CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

Home

Methods

Datasets

Rankings

RNA 2D Atlas

Help

FAQ

Contact us

RSS feeds

Twitter

Overview

Metric	PETfold_pre2.0(20)		MaxExpect
MCC	0.735	>	0.587
Average MCC ± 95% Confidence Intervals	0.736 ± 0.013	>	0.585 ± 0.020
Sensitivity	0.652	>	0.561
Positive Predictive Value	0.829	>	0.615
Total TP	13960	>	12016
Total TN	12417161	>	12414470
Total FP	3971	<	8698
Total FP CONTRA	816	<	993
Total FP INCONS	2069	<	6527
Total FP COMP	1086	<	1178
Total FN	7455	<	9399
P-value	3.56938820447e-08

^top

Performance plots

Comparison of performance of PETfold_pre2.0(20) and MaxExpect. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PETfold_pre2.0(20) and MaxExpect).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for PETfold_pre2.0(20) and MaxExpect).
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(20) and MaxExpect. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PETfold_pre2.0(20) and MaxExpect).

^top

Performance of PETfold_pre2.0(20) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(20)

Total Base Pair Counts
Total TP	13960
Total TN	12417161
Total FP	3971
Total FP CONTRA	816
Total FP INCONS	2069
Total FP COMP	1086
Total FN	7455

Total Scores
MCC	0.735
Average MCC ± 95% Confidence Intervals	0.736 ± 0.013
Sensitivity	0.652
Positive Predictive Value	0.829
Nr of predictions	204

