CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

Home

Methods

Datasets

Rankings

RNA 2D Atlas

Help

FAQ

Contact us

RSS feeds

Twitter

Overview

Metric	RNAsubopt		RNASLOpt
MCC	0.468	>	0.446
Average MCC ± 95% Confidence Intervals	0.469 ± 0.015	>	0.443 ± 0.014
Sensitivity	0.475	>	0.421
Positive Predictive Value	0.463	<	0.473
Total TP	22074	>	19570
Total TN	28156758	<	28163113
Total FP	28933	>	24136
Total FP CONTRA	4439	>	3416
Total FP INCONS	21186	>	18358
Total FP COMP	3308	>	2362
Total FN	24387	<	26891
P-value	3.56938820447e-08

^top

Performance plots

Comparison of performance of RNAsubopt and RNASLOpt. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RNAsubopt and RNASLOpt).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for RNAsubopt and RNASLOpt).
Comparison of average Matthews Correlation Coefficients (MCCs) for RNAsubopt and RNASLOpt. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RNAsubopt and RNASLOpt).

^top

Performance of RNAsubopt - scored higher in this pairwise comparison

1. Total counts & total scores for RNAsubopt

Total Base Pair Counts
Total TP	22074
Total TN	28156758
Total FP	28933
Total FP CONTRA	4439
Total FP INCONS	21186
Total FP COMP	3308
Total FN	24387

Total Scores
MCC	0.468
Average MCC ± 95% Confidence Intervals	0.469 ± 0.015
Sensitivity	0.475
Positive Predictive Value	0.463
Nr of predictions	480

