81
ASE_00142	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67161	0	0	0	0	122
ASE_00146	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70876	0	0	0	0	124
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	73
ASE_00170	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48828	0	0	0	0	93
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58996	0	0	0	0	106
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44253	0	0	0	0	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51360	0	0	0	0	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	106
ASE_00182	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84255	0	0	0	0	136
ASE_00183	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61425	0	0	0	0	113
ASE_00184	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	102
ASE_00185	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73536	0	0	0	0	128
ASE_00186	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79003	0	0	0	0	132
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	90
ASE_00197	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	89253	0	0	0	0	145
ASE_00198	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52650	0	0	0	0	102
ASE_00203	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46665	0	0	0	0	96
ASE_00212	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	93961	0	0	0	0	148
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56280	0	0	0	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	99
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	90
ASE_00221	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64620	0	0	0	0	117
ASE_00228	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	86
ASE_00229	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42486	0	0	0	0	87
ASE_00231	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	96
ASE_00232	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	84
ASE_00234	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75466	0	0	0	0	129
ASE_00238	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	114
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43956	0	0	0	0	87
ASE_00242	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	112
ASE_00248	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62481	0	0	0	0	114
ASE_00254	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	36856	0	0	0	0	82
ASE_00255	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	74691	0	0	0	0	130
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51040	0	0	0	0	97
ASE_00263	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	120
ASE_00267	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	88
ASE_00270	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	72390	0	0	0	0	128
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55611	0	0	0	0	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	91
ASE_00279	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53301	0	0	0	0	101
ASE_00280	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52003	0	0	0	0	98
ASE_00281	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44551	0	0	0	0	88
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77815	0	0	0	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61776	0	0	0	0	107
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58311	0	0	0	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	69006	0	0	0	0	122
ASE_00286	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46665	0	0	0	0	92
ASE_00287	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54946	0	0	0	0	103
ASE_00292	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	81810	0	0	0	0	138
ASE_00294	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	114481	0	0	0	0	171
ASE_00296	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	91806	0	0	0	0	145
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52975	0	0	0	0	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67528	0	0	0	0	113
ASE_00318	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	80200	0	0	0	0	118
ASE_00328	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	72771	0	0	0	0	112
ASE_00332	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	81810	0	0	0	0	138
ASE_00335	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	75466	0	0	0	0	116
ASE_00340	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	85
ASE_00342	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62481	0	0	0	0	115
ASE_00353	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	107
ASE_00361	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75466	0	0	0	0	127
ASE_00362	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	91
ASE_00363	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51360	0	0	0	0	94
ASE_00364	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	105
ASE_00366	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58653	0	0	0	0	98
ASE_00367	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	86
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00372	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52003	0	0	0	0	100
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44850	0	0	0	0	88
ASE_00376	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56953	0	0	0	0	105
ASE_00377	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	107
ASE_00379	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	89
ASE_00382	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00383	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00384	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	92
ASE_00386	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50403	0	0	0	0	96
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45753	0	0	0	0	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42195	0	0	0	0	85
ASE_00393	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	93
ASE_00394	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	93
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41616	0	0	0	0	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41616	0	0	0	0	83
ASE_00397	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00398	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	104
ASE_00400	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	106
ASE_00401	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77028	0	0	0	0	126
ASE_00402	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42486	0	0	0	0	85
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	85
ASE_00406	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48828	0	0	0	0	94
ASE_00411	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49455	0	0	0	0	89
ASE_00412	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58311	0	0	0	0	105
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44551	0	0	0	0	81
ASE_00415	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54946	0	0	0	0	103
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77421	0	0	0	0	127
ASE_00419	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54946	0	0	0	0	103
ASE_00422	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	94
ASE_00423	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56953	0	0	0	0	109
ASE_00428	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	76636	0	0	0	0	125
ASE_00430	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	97
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79401	0	0	0	0	135
ASE_00441	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	112
ASE_00448	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	112
ASE_00451	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70876	0	0	0	0	125
RFA_00599	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	111
RFA_00601	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	99235	0	0	0	0	114
RFA_00602	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	116

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of PETfold_pre2.0(20) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(20)

2. Individual counts for PETfold_pre2.0(20) [ download as .csv ]

Performance of Mastr(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for Mastr(seed)

2. Individual counts for Mastr(seed) [ download as .csv ]