CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	RNAalifold(20)		Carnac(20)
MCC	0.660	>	0.360
Average MCC ± 95% Confidence Intervals	0.661 ± 0.013	>	0.292 ± 0.029
Sensitivity	0.532	>	0.151
Positive Predictive Value	0.819	<	0.857
Total TP	11393	>	3243
Total TN	12420099	<	12430224
Total FP	2840	>	667
Total FP CONTRA	477	>	81
Total FP INCONS	2037	>	458
Total FP COMP	326	>	128
Total FN	10022	<	18172
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of RNAalifold(20) and Carnac(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RNAalifold(20) and Carnac(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for RNAalifold(20) and Carnac(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for RNAalifold(20) and Carnac(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RNAalifold(20) and Carnac(20)).

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Performance of RNAalifold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for RNAalifold(20)

Total Base Pair Counts
Total TP	11393
Total TN	12420099
Total FP	2840
Total FP CONTRA	477
Total FP INCONS	2037
Total FP COMP	326
Total FN	10022

Total Scores
MCC	0.660
Average MCC ± 95% Confidence Intervals	0.661 ± 0.013
Sensitivity	0.532
Positive Predictive Value	0.819
Nr of predictions	204

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2. Individual counts for RNAalifold(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.58	0.45	0.75	44	47836	15	1	14	0	53
ASE_00005	RNaseP_bact_a links to Rfam database...	0.64	0.49	0.85	57	57903	10	1	9	0	60
ASE_00006	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.83	52	47523	12	0	11	1	41
ASE_00007	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.90	69	59608	8	1	7	0	41
ASE_00012	RNaseP_bact_a links to Rfam database...	0.55	0.45	0.68	55	73839	30	1	25	4	68
ASE_00018	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	80	80513	8	3	5	0	54
ASE_00020	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.70	44	73857	20	7	12	1	82
ASE_00021	RNaseP_bact_a links to Rfam database...	0.54	0.41	0.73	65	104107	28	4	20	4	95
ASE_00022	RNaseP_bact_b links to Rfam database...	0.74	0.62	0.89	77	82941	16	0	10	6	47
ASE_00028	RNaseP_bact_b links to Rfam database...	0.76	0.62	0.93	78	84582	10	1	5	4	48
ASE_00035	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.83	64	70423	19	2	11	6	54
ASE_00037	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	68	59258	18	0	14	4	42
ASE_00038	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.81	52	53564	12	1	11	0	49
ASE_00040	RNaseP_bact_a links to Rfam database...	0.69	0.55	0.86	73	78918	13	1	11	1	60
ASE_00041	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.82	70	57545	15	0	15	0	38
ASE_00042	RNaseP_bact_a links to Rfam database...	0.52	0.39	0.70	57	90018	25	1	24	0	88
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	66	54540	9	1	8	0	39
ASE_00064	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	54	45387	13	0	10	3	35
ASE_00068	RNaseP_bact_a links to Rfam database...	0.73	0.55	0.96	47	37626	2	2	0	0	38
ASE_00074	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	72	67812	14	0	12	2	47
ASE_00075	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	65	108725	27	3	18	6	97
ASE_00077	RNaseP_bact_a links to Rfam database...	0.79	0.65	0.97	56	45092	5	1	1	3	30
ASE_00078	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.84	58	43002	11	3	8	0	25
ASE_00080	RNaseP_bact_a links to Rfam database...	0.43	0.32	0.59	39	71565	27	3	24	0	84
ASE_00081	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.93	54	49712	4	0	4	0	43
ASE_00082	RNaseP_bact_a links to Rfam database...	0.49	0.34	0.72	39	70446	21	1	14	6	77
ASE_00083	RNaseP_bact_a links to Rfam database...	0.77	0.62	0.96	68	62410	4	2	1	1	42
ASE_00084	RNaseP_bact_a links to Rfam database...	0.61	0.51	0.75	50	53561	17	4	13	0	49
ASE_00087	RNaseP_bact_a links to Rfam database...	0.64	0.44	0.93	64	88341	5	0	5	0	80
ASE_00090	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.93	56	55551	4	0	4	0	45
ASE_00092	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.93	65	63476	6	1	4	1	48
ASE_00099	RNaseP_bact_a links to Rfam database...	0.76	0.64	0.90	77	64534	11	0	9	2	43
ASE_00104	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.81	64	64182	15	2	13	0	55
ASE_00105	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.78	54	64192	18	2	13	3	57
ASE_00107	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.90	74	73071	8	0	8	0	53
ASE_00115	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	61	54546	12	1	7	4	40
ASE_00118	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.78	45	60668	14	4	9	1	57
ASE_00119	RNaseP_bact_a links to Rfam database...	0.57	0.41	0.80	44	62780	11	3	8	0	64