^top

2. Individual counts for PETfold_pre2.0(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.80	55	47826	18	1	13	4	42
ASE_00005	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	76	57884	14	3	7	4	41
ASE_00006	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.80	57	47515	17	1	13	3	36
ASE_00007	RNaseP_bact_a links to Rfam database...	0.84	0.82	0.87	90	59581	19	4	10	5	20
ASE_00012	RNaseP_bact_a links to Rfam database...	0.70	0.64	0.77	79	73818	28	5	18	5	44
ASE_00018	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.87	91	80496	18	5	9	4	43
ASE_00020	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.83	67	73839	20	7	7	6	59
ASE_00021	RNaseP_bact_a links to Rfam database...	0.58	0.48	0.72	76	104090	33	7	23	3	84
ASE_00022	RNaseP_bact_b links to Rfam database...	0.77	0.71	0.85	88	82924	25	3	13	9	36
ASE_00028	RNaseP_bact_b links to Rfam database...	0.74	0.65	0.85	82	84569	23	3	12	8	44
ASE_00035	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.85	87	70398	23	4	11	8	31
ASE_00037	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	90	59239	16	4	7	5	20
ASE_00038	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	72	53546	15	3	7	5	29
ASE_00040	RNaseP_bact_a links to Rfam database...	0.82	0.72	0.92	96	78899	12	2	6	4	37
ASE_00041	RNaseP_bact_a links to Rfam database...	0.82	0.81	0.84	87	57527	19	2	14	3	21
ASE_00042	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.79	83	89995	27	3	19	5	62
ASE_00044	RNaseP_bact_a links to Rfam database...	0.89	0.88	0.90	92	54513	13	4	6	3	13
ASE_00064	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.85	66	45373	18	3	9	6	23
ASE_00068	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	46	37614	18	5	10	3	39
ASE_00074	RNaseP_bact_a links to Rfam database...	0.84	0.79	0.90	94	67792	15	4	6	5	25
ASE_00075	RNaseP_bact_a links to Rfam database...	0.60	0.48	0.76	78	108708	30	6	19	5	84
ASE_00077	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.87	72	45067	17	5	6	6	14
ASE_00078	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	71	42991	16	3	6	7	12
ASE_00080	RNaseP_bact_a links to Rfam database...	0.46	0.37	0.58	46	71551	38	4	30	4	77
ASE_00081	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	70	49693	11	1	6	4	27
ASE_00082	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.81	64	70421	23	3	12	8	52
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.90	71	62402	11	4	4	3	39
ASE_00084	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.80	65	53547	20	5	11	4	34
ASE_00087	RNaseP_bact_a links to Rfam database...	0.64	0.47	0.89	67	88335	13	1	7	5	77
ASE_00090	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.90	73	55530	13	3	5	5	28
ASE_00092	RNaseP_bact_a links to Rfam database...	0.69	0.58	0.82	65	63467	20	3	11	6	48
ASE_00099	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.91	94	64517	14	3	6	5	26
ASE_00104	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.90	96	64154	17	4	7	6	23
ASE_00105	RNaseP_bact_a links to Rfam database...	0.57	0.49	0.66	54	64179	33	7	21	5	57
ASE_00107	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.91	96	73047	14	4	6	4	31
ASE_00115	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.88	69	54537	12	2	7	3	32
ASE_00118	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	65	60648	18	4	9	5	37
ASE_00119	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.81	57	62765	16	5	8	3	51
ASE_00123	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	54	38438	14	4	7	3	31
ASE_00125	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	54	39277	16	2	7	7	34
ASE_00126	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.88	69	40392	16	4	5	7	13
ASE_00128	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	72	53222	11	2	5	4	28
ASE_00129	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	73	62754	12	4	4	4	38
ASE_00131	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.87	53	39279	15	3	5	7	32
ASE_00134	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	69	50320	18	4	10	4	26
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.71	60	63106	27	5	19	3	49
ASE_00136	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	70	48126	13	4	5	4	22
ASE_00137	RNaseP_bact_a links to Rfam database...	0.81	0.69	0.96	68	48445	7	2	1	4	30
ASE_00138	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	64	40397	14	2	7	5	17
ASE_00140	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.83	69	70793	20	7	7	6	56
ASE_00142	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.91	93	67059	15	3	6	6	29
ASE_00146	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.89	90	70775	16	4	7	5	34
ASE_00153	RNaseP_nuc links to Rfam database...	0.40	0.37	0.44	27	57569	41	7	27	7	46
ASE_00163	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.87	71	53219	15	4	7	4	22
ASE_00165	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.93	68	52902	10	2	3	5	33
ASE_00170	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	62	48748	24	5	13	6	31
ASE_00171	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.90	71	48437	14	3	5	6	23
ASE_00172	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.88	70	58916	14	5	5	4	36
ASE_00174	RNaseP_bact_a links to Rfam database...	0.66	0.55	0.79	60	60999	19	2	14	3	49
ASE_00175	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.84	68	59950	17	2	11	4	39
ASE_00179	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.85	67	44174	18	5	7	6	17
ASE_00180	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.85	70	51278	16	4	8	4	30
ASE_00181	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.82	63	57553	20	5	9	6	43
ASE_00182	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.88	72	84173	14	4	6	4	64
ASE_00183	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.89	73	61343	12	3	6	3	40
ASE_00184	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.86	69	54535	14	4	7	3	33
ASE_00185	RNaseP_bact_a links to Rfam database...	0.69	0.53	0.91	68	73461	12	3	4	5	60
