CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	PETfold_pre2.0(seed)		TurboFold(20)
MCC	0.754	>	0.740
Average MCC ± 95% Confidence Intervals	0.754 ± 0.012	>	0.739 ± 0.012
Sensitivity	0.673	<	0.685
Positive Predictive Value	0.845	>	0.801
Total TP	14412	<	14660
Total TN	12416941	>	12415696
Total FP	3938	<	4796
Total FP CONTRA	946	>	517
Total FP INCONS	1707	<	3133
Total FP COMP	1285	>	1146
Total FN	7003	>	6755
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of PETfold_pre2.0(seed) and TurboFold(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and TurboFold(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and TurboFold(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and TurboFold(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and TurboFold(20)).

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Performance of PETfold_pre2.0(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(seed)

Total Base Pair Counts
Total TP	14412
Total TN	12416941
Total FP	3938
Total FP CONTRA	946
Total FP INCONS	1707
Total FP COMP	1285
Total FN	7003

Total Scores
MCC	0.754
Average MCC ± 95% Confidence Intervals	0.754 ± 0.012
Sensitivity	0.673
Positive Predictive Value	0.845
Nr of predictions	204

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2. Individual counts for PETfold_pre2.0(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	60	47823	17	2	10	5	37
ASE_00005	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	80	57879	16	4	7	5	37
ASE_00006	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.81	59	47513	19	2	12	5	34
ASE_00007	RNaseP_bact_a links to Rfam database...	0.88	0.86	0.90	95	59579	16	4	7	5	15
ASE_00012	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.85	88	73817	23	6	9	8	35
ASE_00018	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.87	94	80493	19	5	9	5	40
ASE_00020	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	68	73837	21	8	7	6	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.64	0.51	0.79	82	104092	30	7	15	8	78
ASE_00022	RNaseP_bact_b links to Rfam database...	0.83	0.76	0.90	94	82924	24	2	8	14	30
ASE_00028	RNaseP_bact_b links to Rfam database...	0.83	0.75	0.90	95	84561	22	2	8	12	31
ASE_00035	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	92	70395	21	4	9	8	26
ASE_00037	RNaseP_bact_a links to Rfam database...	0.90	0.88	0.92	97	59234	14	4	5	5	13
ASE_00038	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	53546	14	4	5	5	28
ASE_00040	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.91	97	78896	16	4	6	6	36
ASE_00041	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.85	88	57527	20	4	11	5	20
ASE_00042	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.81	87	89993	24	4	16	4	58
ASE_00044	RNaseP_bact_a links to Rfam database...	0.89	0.88	0.91	92	54514	14	4	5	5	13
ASE_00064	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	70	45371	15	4	6	5	19
ASE_00068	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.72	47	37610	20	4	14	2	38
ASE_00074	RNaseP_bact_a links to Rfam database...	0.87	0.83	0.92	99	67788	14	4	5	5	20
ASE_00075	RNaseP_bact_a links to Rfam database...	0.66	0.52	0.83	85	108709	27	6	11	10	77
ASE_00077	RNaseP_bact_a links to Rfam database...	0.84	0.83	0.86	71	45067	16	5	7	4	15
ASE_00078	RNaseP_bact_a links to Rfam database...	0.91	0.88	0.94	73	42993	12	3	2	7	10
ASE_00080	RNaseP_bact_a links to Rfam database...	0.47	0.38	0.58	47	71550	40	4	30	6	76
ASE_00081	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.89	73	49688	15	3	6	6	24
ASE_00082	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	66	70423	20	3	8	9	50
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	72	62399	16	4	6	6	38
ASE_00084	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	71	53546	16	4	7	5	28
ASE_00087	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.88	72	88328	16	4	6	6	72
ASE_00090	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	55529	15	4	5	6	28
ASE_00092	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.82	67	63464	21	6	9	6	46
ASE_00099	RNaseP_bact_a links to Rfam database...	0.87	0.83	0.92	99	64512	14	4	5	5	21
ASE_00104	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.91	98	64153	15	4	6	5	21
ASE_00105	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.67	56	64178	32	8	19	5	55
ASE_00107	RNaseP_bact_a links to Rfam database...	0.84	0.77	0.91	98	73045	15	4	6	5	29
ASE_00115	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	71	54535	14	4	5	5	30
ASE_00118	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.85	66	60648	18	4	8	6	36
ASE_00119	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.84	59	62765	15	5	6	4	49
ASE_00123	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	54	38438	16	4	7	5	31