ASE_00123	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	46	38448	9	2	7	0	39
ASE_00125	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.89	48	39286	6	0	6	0	40
ASE_00126	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.94	58	40408	4	0	4	0	24
ASE_00128	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	60	53235	6	0	6	0	40
ASE_00129	RNaseP_bact_a links to Rfam database...	0.65	0.49	0.86	54	62772	9	3	6	0	57
ASE_00131	RNaseP_bact_a links to Rfam database...	0.62	0.48	0.80	41	39289	10	3	7	0	44
ASE_00134	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.80	49	50342	12	3	9	0	46
ASE_00135	RNaseP_bact_a links to Rfam database...	0.49	0.38	0.63	41	63125	24	1	23	0	68
ASE_00136	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.95	62	48140	3	2	1	0	30
ASE_00137	RNaseP_bact_a links to Rfam database...	0.62	0.45	0.85	44	48464	9	2	6	1	54
ASE_00138	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	50	40408	15	0	12	3	31
ASE_00140	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	64	70807	5	1	4	0	61
ASE_00142	RNaseP_bact_a links to Rfam database...	0.70	0.58	0.84	71	67076	16	0	14	2	51
ASE_00146	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	83	70785	11	1	7	3	41
ASE_00153	RNaseP_nuc links to Rfam database...	0.41	0.34	0.50	25	57580	28	1	24	3	48
ASE_00163	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.79	48	53240	13	4	9	0	45
ASE_00165	RNaseP_bact_a links to Rfam database...	0.66	0.48	0.91	48	52922	6	1	4	1	53
ASE_00170	RNaseP_bact_a links to Rfam database...	0.62	0.53	0.74	49	48762	18	4	13	1	44
ASE_00171	RNaseP_bact_a links to Rfam database...	0.60	0.46	0.80	43	48462	11	4	7	0	51
ASE_00172	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.95	71	58921	7	3	1	3	35
ASE_00174	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.75	45	61015	15	2	13	0	64
ASE_00175	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.74	54	59958	19	3	16	0	53
ASE_00179	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.90	57	44190	6	2	4	0	27
ASE_00180	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.82	53	51295	12	4	8	0	47
ASE_00181	RNaseP_bact_a links to Rfam database...	0.58	0.42	0.80	45	57574	12	3	8	1	61
ASE_00182	RNaseP_bact_a links to Rfam database...	0.44	0.29	0.68	39	84198	18	4	14	0	97
ASE_00183	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.79	44	61369	12	4	8	0	69
ASE_00184	RNaseP_bact_a links to Rfam database...	0.65	0.50	0.84	51	54554	10	3	7	0	51
ASE_00185	RNaseP_bact_a links to Rfam database...	0.70	0.51	0.97	65	73469	2	1	1	0	63
ASE_00186	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.79	65	78921	19	2	15	2	67
ASE_00190	RNaseP_bact_b links to Rfam database...	0.64	0.52	0.78	47	45391	17	0	13	4	43
ASE_00197	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.69	53	89176	24	0	24	0	92
ASE_00198	RNaseP_bact_a links to Rfam database...	0.68	0.54	0.86	55	52586	9	1	8	0	47
ASE_00203	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	49	46606	10	2	8	0	47
ASE_00212	RNaseP_bact_a links to Rfam database...	0.64	0.49	0.84	73	93874	17	0	14	3	75
ASE_00214	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	53	56223	5	0	4	1	50
ASE_00215	RNaseP_bact_a links to Rfam database...	0.69	0.49	0.96	49	48465	2	2	0	0	50
ASE_00216	RNaseP_bact_a links to Rfam database...	0.77	0.61	0.96	50	39288	3	0	2	1	32
ASE_00217	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	60	40404	7	2	4	1	30
ASE_00221	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	80	64530	10	1	9	0	37
ASE_00228	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.79	53	46904	15	5	9	1	33
ASE_00229	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	53	42427	8	0	6	2	34
ASE_00231	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.76	44	47837	18	0	14	4	52
ASE_00232	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	55	38444	4	0	4	0	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.50	0.32	0.77	41	75413	12	3	9	0	88
ASE_00238	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.78	52	64194	16	0	15	1	62
ASE_00241	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	52	43893	14	3	8	3	35
ASE_00242	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	69	60996	11	1	9	1	43
ASE_00248	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	71	62399	11	3	8	0	43
ASE_00254	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.92	56	36795	6	0	5	1	26
ASE_00255	RNaseP_bact_a links to Rfam database...	0.49	0.40	0.60	52	74605	35	1	33	1	78
ASE_00257	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.75	50	50973	17	3	14	0	47
ASE_00263	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.85	53	70438	9	1	8	0	67
ASE_00267	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.89	66	45076	9	3	5	1	22