^top

2. Individual counts for RNAsubopt [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.74	0.73	0.74	55	34117	26	4	15	7	20
ASE_00002	RNaseP_arch links to Rfam database...	0.63	0.62	0.64	45	35441	30	4	21	5	28
ASE_00004	RNaseP_bact_a links to Rfam database...	0.78	0.78	0.78	76	47798	22	2	19	1	21
ASE_00005	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.57	62	57861	51	2	45	4	55
ASE_00006	RNaseP_bact_a links to Rfam database...	0.55	0.56	0.54	52	47489	46	5	40	1	41
ASE_00007	RNaseP_bact_a links to Rfam database...	0.37	0.37	0.37	41	59575	71	1	68	2	69
ASE_00009	RNaseP_arch links to Rfam database...	0.71	0.70	0.72	47	26041	21	3	15	3	20
ASE_00012	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.44	53	73800	71	10	57	4	70
ASE_00014	RNaseP_arch links to Rfam database...	0.42	0.43	0.42	46	54175	67	10	54	3	60
ASE_00017	RNaseP_nuc links to Rfam database...	0.30	0.34	0.26	22	50955	83	20	43	20	42
ASE_00020	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.47	59	73795	66	10	56	0	67
ASE_00025	RNaseP_nuc links to Rfam database...	0.24	0.28	0.20	20	78506	124	21	59	44	51
ASE_00026	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	56	59580	57	1	48	8	54
ASE_00033	RNaseP_bact_a links to Rfam database...	0.50	0.45	0.54	55	64879	47	3	43	1	66
ASE_00035	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.38	42	70389	76	11	58	7	76
ASE_00036	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.48	59	75731	68	8	57	3	73
ASE_00037	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.45	44	59242	57	1	53	3	66
ASE_00038	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.52	51	53529	49	3	45	1	50
ASE_00040	RNaseP_bact_a links to Rfam database...	0.36	0.35	0.37	47	78876	88	4	76	8	86
ASE_00041	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.56	57	57528	50	2	43	5	51
ASE_00044	RNaseP_bact_a links to Rfam database...	0.69	0.70	0.70	73	54510	36	3	29	4	32
ASE_00046	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	52	50304	47	3	44	0	51
ASE_00047	RNaseP_bact_a links to Rfam database...	0.34	0.32	0.36	42	74188	76	5	70	1	88
ASE_00052	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.54	52	61329	49	2	42	5	60
ASE_00053	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	64	79275	68	7	55	6	69
ASE_00056	-	0.36	0.36	0.36	26	30803	51	5	42	4	46
ASE_00064	RNaseP_bact_a links to Rfam database...	0.36	0.38	0.35	34	45353	68	8	56	4	55
ASE_00066	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.49	55	72278	59	2	55	2	75
ASE_00068	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	44	37597	35	0	34	1	41
ASE_00074	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.58	69	67777	50	6	44	0	50
ASE_00076	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	61	68156	48	5	43	0	57
ASE_00077	RNaseP_bact_a links to Rfam database...	0.28	0.28	0.28	24	45065	66	8	53	5	62
ASE_00078	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.69	57	42988	31	5	21	5	26
ASE_00079	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	52	55515	44	5	39	0	48
ASE_00080	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.44	51	71514	69	8	58	3	72
ASE_00081	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	53	49681	41	0	36	5	44
ASE_00082	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.46	51	70389	70	5	55	10	65
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.78	81	62377	30	2	21	7	29
ASE_00084	RNaseP_bact_a links to Rfam database...	0.60	0.60	0.61	59	53532	45	2	35	8	40
ASE_00089	-	0.56	0.53	0.60	42	31305	32	2	26	4	37
ASE_00090	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.51	55	55503	57	4	49	4	46
ASE_00092	RNaseP_bact_a links to Rfam database...	0.73	0.73	0.73	82	63433	36	4	27	5	31
ASE_00096	RNaseP_bact_a links to Rfam database...	0.57	0.56	0.58	64	63436	47	4	42	1	51
ASE_00099	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	75	64508	42	2	35	5	45
ASE_00104	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.58	61	64155	49	3	42	4	58
ASE_00105	RNaseP_bact_a links to Rfam database...	0.31	0.31	0.31	34	64151	81	9	67	5	77
ASE_00107	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.69	80	73037	39	1	35	3	47
ASE_00108	RNaseP_nuc links to Rfam database...	0.55	0.57	0.52	36	46902	66	6	27	33	27
ASE_00111	RNaseP_nuc links to Rfam database...	0.27	0.33	0.21	19	49997	81	31	39	11	38
ASE_00112	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.61	70	75352	50	11	33	6	46
ASE_00115	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	63	54514	45	4	34	7	38
ASE_00116	RNaseP_arch links to Rfam database...	0.25	0.26	0.25	17	31557	55	10	42	3	49
ASE_00118	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.55	56	60625	52	3	42	7	46
ASE_00119	RNaseP_bact_a links to Rfam database...	0.71	0.72	0.70	78	62723	36	4	30	2	30
ASE_00120	RNaseP_arch links to Rfam database...	0.48	0.49	0.47	46	46874	51	7	44	0	48
ASE_00121	RNaseP_arch links to Rfam database...	0.31	0.33	0.31	30	45052	70	9	59	2	62
ASE_00122	RNaseP_bact_a links to Rfam database...	0.19	0.19	0.19	17	43274	75	2	72	1	71
ASE_00123	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	46	38425	37	2	30	5	39
ASE_00125	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.64	55	39254	36	5	26	5	33
ASE_00126	RNaseP_bact_a links to Rfam database...	0.78	0.80	0.76	66	40383	28	4	17	7	16
ASE_00128	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.70	69	53203	37	3	26	8	31
ASE_00129	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.75	82	62726	30	3	24	3	29
ASE_00131	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.61	43	39270	37	1	26	10	42
ASE_00132	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.47	45	50308	52	6	44	2	50
ASE_00134	RNaseP_bact_a links to Rfam database...	0.34	0.34	0.35	32	50311	65	4	56	5	63
ASE_00135	RNaseP_bact_a links to Rfam database...	0.45	0.45	0.45	49	63081	66	9	51	6	60
ASE_00136	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	47	48118	49	1	39	9	45
ASE_00137	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	54	48423	45	3	36	6	44
ASE_00138	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	44	40394	32	0	32	0	37
ASE_00139	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	70	54194	27	1	20	6	34
ASE_00140	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	66	70765	45	6	39	0	59
ASE_00142	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.50	59	67044	60	7	51	2	63
ASE_00145	RNaseP_arch links to Rfam database...	0.46	0.46	0.46	51	70015	66	7	52	7	60
ASE_00146	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.60	66	70766	50	1	43	6	58
