CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	RNAalifold(20)		MXScarna(20)
MCC	0.660	>	0.626
Average MCC ± 95% Confidence Intervals	0.661 ± 0.013	>	0.626 ± 0.017
Sensitivity	0.532	<	0.551
Positive Predictive Value	0.819	>	0.712
Total TP	11393	<	11808
Total TN	12420099	>	12417413
Total FP	2840	<	5988
Total FP CONTRA	477	<	910
Total FP INCONS	2037	<	3875
Total FP COMP	326	<	1203
Total FN	10022	>	9607
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of RNAalifold(20) and MXScarna(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RNAalifold(20) and MXScarna(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for RNAalifold(20) and MXScarna(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for RNAalifold(20) and MXScarna(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RNAalifold(20) and MXScarna(20)).

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Performance of RNAalifold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for RNAalifold(20)

Total Base Pair Counts
Total TP	11393
Total TN	12420099
Total FP	2840
Total FP CONTRA	477
Total FP INCONS	2037
Total FP COMP	326
Total FN	10022

Total Scores
MCC	0.660
Average MCC ± 95% Confidence Intervals	0.661 ± 0.013
Sensitivity	0.532
Positive Predictive Value	0.819
Nr of predictions	204

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2. Individual counts for RNAalifold(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.58	0.45	0.75	44	47836	15	1	14	0	53
ASE_00005	RNaseP_bact_a links to Rfam database...	0.64	0.49	0.85	57	57903	10	1	9	0	60
ASE_00006	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.83	52	47523	12	0	11	1	41
ASE_00007	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.90	69	59608	8	1	7	0	41
ASE_00012	RNaseP_bact_a links to Rfam database...	0.55	0.45	0.68	55	73839	30	1	25	4	68
ASE_00018	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	80	80513	8	3	5	0	54
ASE_00020	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.70	44	73857	20	7	12	1	82
ASE_00021	RNaseP_bact_a links to Rfam database...	0.54	0.41	0.73	65	104107	28	4	20	4	95
ASE_00022	RNaseP_bact_b links to Rfam database...	0.74	0.62	0.89	77	82941	16	0	10	6	47
ASE_00028	RNaseP_bact_b links to Rfam database...	0.76	0.62	0.93	78	84582	10	1	5	4	48
ASE_00035	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.83	64	70423	19	2	11	6	54
ASE_00037	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	68	59258	18	0	14	4	42
ASE_00038	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.81	52	53564	12	1	11	0	49
ASE_00040	RNaseP_bact_a links to Rfam database...	0.69	0.55	0.86	73	78918	13	1	11	1	60
ASE_00041	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.82	70	57545	15	0	15	0	38
ASE_00042	RNaseP_bact_a links to Rfam database...	0.52	0.39	0.70	57	90018	25	1	24	0	88
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	66	54540	9	1	8	0	39
ASE_00064	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	54	45387	13	0	10	3	35
ASE_00068	RNaseP_bact_a links to Rfam database...	0.73	0.55	0.96	47	37626	2	2	0	0	38
ASE_00074	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	72	67812	14	0	12	2	47
ASE_00075	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	65	108725	27	3	18	6	97
ASE_00077	RNaseP_bact_a links to Rfam database...	0.79	0.65	0.97	56	45092	5	1	1	3	30
ASE_00078	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.84	58	43002	11	3	8	0	25
ASE_00080	RNaseP_bact_a links to Rfam database...	0.43	0.32	0.59	39	71565	27	3	24	0	84
ASE_00081	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.93	54	49712	4	0	4	0	43
ASE_00082	RNaseP_bact_a links to Rfam database...	0.49	0.34	0.72	39	70446	21	1	14	6	77
ASE_00083	RNaseP_bact_a links to Rfam database...	0.77	0.62	0.96	68	62410	4	2	1	1	42
ASE_00084	RNaseP_bact_a links to Rfam database...	0.61	0.51	0.75	50	53561	17	4	13	0	49
ASE_00087	RNaseP_bact_a links to Rfam database...	0.64	0.44	0.93	64	88341	5	0	5	0	80
ASE_00090	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.93	56	55551	4	0	4	0	45
ASE_00092	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.93	65	63476	6	1	4	1	48
ASE_00099	RNaseP_bact_a links to Rfam database...	0.76	0.64	0.90	77	64534	11	0	9	2	43
ASE_00104	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.81	64	64182	15	2	13	0	55
ASE_00105	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.78	54	64192	18	2	13	3	57
ASE_00107	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.90	74	73071	8	0	8	0	53
ASE_00115	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	61	54546	12	1	7	4	40
ASE_00118	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.78	45	60668	14	4	9	1	57
ASE_00119	RNaseP_bact_a links to Rfam database...	0.57	0.41	0.80	44	62780	11	3	8	0	64