ASE_00125	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	54	39275	16	4	7	5	34
ASE_00126	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.87	69	40391	16	4	6	6	13
ASE_00128	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.89	73	53219	14	4	5	5	27
ASE_00129	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.89	73	62753	14	4	5	5	38
ASE_00131	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	50	39279	16	4	7	5	35
ASE_00134	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	69	50321	18	4	9	5	26
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.71	60	63106	27	6	18	3	49
ASE_00136	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	72	48123	15	4	6	5	20
ASE_00137	RNaseP_bact_a links to Rfam database...	0.80	0.69	0.93	68	48443	10	3	2	5	30
ASE_00138	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.87	68	40392	15	5	5	5	13
ASE_00140	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	67	70794	21	9	6	6	58
ASE_00142	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.90	94	67056	17	4	7	6	28
ASE_00146	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.90	95	70770	16	4	7	5	29
ASE_00153	RNaseP_nuc links to Rfam database...	0.63	0.55	0.71	40	57574	20	3	13	4	33
ASE_00163	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	72	53219	15	5	5	5	21
ASE_00165	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.92	68	52901	12	3	3	6	33
ASE_00170	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	68	48746	19	5	9	5	25
ASE_00171	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	71	48436	15	4	5	6	23
ASE_00172	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	72	58914	15	5	5	5	34
ASE_00174	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.79	65	60993	22	4	13	5	44
ASE_00175	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	68	59948	20	5	10	5	39
ASE_00179	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.86	67	44175	14	5	6	3	17
ASE_00180	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	73	51277	15	5	5	5	27
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.80	66	57548	22	7	9	6	40
ASE_00182	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.88	72	84173	15	4	6	5	64
ASE_00183	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.88	73	61342	15	5	5	5	40
ASE_00184	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	54533	14	3	6	5	29
ASE_00185	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.87	69	73457	15	5	5	5	59
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	86	78897	26	4	16	6	46
ASE_00190	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.85	62	45378	20	2	9	9	28
ASE_00197	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.82	86	89148	24	4	15	5	59
ASE_00198	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	52568	15	4	5	6	29
ASE_00203	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	69	46587	14	4	5	5	27
ASE_00212	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	85	93860	21	4	12	5	63
ASE_00214	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.88	72	56198	16	5	5	6	31
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.49	0.72	49	48448	21	4	15	2	50
ASE_00216	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.97	70	39268	8	2	0	6	12
ASE_00217	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.89	74	40387	15	4	5	6	16
ASE_00221	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.90	95	64514	16	4	7	5	22
ASE_00228	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.90	65	46899	13	3	4	6	21
ASE_00229	RNaseP_bact_a links to Rfam database...	0.87	0.80	0.93	70	42411	10	2	3	5	17
ASE_00231	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.83	60	47823	17	2	10	5	36
ASE_00232	RNaseP_bact_a links to Rfam database...	0.90	0.83	0.97	70	38431	7	2	0	5	14
ASE_00234	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.82	68	75383	21	9	6	6	61
ASE_00238	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	64	64179	24	7	11	6	50
ASE_00241	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.88	72	43874	15	4	6	5	15
ASE_00242	RNaseP_bact_a links to Rfam database...	0.89	0.87	0.92	97	60969	15	4	5	6	15
ASE_00248	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	97	62375	15	4	5	6	17
ASE_00254	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.96	68	36785	9	2	1	6	14
ASE_00255	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.75	77	74588	31	5	21	5	53
ASE_00257	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.83	67	50959	19	5	9	5	30
ASE_00263	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	72	70418	15	5	5	5	48
ASE_00267	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	72	45069	14	3	6	5	16
ASE_00270	RNaseP_bact_a links to Rfam database...	0.59	0.45	0.77	57	72316	22	3	14	5	71