ASE_00270	RNaseP_bact_a links to Rfam database...	0.30	0.18	0.50	23	72344	25	1	22	2	105
ASE_00274	RNaseP_bact_a links to Rfam database...	0.50	0.36	0.69	37	55557	17	5	12	0	66
ASE_00277	RNaseP_bact_a links to Rfam database...	0.48	0.37	0.62	34	48150	21	4	17	0	57
ASE_00279	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	61	53234	6	0	6	0	40
ASE_00280	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.84	54	51939	10	1	9	0	44
ASE_00281	RNaseP_bact_a links to Rfam database...	0.87	0.76	0.99	67	44483	1	0	1	0	21
ASE_00282	RNaseP_bact_a links to Rfam database...	0.59	0.43	0.82	54	77749	12	3	9	0	73
ASE_00283	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	55	61710	11	2	9	0	52
ASE_00284	RNaseP_bact_a links to Rfam database...	0.70	0.53	0.92	57	58249	5	0	5	0	51
ASE_00285	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	58	68937	11	2	9	0	64
ASE_00286	RNaseP_bact_a links to Rfam database...	0.79	0.66	0.94	61	46600	4	0	4	0	31
ASE_00287	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	49	54888	9	1	8	0	54
ASE_00292	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.85	77	81719	14	3	11	0	61
ASE_00294	RNaseP_bact_a links to Rfam database...	0.64	0.47	0.87	81	114388	14	2	10	2	90
ASE_00296	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.81	68	91722	16	3	13	0	77
ASE_00297	RNaseP_bact_a links to Rfam database...	0.69	0.52	0.93	51	52920	7	0	4	3	47
ASE_00298	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	58	67458	12	5	7	0	55
ASE_00318	RNaseP_bact_b links to Rfam database...	0.74	0.60	0.91	71	80122	17	2	5	10	47
ASE_00328	RNaseP_bact_b links to Rfam database...	0.71	0.64	0.77	72	72678	27	5	16	6	40
ASE_00332	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	87	81715	8	0	8	0	51
ASE_00335	RNaseP_bact_b links to Rfam database...	0.70	0.62	0.80	72	75376	24	5	13	6	44
ASE_00340	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.76	47	45994	15	7	8	0	38
ASE_00342	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	70	62400	14	3	8	3	45
ASE_00353	RNaseP_bact_a links to Rfam database...	0.65	0.50	0.84	53	57907	10	1	9	0	54
ASE_00361	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	65	75396	5	1	4	0	62
ASE_00362	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.90	57	48142	6	2	4	0	34
ASE_00363	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.83	59	51289	12	2	10	0	35
ASE_00364	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.77	41	54232	12	1	11	0	64
ASE_00366	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.71	36	58602	16	1	14	1	62
ASE_00367	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	56	43011	4	0	4	0	30
ASE_00369	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	61	55872	12	3	9	0	46
ASE_00370	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.84	43	41854	8	0	8	0	41
ASE_00372	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.87	62	51932	9	0	9	0	38
ASE_00374	RNaseP_bact_a links to Rfam database...	0.74	0.59	0.93	52	44794	4	0	4	0	36
ASE_00376	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.92	61	56887	6	0	5	1	44
ASE_00377	RNaseP_bact_a links to Rfam database...	0.73	0.59	0.90	63	57560	7	0	7	0	44
ASE_00379	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.90	55	45995	6	2	4	0	34
ASE_00382	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	50	41844	11	2	9	0	34
ASE_00383	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	69	54538	11	3	5	3	36
ASE_00384	RNaseP_bact_a links to Rfam database...	0.74	0.59	0.93	54	48458	4	0	4	0	38
ASE_00386	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.90	61	50335	7	2	5	0	35
ASE_00387	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	63	55875	7	0	7	0	41
ASE_00388	RNaseP_bact_a links to Rfam database...	0.73	0.61	0.87	54	45691	10	1	7	2	35
ASE_00390	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	51	42137	7	0	7	0	34
ASE_00393	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.78	54	47826	16	2	13	1	39
ASE_00394	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.83	52	46908	11	3	8	0	41
ASE_00395	RNaseP_bact_a links to Rfam database...	0.87	0.79	0.97	66	41548	2	0	2	0	18
ASE_00396	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	52	41557	7	0	7	0	31
ASE_00397	RNaseP_bact_a links to Rfam database...	0.78	0.64	0.96	67	54545	5	3	0	2	38
ASE_00398	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.82	50	55884	12	3	8	1	54
ASE_00400	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.92	70	57894	11	3	3	5	36
ASE_00401	RNaseP_bact_a links to Rfam database...	0.54	0.37	0.81	46	76971	11	3	8	0	80
ASE_00402	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.93	56	42426	4	0	4	0	29
ASE_00403	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	55	55886	4	0	4	0	52
ASE_00404	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	54	43013	5	1	3	1	31