ASE_00151	RNaseP_bact_a links to Rfam database...	0.27	0.27	0.28	26	51911	66	11	55	0	72
ASE_00153	RNaseP_nuc links to Rfam database...	0.67	0.68	0.66	50	57554	66	2	24	40	23
ASE_00154	RNaseP_arch links to Rfam database...	0.63	0.64	0.64	68	65234	42	4	35	3	39
ASE_00163	RNaseP_bact_a links to Rfam database...	0.39	0.39	0.39	36	53209	65	6	50	9	57
ASE_00165	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.68	65	52879	32	5	26	1	36
ASE_00168	RNaseP_nuc links to Rfam database...	0.16	0.20	0.13	13	60628	105	25	60	20	51
ASE_00169	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	71	57189	35	5	26	4	36
ASE_00170	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.69	61	48739	35	2	26	7	32
ASE_00171	RNaseP_bact_a links to Rfam database...	0.66	0.67	0.66	63	48420	33	5	28	0	31
ASE_00172	RNaseP_bact_a links to Rfam database...	0.62	0.63	0.60	67	58885	44	5	39	0	39
ASE_00174	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.52	56	60967	54	6	46	2	53
ASE_00175	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.67	68	59929	40	3	31	6	39
ASE_00176	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	58	59931	45	4	38	3	52
ASE_00179	RNaseP_bact_a links to Rfam database...	0.66	0.68	0.64	57	44164	32	7	25	0	27
ASE_00180	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.65	64	51262	39	3	31	5	36
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.55	0.54	58	57523	53	4	45	4	48
ASE_00183	RNaseP_bact_a links to Rfam database...	0.73	0.73	0.73	82	61313	35	3	27	5	31
ASE_00184	RNaseP_bact_a links to Rfam database...	0.62	0.64	0.61	65	54509	41	10	31	0	37
ASE_00185	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.71	85	73416	38	7	28	3	43
ASE_00186	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.78	97	78878	34	3	25	6	35
ASE_00187	RNaseP_arch links to Rfam database...	0.44	0.44	0.44	51	68520	69	8	56	5	64
ASE_00189	RNaseP_bact_b links to Rfam database...	0.58	0.57	0.60	58	63093	46	9	30	7	44
ASE_00190	RNaseP_bact_b links to Rfam database...	0.57	0.56	0.58	50	45365	42	7	29	6	40
ASE_00194	RNaseP_bact_b links to Rfam database...	0.56	0.55	0.56	66	73418	56	13	39	4	53
ASE_00196	RNaseP_arch links to Rfam database...	0.74	0.73	0.75	55	31553	22	2	16	4	20
ASE_00198	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	66	52549	41	6	29	6	36
ASE_00203	RNaseP_bact_a links to Rfam database...	0.76	0.75	0.77	72	46571	25	4	18	3	24
ASE_00204	RNaseP_bact_b links to Rfam database...	0.63	0.61	0.65	68	67792	41	7	29	5	44
ASE_00205	RNaseP_arch links to Rfam database...	0.46	0.47	0.46	42	45964	54	8	42	4	48
ASE_00209	RNaseP_arch links to Rfam database...	0.40	0.39	0.41	34	42989	48	5	43	0	54
ASE_00210	RNaseP_arch links to Rfam database...	0.47	0.48	0.47	31	27195	36	7	28	1	34
ASE_00213	RNaseP_arch links to Rfam database...	0.73	0.73	0.73	48	27195	19	6	12	1	18
ASE_00214	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.74	73	56182	32	4	21	7	30
ASE_00215	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	38	48425	53	2	51	0	61
ASE_00216	RNaseP_bact_a links to Rfam database...	0.61	0.62	0.59	51	39254	36	7	28	1	31
ASE_00217	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	35	40394	48	3	38	7	55
ASE_00221	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.55	61	64510	53	1	48	4	56
ASE_00227	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	58	78874	72	11	60	1	75
ASE_00228	RNaseP_bact_a links to Rfam database...	0.60	0.63	0.58	54	46878	39	14	25	0	32
ASE_00229	RNaseP_bact_a links to Rfam database...	0.73	0.72	0.73	63	42400	28	5	18	5	24
ASE_00231	RNaseP_bact_a links to Rfam database...	0.65	0.67	0.64	64	47795	36	5	31	0	32
ASE_00232	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	52	38419	33	4	28	1	32
ASE_00234	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	44	75350	76	7	65	4	85
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45663	101	25	65	11	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.42	0.42	0.42	48	64146	70	6	61	3	66
ASE_00240	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.67	60	46575	37	3	27	7	33
ASE_00241	RNaseP_bact_a links to Rfam database...	0.51	0.53	0.49	46	43862	48	10	38	0	41
ASE_00242	RNaseP_bact_a links to Rfam database...	0.46	0.46	0.47	51	60966	60	5	53	2	61
ASE_00246	RNaseP_nuc links to Rfam database...	0.29	0.34	0.25	23	48114	75	26	42	7	44
ASE_00247	RNaseP_nuc links to Rfam database...	0.17	0.19	0.15	12	54205	97	19	49	29	52
ASE_00248	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.62	67	62373	45	1	40	4	47
ASE_00250	RNaseP_bact_a links to Rfam database...	0.82	0.82	0.83	107	78874	25	4	18	3	24
ASE_00254	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.42	33	36777	50	4	42	4	49
ASE_00255	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.71	85	74571	41	3	32	6	45
ASE_00257	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	54	50945	50	4	37	9	43
ASE_00259	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.44	48	73043	65	9	53	3	73
ASE_00263	RNaseP_bact_a links to Rfam database...	0.76	0.77	0.76	92	70379	31	7	22	2	28
ASE_00264	RNaseP_nuc links to Rfam database...	0.81	0.75	0.87	75	49055	21	0	11	10	25
ASE_00267	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	50	45071	37	4	25	8	38
ASE_00270	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.76	91	72271	35	1	27	7	37
ASE_00274	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.50	51	55510	50	10	40	0	52
ASE_00277	RNaseP_bact_a links to Rfam database...	0.46	0.47	0.44	43	48108	55	10	44	1	48
ASE_00279	RNaseP_bact_a links to Rfam database...	0.73	0.72	0.74	73	53202	33	3	23	7	28
ASE_00280	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	65	51907	39	4	27	8	33
ASE_00281	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	39	44462	51	5	45	1	49
ASE_00282	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	56	77690	70	4	65	1	71
ASE_00283	RNaseP_bact_a links to Rfam database...	0.81	0.79	0.84	84	61676	25	2	14	9	23
ASE_00284	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.51	54	58206	58	6	45	7	54
ASE_00285	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.73	80	68896	38	2	28	8	42
ASE_00286	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	45	46575	50	2	43	5	47
ASE_00287	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.76	71	54852	32	2	21	9	32
ASE_00288	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	40	45968	49	5	43	1	53
ASE_00291	-	0.37	0.36	0.39	34	48429	54	9	44	1	60
ASE_00295	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	59	73800	64	5	56	3	72
ASE_00297	RNaseP_bact_a links to Rfam database...	0.66	0.66	0.65	65	52875	38	7	28	3	33