ASE_00123	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	46	38448	9	2	7	0	39
ASE_00125	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.89	48	39286	6	0	6	0	40
ASE_00126	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.94	58	40408	4	0	4	0	24
ASE_00128	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	60	53235	6	0	6	0	40
ASE_00129	RNaseP_bact_a links to Rfam database...	0.65	0.49	0.86	54	62772	9	3	6	0	57
ASE_00131	RNaseP_bact_a links to Rfam database...	0.62	0.48	0.80	41	39289	10	3	7	0	44
ASE_00134	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.80	49	50342	12	3	9	0	46
ASE_00135	RNaseP_bact_a links to Rfam database...	0.49	0.38	0.63	41	63125	24	1	23	0	68
ASE_00136	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.95	62	48140	3	2	1	0	30
ASE_00137	RNaseP_bact_a links to Rfam database...	0.62	0.45	0.85	44	48464	9	2	6	1	54
ASE_00138	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	50	40408	15	0	12	3	31
ASE_00140	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	64	70807	5	1	4	0	61
ASE_00142	RNaseP_bact_a links to Rfam database...	0.70	0.58	0.84	71	67076	16	0	14	2	51
ASE_00146	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	83	70785	11	1	7	3	41
ASE_00153	RNaseP_nuc links to Rfam database...	0.41	0.34	0.50	25	57580	28	1	24	3	48
ASE_00163	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.79	48	53240	13	4	9	0	45
ASE_00165	RNaseP_bact_a links to Rfam database...	0.66	0.48	0.91	48	52922	6	1	4	1	53
ASE_00170	RNaseP_bact_a links to Rfam database...	0.62	0.53	0.74	49	48762	18	4	13	1	44
ASE_00171	RNaseP_bact_a links to Rfam database...	0.60	0.46	0.80	43	48462	11	4	7	0	51
ASE_00172	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.95	71	58921	7	3	1	3	35
ASE_00174	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.75	45	61015	15	2	13	0	64
ASE_00175	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.74	54	59958	19	3	16	0	53
ASE_00179	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.90	57	44190	6	2	4	0	27
ASE_00180	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.82	53	51295	12	4	8	0	47
ASE_00181	RNaseP_bact_a links to Rfam database...	0.58	0.42	0.80	45	57574	12	3	8	1	61
ASE_00182	RNaseP_bact_a links to Rfam database...	0.44	0.29	0.68	39	84198	18	4	14	0	97
ASE_00183	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.79	44	61369	12	4	8	0	69
ASE_00184	RNaseP_bact_a links to Rfam database...	0.65	0.50	0.84	51	54554	10	3	7	0	51
ASE_00185	RNaseP_bact_a links to Rfam database...	0.70	0.51	0.97	65	73469	2	1	1	0	63
ASE_00186	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.79	65	78921	19	2	15	2	67
ASE_00190	RNaseP_bact_b links to Rfam database...	0.64	0.52	0.78	47	45391	17	0	13	4	43
ASE_00197	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.69	53	89176	24	0	24	0	92
ASE_00198	RNaseP_bact_a links to Rfam database...	0.68	0.54	0.86	55	52586	9	1	8	0	47
ASE_00203	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	49	46606	10	2	8	0	47
ASE_00212	RNaseP_bact_a links to Rfam database...	0.64	0.49	0.84	73	93874	17	0	14	3	75
ASE_00214	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	53	56223	5	0	4	1	50
ASE_00215	RNaseP_bact_a links to Rfam database...	0.69	0.49	0.96	49	48465	2	2	0	0	50
ASE_00216	RNaseP_bact_a links to Rfam database...	0.77	0.61	0.96	50	39288	3	0	2	1	32
ASE_00217	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	60	40404	7	2	4	1	30
ASE_00221	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	80	64530	10	1	9	0	37
ASE_00228	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.79	53	46904	15	5	9	1	33
ASE_00229	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	53	42427	8	0	6	2	34
ASE_00231	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.76	44	47837	18	0	14	4	52
ASE_00232	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	55	38444	4	0	4	0	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.50	0.32	0.77	41	75413	12	3	9	0	88
ASE_00238	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.78	52	64194	16	0	15	1	62
ASE_00241	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	52	43893	14	3	8	3	35
ASE_00242	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	69	60996	11	1	9	1	43
ASE_00248	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	71	62399	11	3	8	0	43
ASE_00254	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.92	56	36795	6	0	5	1	26
ASE_00255	RNaseP_bact_a links to Rfam database...	0.49	0.40	0.60	52	74605	35	1	33	1	78
ASE_00257	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.75	50	50973	17	3	14	0	47
ASE_00263	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.85	53	70438	9	1	8	0	67
ASE_00267	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.89	66	45076	9	3	5	1	22