ASE_00274	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.80	65	55530	21	6	10	5	38
ASE_00277	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.82	62	48129	19	8	6	5	29
ASE_00279	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.86	70	53220	16	4	7	5	31
ASE_00280	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.83	68	51921	19	5	9	5	30
ASE_00281	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	71	44470	15	4	6	5	17
ASE_00282	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	73	77732	15	5	5	5	54
ASE_00283	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.88	72	61694	15	4	6	5	35
ASE_00284	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	72	58228	16	6	5	5	36
ASE_00285	RNaseP_bact_a links to Rfam database...	0.72	0.59	0.88	72	68924	15	4	6	5	50
ASE_00286	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	71	46584	15	4	6	5	21
ASE_00287	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	64	54864	23	3	15	5	39
ASE_00292	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.91	97	81703	16	4	6	6	41
ASE_00294	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	97	114373	16	4	7	5	74
ASE_00296	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.86	93	91698	20	5	10	5	52
ASE_00297	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.80	63	52896	21	6	10	5	35
ASE_00298	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	72	67446	15	6	4	5	41
ASE_00318	RNaseP_bact_b links to Rfam database...	0.81	0.74	0.90	87	80103	25	2	8	15	31
ASE_00328	RNaseP_bact_b links to Rfam database...	0.87	0.83	0.90	93	72668	24	2	8	14	19
ASE_00332	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.92	99	81702	14	4	5	5	39
ASE_00335	RNaseP_bact_b links to Rfam database...	0.85	0.79	0.90	92	75364	26	2	8	16	24
ASE_00340	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.89	62	45986	15	2	6	7	23
ASE_00342	RNaseP_bact_a links to Rfam database...	0.89	0.86	0.92	99	62373	14	4	5	5	16
ASE_00353	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	73	57887	15	5	5	5	34
ASE_00361	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	72	75384	15	4	6	5	55
ASE_00362	RNaseP_bact_a links to Rfam database...	0.84	0.79	0.89	72	48124	16	4	5	7	19
ASE_00363	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.84	69	51278	18	3	10	5	25
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.84	69	54203	18	5	8	5	36
ASE_00366	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.84	70	58570	18	6	7	5	28
ASE_00367	RNaseP_bact_a links to Rfam database...	0.87	0.85	0.89	73	42989	15	4	5	6	13
ASE_00369	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	73	55863	15	4	5	6	34
ASE_00370	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.88	70	41825	16	3	7	6	14
ASE_00372	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	71	51922	16	4	6	6	29
ASE_00374	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	71	44770	15	4	5	6	17
ASE_00376	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.87	71	56871	17	4	7	6	34
ASE_00377	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.84	70	57547	18	5	8	5	37
ASE_00379	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	72	45975	16	4	5	7	17
ASE_00382	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	72	41824	16	3	6	7	12
ASE_00383	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	73	54533	15	4	5	6	32
ASE_00384	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.87	71	48434	17	4	7	6	21
ASE_00386	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	73	50321	14	4	5	5	23
ASE_00387	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.80	64	55865	21	3	13	5	40
ASE_00388	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.86	69	45673	18	4	7	7	20
ASE_00390	RNaseP_bact_a links to Rfam database...	0.84	0.82	0.86	70	42114	17	3	8	6	15
ASE_00393	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	67	47813	21	4	11	6	26
ASE_00394	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	66	46894	15	3	8	4	27
ASE_00395	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	72	41535	15	4	5	6	12
ASE_00396	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.86	70	41535	16	5	6	5	13
ASE_00397	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	73	54533	15	4	5	6	32
ASE_00398	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.86	70	55864	17	4	7	6	34
ASE_00400	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	73	57888	15	4	5	6	33
ASE_00401	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.87	68	76950	16	5	5	6	58
ASE_00402	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	73	42404	15	3	6	6	12
ASE_00403	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	73	55863	15	4	5	6	34
ASE_00404	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.89	71	42991	15	4	5	6	14