ASE_00298	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.48	51	67422	60	9	46	5	62
ASE_00299	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.58	59	49354	47	8	34	5	41
ASE_00313	RNaseP_nuc links to Rfam database...	0.72	0.72	0.72	64	62392	45	6	19	20	25
ASE_00327	RNaseP_nuc links to Rfam database...	0.81	0.80	0.83	71	57205	35	1	14	20	18
ASE_00328	RNaseP_bact_b links to Rfam database...	0.41	0.41	0.41	46	72659	75	5	61	9	66
ASE_00330	RNaseP_nuc links to Rfam database...	0.70	0.71	0.70	64	56188	50	4	24	22	26
ASE_00335	RNaseP_bact_b links to Rfam database...	0.42	0.42	0.42	49	75348	79	12	57	10	67
ASE_00337	RNaseP_nuc links to Rfam database...	0.46	0.49	0.43	35	39259	57	11	35	11	36
ASE_00338	RNaseP_nuc links to Rfam database...	0.48	0.47	0.50	46	66338	63	4	42	17	52
ASE_00340	RNaseP_bact_a links to Rfam database...	0.76	0.75	0.76	64	45972	29	6	14	9	21
ASE_00342	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	59	62377	48	2	43	3	56
ASE_00346	RNaseP_arch links to Rfam database...	0.42	0.41	0.42	40	48110	59	4	51	4	57
ASE_00353	RNaseP_bact_a links to Rfam database...	0.50	0.51	0.49	55	57857	59	11	47	1	52
ASE_00359	RNaseP_arch links to Rfam database...	0.45	0.46	0.44	37	42693	55	3	45	7	43
ASE_00360	RNaseP_arch links to Rfam database...	0.31	0.32	0.31	21	29335	53	11	36	6	44
ASE_00361	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.34	41	75346	82	10	69	3	86
ASE_00362	RNaseP_bact_a links to Rfam database...	0.57	0.57	0.57	52	48114	46	4	35	7	39
ASE_00363	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.42	39	51267	60	2	52	6	55
ASE_00364	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.55	57	54181	51	6	41	4	48
ASE_00366	RNaseP_bact_a links to Rfam database...	0.51	0.54	0.47	53	58541	60	10	49	1	45
ASE_00367	RNaseP_bact_a links to Rfam database...	0.31	0.31	0.30	27	42981	68	7	56	5	59
ASE_00369	RNaseP_bact_a links to Rfam database...	0.57	0.58	0.56	62	55835	48	3	45	0	45
ASE_00370	RNaseP_bact_a links to Rfam database...	0.62	0.63	0.61	53	41818	34	1	33	0	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.70	69	51904	34	5	25	4	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.65	0.66	0.64	58	44759	33	7	26	0	30
ASE_00375	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.48	51	60271	59	4	52	3	59
ASE_00376	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.52	54	56850	52	4	45	3	51
ASE_00377	RNaseP_bact_a links to Rfam database...	0.81	0.80	0.81	86	57524	26	3	17	6	21
ASE_00379	RNaseP_bact_a links to Rfam database...	0.61	0.61	0.61	54	45968	42	4	30	8	35
ASE_00380	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.49	46	54852	54	2	46	6	53
ASE_00382	RNaseP_bact_a links to Rfam database...	0.40	0.40	0.40	34	41821	53	6	44	3	50
ASE_00383	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	60	54517	43	3	35	5	45
ASE_00384	RNaseP_bact_a links to Rfam database...	0.68	0.70	0.67	64	48420	37	5	27	5	28
ASE_00385	RNaseP_bact_a links to Rfam database...	0.42	0.43	0.40	35	41818	53	6	46	1	46
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.52	54	50300	54	4	45	5	42
ASE_00387	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.63	64	55844	43	1	36	6	40
ASE_00388	RNaseP_bact_a links to Rfam database...	0.61	0.63	0.60	56	45659	40	2	36	2	33
ASE_00390	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.49	39	42116	50	6	34	10	46
ASE_00393	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.54	49	47804	48	1	41	6	44
ASE_00394	RNaseP_bact_a links to Rfam database...	0.70	0.71	0.69	66	46875	32	3	27	2	27
ASE_00395	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.56	46	41534	43	2	34	7	38
ASE_00396	RNaseP_bact_a links to Rfam database...	0.35	0.36	0.34	30	41529	62	11	46	5	53
ASE_00397	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.50	53	54510	52	7	45	0	52
ASE_00398	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.64	65	55844	40	2	34	4	39
ASE_00400	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.56	59	57865	47	10	36	1	47
ASE_00401	RNaseP_bact_a links to Rfam database...	0.53	0.56	0.51	70	76892	66	13	53	0	56
ASE_00402	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	36	42403	52	5	42	5	49
ASE_00403	RNaseP_bact_a links to Rfam database...	0.39	0.39	0.40	42	55839	64	3	61	0	65
ASE_00404	RNaseP_bact_a links to Rfam database...	0.35	0.35	0.36	30	42987	62	1	53	8	55
ASE_00406	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.73	66	48737	27	8	17	2	28
ASE_00408	-	0.48	0.48	0.49	34	32315	41	2	34	5	37
ASE_00409	-	0.47	0.48	0.46	40	40954	47	7	40	0	43
ASE_00411	RNaseP_bact_a links to Rfam database...	0.30	0.30	0.31	27	49367	66	6	55	5	62
ASE_00412	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	47	58210	57	9	45	3	58
ASE_00413	RNaseP_bact_a links to Rfam database...	0.56	0.59	0.54	48	44462	44	11	30	3	33
ASE_00414	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.31	27	46273	67	4	56	7	68
ASE_00415	RNaseP_bact_a links to Rfam database...	0.48	0.50	0.47	51	54837	64	4	54	6	52
ASE_00416	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.58	68	77303	56	9	41	6	59
ASE_00417	RNaseP_arch links to Rfam database...	0.44	0.45	0.43	45	54510	64	9	51	4	55
ASE_00418	RNaseP_arch links to Rfam database...	0.33	0.33	0.32	25	38704	54	5	47	2	50
ASE_00419	RNaseP_bact_a links to Rfam database...	0.73	0.73	0.74	75	54844	31	5	22	4	28
ASE_00422	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.48	46	46876	55	5	44	6	48
ASE_00423	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.60	63	56848	45	7	35	3	46
ASE_00426	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	48	60967	61	6	54	1	60
ASE_00428	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	82	76519	42	3	32	7	43
ASE_00429	-	0.39	0.38	0.40	25	28141	45	3	34	8	41
ASE_00430	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	60	46874	42	7	30	5	37
ASE_00431	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	52	46269	44	9	30	5	43
ASE_00434	RNaseP_bact_b links to Rfam database...	0.56	0.56	0.56	62	68154	57	10	39	8	48
ASE_00437	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	57	79278	66	4	62	0	78
ASE_00438	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	44	65960	62	6	56	0	72
ASE_00441	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	83	64158	33	4	16	13	29
ASE_00447	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.64	68	60272	43	2	36	5	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.52	56	64154	61	7	44	10	56
ASE_00451	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.64	74	70761	44	1	40	3	51
CRW_00016	Intron_gpI links to Rfam database...	0.60	0.58	0.63	70	77309	55	5	37	13	50
