CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

Home

Methods

Datasets

Rankings

RNA 2D Atlas

Help

FAQ

Contact us

RSS feeds

Twitter

Overview

Metric	PETfold_pre2.0(seed)		RSpredict(20)
MCC	0.754	>	0.347
Average MCC ± 95% Confidence Intervals	0.754 ± 0.012	>	0.316 ± 0.028
Sensitivity	0.673	>	0.220
Positive Predictive Value	0.845	>	0.550
Total TP	14412	>	4715
Total TN	12416941	<	12425426
Total FP	3938	<	4369
Total FP CONTRA	946	>	554
Total FP INCONS	1707	<	3311
Total FP COMP	1285	>	504
Total FN	7003	<	16700
P-value	3.56938820447e-08

^top

Performance plots

Comparison of performance of PETfold_pre2.0(seed) and RSpredict(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and RSpredict(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and RSpredict(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and RSpredict(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and RSpredict(20)).

^top

Performance of PETfold_pre2.0(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(seed)

Total Base Pair Counts
Total TP	14412
Total TN	12416941
Total FP	3938
Total FP CONTRA	946
Total FP INCONS	1707
Total FP COMP	1285
Total FN	7003

Total Scores
MCC	0.754
Average MCC ± 95% Confidence Intervals	0.754 ± 0.012
Sensitivity	0.673
Positive Predictive Value	0.845
Nr of predictions	204