ASE_00406	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.89	73	48746	14	4	5	5	21
ASE_00411	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	61	49370	29	10	14	5	28
ASE_00412	RNaseP_bact_a links to Rfam database...	0.64	0.57	0.72	60	58228	28	7	16	5	45
ASE_00413	RNaseP_bact_a links to Rfam database...	0.80	0.79	0.81	64	44472	22	7	8	7	17
ASE_00415	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.68	52	54869	29	3	22	4	51
ASE_00416	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	91	77313	22	6	11	5	36
ASE_00419	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.83	68	54864	19	7	7	5	35
ASE_00422	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	67	46895	13	1	8	4	27
ASE_00423	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.81	83	56851	25	4	15	6	26
ASE_00428	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	91	76528	22	6	11	5	34
ASE_00430	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	69	46896	11	2	4	5	28
ASE_00437	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.68	72	79295	39	4	30	5	63
ASE_00441	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	64	64185	18	4	8	6	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.88	94	64154	18	4	9	5	18
ASE_00451	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.91	98	70768	15	4	6	5	27
RFA_00599	Telomerase-vert links to Rfam database...	0.88	0.86	0.90	95	101370	21	3	7	11	16
RFA_00601	Telomerase-vert links to Rfam database...	0.87	0.84	0.89	96	99127	25	3	9	13	18
RFA_00602	Telomerase-vert links to Rfam database...	0.82	0.77	0.87	89	101373	22	3	10	9	27
TMR_00017	tmRNA links to Rfam database...	0.72	0.62	0.84	63	67086	20	6	6	8	39
TMR_00018	tmRNA links to Rfam database...	0.65	0.59	0.72	54	64545	29	8	13	8	38
TMR_00038	tmRNA links to Rfam database...	0.64	0.52	0.79	57	71181	21	6	9	6	53
TMR_00042	tmRNA links to Rfam database...	0.68	0.60	0.78	59	62759	23	7	10	6	39
TMR_00046	tmRNA links to Rfam database...	0.47	0.42	0.53	40	62760	41	6	29	6	56
TMR_00048	tmRNA links to Rfam database...	0.68	0.61	0.76	58	64904	24	7	11	6	37
TMR_00080	tmRNA links to Rfam database...	0.55	0.49	0.63	47	70425	35	10	18	7	49
TMR_00082	tmRNA links to Rfam database...	0.59	0.51	0.68	49	67824	32	9	14	9	47
TMR_00123	tmRNA links to Rfam database...	0.72	0.61	0.84	62	66356	21	7	5	9	39
TMR_00137	tmRNA links to Rfam database...	0.63	0.56	0.71	50	61005	32	8	12	12	39
TMR_00142	tmRNA links to Rfam database...	0.63	0.54	0.74	55	70802	27	4	15	8	47
TMR_00207	tmRNA links to Rfam database...	0.68	0.57	0.80	59	72316	24	7	8	9	44
TMR_00257	tmRNA links to Rfam database...	0.72	0.62	0.82	61	67087	22	7	6	9	37
TMR_00271	tmRNA links to Rfam database...	0.62	0.54	0.71	49	64192	32	7	13	12	42
TMR_00332	tmRNA links to Rfam database...	0.69	0.60	0.80	59	67087	25	6	9	10	40
TMR_00366	tmRNA links to Rfam database...	0.63	0.54	0.74	54	67823	28	3	16	9	46
TMR_00378	tmRNA links to Rfam database...	0.65	0.55	0.77	53	67827	26	3	13	10	44
TMR_00399	tmRNA links to Rfam database...	0.66	0.59	0.74	55	64906	26	9	10	7	39
TMR_00404	tmRNA links to Rfam database...	0.58	0.51	0.66	47	67457	35	6	18	11	45
TMR_00427	tmRNA links to Rfam database...	0.68	0.60	0.76	58	67452	26	11	7	8	39
TMR_00443	tmRNA links to Rfam database...	0.72	0.62	0.84	64	67085	19	6	6	7	40
TMR_00451	tmRNA links to Rfam database...	0.56	0.51	0.63	45	63474	37	13	14	10	44
TMR_00458	tmRNA links to Rfam database...	0.66	0.58	0.75	54	63474	29	8	10	11	39
TMR_00469	tmRNA links to Rfam database...	0.71	0.61	0.84	61	64547	20	6	6	8	39
TMR_00472	tmRNA links to Rfam database...	0.68	0.59	0.79	57	64548	23	7	8	8	40
TMR_00519	tmRNA links to Rfam database...	0.64	0.57	0.72	54	63115	29	9	12	8	41
TMR_00520	tmRNA links to Rfam database...	0.68	0.60	0.79	59	63115	25	7	9	9	40
TMR_00522	tmRNA links to Rfam database...	0.65	0.56	0.75	54	63118	28	6	12	10	43
TMR_00528	tmRNA links to Rfam database...	0.64	0.56	0.74	54	63117	28	6	13	9	43
TMR_00540	tmRNA links to Rfam database...	0.65	0.56	0.75	58	73459	25	9	10	6	46
TMR_00568	tmRNA links to Rfam database...	0.76	0.65	0.89	64	60654	17	1	7	9	35
TMR_00571	tmRNA links to Rfam database...	0.78	0.67	0.92	66	60654	16	1	5	10	33
TMR_00580	tmRNA links to Rfam database...	0.74	0.61	0.90	61	60658	17	2	5	10	39
TMR_00584	tmRNA links to Rfam database...	0.77	0.65	0.91	63	61006	14	2	4	8	34
TMR_00586	tmRNA links to Rfam database...	0.74	0.64	0.85	62	61002	19	5	6	8	35
TMR_00616	tmRNA links to Rfam database...	0.65	0.56	0.75	55	67088	24	8	10	6	44
TMR_00699	tmRNA links to Rfam database...	0.68	0.58	0.80	59	67087	23	6	9	8	43
TMR_00702	tmRNA links to Rfam database...	0.64	0.55	0.74	55	67087	27	3	16	8	45
TMR_00703	tmRNA links to Rfam database...	0.68	0.60	0.79	59	67453	23	7	9	7	40