CRW_00608	-	0.67	0.67	0.68	53	35700	32	6	19	7	26
CRW_00610	Intron_gpI links to Rfam database...	0.49	0.51	0.48	41	36230	44	9	35	0	40
CRW_00611	-	0.84	0.81	0.86	61	31304	13	4	6	3	14
CRW_00613	Intron_gpI links to Rfam database...	0.66	0.62	0.71	48	34912	28	1	19	8	30
CRW_00618	Intron_gpI links to Rfam database...	0.07	0.08	0.07	5	56205	92	15	55	22	56
CRW_00633	Intron_gpI links to Rfam database...	0.40	0.42	0.39	44	63434	70	10	58	2	62
CRW_00634	Intron_gpI links to Rfam database...	0.50	0.53	0.48	50	64516	59	11	43	5	44
CRW_00641	-	0.71	0.72	0.70	55	39824	35	6	18	11	21
CRW_00642	-	0.61	0.65	0.58	42	47205	54	8	23	23	23
CRW_00645	-	0.77	0.82	0.72	55	35435	31	8	13	10	12
CRW_00646	-	0.84	0.84	0.83	54	34915	29	0	11	18	10
CRW_00654	-	0.70	0.69	0.72	85	78092	38	4	29	5	39
CRW_00658	-	0.46	0.48	0.45	49	74581	61	24	37	0	53
CRW_00659	-	0.38	0.44	0.33	27	32304	61	15	39	7	34
CRW_00660	-	0.52	0.53	0.52	32	22093	33	7	23	3	28
CRW_00661	-	0.19	0.22	0.17	11	24245	57	11	43	3	40
CRW_00662	-	0.16	0.17	0.16	11	28610	64	5	54	5	54
CRW_00663	-	0.07	0.08	0.07	5	26035	74	9	57	8	56
CRW_00664	-	0.21	0.24	0.19	19	53529	80	18	62	0	59
CRW_00665	-	0.00	0.00	0.00	0	23597	60	10	46	4	48
CRW_00670	Intron_gpI links to Rfam database...	0.62	0.61	0.63	73	70009	45	9	34	2	47
CRW_00671	Intron_gpI links to Rfam database...	0.65	0.63	0.67	74	62725	43	1	35	7	43
CRW_00672	Intron_gpI links to Rfam database...	0.74	0.75	0.74	83	72278	38	6	23	9	28
CRW_00677	-	0.58	0.61	0.56	64	71895	59	13	38	8	41
CRW_00679	-	0.24	0.25	0.23	27	76517	99	17	75	7	80
CRW_00687	-	0.69	0.74	0.64	49	28603	32	8	20	4	17
CRW_00688	-	0.75	0.77	0.73	44	21885	17	7	9	1	13
CRW_00689	-	0.67	0.71	0.63	55	33583	34	11	21	2	22
CRW_00690	-	0.72	0.72	0.72	50	33342	27	5	14	8	19
CRW_00691	-	0.53	0.57	0.50	38	27185	40	5	33	2	29
CRW_00692	Intron_gpI links to Rfam database...	0.34	0.37	0.32	33	68532	80	22	48	10	57
CRW_00703	-	0.51	0.56	0.47	37	40392	48	15	26	7	29
CRW_00715	-	0.75	0.73	0.78	76	69280	25	4	18	3	28
CRW_00721	-	0.52	0.60	0.45	41	58562	65	22	28	15	27
PDB_00078	-	0.64	0.61	0.67	70	49666	34	7	27	0	45
PDB_00278	-	0.41	0.40	0.41	29	24906	41	5	36	0	43
PDB_00423	-	0.19	0.19	0.19	14	26723	59	7	52	0	60
PDB_00701	-	0.47	0.47	0.48	51	45344	57	5	51	1	58
PDB_00747	-	0.65	0.60	0.72	48	24464	19	0	19	0	32
PDB_00827	Intron_gpI links to Rfam database...	0.59	0.53	0.65	43	26962	24	3	20	1	38
PDB_00917	-	0.56	0.54	0.58	51	35157	43	3	34	6	44
PDB_00919	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.55	50	44162	45	2	39	4	53
PDB_01129	-	0.27	0.28	0.26	20	35434	62	16	41	5	51
PDB_01157	-	0.23	0.22	0.23	22	49992	72	12	60	0	76
TMR_00007	tmRNA links to Rfam database...	0.38	0.37	0.39	40	61674	67	9	53	5	68
TMR_00008	tmRNA links to Rfam database...	0.34	0.35	0.34	37	65958	80	11	60	9	69
TMR_00010	tmRNA links to Rfam database...	0.29	0.30	0.28	29	57866	75	14	61	0	67
TMR_00012	tmRNA links to Rfam database...	0.34	0.37	0.31	30	64523	84	25	42	17	51
TMR_00014	tmRNA links to Rfam database...	0.57	0.56	0.57	62	68526	57	17	30	10	48
TMR_00017	tmRNA links to Rfam database...	0.36	0.38	0.35	39	67049	79	17	56	6	63
TMR_00018	tmRNA links to Rfam database...	0.12	0.13	0.12	12	64521	93	11	76	6	80
TMR_00028	tmRNA links to Rfam database...	0.30	0.33	0.28	32	62722	84	14	67	3	65
TMR_00030	tmRNA links to Rfam database...	0.17	0.19	0.16	21	75726	111	17	91	3	90
TMR_00034	tmRNA links to Rfam database...	0.64	0.64	0.64	70	59921	47	10	30	7	40
TMR_00035	tmRNA links to Rfam database...	0.30	0.33	0.28	32	67782	89	12	70	7	66
TMR_00038	tmRNA links to Rfam database...	0.23	0.24	0.22	26	71136	95	11	80	4	84
TMR_00042	tmRNA links to Rfam database...	0.24	0.24	0.24	24	62735	79	9	67	3	74
TMR_00046	tmRNA links to Rfam database...	0.54	0.55	0.52	53	62734	54	12	36	6	43
TMR_00047	tmRNA links to Rfam database...	0.25	0.30	0.22	17	48437	79	18	44	17	40
TMR_00048	tmRNA links to Rfam database...	0.22	0.24	0.20	23	64866	96	16	75	5	72
TMR_00049	tmRNA links to Rfam database...	0.51	0.53	0.49	46	63097	59	9	38	12	41
TMR_00051	tmRNA links to Rfam database...	0.66	0.65	0.68	61	65613	45	7	22	16	33
TMR_00055	tmRNA links to Rfam database...	0.38	0.38	0.39	43	78894	78	8	58	12	71
TMR_00057	tmRNA links to Rfam database...	0.14	0.16	0.12	13	73807	110	27	73	10	66
TMR_00061	tmRNA links to Rfam database...	0.22	0.23	0.21	23	59574	95	11	77	7	76
TMR_00062	tmRNA links to Rfam database...	0.29	0.32	0.28	33	78486	96	19	68	9	71
TMR_00064	tmRNA links to Rfam database...	0.39	0.41	0.37	42	76913	82	21	52	9	61
TMR_00065	tmRNA links to Rfam database...	0.54	0.58	0.52	61	76518	59	16	41	2	45
TMR_00073	tmRNA links to Rfam database...	0.43	0.43	0.43	50	65588	65	5	60	0	67
TMR_00076	tmRNA links to Rfam database...	0.32	0.34	0.31	34	70766	82	15	61	6	66
TMR_00080	tmRNA links to Rfam database...	0.33	0.33	0.32	32	70401	67	19	48	0	64
TMR_00081	tmRNA links to Rfam database...	0.47	0.45	0.48	48	67061	53	12	40	1	58
TMR_00082	tmRNA links to Rfam database...	0.41	0.42	0.40	40	67795	65	19	42	4	56
TMR_00083	tmRNA links to Rfam database...	0.34	0.34	0.34	36	68160	78	14	55	9	69
TMR_00092	tmRNA links to Rfam database...	0.40	0.42	0.38	42	67417	72	17	52	3	59
TMR_00093	tmRNA links to Rfam database...	0.29	0.31	0.27	32	64141	88	16	72	0	70
TMR_00096	tmRNA links to Rfam database...	0.44	0.46	0.43	46	64872	67	18	44	5	54
TMR_00101	tmRNA links to Rfam database...	0.42	0.43	0.42	46	64152	67	7	56	4	61
TMR_00102	tmRNA links to Rfam database...	0.30	0.33	0.28	33	64142	88	20	66	2	68
TMR_00103	tmRNA links to Rfam database...	0.49	0.50	0.49	54	64150	58	12	45	1	54
TMR_00104	-	0.08	0.10	0.07	7	66700	94	34	54	6	63
TMR_00116	tmRNA links to Rfam database...	0.71	0.68	0.73	71	64883	41	3	23	15	33
TMR_00119	tmRNA links to Rfam database...	0.54	0.55	0.54	57	71904	57	9	40	8	47
TMR_00123	tmRNA links to Rfam database...	0.46	0.47	0.46	47	66327	57	11	45	1	54
TMR_00124	tmRNA links to Rfam database...	0.35	0.38	0.33	37	70388	89	13	62	14	61
TMR_00125	tmRNA links to Rfam database...	0.26	0.27	0.25	27	64152	86	17	65	4	72
TMR_00127	tmRNA links to Rfam database...	0.23	0.25	0.22	24	62728	86	24	59	3	73
TMR_00128	tmRNA links to Rfam database...	0.46	0.49	0.44	47	60968	62	21	39	2	49
TMR_00131	tmRNA links to Rfam database...	0.27	0.27	0.28	27	64882	78	13	58	7	72
TMR_00135	tmRNA links to Rfam database...	0.51	0.49	0.53	49	62742	53	10	34	9	50
TMR_00136	tmRNA links to Rfam database...	0.19	0.21	0.18	21	74572	102	25	73	4	80
TMR_00137	tmRNA links to Rfam database...	0.16	0.18	0.15	16	60971	92	19	69	4	73
TMR_00139	tmRNA links to Rfam database...	0.56	0.60	0.51	55	62021	61	19	33	9	36