^top

2. Individual counts for PETfold_pre2.0(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	60	47823	17	2	10	5	37
ASE_00005	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	80	57879	16	4	7	5	37
ASE_00006	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.81	59	47513	19	2	12	5	34
ASE_00007	RNaseP_bact_a links to Rfam database...	0.88	0.86	0.90	95	59579	16	4	7	5	15
ASE_00012	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.85	88	73817	23	6	9	8	35
ASE_00018	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.87	94	80493	19	5	9	5	40
ASE_00020	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	68	73837	21	8	7	6	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.64	0.51	0.79	82	104092	30	7	15	8	78
ASE_00022	RNaseP_bact_b links to Rfam database...	0.83	0.76	0.90	94	82924	24	2	8	14	30
ASE_00028	RNaseP_bact_b links to Rfam database...	0.83	0.75	0.90	95	84561	22	2	8	12	31
ASE_00035	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	92	70395	21	4	9	8	26
ASE_00037	RNaseP_bact_a links to Rfam database...	0.90	0.88	0.92	97	59234	14	4	5	5	13
ASE_00038	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	53546	14	4	5	5	28
ASE_00040	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.91	97	78896	16	4	6	6	36
ASE_00041	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.85	88	57527	20	4	11	5	20
ASE_00042	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.81	87	89993	24	4	16	4	58
ASE_00044	RNaseP_bact_a links to Rfam database...	0.89	0.88	0.91	92	54514	14	4	5	5	13
ASE_00064	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	70	45371	15	4	6	5	19
ASE_00068	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.72	47	37610	20	4	14	2	38
ASE_00074	RNaseP_bact_a links to Rfam database...	0.87	0.83	0.92	99	67788	14	4	5	5	20
ASE_00075	RNaseP_bact_a links to Rfam database...	0.66	0.52	0.83	85	108709	27	6	11	10	77
ASE_00077	RNaseP_bact_a links to Rfam database...	0.84	0.83	0.86	71	45067	16	5	7	4	15
ASE_00078	RNaseP_bact_a links to Rfam database...	0.91	0.88	0.94	73	42993	12	3	2	7	10
ASE_00080	RNaseP_bact_a links to Rfam database...	0.47	0.38	0.58	47	71550	40	4	30	6	76
ASE_00081	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.89	73	49688	15	3	6	6	24
ASE_00082	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	66	70423	20	3	8	9	50
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	72	62399	16	4	6	6	38
ASE_00084	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	71	53546	16	4	7	5	28
ASE_00087	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.88	72	88328	16	4	6	6	72
ASE_00090	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	55529	15	4	5	6	28
ASE_00092	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.82	67	63464	21	6	9	6	46
ASE_00099	RNaseP_bact_a links to Rfam database...	0.87	0.83	0.92	99	64512	14	4	5	5	21
ASE_00104	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.91	98	64153	15	4	6	5	21
ASE_00105	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.67	56	64178	32	8	19	5	55
ASE_00107	RNaseP_bact_a links to Rfam database...	0.84	0.77	0.91	98	73045	15	4	6	5	29
ASE_00115	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	71	54535	14	4	5	5	30
ASE_00118	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.85	66	60648	18	4	8	6	36
ASE_00119	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.84	59	62765	15	5	6	4	49
ASE_00123	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	54	38438	16	4	7	5	31
ASE_00125	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	54	39275	16	4	7	5	34
ASE_00126	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.87	69	40391	16	4	6	6	13
ASE_00128	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.89	73	53219	14	4	5	5	27
ASE_00129	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.89	73	62753	14	4	5	5	38
ASE_00131	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	50	39279	16	4	7	5	35
ASE_00134	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	69	50321	18	4	9	5	26
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.71	60	63106	27	6	18	3	49
ASE_00136	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	72	48123	15	4	6	5	20
ASE_00137	RNaseP_bact_a links to Rfam database...	0.80	0.69	0.93	68	48443	10	3	2	5	30
ASE_00138	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.87	68	40392	15	5	5	5	13
ASE_00140	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	67	70794	21	9	6	6	58
ASE_00142	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.90	94	67056	17	4	7	6	28
ASE_00146	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.90	95	70770	16	4	7	5	29
ASE_00153	RNaseP_nuc links to Rfam database...	0.63	0.55	0.71	40	57574	20	3	13	4	33
ASE_00163	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	72	53219	15	5	5	5	21
ASE_00165	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.92	68	52901	12	3	3	6	33
ASE_00170	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	68	48746	19	5	9	5	25
ASE_00171	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	71	48436	15	4	5	6	23
ASE_00172	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	72	58914	15	5	5	5	34
ASE_00174	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.79	65	60993	22	4	13	5	44
ASE_00175	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	68	59948	20	5	10	5	39
ASE_00179	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.86	67	44175	14	5	6	3	17
ASE_00180	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	73	51277	15	5	5	5	27
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.80	66	57548	22	7	9	6	40
ASE_00182	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.88	72	84173	15	4	6	5	64
ASE_00183	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.88	73	61342	15	5	5	5	40
ASE_00184	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	54533	14	3	6	5	29
ASE_00185	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.87	69	73457	15	5	5	5	59