ASE_00186	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	82	78902	24	2	17	5	50
ASE_00190	RNaseP_bact_b links to Rfam database...	0.73	0.64	0.82	58	45380	21	3	10	8	32
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.56	0.80	81	89152	26	2	18	6	64
ASE_00198	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	73	52569	11	3	5	3	29
ASE_00203	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	69	46589	11	2	5	4	27
ASE_00212	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.81	79	93864	22	2	16	4	69
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	71	56201	13	3	5	5	32
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.77	47	48455	18	4	10	4	52
ASE_00216	RNaseP_bact_a links to Rfam database...	0.90	0.84	0.96	69	39268	9	3	0	6	13
ASE_00217	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.87	69	40391	15	4	6	5	21
ASE_00221	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.90	93	64517	14	4	6	4	24
ASE_00228	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.83	59	46900	16	2	10	4	27
ASE_00229	RNaseP_bact_a links to Rfam database...	0.88	0.80	0.96	70	42413	7	2	1	4	17
ASE_00231	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.77	55	47824	22	0	16	6	41
ASE_00232	RNaseP_bact_a links to Rfam database...	0.88	0.82	0.95	69	38430	8	3	1	4	15
ASE_00234	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.79	67	75381	22	8	10	4	62
ASE_00238	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.77	63	64179	25	5	14	6	51
ASE_00241	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.87	73	43872	15	4	7	4	14
ASE_00242	RNaseP_bact_a links to Rfam database...	0.87	0.85	0.90	95	60969	17	4	7	6	17
ASE_00248	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	92	62376	18	4	9	5	22
ASE_00254	RNaseP_bact_a links to Rfam database...	0.90	0.82	0.99	67	36788	6	1	0	5	15
ASE_00255	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.67	71	74585	35	5	30	0	59
ASE_00257	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.80	64	50960	21	5	11	5	33
ASE_00263	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.89	73	70418	14	3	6	5	47
ASE_00267	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	69	45072	15	4	5	6	19
ASE_00270	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.77	56	72317	21	2	15	4	72
ASE_00274	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	62	55531	22	5	13	4	41
ASE_00277	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.79	61	48128	20	6	10	4	30
ASE_00279	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	70	53223	13	2	6	5	31
ASE_00280	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.79	63	51923	21	4	13	4	35
ASE_00281	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	71	44471	12	4	5	3	17
ASE_00282	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	72	77735	12	4	4	4	55
ASE_00283	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	71	61694	14	4	7	3	36
ASE_00284	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	72	58232	11	3	4	4	36
ASE_00285	RNaseP_bact_a links to Rfam database...	0.73	0.59	0.90	72	68926	12	2	6	4	50
ASE_00286	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.89	72	46584	14	5	4	5	20
ASE_00287	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	64	54864	24	4	14	6	39
ASE_00292	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	93	81703	18	5	9	4	45
ASE_00294	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.90	99	114371	15	4	7	4	72
ASE_00296	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.87	93	91699	19	5	9	5	52
ASE_00297	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.76	56	52901	21	4	14	3	42
ASE_00298	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	69	67447	15	3	9	3	44
ASE_00318	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.84	81	80103	23	3	13	7	37
ASE_00328	RNaseP_bact_b links to Rfam database...	0.79	0.76	0.83	85	72668	27	3	15	9	27
ASE_00332	RNaseP_bact_a links to Rfam database...	0.81	0.70	0.92	97	81705	13	2	6	5	41
ASE_00335	RNaseP_bact_b links to Rfam database...	0.77	0.72	0.83	83	75366	28	3	14	11	33
ASE_00340	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	61	45986	16	3	6	7	24
ASE_00342	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	98	62374	14	4	5	5	17
ASE_00353	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	72	57891	13	2	5	6	35
ASE_00361	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.89	68	75390	14	2	6	6	59
ASE_00362	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.87	67	48128	17	3	7	7	24
ASE_00363	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	65	51283	18	1	11	6	29
ASE_00364	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	69	54206	16	2	8	6	36
ASE_00366	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.85	68	58573	16	5	7	4	30
ASE_00367	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.91	69	42995	12	2	5	5	17
ASE_00369	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.88	74	55861	15	3	7	5	33
ASE_00370	RNaseP_bact_a links to Rfam database...	0.87	0.83	0.91	70	41828	12	2	5	5	14
ASE_00372	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	69	51926	14	1	7	6	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.86	0.80	0.92	70	44774	10	2	4	4	18
ASE_00376	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.84	67	56873	18	3	10	5	38
ASE_00377	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	70	57550	13	3	7	3	37
ASE_00379	RNaseP_bact_a links to Rfam database...	0.88	0.83	0.94	74	45977	11	1	4	6	15
ASE_00382	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.85	68	41825	20	3	9	8	16
ASE_00383	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.90	74	54533	14	3	5	6	31
ASE_00384	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	71	48436	14	3	6	5	21
ASE_00386	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	69	50325	12	2	7	3	27
ASE_00387	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	64	55866	19	2	13	4	40