TMR_00140	tmRNA links to Rfam database...	0.49	0.50	0.49	50	73817	69	8	45	16	50
TMR_00142	tmRNA links to Rfam database...	0.50	0.52	0.49	53	70767	66	16	40	10	49
TMR_00143	tmRNA links to Rfam database...	0.44	0.46	0.44	47	64512	70	10	51	9	56
TMR_00144	tmRNA links to Rfam database...	0.25	0.26	0.23	27	74189	92	16	73	3	76
TMR_00146	tmRNA links to Rfam database...	0.87	0.88	0.86	37	32088	34	2	4	28	5
TMR_00150	tmRNA links to Rfam database...	0.71	0.71	0.71	30	43029	53	2	10	41	12
TMR_00155	tmRNA links to Rfam database...	0.34	0.33	0.35	34	61680	70	4	58	8	70
TMR_00156	tmRNA links to Rfam database...	0.27	0.28	0.25	27	60272	84	14	65	5	70
TMR_00158	tmRNA links to Rfam database...	0.44	0.43	0.44	43	60628	60	9	46	5	56
TMR_00159	tmRNA links to Rfam database...	0.34	0.36	0.32	33	62025	81	18	52	11	59
TMR_00160	tmRNA links to Rfam database...	0.35	0.37	0.34	35	64517	76	14	54	8	60
TMR_00164	tmRNA links to Rfam database...	0.39	0.39	0.39	41	66690	72	10	54	8	65
TMR_00165	tmRNA links to Rfam database...	0.29	0.31	0.28	30	61667	90	12	67	11	67
TMR_00166	tmRNA links to Rfam database...	0.20	0.20	0.20	20	61676	86	11	69	6	81
TMR_00168	tmRNA links to Rfam database...	0.68	0.66	0.71	75	60970	35	3	27	5	39
TMR_00173	tmRNA links to Rfam database...	0.31	0.36	0.27	15	42139	68	18	23	27	27
TMR_00179	tmRNA links to Rfam database...	0.53	0.55	0.50	54	67054	64	11	42	11	44
TMR_00180	tmRNA links to Rfam database...	0.64	0.65	0.63	64	67060	50	9	28	13	35
TMR_00182	tmRNA links to Rfam database...	0.14	0.15	0.14	15	66323	96	12	80	4	87
TMR_00183	tmRNA links to Rfam database...	0.13	0.14	0.12	14	63077	105	8	91	6	89
TMR_00184	tmRNA links to Rfam database...	0.51	0.51	0.51	52	63088	58	5	45	8	50
TMR_00193	tmRNA links to Rfam database...	0.41	0.44	0.39	35	59250	61	16	39	6	45
TMR_00194	tmRNA links to Rfam database...	0.45	0.46	0.45	43	62739	56	17	36	3	50
TMR_00196	tmRNA links to Rfam database...	0.54	0.54	0.55	52	60980	53	6	37	10	45
TMR_00199	tmRNA links to Rfam database...	0.57	0.61	0.54	56	62732	54	13	34	7	36
TMR_00200	-	0.57	0.57	0.57	43	41540	44	3	30	11	32
TMR_00204	tmRNA links to Rfam database...	0.33	0.34	0.33	33	60277	78	14	54	10	64
TMR_00207	tmRNA links to Rfam database...	0.40	0.41	0.40	42	72286	69	9	53	7	61
TMR_00223	tmRNA links to Rfam database...	0.25	0.26	0.23	25	64154	86	24	58	4	70
TMR_00224	tmRNA links to Rfam database...	0.40	0.43	0.38	43	64868	70	9	60	1	58
TMR_00226	tmRNA links to Rfam database...	0.34	0.36	0.32	38	69631	83	16	66	1	67
TMR_00227	tmRNA links to Rfam database...	0.50	0.52	0.47	53	70013	62	9	50	3	48
TMR_00234	tmRNA links to Rfam database...	0.25	0.26	0.23	27	58880	93	15	74	4	75
TMR_00239	tmRNA links to Rfam database...	0.45	0.47	0.43	45	61671	61	11	49	1	51
TMR_00240	tmRNA links to Rfam database...	0.21	0.24	0.19	20	63082	91	23	65	3	65
TMR_00246	-	0.57	0.59	0.56	20	78174	114	3	13	98	14
TMR_00248	tmRNA links to Rfam database...	0.28	0.32	0.25	12	54237	88	13	23	52	26
TMR_00257	tmRNA links to Rfam database...	0.12	0.12	0.13	12	67066	89	7	76	6	86
TMR_00259	tmRNA links to Rfam database...	0.57	0.58	0.56	60	67789	50	16	31	3	43
TMR_00261	tmRNA links to Rfam database...	0.55	0.58	0.52	59	66682	58	20	34	4	42
TMR_00262	tmRNA links to Rfam database...	0.54	0.57	0.51	59	74189	57	20	37	0	45
TMR_00271	tmRNA links to Rfam database...	0.38	0.40	0.37	36	64163	71	13	49	9	55
TMR_00274	tmRNA links to Rfam database...	0.29	0.30	0.28	32	66682	87	13	68	6	73
TMR_00278	tmRNA links to Rfam database...	0.43	0.45	0.42	46	67786	74	7	57	10	56
TMR_00279	tmRNA links to Rfam database...	0.48	0.49	0.46	46	68907	63	12	41	10	48
TMR_00280	tmRNA links to Rfam database...	0.50	0.53	0.48	54	65953	72	9	50	13	47
TMR_00283	tmRNA links to Rfam database...	0.47	0.47	0.47	45	65245	59	6	45	8	51
TMR_00289	tmRNA links to Rfam database...	0.56	0.58	0.55	57	67057	59	9	38	12	41
TMR_00290	tmRNA links to Rfam database...	0.19	0.21	0.18	19	64158	92	15	69	8	73
TMR_00296	tmRNA links to Rfam database...	0.32	0.34	0.31	33	68900	82	11	62	9	65
TMR_00298	tmRNA links to Rfam database...	0.47	0.50	0.44	51	68149	69	16	49	4	50
TMR_00300	tmRNA links to Rfam database...	0.53	0.54	0.52	61	70382	67	12	45	10	51
TMR_00302	tmRNA links to Rfam database...	0.24	0.28	0.21	26	77295	104	32	68	4	68
TMR_00305	tmRNA links to Rfam database...	0.69	0.66	0.73	67	60983	34	5	20	9	35
TMR_00306	tmRNA links to Rfam database...	0.21	0.22	0.21	23	64152	86	14	72	0	83
TMR_00310	tmRNA links to Rfam database...	0.52	0.52	0.52	51	63805	55	6	41	8	47
TMR_00317	tmRNA links to Rfam database...	0.54	0.56	0.52	57	68156	55	14	38	3	45
TMR_00331	tmRNA links to Rfam database...	0.30	0.34	0.26	28	66687	90	17	63	10	54
TMR_00332	tmRNA links to Rfam database...	0.48	0.47	0.49	47	67065	53	12	37	4	52
TMR_00334	tmRNA links to Rfam database...	0.30	0.31	0.30	31	66691	76	10	63	3	70
TMR_00340	tmRNA links to Rfam database...	0.37	0.38	0.36	31	64175	79	5	50	24	50
TMR_00341	tmRNA links to Rfam database...	0.21	0.23	0.19	21	63080	97	24	65	8	71
TMR_00343	tmRNA links to Rfam database...	0.48	0.47	0.49	49	64881	59	4	46	9	56
TMR_00345	tmRNA links to Rfam database...	0.50	0.49	0.51	51	63803	55	14	35	6	53
TMR_00346	tmRNA links to Rfam database...	0.49	0.52	0.46	49	64155	59	15	42	2	45
TMR_00348	tmRNA links to Rfam database...	0.14	0.14	0.15	14	77325	100	18	64	18	85
TMR_00358	tmRNA links to Rfam database...	0.25	0.26	0.25	26	74973	96	19	60	17	73
TMR_00366	tmRNA links to Rfam database...	0.27	0.28	0.27	28	67791	90	16	61	13	72
TMR_00372	tmRNA links to Rfam database...	0.53	0.56	0.50	54	70392	67	13	41	13	42
TMR_00375	tmRNA links to Rfam database...	0.42	0.45	0.40	44	73427	73	15	50	8	54
TMR_00376	tmRNA links to Rfam database...	0.43	0.45	0.41	43	74587	79	13	48	18	52
TMR_00378	tmRNA links to Rfam database...	0.13	0.14	0.13	14	67784	109	18	80	11	83
TMR_00383	tmRNA links to Rfam database...	0.21	0.22	0.21	22	66688	94	11	74	9	78
TMR_00384	tmRNA links to Rfam database...	0.39	0.40	0.39	43	65592	74	12	56	6	65
TMR_00393	tmRNA links to Rfam database...	0.42	0.47	0.37	25	53233	69	15	28	26	28
TMR_00395	tmRNA links to Rfam database...	0.52	0.50	0.53	55	64517	52	8	40	4	54
TMR_00398	tmRNA links to Rfam database...	0.67	0.65	0.69	69	65241	37	1	30	6	37
TMR_00399	tmRNA links to Rfam database...	0.17	0.18	0.15	17	64869	98	27	67	4	77
TMR_00404	tmRNA links to Rfam database...	0.29	0.32	0.27	29	67420	90	24	55	11	63
TMR_00408	tmRNA links to Rfam database...	0.60	0.64	0.57	56	65968	51	15	27	9	32
TMR_00409	tmRNA links to Rfam database...	0.65	0.74	0.57	34	68575	75	10	16	49	12