ASE_00270	RNaseP_bact_a links to Rfam database...	0.30	0.18	0.50	23	72344	25	1	22	2	105
ASE_00274	RNaseP_bact_a links to Rfam database...	0.50	0.36	0.69	37	55557	17	5	12	0	66
ASE_00277	RNaseP_bact_a links to Rfam database...	0.48	0.37	0.62	34	48150	21	4	17	0	57
ASE_00279	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	61	53234	6	0	6	0	40
ASE_00280	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.84	54	51939	10	1	9	0	44
ASE_00281	RNaseP_bact_a links to Rfam database...	0.87	0.76	0.99	67	44483	1	0	1	0	21
ASE_00282	RNaseP_bact_a links to Rfam database...	0.59	0.43	0.82	54	77749	12	3	9	0	73
ASE_00283	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	55	61710	11	2	9	0	52
ASE_00284	RNaseP_bact_a links to Rfam database...	0.70	0.53	0.92	57	58249	5	0	5	0	51
ASE_00285	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	58	68937	11	2	9	0	64
ASE_00286	RNaseP_bact_a links to Rfam database...	0.79	0.66	0.94	61	46600	4	0	4	0	31
ASE_00287	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	49	54888	9	1	8	0	54
ASE_00292	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.85	77	81719	14	3	11	0	61
ASE_00294	RNaseP_bact_a links to Rfam database...	0.64	0.47	0.87	81	114388	14	2	10	2	90
ASE_00296	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.81	68	91722	16	3	13	0	77
ASE_00297	RNaseP_bact_a links to Rfam database...	0.69	0.52	0.93	51	52920	7	0	4	3	47
ASE_00298	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	58	67458	12	5	7	0	55
ASE_00318	RNaseP_bact_b links to Rfam database...	0.74	0.60	0.91	71	80122	17	2	5	10	47
ASE_00328	RNaseP_bact_b links to Rfam database...	0.71	0.64	0.77	72	72678	27	5	16	6	40
ASE_00332	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	87	81715	8	0	8	0	51
ASE_00335	RNaseP_bact_b links to Rfam database...	0.70	0.62	0.80	72	75376	24	5	13	6	44
ASE_00340	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.76	47	45994	15	7	8	0	38
ASE_00342	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	70	62400	14	3	8	3	45
ASE_00353	RNaseP_bact_a links to Rfam database...	0.65	0.50	0.84	53	57907	10	1	9	0	54
ASE_00361	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	65	75396	5	1	4	0	62
ASE_00362	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.90	57	48142	6	2	4	0	34
ASE_00363	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.83	59	51289	12	2	10	0	35
ASE_00364	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.77	41	54232	12	1	11	0	64
ASE_00366	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.71	36	58602	16	1	14	1	62
ASE_00367	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	56	43011	4	0	4	0	30
ASE_00369	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	61	55872	12	3	9	0	46
ASE_00370	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.84	43	41854	8	0	8	0	41
ASE_00372	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.87	62	51932	9	0	9	0	38
ASE_00374	RNaseP_bact_a links to Rfam database...	0.74	0.59	0.93	52	44794	4	0	4	0	36
ASE_00376	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.92	61	56887	6	0	5	1	44
ASE_00377	RNaseP_bact_a links to Rfam database...	0.73	0.59	0.90	63	57560	7	0	7	0	44
ASE_00379	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.90	55	45995	6	2	4	0	34
ASE_00382	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	50	41844	11	2	9	0	34
ASE_00383	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	69	54538	11	3	5	3	36
ASE_00384	RNaseP_bact_a links to Rfam database...	0.74	0.59	0.93	54	48458	4	0	4	0	38
ASE_00386	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.90	61	50335	7	2	5	0	35
ASE_00387	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	63	55875	7	0	7	0	41
ASE_00388	RNaseP_bact_a links to Rfam database...	0.73	0.61	0.87	54	45691	10	1	7	2	35
ASE_00390	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	51	42137	7	0	7	0	34
ASE_00393	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.78	54	47826	16	2	13	1	39
ASE_00394	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.83	52	46908	11	3	8	0	41
ASE_00395	RNaseP_bact_a links to Rfam database...	0.87	0.79	0.97	66	41548	2	0	2	0	18
ASE_00396	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	52	41557	7	0	7	0	31
ASE_00397	RNaseP_bact_a links to Rfam database...	0.78	0.64	0.96	67	54545	5	3	0	2	38
ASE_00398	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.82	50	55884	12	3	8	1	54
ASE_00400	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.92	70	57894	11	3	3	5	36
ASE_00401	RNaseP_bact_a links to Rfam database...	0.54	0.37	0.81	46	76971	11	3	8	0	80
ASE_00402	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.93	56	42426	4	0	4	0	29
ASE_00403	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	55	55886	4	0	4	0	52
ASE_00404	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	54	43013	5	1	3	1	31