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	86	78897	26	4	16	6	46
ASE_00190	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.85	62	45378	20	2	9	9	28
ASE_00197	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.82	86	89148	24	4	15	5	59
ASE_00198	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	52568	15	4	5	6	29
ASE_00203	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	69	46587	14	4	5	5	27
ASE_00212	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	85	93860	21	4	12	5	63
ASE_00214	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.88	72	56198	16	5	5	6	31
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.49	0.72	49	48448	21	4	15	2	50
ASE_00216	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.97	70	39268	8	2	0	6	12
ASE_00217	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.89	74	40387	15	4	5	6	16
ASE_00221	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.90	95	64514	16	4	7	5	22
ASE_00228	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.90	65	46899	13	3	4	6	21
ASE_00229	RNaseP_bact_a links to Rfam database...	0.87	0.80	0.93	70	42411	10	2	3	5	17
ASE_00231	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.83	60	47823	17	2	10	5	36
ASE_00232	RNaseP_bact_a links to Rfam database...	0.90	0.83	0.97	70	38431	7	2	0	5	14
ASE_00234	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.82	68	75383	21	9	6	6	61
ASE_00238	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	64	64179	24	7	11	6	50
ASE_00241	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.88	72	43874	15	4	6	5	15
ASE_00242	RNaseP_bact_a links to Rfam database...	0.89	0.87	0.92	97	60969	15	4	5	6	15
ASE_00248	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	97	62375	15	4	5	6	17
ASE_00254	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.96	68	36785	9	2	1	6	14
ASE_00255	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.75	77	74588	31	5	21	5	53
ASE_00257	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.83	67	50959	19	5	9	5	30
ASE_00263	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	72	70418	15	5	5	5	48
ASE_00267	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	72	45069	14	3	6	5	16
ASE_00270	RNaseP_bact_a links to Rfam database...	0.59	0.45	0.77	57	72316	22	3	14	5	71
ASE_00274	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.80	65	55530	21	6	10	5	38
ASE_00277	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.82	62	48129	19	8	6	5	29
ASE_00279	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.86	70	53220	16	4	7	5	31
ASE_00280	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.83	68	51921	19	5	9	5	30
ASE_00281	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	71	44470	15	4	6	5	17
ASE_00282	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	73	77732	15	5	5	5	54
ASE_00283	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.88	72	61694	15	4	6	5	35
ASE_00284	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	72	58228	16	6	5	5	36
ASE_00285	RNaseP_bact_a links to Rfam database...	0.72	0.59	0.88	72	68924	15	4	6	5	50
ASE_00286	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	71	46584	15	4	6	5	21
ASE_00287	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	64	54864	23	3	15	5	39
ASE_00292	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.91	97	81703	16	4	6	6	41
ASE_00294	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	97	114373	16	4	7	5	74
ASE_00296	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.86	93	91698	20	5	10	5	52
ASE_00297	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.80	63	52896	21	6	10	5	35
ASE_00298	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	72	67446	15	6	4	5	41
ASE_00318	RNaseP_bact_b links to Rfam database...	0.81	0.74	0.90	87	80103	25	2	8	15	31
ASE_00328	RNaseP_bact_b links to Rfam database...	0.87	0.83	0.90	93	72668	24	2	8	14	19
ASE_00332	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.92	99	81702	14	4	5	5	39
ASE_00335	RNaseP_bact_b links to Rfam database...	0.85	0.79	0.90	92	75364	26	2	8	16	24
ASE_00340	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.89	62	45986	15	2	6	7	23
ASE_00342	RNaseP_bact_a links to Rfam database...	0.89	0.86	0.92	99	62373	14	4	5	5	16
ASE_00353	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	73	57887	15	5	5	5	34
ASE_00361	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	72	75384	15	4	6	5	55
ASE_00362	RNaseP_bact_a links to Rfam database...	0.84	0.79	0.89	72	48124	16	4	5	7	19
ASE_00363	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.84	69	51278	18	3	10	5	25
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.84	69	54203	18	5	8	5	36
ASE_00366	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.84	70	58570	18	6	7	5	28
ASE_00367	RNaseP_bact_a links to Rfam database...	0.87	0.85	0.89	73	42989	15	4	5	6	13
ASE_00369	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	73	55863	15	4	5	6	34
ASE_00370	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.88	70	41825	16	3	7	6	14
ASE_00372	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	71	51922	16	4	6	6	29
ASE_00374	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	71	44770	15	4	5	6	17
ASE_00376	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.87	71	56871	17	4	7	6	34
ASE_00377	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.84	70	57547	18	5	8	5	37
ASE_00379	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	72	45975	16	4	5	7	17
ASE_00382	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	72	41824	16	3	6	7	12
ASE_00383	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	73	54533	15	4	5	6	32
ASE_00384	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.87	71	48434	17	4	7	6	21
ASE_00386	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	73	50321	14	4	5	5	23
ASE_00387	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.80	64	55865	21	3	13	5	40