ASE_00388	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.84	67	45673	20	3	10	7	22
ASE_00390	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	70	42116	13	3	6	4	15
ASE_00393	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.77	62	47814	24	3	16	5	31
ASE_00394	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.89	70	46892	15	4	5	6	23
ASE_00395	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.87	68	41538	14	4	6	4	16
ASE_00396	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.89	70	41537	14	4	5	5	13
ASE_00397	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	72	54535	14	3	5	6	33
ASE_00398	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	64	55866	18	3	12	3	40
ASE_00400	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	73	57888	15	3	6	6	33
ASE_00401	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.85	64	76953	16	4	7	5	62
ASE_00402	RNaseP_bact_a links to Rfam database...	0.81	0.79	0.83	67	42405	16	4	10	2	18
ASE_00403	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.92	71	55868	12	1	5	6	36
ASE_00404	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	70	42992	16	4	5	7	15
ASE_00406	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.83	66	48748	18	3	11	4	28
ASE_00411	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.71	60	49371	28	7	17	4	29
ASE_00412	RNaseP_bact_a links to Rfam database...	0.61	0.54	0.70	57	58229	28	5	20	3	48
ASE_00413	RNaseP_bact_a links to Rfam database...	0.77	0.77	0.78	62	44472	24	6	11	7	19
ASE_00415	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.69	51	54872	26	2	21	3	52
ASE_00416	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.81	85	77316	25	4	16	5	42
ASE_00419	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.82	64	54868	18	4	10	4	39
ASE_00422	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.92	69	46896	12	0	6	6	25
ASE_00423	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	81	56855	22	2	15	5	28
ASE_00428	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.81	88	76528	24	6	14	4	37
ASE_00430	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.91	67	46897	12	1	6	5	30
ASE_00437	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.67	68	79300	36	3	30	3	67
ASE_00441	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	64	64187	14	2	8	4	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.81	0.79	0.84	88	64156	21	4	13	4	24
ASE_00451	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.88	92	70771	17	4	9	4	33
RFA_00599	Telomerase-vert links to Rfam database...	0.86	0.82	0.90	91	101374	19	3	7	9	20
RFA_00601	Telomerase-vert links to Rfam database...	0.80	0.74	0.88	84	99139	25	3	9	13	30
RFA_00602	Telomerase-vert links to Rfam database...	0.79	0.72	0.87	84	101378	22	2	11	9	32
TMR_00017	tmRNA links to Rfam database...	0.74	0.61	0.90	62	67092	15	2	5	8	40
TMR_00018	tmRNA links to Rfam database...	0.60	0.53	0.67	49	64547	31	9	15	7	43
TMR_00038	tmRNA links to Rfam database...	0.61	0.54	0.70	59	71169	31	5	20	6	51
TMR_00042	tmRNA links to Rfam database...	0.63	0.53	0.74	52	62765	19	5	13	1	46
TMR_00046	tmRNA links to Rfam database...	0.42	0.38	0.47	36	62759	42	7	33	2	60
TMR_00048	tmRNA links to Rfam database...	0.61	0.54	0.69	51	64906	30	8	15	7	44
TMR_00080	tmRNA links to Rfam database...	0.66	0.60	0.73	58	70420	26	10	12	4	38
TMR_00082	tmRNA links to Rfam database...	0.59	0.49	0.70	47	67829	27	7	13	7	49
TMR_00123	tmRNA links to Rfam database...	0.68	0.54	0.85	55	66365	18	3	7	8	46
TMR_00137	tmRNA links to Rfam database...	0.68	0.63	0.74	56	60999	29	8	12	9	33
TMR_00142	tmRNA links to Rfam database...	0.46	0.42	0.51	43	70792	44	12	29	3	59
TMR_00207	tmRNA links to Rfam database...	0.66	0.52	0.84	54	72326	22	2	8	12	49
TMR_00257	tmRNA links to Rfam database...	0.73	0.61	0.87	60	67092	18	4	5	9	38
TMR_00271	tmRNA links to Rfam database...	0.58	0.49	0.69	45	64196	23	9	11	3	46
TMR_00332	tmRNA links to Rfam database...	0.71	0.61	0.83	60	67089	21	3	9	9	39
TMR_00366	tmRNA links to Rfam database...	0.48	0.45	0.52	45	67810	45	10	31	4	55
TMR_00378	tmRNA links to Rfam database...	0.45	0.41	0.48	40	67813	48	10	33	5	57
TMR_00399	tmRNA links to Rfam database...	0.66	0.62	0.71	58	64898	36	6	18	12	36
TMR_00404	tmRNA links to Rfam database...	0.52	0.46	0.60	42	67458	32	11	17	4	50
TMR_00427	tmRNA links to Rfam database...	0.60	0.49	0.74	48	67463	20	9	8	3	49
TMR_00443	tmRNA links to Rfam database...	0.81	0.71	0.93	74	67081	13	2	4	7	30
TMR_00451	tmRNA links to Rfam database...	0.59	0.54	0.64	48	63471	38	14	13	11	41
TMR_00458	tmRNA links to Rfam database...	0.69	0.61	0.77	57	63472	24	10	7	7	36
TMR_00469	tmRNA links to Rfam database...	0.73	0.64	0.84	64	64544	18	7	5	6	36
TMR_00472	tmRNA links to Rfam database...	0.67	0.61	0.73	59	64539	31	11	11	9	38
TMR_00519	tmRNA links to Rfam database...	0.63	0.56	0.72	53	63116	33	8	13	12	42
TMR_00520	tmRNA links to Rfam database...	0.65	0.58	0.74	57	63113	28	3	17	8	42
TMR_00522	tmRNA links to Rfam database...	0.60	0.53	0.68	51	63115	31	7	17	7	46
TMR_00528	tmRNA links to Rfam database...	0.50	0.45	0.56	44	63111	40	12	23	5	53
TMR_00540	tmRNA links to Rfam database...	0.66	0.60	0.73	62	73451	28	7	16	5	42
TMR_00568	tmRNA links to Rfam database...	0.71	0.66	0.76	65	60641	29	2	18	9	34
TMR_00571	tmRNA links to Rfam database...	0.74	0.69	0.79	68	60640	27	2	16	9	31
TMR_00580	tmRNA links to Rfam database...	0.73	0.67	0.80	67	60642	26	5	12	9	33
TMR_00584	tmRNA links to Rfam database...	0.78	0.70	0.87	68	60997	19	2	8	9	29
TMR_00586	tmRNA links to Rfam database...	0.74	0.68	0.81	66	60994	23	5	10	8	31
TMR_00616	tmRNA links to Rfam database...	0.69	0.62	0.76	61	67081	25	9	10	6	38
TMR_00699	tmRNA links to Rfam database...	0.70	0.56	0.88	57	67096	13	1	7	5	45
TMR_00702	tmRNA links to Rfam database...	0.61	0.50	0.75	50	67094	24	4	13	7	50
TMR_00703	tmRNA links to Rfam database...	0.71	0.60	0.84	59	67458	17	2	9	6	40