ASE_00406	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.84	53	48765	10	1	9	0	41
ASE_00411	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.79	46	49397	12	7	5	0	43
ASE_00412	RNaseP_bact_a links to Rfam database...	0.61	0.49	0.76	51	58244	20	0	16	4	54
ASE_00413	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.70	42	44491	21	4	14	3	39
ASE_00415	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	41	54892	14	0	13	1	62
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	76	77329	16	2	14	0	51
ASE_00419	RNaseP_bact_a links to Rfam database...	0.56	0.40	0.79	41	54894	11	2	9	0	62
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	55	46904	13	0	12	1	39
ASE_00423	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.80	67	56869	18	3	14	1	42
ASE_00428	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.80	68	76551	17	1	16	0	57
ASE_00430	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.83	55	46905	12	0	11	1	42
ASE_00437	RNaseP_bact_a links to Rfam database...	0.45	0.36	0.58	48	79318	35	2	33	0	87
ASE_00441	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.80	43	64207	15	0	11	4	69
ASE_00448	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	78	64170	13	1	12	0	34
ASE_00451	RNaseP_bact_a links to Rfam database...	0.70	0.56	0.86	70	70795	11	3	8	0	55
RFA_00599	Telomerase-vert links to Rfam database...	0.75	0.65	0.87	72	101392	18	0	11	7	39
RFA_00601	Telomerase-vert links to Rfam database...	0.75	0.66	0.85	75	99147	17	0	13	4	39
RFA_00602	Telomerase-vert links to Rfam database...	0.65	0.54	0.78	63	101394	21	0	18	3	53
TMR_00017	tmRNA links to Rfam database...	0.68	0.54	0.85	55	67096	14	0	10	4	47
TMR_00018	tmRNA links to Rfam database...	0.62	0.53	0.72	49	64552	23	7	12	4	43
TMR_00038	tmRNA links to Rfam database...	0.65	0.53	0.81	58	71181	14	4	10	0	52
TMR_00042	tmRNA links to Rfam database...	0.68	0.53	0.87	52	62775	9	1	7	1	46
TMR_00046	tmRNA links to Rfam database...	0.56	0.49	0.64	47	62761	28	4	23	1	49
TMR_00048	tmRNA links to Rfam database...	0.64	0.52	0.80	49	64919	13	5	7	1	46
TMR_00080	tmRNA links to Rfam database...	0.57	0.50	0.64	48	70425	33	8	19	6	48
TMR_00082	tmRNA links to Rfam database...	0.59	0.50	0.69	48	67826	28	11	11	6	48
TMR_00123	tmRNA links to Rfam database...	0.70	0.55	0.89	56	66367	12	1	6	5	45
TMR_00137	tmRNA links to Rfam database...	0.56	0.48	0.66	43	61010	24	11	11	2	46
TMR_00142	tmRNA links to Rfam database...	0.63	0.52	0.77	53	70807	22	4	12	6	49
TMR_00207	tmRNA links to Rfam database...	0.66	0.54	0.81	56	72321	19	7	6	6	47
TMR_00257	tmRNA links to Rfam database...	0.75	0.63	0.89	62	67091	15	4	4	7	36
TMR_00271	tmRNA links to Rfam database...	0.48	0.37	0.63	34	64207	26	5	15	6	57
TMR_00332	tmRNA links to Rfam database...	0.64	0.52	0.78	51	67096	19	1	13	5	48
TMR_00366	tmRNA links to Rfam database...	0.55	0.48	0.62	48	67819	29	8	21	0	52
TMR_00378	tmRNA links to Rfam database...	0.49	0.41	0.59	40	67828	29	8	20	1	57
TMR_00399	tmRNA links to Rfam database...	0.63	0.56	0.70	53	64904	27	6	17	4	41
TMR_00404	tmRNA links to Rfam database...	0.56	0.47	0.68	43	67465	20	3	17	0	49
TMR_00427	tmRNA links to Rfam database...	0.50	0.36	0.69	35	67477	16	7	9	0	62
TMR_00443	tmRNA links to Rfam database...	0.73	0.63	0.86	65	67085	15	6	5	4	39
TMR_00451	tmRNA links to Rfam database...	0.57	0.51	0.65	45	63477	30	10	14	6	44
TMR_00458	tmRNA links to Rfam database...	0.54	0.46	0.64	43	63479	28	8	16	4	50
TMR_00469	tmRNA links to Rfam database...	0.70	0.60	0.81	60	64546	14	7	7	0	40
TMR_00472	tmRNA links to Rfam database...	0.65	0.56	0.75	54	64548	19	8	10	1	43
TMR_00519	tmRNA links to Rfam database...	0.57	0.48	0.67	46	63121	25	7	16	2	49
TMR_00520	tmRNA links to Rfam database...	0.53	0.43	0.65	43	63124	27	8	15	4	56
TMR_00522	tmRNA links to Rfam database...	0.52	0.42	0.64	41	63126	27	6	17	4	56
TMR_00528	tmRNA links to Rfam database...	0.54	0.47	0.62	46	63116	34	9	19	6	51
TMR_00540	tmRNA links to Rfam database...	0.66	0.54	0.81	56	73467	17	5	8	4	48
TMR_00568	tmRNA links to Rfam database...	0.73	0.67	0.80	66	60644	22	3	13	6	33
TMR_00571	tmRNA links to Rfam database...	0.75	0.69	0.83	68	60644	20	3	11	6	31
TMR_00580	tmRNA links to Rfam database...	0.74	0.65	0.83	65	60648	19	1	12	6	35
TMR_00584	tmRNA links to Rfam database...	0.75	0.68	0.83	66	60995	17	2	12	3	31
TMR_00586	tmRNA links to Rfam database...	0.69	0.64	0.76	62	60993	26	8	12	6	35
TMR_00616	tmRNA links to Rfam database...	0.64	0.55	0.76	54	67090	17	7	10	0	45
TMR_00699	tmRNA links to Rfam database...	0.68	0.54	0.85	55	67096	15	1	9	5	47
TMR_00702	tmRNA links to Rfam database...	0.54	0.43	0.68	43	67098	24	2	18	4	57
TMR_00703	tmRNA links to Rfam database...	0.67	0.54	0.83	53	67464	15	1	10	4	46