^top

Performance of TurboFold(20) - scored lower in this pairwise comparison

1. Total counts & total scores for TurboFold(20)

Total Base Pair Counts
Total TP	14660
Total TN	12415696
Total FP	4796
Total FP CONTRA	517
Total FP INCONS	3133
Total FP COMP	1146
Total FN	6755

Total Scores
MCC	0.740
Average MCC ± 95% Confidence Intervals	0.739 ± 0.012
Sensitivity	0.685
Positive Predictive Value	0.801
Nr of predictions	204

^top

2. Individual counts for TurboFold(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.83	76	47803	17	5	11	1	21
ASE_00005	RNaseP_bact_a links to Rfam database...	0.85	0.76	0.95	89	57876	10	1	4	5	28
ASE_00006	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.81	72	47497	19	3	14	2	21
ASE_00007	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.80	78	59588	26	1	18	7	32
ASE_00012	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.84	84	73820	22	3	13	6	39
ASE_00018	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.90	105	80484	14	1	11	2	29
ASE_00020	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.79	81	73817	24	2	20	2	45
ASE_00021	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.85	106	104071	26	1	18	7	54
ASE_00022	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.84	86	82926	22	3	13	6	38
ASE_00028	RNaseP_bact_b links to Rfam database...	0.82	0.76	0.89	96	84558	20	1	11	8	30
ASE_00035	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.74	73	70401	31	2	24	5	45
ASE_00037	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.84	74	59252	16	1	13	2	36
ASE_00038	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.88	75	53543	12	1	9	2	26
ASE_00040	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.82	92	78891	26	1	19	6	41
ASE_00041	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.86	72	57546	13	0	12	1	36
ASE_00042	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	100	89981	22	2	17	3	45
ASE_00044	RNaseP_bact_a links to Rfam database...	0.81	0.79	0.83	83	54515	21	3	14	4	22
ASE_00064	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.85	63	45377	19	0	11	8	26
ASE_00068	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.90	60	37608	8	1	6	1	25
ASE_00074	RNaseP_bact_a links to Rfam database...	0.78	0.75	0.82	89	67788	22	1	18	3	30
ASE_00075	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.86	110	108683	24	2	16	6	52
ASE_00077	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.79	56	45079	22	2	13	7	30
ASE_00078	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	64	42998	17	0	9	8	19
ASE_00080	RNaseP_bact_a links to Rfam database...	0.69	0.62	0.78	76	71533	26	0	22	4	47
ASE_00081	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.82	67	49688	17	2	13	2	30
ASE_00082	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.86	75	70413	24	0	12	12	41
ASE_00083	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	85	62386	12	0	10	2	25
ASE_00084	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.85	71	53544	20	1	12	7	28
ASE_00087	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.84	96	88296	24	1	17	6	48
ASE_00090	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	67	55518	31	1	25	5	34
ASE_00092	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.88	84	63451	16	1	10	5	29
ASE_00099	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.87	89	64518	19	1	12	6	31
ASE_00104	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.82	84	64158	25	1	18	6	35
ASE_00105	RNaseP_bact_a links to Rfam database...	0.64	0.55	0.75	61	64180	25	1	19	5	50
ASE_00107	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	93	73043	19	1	16	2	34
ASE_00115	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	54533	12	0	9	3	28
ASE_00118	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	67	60636	26	1	22	3	35
ASE_00119	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	68	62757	12	0	10	2	40
ASE_00123	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	53	38435	19	1	14	4	32
ASE_00125	RNaseP_bact_a links to Rfam database...	0.81	0.68	0.95	60	39277	7	0	3	4	28
ASE_00126	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.82	63	40393	17	1	13	3	19
ASE_00128	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	77	53214	15	1	9	5	23
ASE_00129	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.83	79	62740	21	1	15	5	32
ASE_00131	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	54	39275	16	1	10	5	31
ASE_00134	RNaseP_bact_a links to Rfam database...	0.73	0.72	0.76	68	50313	28	2	20	6	27
ASE_00135	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.84	77	63098	26	0	15	11	32
ASE_00136	RNaseP_bact_a links to Rfam database...	0.87	0.80	0.94	74	48126	11	0	5	6	18