ASE_00406	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.84	53	48765	10	1	9	0	41
ASE_00411	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.79	46	49397	12	7	5	0	43
ASE_00412	RNaseP_bact_a links to Rfam database...	0.61	0.49	0.76	51	58244	20	0	16	4	54
ASE_00413	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.70	42	44491	21	4	14	3	39
ASE_00415	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	41	54892	14	0	13	1	62
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	76	77329	16	2	14	0	51
ASE_00419	RNaseP_bact_a links to Rfam database...	0.56	0.40	0.79	41	54894	11	2	9	0	62
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	55	46904	13	0	12	1	39
ASE_00423	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.80	67	56869	18	3	14	1	42
ASE_00428	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.80	68	76551	17	1	16	0	57
ASE_00430	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.83	55	46905	12	0	11	1	42
ASE_00437	RNaseP_bact_a links to Rfam database...	0.45	0.36	0.58	48	79318	35	2	33	0	87
ASE_00441	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.80	43	64207	15	0	11	4	69
ASE_00448	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	78	64170	13	1	12	0	34
ASE_00451	RNaseP_bact_a links to Rfam database...	0.70	0.56	0.86	70	70795	11	3	8	0	55
RFA_00599	Telomerase-vert links to Rfam database...	0.75	0.65	0.87	72	101392	18	0	11	7	39
RFA_00601	Telomerase-vert links to Rfam database...	0.75	0.66	0.85	75	99147	17	0	13	4	39
RFA_00602	Telomerase-vert links to Rfam database...	0.65	0.54	0.78	63	101394	21	0	18	3	53
TMR_00017	tmRNA links to Rfam database...	0.68	0.54	0.85	55	67096	14	0	10	4	47
TMR_00018	tmRNA links to Rfam database...	0.62	0.53	0.72	49	64552	23	7	12	4	43
TMR_00038	tmRNA links to Rfam database...	0.65	0.53	0.81	58	71181	14	4	10	0	52
TMR_00042	tmRNA links to Rfam database...	0.68	0.53	0.87	52	62775	9	1	7	1	46
TMR_00046	tmRNA links to Rfam database...	0.56	0.49	0.64	47	62761	28	4	23	1	49
TMR_00048	tmRNA links to Rfam database...	0.64	0.52	0.80	49	64919	13	5	7	1	46
TMR_00080	tmRNA links to Rfam database...	0.57	0.50	0.64	48	70425	33	8	19	6	48
TMR_00082	tmRNA links to Rfam database...	0.59	0.50	0.69	48	67826	28	11	11	6	48
TMR_00123	tmRNA links to Rfam database...	0.70	0.55	0.89	56	66367	12	1	6	5	45
TMR_00137	tmRNA links to Rfam database...	0.56	0.48	0.66	43	61010	24	11	11	2	46
TMR_00142	tmRNA links to Rfam database...	0.63	0.52	0.77	53	70807	22	4	12	6	49
TMR_00207	tmRNA links to Rfam database...	0.66	0.54	0.81	56	72321	19	7	6	6	47
TMR_00257	tmRNA links to Rfam database...	0.75	0.63	0.89	62	67091	15	4	4	7	36
TMR_00271	tmRNA links to Rfam database...	0.48	0.37	0.63	34	64207	26	5	15	6	57
TMR_00332	tmRNA links to Rfam database...	0.64	0.52	0.78	51	67096	19	1	13	5	48
TMR_00366	tmRNA links to Rfam database...	0.55	0.48	0.62	48	67819	29	8	21	0	52
TMR_00378	tmRNA links to Rfam database...	0.49	0.41	0.59	40	67828	29	8	20	1	57
TMR_00399	tmRNA links to Rfam database...	0.63	0.56	0.70	53	64904	27	6	17	4	41
TMR_00404	tmRNA links to Rfam database...	0.56	0.47	0.68	43	67465	20	3	17	0	49
TMR_00427	tmRNA links to Rfam database...	0.50	0.36	0.69	35	67477	16	7	9	0	62
TMR_00443	tmRNA links to Rfam database...	0.73	0.63	0.86	65	67085	15	6	5	4	39
TMR_00451	tmRNA links to Rfam database...	0.57	0.51	0.65	45	63477	30	10	14	6	44
TMR_00458	tmRNA links to Rfam database...	0.54	0.46	0.64	43	63479	28	8	16	4	50
TMR_00469	tmRNA links to Rfam database...	0.70	0.60	0.81	60	64546	14	7	7	0	40
TMR_00472	tmRNA links to Rfam database...	0.65	0.56	0.75	54	64548	19	8	10	1	43
TMR_00519	tmRNA links to Rfam database...	0.57	0.48	0.67	46	63121	25	7	16	2	49
TMR_00520	tmRNA links to Rfam database...	0.53	0.43	0.65	43	63124	27	8	15	4	56
TMR_00522	tmRNA links to Rfam database...	0.52	0.42	0.64	41	63126	27	6	17	4	56
TMR_00528	tmRNA links to Rfam database...	0.54	0.47	0.62	46	63116	34	9	19	6	51
TMR_00540	tmRNA links to Rfam database...	0.66	0.54	0.81	56	73467	17	5	8	4	48
TMR_00568	tmRNA links to Rfam database...	0.73	0.67	0.80	66	60644	22	3	13	6	33
TMR_00571	tmRNA links to Rfam database...	0.75	0.69	0.83	68	60644	20	3	11	6	31
TMR_00580	tmRNA links to Rfam database...	0.74	0.65	0.83	65	60648	19	1	12	6	35
TMR_00584	tmRNA links to Rfam database...	0.75	0.68	0.83	66	60995	17	2	12	3	31
TMR_00586	tmRNA links to Rfam database...	0.69	0.64	0.76	62	60993	26	8	12	6	35
TMR_00616	tmRNA links to Rfam database...	0.64	0.55	0.76	54	67090	17	7	10	0	45
TMR_00699	tmRNA links to Rfam database...	0.68	0.54	0.85	55	67096	15	1	9	5	47
TMR_00702	tmRNA links to Rfam database...	0.54	0.43	0.68	43	67098	24	2	18	4	57
TMR_00703	tmRNA links to Rfam database...	0.67	0.54	0.83	53	67464	15	1	10	4	46