^top

Performance of MXScarna(20) - scored lower in this pairwise comparison

1. Total counts & total scores for MXScarna(20)

Total Base Pair Counts
Total TP	11808
Total TN	12417413
Total FP	5988
Total FP CONTRA	910
Total FP INCONS	3875
Total FP COMP	1203
Total FN	9607

Total Scores
MCC	0.626
Average MCC ± 95% Confidence Intervals	0.626 ± 0.017
Sensitivity	0.551
Positive Predictive Value	0.712
Nr of predictions	204

^top

2. Individual counts for MXScarna(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.80	59	47821	19	2	13	4	38
ASE_00005	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	75	57889	11	1	5	5	42
ASE_00006	RNaseP_bact_a links to Rfam database...	0.52	0.47	0.58	44	47510	34	6	26	2	49
ASE_00007	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.77	73	59590	26	2	20	4	37
ASE_00012	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.84	81	73824	18	2	13	3	42
ASE_00018	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.78	86	80491	29	1	23	5	48
ASE_00020	RNaseP_bact_a links to Rfam database...	0.58	0.46	0.74	58	73842	24	3	17	4	68
ASE_00021	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	101	104081	17	2	12	3	59
ASE_00022	RNaseP_bact_b links to Rfam database...	0.73	0.66	0.80	82	82925	28	5	16	7	42
ASE_00028	RNaseP_bact_b links to Rfam database...	0.78	0.70	0.87	88	84565	21	4	9	8	38
ASE_00035	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.69	67	70403	38	1	29	8	51
ASE_00037	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	77	59250	18	0	13	5	33
ASE_00038	RNaseP_bact_a links to Rfam database...	0.52	0.45	0.62	45	53555	32	3	25	4	56
ASE_00040	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.70	73	78899	38	3	28	7	60
ASE_00041	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.86	68	57551	17	1	10	6	40
ASE_00042	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.86	102	89982	21	3	13	5	43
ASE_00044	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	79	54527	13	4	5	4	26
ASE_00064	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	53	45387	22	1	10	11	36
ASE_00068	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.91	58	37611	11	2	4	5	27
ASE_00074	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	75	67805	21	1	15	5	44
ASE_00075	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.77	76	108712	26	4	19	3	86
ASE_00077	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	60	45073	22	3	14	5	26
ASE_00078	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.86	57	43005	17	2	7	8	26
ASE_00080	RNaseP_bact_a links to Rfam database...	0.40	0.33	0.48	40	71548	48	5	38	5	83
ASE_00081	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.82	65	49691	24	1	13	10	32
ASE_00082	RNaseP_bact_a links to Rfam database...	0.41	0.34	0.51	39	70424	44	4	33	7	77
ASE_00083	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.81	74	62390	24	2	15	7	36
ASE_00084	RNaseP_bact_a links to Rfam database...	0.60	0.49	0.72	49	53560	28	2	17	9	50
ASE_00087	RNaseP_bact_a links to Rfam database...	0.42	0.31	0.59	44	88335	37	2	29	6	100
ASE_00090	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.68	50	55538	27	1	22	4	51
ASE_00092	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.74	59	63466	28	6	15	7	54
ASE_00099	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	82	64517	24	2	19	3	38
ASE_00104	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.81	79	64164	25	1	17	7	40
ASE_00105	RNaseP_bact_a links to Rfam database...	0.55	0.48	0.64	53	64178	35	0	30	5	58
ASE_00107	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.72	76	73047	36	1	29	6	51
ASE_00115	RNaseP_bact_a links to Rfam database...	0.36	0.28	0.46	28	54554	38	2	31	5	73
ASE_00118	RNaseP_bact_a links to Rfam database...	0.51	0.40	0.64	41	60662	33	1	22	10	61
ASE_00119	RNaseP_bact_a links to Rfam database...	0.32	0.23	0.44	25	62778	34	0	32	2	83
ASE_00123	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.68	30	38459	16	3	11	2	55
ASE_00125	RNaseP_bact_a links to Rfam database...	0.61	0.43	0.86	38	39296	11	0	6	5	50
ASE_00126	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	67	40395	15	2	6	7	15
ASE_00128	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.86	56	53236	14	2	7	5	44
ASE_00129	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.74	70	62740	28	3	22	3	41
ASE_00131	RNaseP_bact_a links to Rfam database...	0.60	0.46	0.78	39	39290	20	1	10	9	46
ASE_00134	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.70	49	50333	29	1	20	8	46
ASE_00135	RNaseP_bact_a links to Rfam database...	0.44	0.35	0.56	38	63122	41	1	29	11	71
ASE_00136	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	57	48132	24	1	15	8	35