ASE_00388	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.86	69	45673	18	4	7	7	20
ASE_00390	RNaseP_bact_a links to Rfam database...	0.84	0.82	0.86	70	42114	17	3	8	6	15
ASE_00393	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	67	47813	21	4	11	6	26
ASE_00394	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	66	46894	15	3	8	4	27
ASE_00395	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	72	41535	15	4	5	6	12
ASE_00396	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.86	70	41535	16	5	6	5	13
ASE_00397	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	73	54533	15	4	5	6	32
ASE_00398	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.86	70	55864	17	4	7	6	34
ASE_00400	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	73	57888	15	4	5	6	33
ASE_00401	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.87	68	76950	16	5	5	6	58
ASE_00402	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	73	42404	15	3	6	6	12
ASE_00403	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	73	55863	15	4	5	6	34
ASE_00404	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.89	71	42991	15	4	5	6	14
ASE_00406	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.89	73	48746	14	4	5	5	21
ASE_00411	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	61	49370	29	10	14	5	28
ASE_00412	RNaseP_bact_a links to Rfam database...	0.64	0.57	0.72	60	58228	28	7	16	5	45
ASE_00413	RNaseP_bact_a links to Rfam database...	0.80	0.79	0.81	64	44472	22	7	8	7	17
ASE_00415	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.68	52	54869	29	3	22	4	51
ASE_00416	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	91	77313	22	6	11	5	36
ASE_00419	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.83	68	54864	19	7	7	5	35
ASE_00422	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	67	46895	13	1	8	4	27
ASE_00423	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.81	83	56851	25	4	15	6	26
ASE_00428	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	91	76528	22	6	11	5	34
ASE_00430	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	69	46896	11	2	4	5	28
ASE_00437	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.68	72	79295	39	4	30	5	63
ASE_00441	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	64	64185	18	4	8	6	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.88	94	64154	18	4	9	5	18
ASE_00451	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.91	98	70768	15	4	6	5	27
RFA_00599	Telomerase-vert links to Rfam database...	0.88	0.86	0.90	95	101370	21	3	7	11	16
RFA_00601	Telomerase-vert links to Rfam database...	0.87	0.84	0.89	96	99127	25	3	9	13	18
RFA_00602	Telomerase-vert links to Rfam database...	0.82	0.77	0.87	89	101373	22	3	10	9	27
TMR_00017	tmRNA links to Rfam database...	0.72	0.62	0.84	63	67086	20	6	6	8	39
TMR_00018	tmRNA links to Rfam database...	0.65	0.59	0.72	54	64545	29	8	13	8	38
TMR_00038	tmRNA links to Rfam database...	0.64	0.52	0.79	57	71181	21	6	9	6	53
TMR_00042	tmRNA links to Rfam database...	0.68	0.60	0.78	59	62759	23	7	10	6	39
TMR_00046	tmRNA links to Rfam database...	0.47	0.42	0.53	40	62760	41	6	29	6	56
TMR_00048	tmRNA links to Rfam database...	0.68	0.61	0.76	58	64904	24	7	11	6	37
TMR_00080	tmRNA links to Rfam database...	0.55	0.49	0.63	47	70425	35	10	18	7	49
TMR_00082	tmRNA links to Rfam database...	0.59	0.51	0.68	49	67824	32	9	14	9	47
TMR_00123	tmRNA links to Rfam database...	0.72	0.61	0.84	62	66356	21	7	5	9	39
TMR_00137	tmRNA links to Rfam database...	0.63	0.56	0.71	50	61005	32	8	12	12	39
TMR_00142	tmRNA links to Rfam database...	0.63	0.54	0.74	55	70802	27	4	15	8	47
TMR_00207	tmRNA links to Rfam database...	0.68	0.57	0.80	59	72316	24	7	8	9	44
TMR_00257	tmRNA links to Rfam database...	0.72	0.62	0.82	61	67087	22	7	6	9	37
TMR_00271	tmRNA links to Rfam database...	0.62	0.54	0.71	49	64192	32	7	13	12	42
TMR_00332	tmRNA links to Rfam database...	0.69	0.60	0.80	59	67087	25	6	9	10	40
TMR_00366	tmRNA links to Rfam database...	0.63	0.54	0.74	54	67823	28	3	16	9	46
TMR_00378	tmRNA links to Rfam database...	0.65	0.55	0.77	53	67827	26	3	13	10	44
TMR_00399	tmRNA links to Rfam database...	0.66	0.59	0.74	55	64906	26	9	10	7	39
TMR_00404	tmRNA links to Rfam database...	0.58	0.51	0.66	47	67457	35	6	18	11	45
TMR_00427	tmRNA links to Rfam database...	0.68	0.60	0.76	58	67452	26	11	7	8	39
TMR_00443	tmRNA links to Rfam database...	0.72	0.62	0.84	64	67085	19	6	6	7	40
TMR_00451	tmRNA links to Rfam database...	0.56	0.51	0.63	45	63474	37	13	14	10	44
TMR_00458	tmRNA links to Rfam database...	0.66	0.58	0.75	54	63474	29	8	10	11	39
TMR_00469	tmRNA links to Rfam database...	0.71	0.61	0.84	61	64547	20	6	6	8	39
TMR_00472	tmRNA links to Rfam database...	0.68	0.59	0.79	57	64548	23	7	8	8	40
TMR_00519	tmRNA links to Rfam database...	0.64	0.57	0.72	54	63115	29	9	12	8	41
TMR_00520	tmRNA links to Rfam database...	0.68	0.60	0.79	59	63115	25	7	9	9	40
TMR_00522	tmRNA links to Rfam database...	0.65	0.56	0.75	54	63118	28	6	12	10	43
TMR_00528	tmRNA links to Rfam database...	0.64	0.56	0.74	54	63117	28	6	13	9	43
TMR_00540	tmRNA links to Rfam database...	0.65	0.56	0.75	58	73459	25	9	10	6	46
TMR_00568	tmRNA links to Rfam database...	0.76	0.65	0.89	64	60654	17	1	7	9	35
TMR_00571	tmRNA links to Rfam database...	0.78	0.67	0.92	66	60654	16	1	5	10	33
TMR_00580	tmRNA links to Rfam database...	0.74	0.61	0.90	61	60658	17	2	5	10	39
TMR_00584	tmRNA links to Rfam database...	0.77	0.65	0.91	63	61006	14	2	4	8	34
TMR_00586	tmRNA links to Rfam database...	0.74	0.64	0.85	62	61002	19	5	6	8	35
TMR_00616	tmRNA links to Rfam database...	0.65	0.56	0.75	55	67088	24	8	10	6	44
TMR_00699	tmRNA links to Rfam database...	0.68	0.58	0.80	59	67087	23	6	9	8	43
TMR_00702	tmRNA links to Rfam database...	0.64	0.55	0.74	55	67087	27	3	16	8	45
TMR_00703	tmRNA links to Rfam database...	0.68	0.60	0.79	59	67453	23	7	9	7	40