^top

Performance of Carnac(20) - scored lower in this pairwise comparison

1. Total counts & total scores for Carnac(20)

Total Base Pair Counts
Total TP	3243
Total TN	12430224
Total FP	667
Total FP CONTRA	81
Total FP INCONS	458
Total FP COMP	128
Total FN	18172

Total Scores
MCC	0.360
Average MCC ± 95% Confidence Intervals	0.292 ± 0.029
Sensitivity	0.151
Positive Predictive Value	0.857
Nr of predictions	204

^top

2. Individual counts for Carnac(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.51	0.26	1.00	25	47870	0	0	0	0	72
ASE_00005	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	25	57944	1	1	0	0	92
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47586	0	0	0	0	93
ASE_00007	RNaseP_bact_a links to Rfam database...	0.40	0.17	0.95	19	59665	1	0	1	0	91
ASE_00012	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.77	58	73845	21	1	16	4	65
ASE_00018	RNaseP_bact_a links to Rfam database...	0.53	0.33	0.86	44	80550	8	1	6	1	90
ASE_00020	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73920	0	0	0	0	126
ASE_00021	RNaseP_bact_a links to Rfam database...	0.47	0.33	0.69	52	104121	28	1	22	5	108
ASE_00022	RNaseP_bact_b links to Rfam database...	0.54	0.33	0.87	41	82981	7	0	6	1	83
ASE_00028	RNaseP_bact_b links to Rfam database...	0.45	0.20	1.00	25	84641	0	0	0	0	101
ASE_00035	RNaseP_bact_a links to Rfam database...	0.50	0.31	0.80	37	70454	12	1	8	3	81
ASE_00037	RNaseP_bact_a links to Rfam database...	0.27	0.07	1.00	8	59332	0	0	0	0	102
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53628	0	0	0	0	101
ASE_00040	RNaseP_bact_a links to Rfam database...	0.42	0.17	1.00	23	78980	4	0	0	4	110
ASE_00041	RNaseP_bact_a links to Rfam database...	0.40	0.19	0.84	21	57605	4	0	4	0	87
ASE_00042	RNaseP_bact_a links to Rfam database...	0.25	0.06	1.00	9	90091	0	0	0	0	136
ASE_00044	RNaseP_bact_a links to Rfam database...	0.42	0.20	0.88	21	54591	7	0	3	4	84
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	89
ASE_00068	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	37675	0	0	0	0	85
ASE_00074	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	25	67870	1	1	0	0	94
ASE_00075	RNaseP_bact_a links to Rfam database...	0.57	0.36	0.89	59	108745	11	1	6	4	103
ASE_00077	RNaseP_bact_a links to Rfam database...	0.34	0.13	0.92	11	45138	1	0	1	0	75
ASE_00078	RNaseP_bact_a links to Rfam database...	0.50	0.25	1.00	21	43050	1	0	0	1	62
ASE_00080	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.31	4	71618	9	0	9	0	119
ASE_00081	RNaseP_bact_a links to Rfam database...	0.15	0.05	0.45	5	49759	7	0	6	1	92
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	116
ASE_00083	RNaseP_bact_a links to Rfam database...	0.29	0.08	1.00	9	62472	0	0	0	0	101
ASE_00084	RNaseP_bact_a links to Rfam database...	0.40	0.16	1.00	16	53612	1	0	0	1	83
ASE_00087	RNaseP_bact_a links to Rfam database...	0.19	0.03	1.00	5	88405	1	0	0	1	139
ASE_00090	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55611	0	0	0	0	101
ASE_00092	RNaseP_bact_a links to Rfam database...	0.39	0.17	0.90	19	63525	3	0	2	1	94
ASE_00099	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	25	64594	1	1	0	0	95
ASE_00104	RNaseP_bact_a links to Rfam database...	0.42	0.19	0.92	23	64236	2	1	1	0	96
ASE_00105	RNaseP_bact_a links to Rfam database...	0.36	0.20	0.67	22	64228	12	0	11	1	89
ASE_00107	RNaseP_bact_a links to Rfam database...	0.54	0.35	0.83	44	73100	10	1	8	1	83
ASE_00115	RNaseP_bact_a links to Rfam database...	0.19	0.05	0.71	5	54608	3	0	2	1	96
ASE_00118	RNaseP_bact_a links to Rfam database...	0.33	0.11	1.00	11	60715	1	0	0	1	91
ASE_00119	RNaseP_bact_a links to Rfam database...	0.36	0.13	1.00	14	62821	0	0	0	0	94
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	82
ASE_00128	RNaseP_bact_a links to Rfam database...	0.26	0.07	1.00	7	53294	0	0	0	0	93
ASE_00129	RNaseP_bact_a links to Rfam database...	0.30	0.11	0.86	12	62821	2	0	2	0	99
ASE_00131	RNaseP_bact_a links to Rfam database...	0.31	0.09	1.00	8	39332	0	0	0	0	77
ASE_00134	RNaseP_bact_a links to Rfam database...	0.25	0.06	1.00	6	50397	0	0	0	0	89
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63190	0	0	0	0	109
ASE_00136	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	92
ASE_00137	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	98