ASE_00137	RNaseP_bact_a links to Rfam database...	0.65	0.57	0.75	56	48441	23	3	16	4	42
ASE_00138	RNaseP_bact_a links to Rfam database...	0.67	0.60	0.74	49	40404	27	1	16	10	32
ASE_00140	RNaseP_bact_a links to Rfam database...	0.53	0.41	0.68	51	70801	28	4	20	4	74
ASE_00142	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.88	90	67059	16	3	9	4	32
ASE_00146	RNaseP_bact_a links to Rfam database...	0.61	0.51	0.74	63	70791	29	1	21	7	61
ASE_00153	RNaseP_nuc links to Rfam database...	0.52	0.45	0.60	33	57575	51	2	20	29	40
ASE_00163	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	57	53232	17	3	9	5	36
ASE_00165	RNaseP_bact_a links to Rfam database...	0.53	0.45	0.64	45	52905	29	3	22	4	56
ASE_00170	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	47	48749	35	5	27	3	46
ASE_00171	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.51	39	48439	42	1	37	4	55
ASE_00172	RNaseP_bact_a links to Rfam database...	0.71	0.58	0.87	61	58926	15	2	7	6	45
ASE_00174	RNaseP_bact_a links to Rfam database...	0.42	0.34	0.53	37	61005	39	3	30	6	72
ASE_00175	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	64	59949	26	3	15	8	43
ASE_00179	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.83	58	44183	18	4	8	6	26
ASE_00180	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	64	51282	20	3	11	6	36
ASE_00181	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.79	61	57553	24	6	10	8	45
ASE_00182	RNaseP_bact_a links to Rfam database...	0.42	0.32	0.57	43	84179	38	2	31	5	93
ASE_00183	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.79	65	61343	24	0	17	7	48
ASE_00184	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.79	57	54543	17	4	11	2	45
ASE_00185	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.69	47	73468	24	3	18	3	81
ASE_00186	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.84	90	78896	20	1	16	3	42
ASE_00190	RNaseP_bact_b links to Rfam database...	0.52	0.42	0.64	38	45392	24	5	16	3	52
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.79	84	89146	27	2	21	4	61
ASE_00198	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.81	70	52564	20	4	12	4	32
ASE_00203	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	58	46594	17	3	10	4	38
ASE_00212	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.85	100	93844	23	3	14	6	48
ASE_00214	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	73	56195	16	4	8	4	30
ASE_00215	RNaseP_bact_a links to Rfam database...	0.24	0.19	0.30	19	48453	48	6	38	4	80
ASE_00216	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.91	62	39272	13	1	5	7	20
ASE_00217	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	53	40393	31	1	23	7	37
ASE_00221	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	69	64520	34	1	30	3	48
ASE_00228	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.75	55	46898	26	4	14	8	31
ASE_00229	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.88	61	42417	14	3	5	6	26
ASE_00231	RNaseP_bact_a links to Rfam database...	0.57	0.46	0.70	44	47832	24	1	18	5	52
ASE_00232	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.92	61	38437	10	3	2	5	23
ASE_00234	RNaseP_bact_a links to Rfam database...	0.59	0.47	0.73	61	75383	27	3	19	5	68
ASE_00238	RNaseP_bact_a links to Rfam database...	0.61	0.49	0.77	56	64188	22	4	13	5	58
ASE_00241	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.91	60	43890	12	1	5	6	27
ASE_00242	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.76	75	60976	31	1	23	7	37
ASE_00248	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	78	62383	26	1	19	6	36
ASE_00254	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.87	53	36795	12	4	4	4	29
ASE_00255	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	77	74583	34	3	28	3	53
ASE_00257	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.70	50	50969	30	3	18	9	47
ASE_00263	RNaseP_bact_a links to Rfam database...	0.54	0.43	0.68	52	70424	27	4	20	3	68
ASE_00267	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.84	59	45080	20	1	10	9	29
ASE_00270	RNaseP_bact_a links to Rfam database...	0.43	0.30	0.61	38	72328	27	1	23	3	90
ASE_00274	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.85	52	55550	14	2	7	5	51
ASE_00277	RNaseP_bact_a links to Rfam database...	0.73	0.56	0.96	51	48152	6	0	2	4	40
ASE_00279	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	72	53217	19	3	9	7	29
ASE_00280	RNaseP_bact_a links to Rfam database...	0.64	0.57	0.72	56	51925	32	1	21	10	42
ASE_00281	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.89	65	44478	16	3	5	8	23
ASE_00282	RNaseP_bact_a links to Rfam database...	0.51	0.44	0.59	56	77720	43	3	36	4	71
ASE_00283	RNaseP_bact_a links to Rfam database...	0.61	0.51	0.73	55	61701	25	3	17	5	52