TMR_00411	tmRNA links to Rfam database...	0.64	0.64	0.64	56	60987	41	9	23	9	31
TMR_00415	tmRNA links to Rfam database...	0.39	0.40	0.39	40	67059	67	10	52	5	61
TMR_00422	tmRNA links to Rfam database...	0.50	0.52	0.48	48	67795	62	12	41	9	44
TMR_00423	tmRNA links to Rfam database...	0.31	0.36	0.27	26	63808	88	22	47	19	47
TMR_00427	tmRNA links to Rfam database...	0.31	0.31	0.31	30	67431	74	9	58	7	67
TMR_00429	tmRNA links to Rfam database...	0.28	0.28	0.28	31	74581	88	14	65	9	78
TMR_00431	tmRNA links to Rfam database...	0.64	0.65	0.62	36	51945	72	6	16	50	19
TMR_00432	tmRNA links to Rfam database...	0.24	0.26	0.23	27	79681	100	12	80	8	77
TMR_00439	tmRNA links to Rfam database...	0.38	0.41	0.36	41	68520	84	21	53	10	60
TMR_00441	tmRNA links to Rfam database...	0.17	0.19	0.16	16	62028	92	27	57	8	67
TMR_00443	tmRNA links to Rfam database...	0.45	0.45	0.45	47	67056	60	15	43	2	57
TMR_00448	tmRNA links to Rfam database...	0.55	0.55	0.55	51	62036	48	6	35	7	41
TMR_00451	tmRNA links to Rfam database...	0.17	0.19	0.16	17	63441	88	16	72	0	72
TMR_00457	tmRNA links to Rfam database...	0.39	0.40	0.38	41	78497	75	10	58	7	61
TMR_00458	tmRNA links to Rfam database...	0.36	0.37	0.37	34	63453	68	11	48	9	59
TMR_00460	tmRNA links to Rfam database...	0.51	0.53	0.49	56	79286	65	13	46	6	50
TMR_00465	tmRNA links to Rfam database...	0.23	0.26	0.22	24	64151	88	24	62	2	70
TMR_00469	tmRNA links to Rfam database...	0.48	0.51	0.46	51	64508	66	21	40	5	49
TMR_00472	tmRNA links to Rfam database...	0.59	0.58	0.60	56	64526	52	7	31	14	41
TMR_00478	tmRNA links to Rfam database...	0.23	0.24	0.22	24	71899	90	19	68	3	75
TMR_00498	tmRNA links to Rfam database...	0.53	0.54	0.52	53	68905	59	11	37	11	46
TMR_00499	tmRNA links to Rfam database...	0.20	0.21	0.18	21	64505	102	10	84	8	78
TMR_00501	tmRNA links to Rfam database...	0.40	0.41	0.40	38	62385	63	9	49	5	54
TMR_00502	tmRNA links to Rfam database...	0.33	0.37	0.31	34	75355	86	18	59	9	59
TMR_00503	tmRNA links to Rfam database...	0.39	0.40	0.39	44	67783	73	9	60	4	67
TMR_00519	tmRNA links to Rfam database...	0.20	0.21	0.19	20	63083	97	18	69	10	75
TMR_00520	tmRNA links to Rfam database...	0.33	0.35	0.32	35	63080	85	13	62	10	64
TMR_00522	tmRNA links to Rfam database...	0.46	0.47	0.45	46	63088	65	12	44	9	51
TMR_00528	tmRNA links to Rfam database...	0.34	0.34	0.34	33	63093	75	13	51	11	64
TMR_00540	tmRNA links to Rfam database...	0.24	0.24	0.24	25	73433	82	12	66	4	79
TMR_00541	tmRNA links to Rfam database...	0.35	0.35	0.34	37	61668	77	12	59	6	68
TMR_00547	tmRNA links to Rfam database...	0.58	0.57	0.60	57	65246	43	2	36	5	43
TMR_00553	tmRNA links to Rfam database...	0.45	0.46	0.45	37	48123	50	15	30	5	44
TMR_00559	tmRNA links to Rfam database...	0.35	0.35	0.35	35	62382	68	12	52	4	66
TMR_00560	tmRNA links to Rfam database...	0.41	0.42	0.41	41	60975	68	6	53	9	57
TMR_00562	tmRNA links to Rfam database...	0.38	0.39	0.37	40	72663	76	13	55	8	62
TMR_00563	tmRNA links to Rfam database...	0.41	0.44	0.38	45	75349	80	18	54	8	58
TMR_00566	tmRNA links to Rfam database...	0.32	0.33	0.32	33	60622	76	13	58	5	67
TMR_00568	tmRNA links to Rfam database...	0.26	0.27	0.25	27	60617	88	12	70	6	72
TMR_00570	tmRNA links to Rfam database...	0.35	0.36	0.35	35	60277	74	5	61	8	62
TMR_00571	tmRNA links to Rfam database...	0.28	0.29	0.28	29	60621	84	12	64	8	70
TMR_00576	tmRNA links to Rfam database...	0.54	0.55	0.53	56	60273	58	11	38	9	46
TMR_00580	tmRNA links to Rfam database...	0.31	0.31	0.30	31	60624	78	15	56	7	69
TMR_00581	tmRNA links to Rfam database...	0.15	0.15	0.14	15	62374	99	13	79	7	83
TMR_00584	tmRNA links to Rfam database...	0.40	0.42	0.38	41	60966	74	9	59	6	56
TMR_00586	tmRNA links to Rfam database...	0.36	0.37	0.35	36	60972	68	12	55	1	61
TMR_00587	tmRNA links to Rfam database...	0.76	0.75	0.77	75	61328	28	4	18	6	25
TMR_00588	tmRNA links to Rfam database...	0.29	0.31	0.27	31	77307	92	20	63	9	70
TMR_00594	tmRNA links to Rfam database...	0.22	0.23	0.20	24	79283	99	19	75	5	80
TMR_00596	tmRNA links to Rfam database...	0.21	0.23	0.20	22	78100	101	17	71	13	73
TMR_00599	tmRNA links to Rfam database...	0.15	0.18	0.13	13	63090	94	38	49	7	59
TMR_00600	tmRNA links to Rfam database...	0.19	0.19	0.19	22	79684	96	18	76	2	93
TMR_00601	tmRNA links to Rfam database...	0.35	0.38	0.33	16	58947	79	10	23	46	26
TMR_00603	tmRNA links to Rfam database...	0.64	0.65	0.64	28	60334	78	7	9	62	15
TMR_00604	tmRNA links to Rfam database...	0.62	0.63	0.63	70	62723	48	5	37	6	42
TMR_00605	tmRNA links to Rfam database...	0.44	0.45	0.43	49	74191	67	17	48	2	59
TMR_00606	tmRNA links to Rfam database...	0.51	0.52	0.50	56	68893	66	8	49	9	51
TMR_00609	tmRNA links to Rfam database...	0.65	0.65	0.65	74	63433	44	8	31	5	39
TMR_00610	tmRNA links to Rfam database...	0.62	0.63	0.61	65	62021	54	7	35	12	39
TMR_00611	tmRNA links to Rfam database...	0.62	0.63	0.61	64	61320	47	8	33	6	38
TMR_00612	tmRNA links to Rfam database...	0.40	0.41	0.38	43	60614	74	9	60	5	61
TMR_00614	tmRNA links to Rfam database...	0.30	0.30	0.30	31	60971	79	8	65	6	73
TMR_00615	tmRNA links to Rfam database...	0.31	0.32	0.30	31	63799	83	15	58	10	65
TMR_00616	tmRNA links to Rfam database...	0.26	0.27	0.25	27	67055	83	21	58	4	72
TMR_00617	tmRNA links to Rfam database...	0.38	0.43	0.34	25	34642	54	16	33	5	33
TMR_00623	tmRNA links to Rfam database...	0.49	0.48	0.49	52	61319	63	1	53	9	56
TMR_00624	tmRNA links to Rfam database...	0.42	0.44	0.41	47	62366	78	3	65	10	61
TMR_00625	tmRNA links to Rfam database...	0.21	0.23	0.21	24	78886	97	26	67	4	82
TMR_00626	tmRNA links to Rfam database...	0.39	0.40	0.38	44	67780	78	12	60	6	65
TMR_00680	tmRNA links to Rfam database...	0.23	0.25	0.21	25	67777	94	21	73	0	74
TMR_00681	tmRNA links to Rfam database...	0.47	0.47	0.47	46	65969	61	8	43	10	51
TMR_00686	tmRNA links to Rfam database...	0.47	0.48	0.47	52	71142	73	13	46	14	56
TMR_00687	tmRNA links to Rfam database...	0.35	0.35	0.35	39	71518	85	6	68	11	72
TMR_00698	tmRNA links to Rfam database...	0.51	0.50	0.51	52	63089	52	11	38	3	52
TMR_00699	tmRNA links to Rfam database...	0.33	0.34	0.32	35	67053	77	12	61	4	67
TMR_00702	tmRNA links to Rfam database...	0.56	0.57	0.55	57	67057	52	15	32	5	43
TMR_00703	tmRNA links to Rfam database...	0.26	0.26	0.25	26	67426	82	9	67	6	73
TMR_00706	tmRNA links to Rfam database...	0.52	0.52	0.52	54	66327	53	7	42	4	49
TMR_00711	tmRNA links to Rfam database...	0.53	0.55	0.51	54	67791	57	17	34	6	44
TMR_00712	tmRNA links to Rfam database...	0.28	0.29	0.26	32	78485	96	16	73	7	77
TMR_00716	tmRNA links to Rfam database...	0.18	0.19	0.17	19	62723	93	18	75	0	81