ASE_00138	RNaseP_bact_a links to Rfam database...	0.22	0.05	1.00	4	40466	0	0	0	0	77
ASE_00140	RNaseP_bact_a links to Rfam database...	0.35	0.14	0.86	18	70855	3	0	3	0	107
ASE_00142	RNaseP_bact_a links to Rfam database...	0.41	0.17	0.95	21	67139	1	1	0	0	101
ASE_00146	RNaseP_bact_a links to Rfam database...	0.40	0.18	0.92	22	70852	2	0	2	0	102
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57626	4	1	3	0	73
ASE_00163	RNaseP_bact_a links to Rfam database...	0.17	0.04	0.67	4	53295	2	0	2	0	89
ASE_00165	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52975	0	0	0	0	101
ASE_00170	RNaseP_bact_a links to Rfam database...	0.52	0.27	1.00	25	48803	1	0	0	1	68
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48512	4	0	4	0	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.27	0.08	1.00	8	58988	0	0	0	0	98
ASE_00174	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	109
ASE_00175	RNaseP_bact_a links to Rfam database...	0.20	0.05	0.83	5	60025	2	0	1	1	102
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44253	0	0	0	0	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51360	0	0	0	0	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.22	0.05	1.00	5	57625	0	0	0	0	101
ASE_00182	RNaseP_bact_a links to Rfam database...	0.19	0.04	0.86	6	84248	1	0	1	0	130
ASE_00183	RNaseP_bact_a links to Rfam database...	0.34	0.14	0.80	16	61405	4	0	4	0	97
ASE_00184	RNaseP_bact_a links to Rfam database...	0.33	0.11	1.00	11	54604	1	0	0	1	91
ASE_00185	RNaseP_bact_a links to Rfam database...	0.37	0.14	1.00	18	73518	0	0	0	0	110
ASE_00186	RNaseP_bact_a links to Rfam database...	0.45	0.22	0.94	29	78972	7	1	1	5	103
ASE_00190	RNaseP_bact_b links to Rfam database...	0.29	0.11	0.77	10	45438	6	0	3	3	80
ASE_00197	RNaseP_bact_a links to Rfam database...	0.33	0.12	0.94	17	89235	5	1	0	4	128
ASE_00198	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.67	4	52644	2	0	2	0	98
ASE_00203	RNaseP_bact_a links to Rfam database...	0.35	0.13	1.00	12	46653	0	0	0	0	84
ASE_00212	RNaseP_bact_a links to Rfam database...	0.45	0.24	0.85	35	93920	11	1	5	5	113
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56280	0	0	0	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.19	0.07	0.54	7	48503	6	0	6	0	92
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.42	0.19	0.94	17	40452	1	1	0	0	73
ASE_00221	RNaseP_bact_a links to Rfam database...	0.36	0.15	0.89	17	64601	2	0	2	0	100
ASE_00228	RNaseP_bact_a links to Rfam database...	0.41	0.19	0.89	16	46953	3	0	2	1	70
ASE_00229	RNaseP_bact_a links to Rfam database...	0.28	0.08	1.00	7	42479	0	0	0	0	80
ASE_00231	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	96
ASE_00232	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	84
ASE_00234	RNaseP_bact_a links to Rfam database...	0.38	0.18	0.82	23	75438	6	0	5	1	106
ASE_00238	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.71	5	64254	2	0	2	0	109
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43956	0	0	0	0	87
ASE_00242	RNaseP_bact_a links to Rfam database...	0.44	0.21	0.96	23	61051	1	0	1	0	89
ASE_00248	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.94	63	62414	5	0	4	1	51
ASE_00254	RNaseP_bact_a links to Rfam database...	0.54	0.30	0.96	25	36830	1	0	1	0	57
ASE_00255	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.84	71	74606	16	1	13	2	59
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51040	0	0	0	0	97
ASE_00263	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	120
ASE_00267	RNaseP_bact_a links to Rfam database...	0.46	0.22	1.00	19	45131	1	0	0	1	69
ASE_00270	RNaseP_bact_a links to Rfam database...	0.30	0.10	0.87	13	72375	2	0	2	0	115
ASE_00274	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.80	4	55606	1	0	1	0	99
ASE_00277	RNaseP_bact_a links to Rfam database...	0.27	0.10	0.75	9	48193	3	0	3	0	82
ASE_00279	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	6	53295	0	0	0	0	95
ASE_00280	RNaseP_bact_a links to Rfam database...	0.40	0.20	0.80	20	51978	5	0	5	0	78
ASE_00281	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	5	44546	1	0	0	1	83
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77815	0	0	0	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.18	0.05	0.71	5	61769	3	0	2	1	102