ASE_00137	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.87	78	48426	14	3	9	2	20
ASE_00138	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.78	58	40396	18	1	15	2	23
ASE_00140	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.82	82	70776	21	3	15	3	43
ASE_00142	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.90	95	67056	14	3	7	4	27
ASE_00146	RNaseP_bact_a links to Rfam database...	0.70	0.64	0.76	79	70772	30	1	24	5	45
ASE_00153	RNaseP_nuc links to Rfam database...	0.67	0.67	0.67	49	57557	63	2	22	39	24
ASE_00163	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	63	53218	29	2	18	9	30
ASE_00165	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	67	52884	26	4	20	2	34
ASE_00170	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	72	48747	11	2	7	2	21
ASE_00171	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.93	74	48436	10	0	6	4	20
ASE_00172	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.85	79	58903	20	1	13	6	27
ASE_00174	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	64	60997	15	0	14	1	45
ASE_00175	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.74	68	59939	29	3	21	5	39
ASE_00179	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.87	62	44182	12	1	8	3	22
ASE_00180	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	77	51272	16	2	9	5	23
ASE_00181	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	76	57537	24	0	17	7	30
ASE_00182	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.85	89	84150	17	1	15	1	47
ASE_00183	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.78	80	61322	29	0	23	6	33
ASE_00184	RNaseP_bact_a links to Rfam database...	0.81	0.78	0.84	80	54520	24	1	14	9	22
ASE_00185	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.84	92	73426	23	1	17	5	36
ASE_00186	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.84	98	78886	26	3	16	7	34
ASE_00190	RNaseP_bact_b links to Rfam database...	0.64	0.52	0.78	47	45391	16	1	12	3	43
ASE_00197	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.80	101	89127	31	3	22	6	44
ASE_00198	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.85	72	52565	14	3	10	1	30
ASE_00203	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.91	77	46580	10	3	5	2	19
ASE_00212	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.88	113	93832	22	2	14	6	35
ASE_00214	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.80	74	56187	24	2	17	5	29
ASE_00215	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.78	54	48447	23	0	15	8	45
ASE_00216	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.86	66	39263	13	3	8	2	16
ASE_00217	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	61	40394	17	2	13	2	29
ASE_00221	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.85	79	64527	19	1	13	5	38
ASE_00228	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	65	46894	17	3	9	5	21
ASE_00229	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.78	64	42404	20	5	13	2	23
ASE_00231	RNaseP_bact_a links to Rfam database...	0.81	0.78	0.84	75	47806	15	4	10	1	21
ASE_00232	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.85	67	38424	14	4	8	2	17
ASE_00234	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.77	75	75369	25	2	20	3	54
ASE_00238	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	74	64166	24	4	17	3	40
ASE_00241	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.76	55	43884	22	1	16	5	32
ASE_00242	RNaseP_bact_a links to Rfam database...	0.84	0.80	0.87	90	60972	18	1	12	5	22
ASE_00248	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.77	74	62385	26	0	22	4	40
ASE_00254	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	64	36783	16	3	6	7	18
ASE_00255	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.79	85	74583	25	2	21	2	45
ASE_00257	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	71	50955	19	1	13	5	26
ASE_00263	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.88	93	70394	16	2	11	3	27
ASE_00267	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.83	60	45078	22	0	12	10	28
ASE_00270	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	88	72279	28	2	21	5	40
ASE_00274	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.77	58	55536	21	3	14	4	45
ASE_00277	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	56	48136	15	1	12	2	35
ASE_00279	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	74	53214	17	2	11	4	27
ASE_00280	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.78	62	51923	24	1	17	6	36
ASE_00281	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	63	44482	14	0	6	8	25
ASE_00282	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	86	77708	24	3	18	3	41
ASE_00283	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.83	75	61686	19	3	12	4	32