^top

Performance of MaxExpect - scored lower in this pairwise comparison

1. Total counts & total scores for MaxExpect

Total Base Pair Counts
Total TP	12016
Total TN	12414470
Total FP	8698
Total FP CONTRA	993
Total FP INCONS	6527
Total FP COMP	1178
Total FN	9399

Total Scores
MCC	0.587
Average MCC ± 95% Confidence Intervals	0.585 ± 0.020
Sensitivity	0.561
Positive Predictive Value	0.615
Nr of predictions	204

^top

2. Individual counts for MaxExpect [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.74	67	47804	25	9	15	1	30
ASE_00005	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.75	67	57881	28	0	22	6	50
ASE_00006	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.55	51	47494	47	10	31	6	42
ASE_00007	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.79	75	59590	27	0	20	7	35
ASE_00012	RNaseP_bact_a links to Rfam database...	0.50	0.44	0.57	54	73825	45	2	39	4	69
ASE_00018	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	69	80479	55	1	52	2	65
ASE_00020	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.64	72	73807	43	6	35	2	54
ASE_00021	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.68	86	104069	48	4	37	7	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.49	0.45	0.54	56	82924	54	4	44	6	68
ASE_00028	RNaseP_bact_b links to Rfam database...	0.72	0.69	0.76	87	84551	37	5	23	9	39
ASE_00035	RNaseP_bact_a links to Rfam database...	0.39	0.36	0.42	42	70400	65	4	54	7	76
ASE_00037	RNaseP_bact_a links to Rfam database...	0.45	0.40	0.50	44	59252	47	0	44	3	66
ASE_00038	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.81	71	53540	25	2	15	8	30
ASE_00040	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	66	78886	58	3	48	7	67
ASE_00041	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.48	45	57536	52	4	45	3	63
ASE_00042	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.52	66	89972	66	2	60	4	79
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.73	0.74	77	54511	32	4	23	5	28
ASE_00064	RNaseP_bact_a links to Rfam database...	0.39	0.39	0.38	35	45359	64	6	51	7	54
ASE_00068	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	48	37605	27	2	20	5	37
ASE_00074	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	61	67782	55	4	49	2	58
ASE_00075	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.75	102	108675	41	2	32	7	60
ASE_00077	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.58	46	45071	39	4	29	6	40
ASE_00078	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.79	55	43001	20	1	14	5	28
ASE_00080	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	66	71521	49	6	38	5	57
ASE_00081	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.87	69	49691	11	1	9	1	28
ASE_00082	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	85	70403	25	0	12	13	31
ASE_00083	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	75	62385	26	2	19	5	35
ASE_00084	RNaseP_bact_a links to Rfam database...	0.78	0.75	0.82	74	53538	21	1	15	5	25
ASE_00087	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.77	93	88289	34	1	27	6	51
ASE_00090	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.67	68	55509	41	4	30	7	33
ASE_00092	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	80	63447	23	3	16	4	33
ASE_00099	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	84	64522	19	0	14	5	36
ASE_00104	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.76	78	64158	28	2	23	3	41
ASE_00105	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	45	64166	58	6	44	8	66
ASE_00107	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	88	73041	26	1	23	2	39
ASE_00115	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	69	54519	35	4	23	8	32
ASE_00118	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	48	60632	49	3	43	3	54
ASE_00119	RNaseP_bact_a links to Rfam database...	0.82	0.81	0.83	87	62730	20	2	16	2	21
ASE_00123	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.56	43	38426	39	2	32	5	42
ASE_00125	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.79	58	39267	23	0	15	8	30
ASE_00126	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.84	66	40391	19	1	12	6	16
ASE_00128	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.80	71	53212	26	1	17	8	29
ASE_00129	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.75	77	62733	30	3	22	5	34
ASE_00131	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	50	39265	33	1	24	8	35
ASE_00134	RNaseP_bact_a links to Rfam database...	0.40	0.41	0.40	39	50305	62	8	51	3	56
ASE_00135	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.68	69	63089	39	1	31	7	40
ASE_00136	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.83	70	48121	22	0	14	8	22