^top

Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

Total Base Pair Counts
Total TP	4715
Total TN	12425426
Total FP	4369
Total FP CONTRA	554
Total FP INCONS	3311
Total FP COMP	504
Total FN	16700

Total Scores
MCC	0.347
Average MCC ± 95% Confidence Intervals	0.316 ± 0.028
Sensitivity	0.220
Positive Predictive Value	0.550
Nr of predictions	204

^top

2. Individual counts for RSpredict(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.89	48	47841	10	0	6	4	49
ASE_00005	RNaseP_bact_a links to Rfam database...	0.35	0.19	0.67	22	57937	11	0	11	0	95
ASE_00006	RNaseP_bact_a links to Rfam database...	0.28	0.13	0.60	12	47566	8	0	8	0	81
ASE_00007	RNaseP_bact_a links to Rfam database...	0.25	0.10	0.65	11	59668	6	0	6	0	99
ASE_00012	RNaseP_bact_a links to Rfam database...	0.16	0.07	0.42	8	73901	14	0	11	3	115
ASE_00018	RNaseP_bact_a links to Rfam database...	0.15	0.07	0.30	10	80568	23	0	23	0	124
ASE_00020	RNaseP_bact_a links to Rfam database...	0.32	0.21	0.50	26	73868	28	6	20	2	100
ASE_00021	RNaseP_bact_a links to Rfam database...	0.16	0.08	0.32	12	104159	28	0	25	3	148
ASE_00022	RNaseP_bact_b links to Rfam database...	0.51	0.44	0.61	54	82939	41	5	30	6	70
ASE_00028	RNaseP_bact_b links to Rfam database...	0.68	0.59	0.80	74	84573	27	1	18	8	52
ASE_00035	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.68	44	70435	26	3	18	5	74
ASE_00037	RNaseP_bact_a links to Rfam database...	0.27	0.17	0.43	19	59296	27	1	24	2	91
ASE_00038	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.19	5	53602	21	3	18	0	96
ASE_00040	RNaseP_bact_a links to Rfam database...	0.20	0.09	0.46	12	78977	14	0	14	0	121
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57611	19	1	18	0	108
ASE_00042	RNaseP_bact_a links to Rfam database...	0.23	0.12	0.47	17	90064	20	1	18	1	128
ASE_00044	RNaseP_bact_a links to Rfam database...	0.21	0.08	0.57	8	54601	9	0	6	3	97
ASE_00064	RNaseP_bact_a links to Rfam database...	0.19	0.11	0.33	10	45421	22	3	17	2	79
ASE_00068	RNaseP_bact_a links to Rfam database...	0.37	0.25	0.57	21	37638	21	1	15	5	64
ASE_00074	RNaseP_bact_a links to Rfam database...	0.23	0.13	0.41	15	67859	24	0	22	2	104
ASE_00075	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.20	8	108771	32	1	31	0	154
ASE_00077	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.21	3	45136	14	1	10	3	83
ASE_00078	RNaseP_bact_a links to Rfam database...	0.57	0.39	0.84	32	43033	8	1	5	2	51
ASE_00080	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	71612	21	2	17	2	123
ASE_00081	RNaseP_bact_a links to Rfam database...	0.14	0.06	0.33	6	49752	13	1	11	1	91
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70476	25	3	21	1	116
ASE_00083	RNaseP_bact_a links to Rfam database...	0.14	0.06	0.32	7	62459	17	0	15	2	103
ASE_00084	RNaseP_bact_a links to Rfam database...	0.12	0.06	0.24	6	53603	21	0	19	2	93
ASE_00087	RNaseP_bact_a links to Rfam database...	0.39	0.26	0.59	37	88347	28	1	25	2	107
ASE_00090	RNaseP_bact_a links to Rfam database...	0.39	0.27	0.56	27	55563	23	3	18	2	74
ASE_00092	RNaseP_bact_a links to Rfam database...	0.15	0.07	0.31	8	63520	19	2	16	1	105
ASE_00099	RNaseP_bact_a links to Rfam database...	0.45	0.27	0.76	32	64578	12	1	9	2	88
ASE_00104	RNaseP_bact_a links to Rfam database...	0.23	0.11	0.50	13	64235	14	0	13	1	106
ASE_00105	RNaseP_bact_a links to Rfam database...	0.15	0.06	0.35	7	64241	17	0	13	4	104
ASE_00107	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.89	78	73065	15	3	7	5	49
ASE_00115	RNaseP_bact_a links to Rfam database...	0.39	0.27	0.56	27	54567	23	0	21	2	74
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60705	22	0	21	1	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.22	4	62817	17	1	13	3	104
ASE_00123	RNaseP_bact_a links to Rfam database...	0.11	0.04	0.38	3	38495	7	0	5	2	82
ASE_00125	RNaseP_bact_a links to Rfam database...	0.36	0.16	0.82	14	39323	4	0	3	1	74
ASE_00126	RNaseP_bact_a links to Rfam database...	0.29	0.15	0.57	12	40449	11	1	8	2	70
ASE_00128	RNaseP_bact_a links to Rfam database...	0.23	0.12	0.43	12	53273	17	1	15	1	88
ASE_00129	RNaseP_bact_a links to Rfam database...	0.17	0.07	0.40	8	62815	14	1	11	2	103
ASE_00131	RNaseP_bact_a links to Rfam database...	0.34	0.22	0.51	19	39303	24	0	18	6	66
ASE_00134	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.67	32	50355	17	3	13	1	63
ASE_00135	RNaseP_bact_a links to Rfam database...	0.36	0.24	0.53	26	63141	25	1	22	2	83
ASE_00136	RNaseP_bact_a links to Rfam database...	0.34	0.20	0.60	18	48175	15	0	12	3	74
ASE_00137	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.08	2	48491	24	2	21	1	96