ASE_00284	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.86	84	58213	22	2	12	8	24
ASE_00285	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	84	68906	23	2	14	7	38
ASE_00286	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	71	46585	19	1	8	10	21
ASE_00287	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	74	54858	19	2	12	5	29
ASE_00292	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	101	81691	23	3	15	5	37
ASE_00294	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.91	127	114342	18	1	11	6	44
ASE_00296	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.79	99	91680	31	2	25	4	46
ASE_00297	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.71	61	52889	27	2	23	2	37
ASE_00298	RNaseP_bact_a links to Rfam database...	0.55	0.49	0.63	55	67441	34	1	31	2	58
ASE_00318	RNaseP_bact_b links to Rfam database...	0.76	0.70	0.83	83	80100	24	5	12	7	35
ASE_00328	RNaseP_bact_b links to Rfam database...	0.74	0.63	0.86	71	72688	24	1	11	12	41
ASE_00332	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	101	81691	25	2	16	7	37
ASE_00335	RNaseP_bact_b links to Rfam database...	0.78	0.72	0.83	84	75365	26	5	12	9	32
ASE_00340	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.79	63	45976	24	4	13	7	22
ASE_00342	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.83	83	62381	19	2	15	2	32
ASE_00353	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	74	57876	25	1	19	5	33
ASE_00361	RNaseP_bact_a links to Rfam database...	0.63	0.54	0.73	68	75373	26	0	25	1	59
ASE_00362	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.78	66	48120	21	1	18	2	25
ASE_00363	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.88	71	51279	14	0	10	4	23
ASE_00364	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	74	54195	21	0	16	5	31
ASE_00366	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.70	61	58566	28	3	23	2	37
ASE_00367	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.79	59	42996	26	0	16	10	27
ASE_00369	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	85	55848	17	0	12	5	22
ASE_00370	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	65	41832	15	0	8	7	19
ASE_00372	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.74	64	51916	25	3	20	2	36
ASE_00374	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.86	66	44773	15	0	11	4	22
ASE_00376	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.76	71	56859	26	1	22	3	34
ASE_00377	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	85	57532	18	2	11	5	22
ASE_00379	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.76	61	45976	23	3	16	4	28
ASE_00382	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.91	69	41829	11	0	7	4	15
ASE_00383	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.86	80	54522	16	1	12	3	25
ASE_00384	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.87	72	48433	20	0	11	9	20
ASE_00386	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	73	50314	21	0	16	5	23
ASE_00387	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	71	55854	22	1	19	2	33
ASE_00388	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	62	45681	20	0	10	10	27
ASE_00390	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.88	65	42121	18	0	9	9	20
ASE_00393	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.74	55	47821	26	1	18	7	38
ASE_00394	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.95	77	46890	7	0	4	3	16
ASE_00395	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	64	41536	26	1	15	10	20
ASE_00396	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	67	41540	15	1	8	6	16
ASE_00397	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.88	78	54526	16	1	10	5	27
ASE_00398	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.88	73	55862	18	0	10	8	31
ASE_00400	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	69	57881	26	1	19	6	37
ASE_00401	RNaseP_bact_a links to Rfam database...	0.63	0.56	0.70	71	76926	33	4	27	2	55
ASE_00402	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	67	42410	12	0	9	3	18
ASE_00403	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.77	67	55858	24	0	20	4	40
ASE_00404	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.84	61	42998	22	0	12	10	24
ASE_00406	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.86	70	48747	21	0	11	10	24
ASE_00411	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.61	47	49378	33	10	20	3	42
ASE_00412	RNaseP_bact_a links to Rfam database...	0.67	0.63	0.73	66	58220	28	3	22	3	39
ASE_00413	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.71	54	44475	26	5	17	4	27
ASE_00415	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	68	54857	23	1	20	2	35