ASE_00137	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.67	61	48425	35	1	29	5	37
ASE_00138	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.64	48	40395	29	7	20	2	33
ASE_00140	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.75	80	70770	29	4	22	3	45
ASE_00142	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.74	79	67054	32	3	25	4	43
ASE_00146	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.69	71	70773	35	1	31	3	53
ASE_00153	RNaseP_nuc links to Rfam database...	0.57	0.59	0.54	43	57551	71	8	28	35	30
ASE_00163	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.33	28	53217	64	4	52	8	65
ASE_00165	RNaseP_bact_a links to Rfam database...	0.45	0.45	0.46	45	52878	53	5	47	1	56
ASE_00170	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.77	63	48746	25	2	17	6	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.74	66	48427	24	6	17	1	28
ASE_00172	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.78	73	58902	27	1	20	6	33
ASE_00174	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.51	53	60972	52	8	42	2	56
ASE_00175	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.73	71	59934	32	2	24	6	36
ASE_00179	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.59	48	44171	34	5	29	0	36
ASE_00180	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.73	68	51267	30	7	18	5	32
ASE_00181	RNaseP_bact_a links to Rfam database...	0.70	0.64	0.76	68	57540	27	3	19	5	38
ASE_00182	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.61	79	84126	53	5	45	3	57
ASE_00183	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.75	76	61324	31	0	25	6	37
ASE_00184	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	72	54516	30	1	26	3	30
ASE_00185	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.81	90	73425	27	1	20	6	38
ASE_00186	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.72	82	78889	39	3	29	7	50
ASE_00190	RNaseP_bact_b links to Rfam database...	0.60	0.57	0.63	51	45370	35	3	27	5	39
ASE_00197	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.64	82	89125	52	2	44	6	63
ASE_00198	RNaseP_bact_a links to Rfam database...	0.84	0.77	0.91	79	52563	14	2	6	6	23
ASE_00203	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.75	67	46576	28	4	18	6	29
ASE_00212	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.65	84	93832	50	1	44	5	64
ASE_00214	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.82	80	56182	27	3	15	9	23
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	57	48425	38	5	29	4	42
ASE_00216	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	44	39262	35	9	25	1	38
ASE_00217	RNaseP_bact_a links to Rfam database...	0.38	0.34	0.41	31	40395	49	5	39	5	59
ASE_00221	RNaseP_bact_a links to Rfam database...	0.63	0.56	0.71	65	64529	30	1	25	4	52
ASE_00228	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	46	46885	42	11	29	2	40
ASE_00229	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.78	60	42409	23	1	16	6	27
ASE_00231	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.64	57	47806	35	4	28	3	39
ASE_00232	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	55	38419	32	10	19	3	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.66	71	75358	43	2	35	6	58
ASE_00238	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.77	75	64163	29	2	21	6	39
ASE_00241	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	47	43879	35	1	29	5	40
ASE_00242	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.67	67	60975	34	1	32	1	45
ASE_00248	RNaseP_bact_a links to Rfam database...	0.40	0.36	0.44	41	62388	53	2	50	1	73
ASE_00254	RNaseP_bact_a links to Rfam database...	0.38	0.35	0.41	29	36786	46	5	36	5	53
ASE_00255	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	70	74572	52	4	45	3	60
ASE_00257	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.61	54	50951	41	3	32	6	43
ASE_00263	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.71	81	70386	35	3	30	2	39
ASE_00267	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.70	54	45073	32	1	22	9	34
ASE_00270	RNaseP_bact_a links to Rfam database...	0.81	0.78	0.84	100	72271	24	1	18	5	28
ASE_00274	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.68	59	55524	30	5	23	2	44
ASE_00277	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.42	39	48113	55	9	44	2	52
ASE_00279	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	48	53207	48	7	39	2	53
ASE_00280	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	48	51914	45	8	33	4	50
ASE_00281	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.76	61	44471	28	0	19	9	27
ASE_00282	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	56	77690	69	5	64	0	71
ASE_00283	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.79	77	61678	27	3	18	6	30