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58311	0	0	0	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.50	0.27	0.94	33	68971	3	0	2	1	89
ASE_00286	RNaseP_bact_a links to Rfam database...	0.19	0.04	0.80	4	46660	1	0	1	0	88
ASE_00287	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.80	4	54941	1	0	1	0	99
ASE_00292	RNaseP_bact_a links to Rfam database...	0.53	0.32	0.88	44	81760	7	1	5	1	94
ASE_00294	RNaseP_bact_a links to Rfam database...	0.47	0.22	0.97	38	114442	1	1	0	0	133
ASE_00296	RNaseP_bact_a links to Rfam database...	0.42	0.20	0.88	29	91773	5	1	3	1	116
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52975	0	0	0	0	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67528	0	0	0	0	113
ASE_00318	RNaseP_bact_b links to Rfam database...	0.55	0.32	0.95	38	80160	4	0	2	2	80
ASE_00328	RNaseP_bact_b links to Rfam database...	0.73	0.55	0.97	62	72707	8	0	2	6	50
ASE_00332	RNaseP_bact_a links to Rfam database...	0.49	0.25	0.95	35	81773	3	0	2	1	103
ASE_00335	RNaseP_bact_b links to Rfam database...	0.65	0.46	0.93	53	75409	9	0	4	5	63
ASE_00340	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46056	3	0	0	3	85
ASE_00342	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	24	62456	1	1	0	0	91
ASE_00353	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	107
ASE_00361	RNaseP_bact_a links to Rfam database...	0.18	0.03	1.00	4	75462	0	0	0	0	123
ASE_00362	RNaseP_bact_a links to Rfam database...	0.23	0.05	1.00	5	48200	1	0	0	1	86
ASE_00363	RNaseP_bact_a links to Rfam database...	0.33	0.12	0.92	11	51348	2	0	1	1	83
ASE_00364	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	105
ASE_00366	RNaseP_bact_a links to Rfam database...	0.23	0.08	0.67	8	58641	4	0	4	0	90
ASE_00367	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	86
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00372	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.80	4	51998	1	0	1	0	96
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44850	0	0	0	0	88
ASE_00376	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.67	4	56947	2	0	2	0	101
ASE_00377	RNaseP_bact_a links to Rfam database...	0.24	0.07	0.80	8	57620	3	0	2	1	99
ASE_00379	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	5	46051	0	0	0	0	84
ASE_00382	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00383	RNaseP_bact_a links to Rfam database...	0.19	0.04	1.00	4	54611	0	0	0	0	101
ASE_00384	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	92
ASE_00386	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50403	0	0	0	0	96
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.44	0.20	0.95	18	45734	2	0	1	1	71
ASE_00390	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42195	0	0	0	0	85
ASE_00393	RNaseP_bact_a links to Rfam database...	0.39	0.16	0.94	15	47879	1	0	1	0	78
ASE_00394	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	93
ASE_00395	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	5	41611	1	0	0	1	79
ASE_00396	RNaseP_bact_a links to Rfam database...	0.36	0.14	0.92	12	41603	1	0	1	0	71
ASE_00397	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00398	RNaseP_bact_a links to Rfam database...	0.43	0.18	1.00	19	55926	1	0	0	1	85
ASE_00400	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.94	33	57935	2	0	2	0	73
ASE_00401	RNaseP_bact_a links to Rfam database...	0.15	0.03	0.67	4	77022	2	0	2	0	122
ASE_00402	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42486	0	0	0	0	85
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	85
ASE_00406	RNaseP_bact_a links to Rfam database...	0.44	0.23	0.85	22	48802	7	0	4	3	72
ASE_00411	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.74	20	49428	8	0	7	1	69
ASE_00412	RNaseP_bact_a links to Rfam database...	0.19	0.08	0.47	8	58294	10	0	9	1	97
ASE_00413	RNaseP_bact_a links to Rfam database...	0.33	0.12	0.91	10	44540	1	0	1	0	71
ASE_00415	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.67	4	54940	2	0	2	0	99
ASE_00416	RNaseP_bact_a links to Rfam database...	0.40	0.18	0.88	23	77395	6	1	2	3	104
ASE_00419	RNaseP_bact_a links to Rfam database...	0.39	0.16	1.00	16	54930	1	0	0	1	87
ASE_00422	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	94
ASE_00423	RNaseP_bact_a links to Rfam database...	0.57	0.37	0.89	40	56908	6	1	4	1	69