ASE_00284	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.81	57	58241	15	2	11	2	51
ASE_00285	RNaseP_bact_a links to Rfam database...	0.58	0.48	0.70	58	68923	28	4	21	3	64
ASE_00286	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.70	52	46591	31	1	21	9	40
ASE_00287	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.79	66	54862	25	3	15	7	37
ASE_00292	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.73	82	81697	39	2	29	8	56
ASE_00294	RNaseP_bact_a links to Rfam database...	0.68	0.59	0.79	101	114353	34	1	26	7	70
ASE_00296	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	79	91700	32	5	22	5	66
ASE_00297	RNaseP_bact_a links to Rfam database...	0.57	0.49	0.66	48	52902	30	3	22	5	50
ASE_00298	RNaseP_bact_a links to Rfam database...	0.46	0.40	0.54	45	67445	43	7	31	5	68
ASE_00318	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.84	81	80103	31	6	10	15	37
ASE_00328	RNaseP_bact_b links to Rfam database...	0.71	0.66	0.77	74	72675	33	5	17	11	38
ASE_00332	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.89	102	81695	17	4	9	4	36
ASE_00335	RNaseP_bact_b links to Rfam database...	0.69	0.63	0.76	73	75370	33	5	18	10	43
ASE_00340	RNaseP_bact_a links to Rfam database...	0.54	0.47	0.62	40	45991	32	4	21	7	45
ASE_00342	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.88	86	62383	19	1	11	7	29
ASE_00353	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	58	57893	25	2	17	6	49
ASE_00361	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.78	52	75399	19	1	14	4	75
ASE_00362	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.82	56	48137	18	3	9	6	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.82	54	51294	22	2	10	10	40
ASE_00364	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.76	61	54205	25	3	16	6	44
ASE_00366	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.65	48	58579	29	4	22	3	50
ASE_00367	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.81	60	42997	20	3	11	6	26
ASE_00369	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.66	54	55863	33	1	27	5	53
ASE_00370	RNaseP_bact_a links to Rfam database...	0.87	0.82	0.92	69	41830	14	0	6	8	15
ASE_00372	RNaseP_bact_a links to Rfam database...	0.48	0.41	0.55	41	51929	36	4	29	3	59
ASE_00374	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	55	44783	15	2	10	3	33
ASE_00376	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	54	56863	38	3	33	2	51
ASE_00377	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.88	74	57546	13	4	6	3	33
ASE_00379	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.76	61	45976	22	3	16	3	28
ASE_00382	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.73	52	41834	29	1	18	10	32
ASE_00383	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	75	54530	17	2	8	7	30
ASE_00384	RNaseP_bact_a links to Rfam database...	0.61	0.53	0.71	49	48447	24	2	18	4	43
ASE_00386	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.80	60	50328	22	1	14	7	36
ASE_00387	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.71	57	55865	27	6	17	4	47
ASE_00388	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	50	45689	20	1	13	6	39
ASE_00390	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.87	58	42128	15	2	7	6	27
ASE_00393	RNaseP_bact_a links to Rfam database...	0.68	0.59	0.77	55	47824	21	1	15	5	38
ASE_00394	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	58	46901	19	4	8	7	35
ASE_00395	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.86	54	41553	20	1	8	11	30
ASE_00396	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.80	52	41551	19	4	9	6	31
ASE_00397	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.91	74	54534	12	0	7	5	31
ASE_00398	RNaseP_bact_a links to Rfam database...	0.51	0.43	0.61	45	55871	38	1	28	9	59
ASE_00400	RNaseP_bact_a links to Rfam database...	0.51	0.42	0.61	45	57896	33	3	26	4	61
ASE_00401	RNaseP_bact_a links to Rfam database...	0.50	0.40	0.62	51	76946	36	4	27	5	75
ASE_00402	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.74	50	42418	21	1	17	3	35
ASE_00403	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	65	55867	19	3	10	6	42
ASE_00404	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.90	60	43004	10	0	7	3	25
ASE_00406	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.76	53	48758	26	1	16	9	41
ASE_00411	RNaseP_bact_a links to Rfam database...	0.54	0.46	0.63	41	49390	27	2	22	3	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.70	52	58237	28	2	20	6	53
ASE_00413	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.69	49	44480	29	5	17	7	32
ASE_00415	RNaseP_bact_a links to Rfam database...	0.42	0.35	0.51	36	54876	37	1	33	3	67
ASE_00416	RNaseP_bact_a links to Rfam database...	0.59	0.51	0.68	65	77325	36	6	25	5	62