ASE_00284	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.71	71	58211	37	4	25	8	37
ASE_00285	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.86	92	68899	25	3	12	10	30
ASE_00286	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	35	46581	58	2	47	9	57
ASE_00287	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	70	54854	28	2	20	6	33
ASE_00292	RNaseP_bact_a links to Rfam database...	0.47	0.43	0.52	60	81694	59	1	55	3	78
ASE_00294	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.81	113	114342	31	0	26	5	58
ASE_00296	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	59	91680	69	7	60	2	86
ASE_00297	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.77	71	52883	24	3	18	3	27
ASE_00298	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	56	67425	50	1	46	3	57
ASE_00318	RNaseP_bact_b links to Rfam database...	0.64	0.63	0.65	74	80087	44	14	25	5	44
ASE_00328	RNaseP_bact_b links to Rfam database...	0.67	0.63	0.73	70	72675	40	4	22	14	42
ASE_00332	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	68	81683	62	2	57	3	70
ASE_00335	RNaseP_bact_b links to Rfam database...	0.62	0.58	0.66	67	75364	42	6	29	7	49
ASE_00340	RNaseP_bact_a links to Rfam database...	0.74	0.74	0.73	63	45970	27	7	16	4	22
ASE_00342	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.67	67	62381	34	1	32	1	48
ASE_00353	RNaseP_bact_a links to Rfam database...	0.57	0.57	0.58	61	57864	49	4	41	4	46
ASE_00361	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.56	67	75347	55	10	42	3	60
ASE_00362	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.58	53	48114	41	2	36	3	38
ASE_00363	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.60	52	51274	41	2	32	7	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	74	54190	29	1	20	8	31
ASE_00366	RNaseP_bact_a links to Rfam database...	0.41	0.42	0.41	41	58553	60	6	53	1	57
ASE_00367	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	44	42997	38	1	29	8	42
ASE_00369	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.64	67	55841	39	1	36	2	40
ASE_00370	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.82	61	41831	22	1	12	9	23
ASE_00372	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.71	65	51911	33	5	22	6	35
ASE_00374	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.72	63	44763	26	3	21	2	25
ASE_00376	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	67	56858	30	1	27	2	38
ASE_00377	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	75	57531	30	3	21	6	32
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.63	50	45977	39	3	26	10	39
ASE_00382	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.70	55	41826	29	6	18	5	29
ASE_00383	RNaseP_bact_a links to Rfam database...	0.46	0.42	0.50	44	54527	47	3	41	3	61
ASE_00384	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	54	48430	37	2	30	5	38
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	49	50317	39	7	30	2	47
ASE_00387	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.73	69	55851	30	1	24	5	35
ASE_00388	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.67	49	45680	34	1	23	10	40
ASE_00390	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	51	42115	39	0	29	10	34
ASE_00393	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.51	43	47810	49	2	40	7	50
ASE_00394	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	71	46882	23	2	16	5	22
ASE_00395	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.68	55	41535	32	2	24	6	29
ASE_00396	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.58	43	41542	36	2	29	5	40
ASE_00397	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.60	59	54517	43	4	35	4	46
ASE_00398	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	60	55854	39	1	30	8	44
ASE_00400	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	67	57874	34	1	28	5	39
ASE_00401	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	79	76910	40	5	34	1	47
ASE_00402	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.77	58	42411	22	2	15	5	27
ASE_00403	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.47	45	55850	54	1	49	4	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	42	42998	39	1	30	8	43
ASE_00406	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.87	71	48746	21	0	11	10	23
ASE_00411	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	41	49376	45	5	33	7	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.53	48	58220	47	5	38	4	57
ASE_00413	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.63	53	44467	33	10	21	2	28
ASE_00415	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.66	67	54845	36	6	28	2	36