ASE_00428	RNaseP_bact_a links to Rfam database...	0.43	0.19	0.96	24	76611	2	1	0	1	101
ASE_00430	RNaseP_bact_a links to Rfam database...	0.49	0.24	1.00	23	46948	0	0	0	0	74
ASE_00437	RNaseP_bact_a links to Rfam database...	0.22	0.10	0.52	13	79376	12	1	11	0	122
ASE_00441	RNaseP_bact_a links to Rfam database...	0.41	0.17	1.00	19	64242	0	0	0	0	93
ASE_00448	RNaseP_bact_a links to Rfam database...	0.55	0.33	0.93	37	64221	8	1	2	5	75
ASE_00451	RNaseP_bact_a links to Rfam database...	0.47	0.24	0.91	30	70843	3	1	2	0	95
RFA_00599	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	111
RFA_00601	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	99235	0	0	0	0	114
RFA_00602	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	116
TMR_00017	tmRNA links to Rfam database...	0.51	0.35	0.75	36	67113	12	1	11	0	66
TMR_00018	tmRNA links to Rfam database...	0.48	0.34	0.69	31	64575	14	3	11	0	61
TMR_00038	tmRNA links to Rfam database...	0.33	0.11	1.00	12	71241	0	0	0	0	98
TMR_00042	tmRNA links to Rfam database...	0.55	0.35	0.87	34	62796	6	1	4	1	64
TMR_00046	tmRNA links to Rfam database...	0.59	0.35	1.00	34	62801	0	0	0	0	62
TMR_00048	tmRNA links to Rfam database...	0.43	0.26	0.71	25	64945	13	1	9	3	70
TMR_00080	tmRNA links to Rfam database...	0.27	0.17	0.44	16	70464	20	7	13	0	80
TMR_00082	tmRNA links to Rfam database...	0.48	0.31	0.75	30	67856	11	5	5	1	66
TMR_00123	tmRNA links to Rfam database...	0.36	0.13	1.00	13	66417	0	0	0	0	88
TMR_00137	tmRNA links to Rfam database...	0.44	0.19	1.00	17	61058	0	0	0	0	72
TMR_00142	tmRNA links to Rfam database...	0.41	0.20	0.87	20	70853	3	0	3	0	82
TMR_00207	tmRNA links to Rfam database...	0.41	0.25	0.67	26	72351	13	2	11	0	77
TMR_00257	tmRNA links to Rfam database...	0.56	0.35	0.92	34	67124	4	2	1	1	64
TMR_00271	tmRNA links to Rfam database...	0.37	0.21	0.66	19	64232	14	4	6	4	72
TMR_00332	tmRNA links to Rfam database...	0.55	0.33	0.92	33	67125	3	2	1	0	66
TMR_00366	tmRNA links to Rfam database...	0.46	0.22	0.96	22	67873	1	0	1	0	78
TMR_00378	tmRNA links to Rfam database...	0.47	0.23	0.96	22	67873	1	0	1	0	75
TMR_00399	tmRNA links to Rfam database...	0.39	0.26	0.59	24	64939	17	5	12	0	70
TMR_00404	tmRNA links to Rfam database...	0.63	0.41	0.95	38	67488	2	1	1	0	54
TMR_00427	tmRNA links to Rfam database...	0.23	0.05	1.00	5	67523	0	0	0	0	92
TMR_00443	tmRNA links to Rfam database...	0.64	0.50	0.81	52	67097	12	1	11	0	52
TMR_00451	tmRNA links to Rfam database...	0.52	0.31	0.85	28	63513	5	0	5	0	61
TMR_00458	tmRNA links to Rfam database...	0.59	0.38	0.92	35	63508	3	2	1	0	58
TMR_00469	tmRNA links to Rfam database...	0.41	0.17	1.00	17	64603	0	0	0	0	83
TMR_00472	tmRNA links to Rfam database...	0.49	0.24	1.00	23	64597	0	0	0	0	74
TMR_00519	tmRNA links to Rfam database...	0.47	0.23	0.96	22	63167	1	1	0	0	73
TMR_00520	tmRNA links to Rfam database...	0.48	0.23	1.00	23	63167	0	0	0	0	76
TMR_00522	tmRNA links to Rfam database...	0.27	0.07	1.00	7	63183	0	0	0	0	90
TMR_00528	tmRNA links to Rfam database...	0.27	0.07	1.00	7	63183	0	0	0	0	90
TMR_00540	tmRNA links to Rfam database...	0.61	0.40	0.91	42	73490	4	1	3	0	62
TMR_00568	tmRNA links to Rfam database...	0.58	0.42	0.79	42	60673	13	1	10	2	57
TMR_00571	tmRNA links to Rfam database...	0.63	0.46	0.85	46	60672	11	1	7	3	53
TMR_00580	tmRNA links to Rfam database...	0.58	0.42	0.81	42	60674	13	1	9	3	58
TMR_00584	tmRNA links to Rfam database...	0.65	0.46	0.92	45	61026	6	0	4	2	52
TMR_00586	tmRNA links to Rfam database...	0.53	0.39	0.72	38	61022	17	4	11	2	59
TMR_00616	tmRNA links to Rfam database...	0.41	0.17	1.00	17	67144	0	0	0	0	82
TMR_00699	tmRNA links to Rfam database...	0.42	0.25	0.74	25	67127	9	3	6	0	77
TMR_00702	tmRNA links to Rfam database...	0.38	0.20	0.71	20	67133	9	2	6	1	80
TMR_00703	tmRNA links to Rfam database...	0.37	0.25	0.54	25	67482	21	3	18	0	74

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of RNAalifold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for RNAalifold(20)

2. Individual counts for RNAalifold(20) [ download as .csv ]

Performance of Carnac(20) - scored lower in this pairwise comparison

1. Total counts & total scores for Carnac(20)

2. Individual counts for Carnac(20) [ download as .csv ]