ASE_00419	RNaseP_bact_a links to Rfam database...	0.59	0.49	0.71	50	54876	23	1	19	3	53
ASE_00422	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	59	46903	14	2	7	5	35
ASE_00423	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	84	56859	16	3	7	6	25
ASE_00428	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.70	73	76532	38	6	25	7	52
ASE_00430	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.81	57	46901	18	2	11	5	40
ASE_00437	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.69	68	79302	35	0	31	4	67
ASE_00441	RNaseP_bact_a links to Rfam database...	0.44	0.34	0.58	38	64196	33	1	26	6	74
ASE_00448	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.71	65	64169	33	1	26	6	47
ASE_00451	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	87	70778	16	3	8	5	38
RFA_00599	Telomerase-vert links to Rfam database...	0.55	0.52	0.58	58	101375	62	5	37	20	53
RFA_00601	Telomerase-vert links to Rfam database...	0.81	0.80	0.81	91	99123	42	5	16	21	23
RFA_00602	Telomerase-vert links to Rfam database...	0.72	0.72	0.73	83	101361	51	6	25	20	33
TMR_00017	tmRNA links to Rfam database...	0.55	0.52	0.59	53	67071	42	16	21	5	49
TMR_00018	tmRNA links to Rfam database...	0.48	0.48	0.49	44	64530	48	21	25	2	48
TMR_00038	tmRNA links to Rfam database...	0.70	0.62	0.80	68	71168	24	8	9	7	42
TMR_00042	tmRNA links to Rfam database...	0.56	0.55	0.56	54	62739	48	11	31	6	44
TMR_00046	tmRNA links to Rfam database...	0.56	0.55	0.57	53	62742	46	5	35	6	43
TMR_00048	tmRNA links to Rfam database...	0.53	0.52	0.55	49	64891	48	7	33	8	46
TMR_00080	tmRNA links to Rfam database...	0.49	0.50	0.48	48	70399	54	25	28	1	48
TMR_00082	tmRNA links to Rfam database...	0.44	0.44	0.45	42	67803	53	17	34	2	54
TMR_00123	tmRNA links to Rfam database...	0.66	0.53	0.81	54	66363	23	2	11	10	47
TMR_00137	tmRNA links to Rfam database...	0.37	0.36	0.39	32	60992	53	18	33	2	57
TMR_00142	tmRNA links to Rfam database...	0.51	0.50	0.52	51	70778	53	14	33	6	51
TMR_00207	tmRNA links to Rfam database...	0.49	0.49	0.49	50	72288	54	16	36	2	53
TMR_00257	tmRNA links to Rfam database...	0.54	0.49	0.59	48	67080	38	10	23	5	50
TMR_00271	tmRNA links to Rfam database...	0.43	0.37	0.49	34	64192	38	11	24	3	57
TMR_00332	tmRNA links to Rfam database...	0.53	0.51	0.55	50	67070	43	15	26	2	49
TMR_00366	tmRNA links to Rfam database...	0.60	0.56	0.65	56	67810	43	8	22	13	44
TMR_00378	tmRNA links to Rfam database...	0.65	0.60	0.70	58	67813	36	10	15	11	39
TMR_00399	tmRNA links to Rfam database...	0.38	0.35	0.40	33	64898	53	16	33	4	61
TMR_00404	tmRNA links to Rfam database...	0.48	0.47	0.49	43	67441	54	14	30	10	49
TMR_00427	tmRNA links to Rfam database...	0.56	0.52	0.60	50	67445	36	15	18	3	47
TMR_00443	tmRNA links to Rfam database...	0.59	0.55	0.63	57	67070	36	15	19	2	47
TMR_00451	tmRNA links to Rfam database...	0.34	0.34	0.34	30	63459	58	21	36	1	59
TMR_00458	tmRNA links to Rfam database...	0.39	0.38	0.41	35	63460	51	20	31	0	58
TMR_00469	tmRNA links to Rfam database...	0.62	0.60	0.65	60	64527	38	14	19	5	40
TMR_00472	tmRNA links to Rfam database...	0.56	0.47	0.67	46	64551	34	12	11	11	51
TMR_00519	tmRNA links to Rfam database...	0.38	0.40	0.37	38	63086	68	19	47	2	57
TMR_00520	tmRNA links to Rfam database...	0.43	0.41	0.46	41	63100	51	12	37	2	58
TMR_00522	tmRNA links to Rfam database...	0.46	0.44	0.49	43	63102	45	17	28	0	54
TMR_00528	tmRNA links to Rfam database...	0.39	0.40	0.38	39	63088	65	19	44	2	58
TMR_00540	tmRNA links to Rfam database...	0.48	0.48	0.48	50	73431	56	17	38	1	54
TMR_00568	tmRNA links to Rfam database...	0.57	0.53	0.61	52	60641	45	4	29	12	47
TMR_00571	tmRNA links to Rfam database...	0.60	0.56	0.65	55	60641	42	5	25	12	44
TMR_00580	tmRNA links to Rfam database...	0.60	0.52	0.69	52	60651	33	3	20	10	48
TMR_00584	tmRNA links to Rfam database...	0.61	0.57	0.66	55	60992	39	5	23	11	42
TMR_00586	tmRNA links to Rfam database...	0.58	0.55	0.62	53	60989	42	6	27	9	44
TMR_00616	tmRNA links to Rfam database...	0.58	0.47	0.71	47	67095	24	9	10	5	52
TMR_00699	tmRNA links to Rfam database...	0.55	0.50	0.60	51	67076	37	10	24	3	51
TMR_00702	tmRNA links to Rfam database...	0.52	0.50	0.55	50	67070	43	14	27	2	50
TMR_00703	tmRNA links to Rfam database...	0.54	0.49	0.58	49	67444	39	13	22	4	50

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of RNAalifold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for RNAalifold(20)

2. Individual counts for RNAalifold(20) [ download as .csv ]

Performance of MXScarna(20) - scored lower in this pairwise comparison

1. Total counts & total scores for MXScarna(20)

2. Individual counts for MXScarna(20) [ download as .csv ]