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77304	41	1	31	9	42
ASE_00419	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.85	82	54849	17	5	10	2	21
ASE_00422	RNaseP_bact_a links to Rfam database...	0.78	0.77	0.79	72	46880	26	5	14	7	22
ASE_00423	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.58	63	56845	45	8	37	0	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.78	0.75	0.81	94	76520	29	3	19	7	31
ASE_00430	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	72	46876	30	5	18	7	25
ASE_00437	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.49	55	79288	62	0	58	4	80
ASE_00441	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.84	83	64162	21	1	15	5	29
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.22	25	64149	93	7	80	6	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.68	75	70765	41	3	33	5	50
RFA_00599	Telomerase-vert links to Rfam database...	0.72	0.72	0.71	80	101363	56	10	22	24	31
RFA_00601	Telomerase-vert links to Rfam database...	0.49	0.52	0.46	59	99108	82	28	40	14	55
RFA_00602	Telomerase-vert links to Rfam database...	0.66	0.68	0.64	79	101352	64	17	27	20	37
TMR_00017	tmRNA links to Rfam database...	0.51	0.49	0.53	50	67067	50	10	34	6	52
TMR_00018	tmRNA links to Rfam database...	0.37	0.37	0.37	34	64527	63	11	48	4	58
TMR_00038	tmRNA links to Rfam database...	0.22	0.21	0.23	23	71154	80	9	67	4	87
TMR_00042	tmRNA links to Rfam database...	0.35	0.35	0.36	34	62740	64	3	58	3	64
TMR_00046	tmRNA links to Rfam database...	0.28	0.28	0.28	27	62740	72	11	57	4	69
TMR_00048	tmRNA links to Rfam database...	0.23	0.24	0.23	23	64880	83	15	62	6	72
TMR_00080	tmRNA links to Rfam database...	0.41	0.40	0.42	38	70409	53	14	39	0	58
TMR_00082	tmRNA links to Rfam database...	0.70	0.68	0.71	65	67805	31	8	18	5	31
TMR_00123	tmRNA links to Rfam database...	0.40	0.39	0.41	39	66335	61	11	45	5	62
TMR_00137	tmRNA links to Rfam database...	0.22	0.21	0.22	19	60990	74	9	57	8	70
TMR_00142	tmRNA links to Rfam database...	0.50	0.51	0.50	52	70771	65	10	43	12	50
TMR_00207	tmRNA links to Rfam database...	0.29	0.28	0.30	29	72294	71	7	60	4	74
TMR_00257	tmRNA links to Rfam database...	0.12	0.11	0.12	11	67072	82	7	71	4	87
TMR_00271	tmRNA links to Rfam database...	0.64	0.60	0.67	55	64179	37	6	21	10	36
TMR_00332	tmRNA links to Rfam database...	0.49	0.43	0.54	43	67082	41	7	29	5	56
TMR_00366	tmRNA links to Rfam database...	0.51	0.51	0.52	51	67798	58	12	35	11	49
TMR_00378	tmRNA links to Rfam database...	0.26	0.25	0.28	24	67810	73	14	48	11	73
TMR_00399	tmRNA links to Rfam database...	0.35	0.34	0.36	32	64892	62	12	44	6	62
TMR_00404	tmRNA links to Rfam database...	0.37	0.40	0.35	37	67422	80	26	43	11	55
TMR_00427	tmRNA links to Rfam database...	0.34	0.32	0.36	31	67441	61	13	43	5	66
TMR_00443	tmRNA links to Rfam database...	0.54	0.51	0.57	53	67068	47	11	29	7	51
TMR_00451	tmRNA links to Rfam database...	0.18	0.19	0.18	17	63449	84	20	60	4	72
TMR_00458	tmRNA links to Rfam database...	0.46	0.46	0.46	43	63453	57	9	41	7	50
TMR_00469	tmRNA links to Rfam database...	0.53	0.53	0.52	53	64519	52	17	31	4	47
TMR_00472	tmRNA links to Rfam database...	0.42	0.40	0.44	39	64532	60	8	41	11	58
TMR_00519	tmRNA links to Rfam database...	0.39	0.39	0.40	37	63098	66	12	43	11	58
TMR_00520	tmRNA links to Rfam database...	0.52	0.52	0.53	51	63094	55	14	31	10	48
TMR_00522	tmRNA links to Rfam database...	0.39	0.39	0.40	38	63095	66	13	44	9	59
TMR_00528	tmRNA links to Rfam database...	0.30	0.29	0.32	28	63102	70	16	44	10	69
TMR_00540	tmRNA links to Rfam database...	0.44	0.41	0.47	43	73444	60	11	38	11	61
TMR_00568	tmRNA links to Rfam database...	0.36	0.34	0.38	34	60636	62	4	52	6	65
TMR_00571	tmRNA links to Rfam database...	0.66	0.61	0.71	60	60642	38	2	22	14	39
TMR_00580	tmRNA links to Rfam database...	0.68	0.64	0.72	64	60637	36	2	23	11	36
TMR_00584	tmRNA links to Rfam database...	0.59	0.57	0.61	55	60985	47	3	32	12	42
TMR_00586	tmRNA links to Rfam database...	0.50	0.49	0.51	48	60980	57	8	39	10	49
TMR_00616	tmRNA links to Rfam database...	0.41	0.40	0.41	40	67064	62	12	45	5	59
TMR_00699	tmRNA links to Rfam database...	0.49	0.44	0.55	45	67079	42	4	33	5	57
TMR_00702	tmRNA links to Rfam database...	0.39	0.36	0.42	36	67075	55	12	38	5	64
TMR_00703	tmRNA links to Rfam database...	0.50	0.49	0.52	49	67433	51	6	40	5	50

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of PETfold_pre2.0(20) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(20)

2. Individual counts for PETfold_pre2.0(20) [ download as .csv ]

Performance of MaxExpect - scored lower in this pairwise comparison

1. Total counts & total scores for MaxExpect

2. Individual counts for MaxExpect [ download as .csv ]