ASE_00416	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	97	77303	29	3	18	8	30
ASE_00419	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.91	81	54857	11	2	6	3	22
ASE_00422	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.83	73	46883	21	3	12	6	21
ASE_00423	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	77	56858	23	3	15	5	32
ASE_00428	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	92	76522	28	3	19	6	33
ASE_00430	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.77	72	46877	23	5	17	1	25
ASE_00437	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.62	67	79293	43	1	40	2	68
ASE_00441	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	77	64174	11	0	10	1	35
ASE_00448	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	76	64166	27	2	17	8	36
ASE_00451	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	88	70769	24	1	18	5	37
RFA_00599	Telomerase-vert links to Rfam database...	0.74	0.74	0.74	82	101364	50	9	20	21	29
RFA_00601	Telomerase-vert links to Rfam database...	0.76	0.75	0.77	85	99124	46	3	23	20	29
RFA_00602	Telomerase-vert links to Rfam database...	0.85	0.84	0.85	98	101360	32	5	12	15	18
TMR_00017	tmRNA links to Rfam database...	0.60	0.55	0.67	56	67077	32	7	21	4	46
TMR_00018	tmRNA links to Rfam database...	0.49	0.49	0.49	45	64529	50	12	34	4	47
TMR_00038	tmRNA links to Rfam database...	0.72	0.67	0.76	74	71156	29	6	17	6	36
TMR_00042	tmRNA links to Rfam database...	0.74	0.69	0.78	68	62748	25	2	17	6	30
TMR_00046	tmRNA links to Rfam database...	0.64	0.60	0.67	58	62749	34	4	24	6	38
TMR_00048	tmRNA links to Rfam database...	0.68	0.66	0.71	63	64891	35	6	20	9	32
TMR_00080	tmRNA links to Rfam database...	0.64	0.53	0.76	51	70433	16	6	10	0	45
TMR_00082	tmRNA links to Rfam database...	0.63	0.54	0.73	52	67825	20	6	13	1	44
TMR_00123	tmRNA links to Rfam database...	0.66	0.60	0.72	61	66345	29	3	21	5	40
TMR_00137	tmRNA links to Rfam database...	0.52	0.47	0.57	42	61001	37	9	23	5	47
TMR_00142	tmRNA links to Rfam database...	0.66	0.65	0.67	66	70778	40	8	24	8	36
TMR_00207	tmRNA links to Rfam database...	0.50	0.47	0.53	48	72300	47	8	34	5	55
TMR_00257	tmRNA links to Rfam database...	0.68	0.59	0.78	58	67087	22	1	15	6	40
TMR_00271	tmRNA links to Rfam database...	0.65	0.62	0.69	56	64180	34	6	19	9	35
TMR_00332	tmRNA links to Rfam database...	0.58	0.55	0.63	54	67075	37	5	27	5	45
TMR_00366	tmRNA links to Rfam database...	0.79	0.76	0.83	76	67804	27	3	13	11	24
TMR_00378	tmRNA links to Rfam database...	0.77	0.75	0.79	73	67804	32	4	15	13	24
TMR_00399	tmRNA links to Rfam database...	0.44	0.41	0.46	39	64896	52	12	33	7	55
TMR_00404	tmRNA links to Rfam database...	0.67	0.66	0.68	61	67438	45	7	22	16	31
TMR_00427	tmRNA links to Rfam database...	0.67	0.60	0.74	58	67450	25	8	12	5	39
TMR_00443	tmRNA links to Rfam database...	0.61	0.57	0.66	59	67071	35	5	26	4	45
TMR_00451	tmRNA links to Rfam database...	0.49	0.46	0.53	41	63469	40	11	25	4	48
TMR_00458	tmRNA links to Rfam database...	0.56	0.49	0.63	46	63473	30	8	19	3	47
TMR_00469	tmRNA links to Rfam database...	0.78	0.74	0.83	74	64531	24	5	10	9	26
TMR_00472	tmRNA links to Rfam database...	0.79	0.73	0.85	71	64536	24	7	6	11	26
TMR_00519	tmRNA links to Rfam database...	0.52	0.48	0.56	46	63108	47	11	25	11	49
TMR_00520	tmRNA links to Rfam database...	0.51	0.48	0.54	48	63101	51	14	27	10	51
TMR_00522	tmRNA links to Rfam database...	0.55	0.52	0.60	50	63106	43	11	23	9	47
TMR_00528	tmRNA links to Rfam database...	0.54	0.52	0.57	50	63102	48	12	26	10	47
TMR_00540	tmRNA links to Rfam database...	0.49	0.44	0.53	46	73450	47	9	31	7	58
TMR_00568	tmRNA links to Rfam database...	0.77	0.69	0.86	68	60647	21	1	10	10	31
TMR_00571	tmRNA links to Rfam database...	0.78	0.73	0.84	72	60640	27	2	12	13	27
TMR_00580	tmRNA links to Rfam database...	0.78	0.73	0.84	73	60639	26	3	11	12	27
TMR_00584	tmRNA links to Rfam database...	0.78	0.71	0.86	69	60995	21	3	8	10	28
TMR_00586	tmRNA links to Rfam database...	0.74	0.70	0.78	68	60988	28	6	13	9	29
TMR_00616	tmRNA links to Rfam database...	0.77	0.72	0.83	71	67075	21	4	11	6	28
TMR_00699	tmRNA links to Rfam database...	0.66	0.58	0.76	59	67083	24	1	18	5	43
TMR_00702	tmRNA links to Rfam database...	0.60	0.51	0.71	51	67089	26	5	16	5	49
TMR_00703	tmRNA links to Rfam database...	0.81	0.73	0.90	72	67448	13	1	7	5	27

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of PETfold_pre2.0(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(seed)

2. Individual counts for PETfold_pre2.0(seed) [ download as .csv ]

Performance of TurboFold(20) - scored lower in this pairwise comparison

1. Total counts & total scores for TurboFold(20)

2. Individual counts for TurboFold(20) [ download as .csv ]