ASE_00138	RNaseP_bact_a links to Rfam database...	0.68	0.59	0.79	48	40409	18	2	11	5	33
ASE_00140	RNaseP_bact_a links to Rfam database...	0.53	0.42	0.65	53	70795	33	3	25	5	72
ASE_00142	RNaseP_bact_a links to Rfam database...	0.33	0.18	0.59	22	67124	17	1	14	2	100
ASE_00146	RNaseP_bact_a links to Rfam database...	0.19	0.08	0.43	10	70853	14	2	11	1	114
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57614	24	5	11	8	73
ASE_00163	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.09	1	53290	14	1	9	4	92
ASE_00165	RNaseP_bact_a links to Rfam database...	0.17	0.09	0.35	9	52949	18	4	13	1	92
ASE_00170	RNaseP_bact_a links to Rfam database...	0.47	0.33	0.67	31	48782	17	1	14	2	62
ASE_00171	RNaseP_bact_a links to Rfam database...	0.20	0.09	0.47	8	48499	12	2	7	3	86
ASE_00172	RNaseP_bact_a links to Rfam database...	0.41	0.23	0.73	24	58963	11	1	8	2	82
ASE_00174	RNaseP_bact_a links to Rfam database...	0.16	0.07	0.35	8	61052	16	1	14	1	101
ASE_00175	RNaseP_bact_a links to Rfam database...	0.41	0.25	0.68	27	59991	15	1	12	2	80
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44238	16	2	13	1	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.21	0.09	0.50	9	51342	13	1	8	4	91
ASE_00181	RNaseP_bact_a links to Rfam database...	0.32	0.16	0.63	17	57603	10	0	10	0	89
ASE_00182	RNaseP_bact_a links to Rfam database...	0.15	0.09	0.27	12	84210	35	3	30	2	124
ASE_00183	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61405	20	0	20	0	113
ASE_00184	RNaseP_bact_a links to Rfam database...	0.17	0.06	0.50	6	54603	8	0	6	2	96
ASE_00185	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.26	9	73501	29	0	26	3	119
ASE_00186	RNaseP_bact_a links to Rfam database...	0.24	0.13	0.46	17	78966	22	1	19	2	115
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45434	18	4	13	1	90
ASE_00197	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.10	3	89222	28	0	28	0	142
ASE_00198	RNaseP_bact_a links to Rfam database...	0.06	0.02	0.18	2	52639	10	0	9	1	100
ASE_00203	RNaseP_bact_a links to Rfam database...	0.16	0.06	0.43	6	46651	8	0	8	0	90
ASE_00212	RNaseP_bact_a links to Rfam database...	0.21	0.11	0.40	17	93918	26	4	22	0	131
ASE_00214	RNaseP_bact_a links to Rfam database...	0.18	0.09	0.38	9	56256	18	0	15	3	94
ASE_00215	RNaseP_bact_a links to Rfam database...	0.22	0.15	0.31	15	48468	34	1	32	1	84
ASE_00216	RNaseP_bact_a links to Rfam database...	0.19	0.09	0.41	7	39323	10	0	10	0	75
ASE_00217	RNaseP_bact_a links to Rfam database...	0.11	0.04	0.27	4	40455	11	0	11	0	86
ASE_00221	RNaseP_bact_a links to Rfam database...	0.26	0.13	0.54	15	64592	14	0	13	1	102
ASE_00228	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	54	46905	18	3	9	6	32
ASE_00229	RNaseP_bact_a links to Rfam database...	0.56	0.39	0.81	34	42444	9	2	6	1	53
ASE_00231	RNaseP_bact_a links to Rfam database...	0.18	0.08	0.40	8	47875	15	0	12	3	88
ASE_00232	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	60	38439	9	1	3	5	24
ASE_00234	RNaseP_bact_a links to Rfam database...	0.30	0.19	0.47	24	75415	28	4	23	1	105
ASE_00238	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.04	1	64236	27	1	23	3	113
ASE_00241	RNaseP_bact_a links to Rfam database...	0.67	0.60	0.75	52	43887	22	2	15	5	35
ASE_00242	RNaseP_bact_a links to Rfam database...	0.29	0.14	0.57	16	61047	14	0	12	2	96
ASE_00248	RNaseP_bact_a links to Rfam database...	0.30	0.16	0.58	18	62450	16	0	13	3	96
ASE_00254	RNaseP_bact_a links to Rfam database...	0.29	0.12	0.71	10	36842	6	0	4	2	72
ASE_00255	RNaseP_bact_a links to Rfam database...	0.29	0.15	0.59	19	74659	16	1	12	3	111
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51014	29	3	23	3	97
ASE_00263	RNaseP_bact_a links to Rfam database...	0.33	0.23	0.46	28	70439	34	2	31	1	92
ASE_00267	RNaseP_bact_a links to Rfam database...	0.45	0.32	0.65	28	45107	17	1	14	2	60
ASE_00270	RNaseP_bact_a links to Rfam database...	0.24	0.14	0.42	18	72347	26	1	24	1	110
ASE_00274	RNaseP_bact_a links to Rfam database...	0.18	0.07	0.47	7	55596	11	1	7	3	96
ASE_00277	RNaseP_bact_a links to Rfam database...	0.11	0.05	0.24	5	48184	18	4	12	2	86
ASE_00279	RNaseP_bact_a links to Rfam database...	0.61	0.48	0.79	48	53240	18	2	11	5	53
ASE_00280	RNaseP_bact_a links to Rfam database...	0.63	0.54	0.74	53	51931	23	0	19	4	45
ASE_00281	RNaseP_bact_a links to Rfam database...	0.23	0.09	0.57	8	44537	8	0	6	2	80
ASE_00282	RNaseP_bact_a links to Rfam database...	0.14	0.06	0.31	8	77789	20	2	16	2	119
ASE_00283	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.86	54	61713	13	0	9	4	53
ASE_00284	RNaseP_bact_a links to Rfam database...	0.27	0.14	0.54	15	58283	16	0	13	3	93
ASE_00285	RNaseP_bact_a links to Rfam database...	0.39	0.25	0.60	31	68954	22	3	18	1	91
ASE_00286	RNaseP_bact_a links to Rfam database...	0.24	0.11	0.53	10	46646	12	0	9	3	82
ASE_00287	RNaseP_bact_a links to Rfam database...	0.16	0.08	0.33	8	54922	16	4	12	0	95
ASE_00292	RNaseP_bact_a links to Rfam database...	0.20	0.11	0.37	15	81769	28	1	25	2	123
ASE_00294	RNaseP_bact_a links to Rfam database...	0.15	0.08	0.29	14	114432	37	1	34	2	157
ASE_00296	RNaseP_bact_a links to Rfam database...	0.12	0.06	0.22	9	91765	32	2	30	0	136
ASE_00297	RNaseP_bact_a links to Rfam database...	0.21	0.10	0.45	10	52953	14	0	12	2	88
ASE_00298	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.50	13	67502	15	1	12	2	100
ASE_00318	RNaseP_bact_b links to Rfam database...	0.60	0.48	0.74	57	80123	31	2	18	11	61
ASE_00328	RNaseP_bact_b links to Rfam database...	0.63	0.56	0.71	63	72682	35	1	25	9	49
ASE_00332	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.49	17	81775	19	0	18	1	121
ASE_00335	RNaseP_bact_b links to Rfam database...	0.68	0.61	0.76	71	75372	32	2	21	9	45
ASE_00340	RNaseP_bact_a links to Rfam database...	0.59	0.41	0.83	35	46014	10	2	5	3	50
ASE_00342	RNaseP_bact_a links to Rfam database...	0.57	0.39	0.83	45	62427	11	2	7	2	70
ASE_00353	RNaseP_bact_a links to Rfam database...	0.29	0.12	0.68	13	57951	8	0	6	2	94
ASE_00361	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.10	1	75456	11	0	9	2	126
ASE_00362	RNaseP_bact_a links to Rfam database...	0.17	0.08	0.37	7	48186	14	0	12	2	84
ASE_00363	RNaseP_bact_a links to Rfam database...	0.39	0.26	0.60	24	51320	18	1	15	2	70
ASE_00364	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	54262	19	0	19	0	101
ASE_00366	RNaseP_bact_a links to Rfam database...	0.06	0.03	0.10	3	58624	26	4	22	0	95
ASE_00367	RNaseP_bact_a links to Rfam database...	0.27	0.15	0.50	13	43045	15	2	11	2	73
ASE_00369	RNaseP_bact_a links to Rfam database...	0.43	0.26	0.72	28	55906	15	0	11	4	79
ASE_00370	RNaseP_bact_a links to Rfam database...	0.13	0.06	0.29	5	41888	13	1	11	1	79
ASE_00372	RNaseP_bact_a links to Rfam database...	0.44	0.29	0.67	29	51960	15	2	12	1	71
ASE_00374	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.07	1	44836	19	0	13	6	87
ASE_00376	RNaseP_bact_a links to Rfam database...	0.43	0.25	0.76	26	56919	10	0	8	2	79
ASE_00377	RNaseP_bact_a links to Rfam database...	0.18	0.09	0.36	10	57602	19	1	17	1	97
ASE_00379	RNaseP_bact_a links to Rfam database...	0.47	0.29	0.74	26	46021	11	1	8	2	63
ASE_00382	RNaseP_bact_a links to Rfam database...	0.57	0.42	0.78	35	41860	12	1	9	2	49
ASE_00383	RNaseP_bact_a links to Rfam database...	0.17	0.08	0.38	8	54594	15	2	11	2	97
ASE_00384	RNaseP_bact_a links to Rfam database...	0.19	0.10	0.38	9	48492	18	1	14	3	83
ASE_00386	RNaseP_bact_a links to Rfam database...	0.13	0.05	0.33	5	50388	11	0	10	1	91
ASE_00387	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.50	12	55921	15	1	11	3	92
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45739	14	1	13	0	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.71	30	42153	16	1	11	4	55
ASE_00393	RNaseP_bact_a links to Rfam database...	0.36	0.22	0.61	20	47862	15	1	12	2	73
ASE_00394	RNaseP_bact_a links to Rfam database...	0.71	0.60	0.84	56	46904	17	2	9	6	37
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41595	22	1	20	1	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.05	1	41597	20	0	18	2	82
ASE_00397	RNaseP_bact_a links to Rfam database...	0.31	0.17	0.55	18	54582	17	2	13	2	87
ASE_00398	RNaseP_bact_a links to Rfam database...	0.15	0.08	0.30	8	55918	22	0	19	3	96
ASE_00400	RNaseP_bact_a links to Rfam database...	0.28	0.15	0.53	16	57940	18	1	13	4	90
ASE_00401	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77010	20	0	18	2	126
ASE_00402	RNaseP_bact_a links to Rfam database...	0.12	0.05	0.31	4	42473	11	0	9	2	81
ASE_00403	RNaseP_bact_a links to Rfam database...	0.44	0.27	0.73	29	55905	13	3	8	2	78
ASE_00404	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.19	3	43055	18	1	12	5	82
ASE_00406	RNaseP_bact_a links to Rfam database...	0.30	0.18	0.49	17	48793	19	3	15	1	77
ASE_00411	RNaseP_bact_a links to Rfam database...	0.21	0.10	0.43	9	49434	15	1	11	3	80
ASE_00412	RNaseP_bact_a links to Rfam database...	0.15	0.08	0.30	8	58284	21	2	17	2	97
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44533	19	1	17	1	81
ASE_00415	RNaseP_bact_a links to Rfam database...	0.13	0.06	0.30	6	54926	14	2	12	0	97
ASE_00416	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.27	3	77410	8	0	8	0	124
ASE_00419	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.48	12	54921	14	2	11	1	91
ASE_00422	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.07	2	46944	27	0	25	2	92
ASE_00423	RNaseP_bact_a links to Rfam database...	0.45	0.23	0.89	25	56925	6	0	3	3	84
ASE_00428	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.13	2	76620	15	1	13	1	123
ASE_00430	RNaseP_bact_a links to Rfam database...	0.20	0.09	0.45	9	46951	11	0	11	0	88
ASE_00437	RNaseP_bact_a links to Rfam database...	0.57	0.41	0.81	55	79333	18	2	11	5	80
ASE_00441	RNaseP_bact_a links to Rfam database...	0.28	0.16	0.47	18	64223	24	1	19	4	94
ASE_00448	RNaseP_bact_a links to Rfam database...	0.58	0.46	0.74	51	64192	22	2	16	4	61
ASE_00451	RNaseP_bact_a links to Rfam database...	0.41	0.25	0.67	31	70830	17	1	14	2	94
RFA_00599	Telomerase-vert links to Rfam database...	0.44	0.32	0.61	36	101416	35	2	21	12	75
RFA_00601	Telomerase-vert links to Rfam database...	0.53	0.35	0.80	40	99185	20	0	10	10	74
RFA_00602	Telomerase-vert links to Rfam database...	0.44	0.29	0.65	34	101423	27	1	17	9	82
TMR_00017	tmRNA links to Rfam database...	0.39	0.35	0.42	36	67076	53	12	37	4	66
TMR_00018	tmRNA links to Rfam database...	0.57	0.54	0.60	50	64537	36	14	19	3	42
TMR_00038	tmRNA links to Rfam database...	0.47	0.30	0.73	33	71208	14	4	8	2	77
TMR_00042	tmRNA links to Rfam database...	0.58	0.46	0.74	45	62774	17	5	11	1	53
TMR_00046	tmRNA links to Rfam database...	0.54	0.50	0.59	48	62753	36	12	22	2	48
TMR_00048	tmRNA links to Rfam database...	0.49	0.44	0.54	42	64902	40	10	26	4	53
TMR_00080	tmRNA links to Rfam database...	0.39	0.34	0.44	33	70425	44	11	31	2	63
TMR_00082	tmRNA links to Rfam database...	0.59	0.55	0.64	53	67813	33	13	17	3	43
TMR_00123	tmRNA links to Rfam database...	0.67	0.61	0.73	62	66345	28	8	15	5	39
TMR_00137	tmRNA links to Rfam database...	0.48	0.38	0.60	34	61018	24	7	16	1	55
TMR_00142	tmRNA links to Rfam database...	0.45	0.39	0.51	40	70798	38	9	29	0	62
TMR_00207	tmRNA links to Rfam database...	0.51	0.47	0.56	48	72304	45	12	26	7	55
TMR_00257	tmRNA links to Rfam database...	0.61	0.53	0.69	52	67086	26	3	20	3	46
TMR_00271	tmRNA links to Rfam database...	0.30	0.22	0.40	20	64211	34	5	25	4	71
TMR_00332	tmRNA links to Rfam database...	0.66	0.61	0.71	60	67077	31	8	16	7	39
TMR_00366	tmRNA links to Rfam database...	0.41	0.41	0.41	41	67795	61	13	47	1	59
TMR_00378	tmRNA links to Rfam database...	0.40	0.40	0.40	39	67798	60	13	46	1	58
TMR_00399	tmRNA links to Rfam database...	0.27	0.16	0.47	15	64948	18	5	12	1	79
TMR_00404	tmRNA links to Rfam database...	0.44	0.37	0.52	34	67463	31	6	25	0	58
TMR_00427	tmRNA links to Rfam database...	0.60	0.53	0.69	51	67454	27	6	17	4	46
TMR_00443	tmRNA links to Rfam database...	0.68	0.64	0.73	67	67069	28	11	14	3	37
TMR_00451	tmRNA links to Rfam database...	0.37	0.34	0.42	30	63474	47	14	28	5	59
TMR_00458	tmRNA links to Rfam database...	0.55	0.47	0.64	44	63477	26	6	19	1	49
TMR_00469	tmRNA links to Rfam database...	0.52	0.40	0.69	40	64562	22	7	11	4	60
TMR_00472	tmRNA links to Rfam database...	0.64	0.58	0.71	56	64541	26	11	12	3	41
TMR_00519	tmRNA links to Rfam database...	0.22	0.15	0.34	14	63149	29	5	22	2	81
TMR_00520	tmRNA links to Rfam database...	0.54	0.51	0.57	50	63102	40	11	27	2	49
TMR_00522	tmRNA links to Rfam database...	0.43	0.39	0.48	38	63111	43	11	30	2	59
TMR_00528	tmRNA links to Rfam database...	0.42	0.38	0.46	37	63110	44	14	29	1	60
TMR_00540	tmRNA links to Rfam database...	0.53	0.45	0.62	47	73460	32	10	19	3	57
TMR_00568	tmRNA links to Rfam database...	0.32	0.28	0.35	28	60647	51	10	41	0	71
TMR_00571	tmRNA links to Rfam database...	0.43	0.40	0.47	40	60640	46	10	36	0	59
TMR_00580	tmRNA links to Rfam database...	0.62	0.59	0.66	59	60636	37	8	23	6	41
TMR_00584	tmRNA links to Rfam database...	0.43	0.38	0.48	37	60998	40	11	29	0	60
TMR_00586	tmRNA links to Rfam database...	0.37	0.36	0.37	35	60981	59	20	39	0	62
TMR_00616	tmRNA links to Rfam database...	0.56	0.45	0.68	45	67095	24	4	17	3	54
TMR_00699	tmRNA links to Rfam database...	0.68	0.63	0.74	64	67074	25	8	15	2	38
TMR_00702	tmRNA links to Rfam database...	0.64	0.59	0.70	59	67077	28	7	18	3	41
TMR_00703	tmRNA links to Rfam database...	0.69	0.64	0.76	63	67445	23	4	16	3	36

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of PETfold_pre2.0(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(seed)

2. Individual counts for PETfold_pre2.0(seed) [ download as .csv ]

Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

2. Individual counts for RSpredict(20) [ download as .csv ]