^top

Performance of RNASLOpt - scored lower in this pairwise comparison

1. Total counts & total scores for RNASLOpt

Total Base Pair Counts
Total TP	19570
Total TN	28163113
Total FP	24136
Total FP CONTRA	3416
Total FP INCONS	18358
Total FP COMP	2362
Total FN	26891

Total Scores
MCC	0.446
Average MCC ± 95% Confidence Intervals	0.443 ± 0.014
Sensitivity	0.421
Positive Predictive Value	0.473
Nr of predictions	480

^top

2. Individual counts for RNASLOpt [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.55	0.49	0.61	37	34130	30	3	21	6	38
ASE_00002	RNaseP_arch links to Rfam database...	0.64	0.58	0.71	42	35452	20	2	15	3	31
ASE_00004	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.50	44	47807	44	2	42	0	53
ASE_00005	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.70	64	57879	32	0	27	5	53
ASE_00006	RNaseP_bact_a links to Rfam database...	0.49	0.44	0.55	41	47511	35	8	26	1	52
ASE_00007	RNaseP_bact_a links to Rfam database...	0.40	0.36	0.44	40	59594	52	1	50	1	70
ASE_00009	RNaseP_arch links to Rfam database...	0.44	0.40	0.47	27	26049	30	3	27	0	40
ASE_00012	RNaseP_bact_a links to Rfam database...	0.48	0.44	0.52	54	73817	52	8	41	3	69
ASE_00014	RNaseP_arch links to Rfam database...	0.59	0.54	0.64	57	54196	33	3	29	1	49
ASE_00017	RNaseP_nuc links to Rfam database...	0.24	0.25	0.24	16	50973	67	12	39	16	48
ASE_00020	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.65	65	73820	35	3	32	0	61
ASE_00025	RNaseP_nuc links to Rfam database...	0.22	0.23	0.21	16	78531	110	8	51	51	55
ASE_00026	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	56	59586	46	9	34	3	54
ASE_00033	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.69	64	64887	31	3	26	2	57
ASE_00035	RNaseP_bact_a links to Rfam database...	0.32	0.29	0.36	34	70406	64	4	56	4	84
ASE_00036	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.54	60	75744	54	6	45	3	72
ASE_00037	RNaseP_bact_a links to Rfam database...	0.28	0.24	0.33	26	59260	54	3	51	0	84
ASE_00038	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.41	37	53538	54	9	44	1	64
ASE_00040	RNaseP_bact_a links to Rfam database...	0.41	0.37	0.46	49	78896	63	5	53	5	84
ASE_00041	RNaseP_bact_a links to Rfam database...	0.53	0.45	0.62	49	57551	32	2	28	2	59
ASE_00044	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.69	69	54515	35	4	27	4	36
ASE_00046	RNaseP_bact_a links to Rfam database...	0.29	0.25	0.35	26	50328	50	8	41	1	77
ASE_00047	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.44	48	74196	61	1	60	0	82
ASE_00052	RNaseP_bact_a links to Rfam database...	0.46	0.43	0.51	48	61330	50	14	33	3	64
ASE_00053	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.65	73	79289	42	5	34	3	60
ASE_00056	-	0.60	0.50	0.72	36	30826	23	0	14	9	36
ASE_00064	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	41	45372	43	4	34	5	48
ASE_00066	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.69	68	72292	30	1	29	0	62
ASE_00068	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.72	47	37610	23	0	18	5	38
ASE_00074	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.61	61	67796	40	2	37	1	58
ASE_00076	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.67	64	68169	33	5	27	1	54
ASE_00077	RNaseP_bact_a links to Rfam database...	0.26	0.23	0.29	20	45081	54	7	42	5	66
ASE_00078	RNaseP_bact_a links to Rfam database...	0.40	0.35	0.46	29	43008	41	1	33	7	54
ASE_00079	RNaseP_bact_a links to Rfam database...	0.63	0.56	0.70	56	55531	26	3	21	2	44
ASE_00080	RNaseP_bact_a links to Rfam database...	0.32	0.29	0.36	36	71530	65	6	59	0	87
ASE_00081	RNaseP_bact_a links to Rfam database...	0.47	0.40	0.55	39	49699	32	4	28	0	58
ASE_00082	RNaseP_bact_a links to Rfam database...	0.44	0.39	0.51	45	70412	52	1	42	9	71
ASE_00083	RNaseP_bact_a links to Rfam database...	0.52	0.47	0.58	52	62392	43	5	32	6	58
ASE_00084	RNaseP_bact_a links to Rfam database...	0.67	0.60	0.75	59	53549	24	2	18	4	40
ASE_00089	-	0.41	0.37	0.45	29	31311	35	0	35	0	50
ASE_00090	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	45	55515	52	8	43	1	56
ASE_00092	RNaseP_bact_a links to Rfam database...	0.50	0.45	0.55	51	63453	42	5	37	0	62
ASE_00096	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.64	66	63443	38	0	37	1	49
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.57	56	64521	44	2	41	1	64
ASE_00104	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.76	77	64160	24	5	19	0	42
ASE_00105	RNaseP_bact_a links to Rfam database...	0.34	0.31	0.39	34	64174	56	6	47	3	77
ASE_00107	RNaseP_bact_a links to Rfam database...	0.40	0.35	0.45	45	73052	56	1	55	0	82
ASE_00108	RNaseP_nuc links to Rfam database...	0.19	0.21	0.17	13	46894	76	16	48	12	50
ASE_00111	RNaseP_nuc links to Rfam database...	0.19	0.25	0.16	14	49996	84	33	43	8	43
ASE_00112	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.79	70	75377	25	4	15	6	46
ASE_00115	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	58	54520	42	6	31	5	43
ASE_00116	RNaseP_arch links to Rfam database...	0.24	0.21	0.29	14	31577	35	3	32	0	52
ASE_00118	RNaseP_bact_a links to Rfam database...	0.33	0.31	0.35	32	60635	60	5	54	1	70
ASE_00119	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.73	66	62744	27	1	24	2	42
ASE_00120	RNaseP_arch links to Rfam database...	0.68	0.63	0.75	59	46892	20	4	16	0	35
ASE_00121	RNaseP_arch links to Rfam database...	0.46	0.42	0.50	39	45072	39	6	33	0	53
ASE_00122	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.63	47	43290	28	1	27	0	41
ASE_00123	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	35	38436	36	0	32	4	50
ASE_00125	RNaseP_bact_a links to Rfam database...	0.57	0.52	0.62	46	39266	29	4	24	1	42
ASE_00126	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.68	50	40396	24	5	19	0	32
ASE_00128	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.71	60	53217	24	0	24	0	40
ASE_00129	RNaseP_bact_a links to Rfam database...	0.48	0.44	0.53	49	62742	44	2	42	0	62
ASE_00131	RNaseP_bact_a links to Rfam database...	0.58	0.51	0.66	43	39275	28	0	22	6	42
ASE_00132	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.68	51	50328	25	4	20	1	44
ASE_00134	RNaseP_bact_a links to Rfam database...	0.29	0.27	0.31	26	50318	59	7	52	0	69
ASE_00135	RNaseP_bact_a links to Rfam database...	0.32	0.29	0.34	32	63097	66	3	58	5	77
ASE_00136	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.69	53	48128	32	0	24	8	39
ASE_00137	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.67	59	48428	30	0	29	1	39
ASE_00138	RNaseP_bact_a links to Rfam database...	0.44	0.40	0.50	32	40406	33	2	30	1	49
ASE_00139	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.68	58	54200	30	3	24	3	46
ASE_00140	RNaseP_bact_a links to Rfam database...	0.52	0.47	0.58	59	70774	43	7	36	0	66
ASE_00142	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	55	67051	56	4	51	1	67
ASE_00145	RNaseP_arch links to Rfam database...	0.45	0.40	0.51	44	70039	45	1	41	3	67
ASE_00146	RNaseP_bact_a links to Rfam database...	0.51	0.45	0.58	56	70779	43	5	36	2	68
ASE_00151	RNaseP_bact_a links to Rfam database...	0.33	0.30	0.37	29	51925	49	7	42	0	69
ASE_00153	RNaseP_nuc links to Rfam database...	0.49	0.53	0.46	39	57545	68	15	31	22	34
ASE_00154	RNaseP_arch links to Rfam database...	0.41	0.36	0.45	39	65255	48	3	44	1	68
ASE_00163	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.48	38	53221	51	0	42	9	55
ASE_00165	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.56	48	52889	39	5	33	1	53
ASE_00168	RNaseP_nuc links to Rfam database...	0.17	0.19	0.15	12	60647	82	18	49	15	52
ASE_00169	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.57	52	57199	40	3	37	0	55
ASE_00170	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	52	48748	29	2	26	1	41
ASE_00171	RNaseP_bact_a links to Rfam database...	0.37	0.33	0.41	31	48440	45	3	42	0	63
ASE_00172	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	54	58906	37	6	30	1	52
ASE_00174	RNaseP_bact_a links to Rfam database...	0.41	0.38	0.45	41	60984	51	10	40	1	68
ASE_00175	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	70	59935	26	6	20	0	37
ASE_00176	RNaseP_bact_a links to Rfam database...	0.58	0.51	0.66	56	59946	30	4	25	1	54
ASE_00179	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	47	44181	25	6	19	0	37
ASE_00180	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.48	41	51274	45	7	38	0	59
ASE_00181	RNaseP_bact_a links to Rfam database...	0.38	0.35	0.41	37	57540	58	1	52	5	69
ASE_00183	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.47	44	61332	49	3	46	0	69
ASE_00184	RNaseP_bact_a links to Rfam database...	0.39	0.35	0.43	36	54532	54	2	45	7	66
ASE_00185	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	76	73429	31	0	31	0	52
ASE_00186	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.69	76	78893	41	1	33	7	56
ASE_00187	RNaseP_arch links to Rfam database...	0.46	0.43	0.50	49	68537	52	7	42	3	66
ASE_00189	RNaseP_bact_b links to Rfam database...	0.26	0.24	0.28	24	63105	62	13	48	1	78
ASE_00190	RNaseP_bact_b links to Rfam database...	0.52	0.48	0.57	43	45375	39	1	32	6	47
ASE_00194	RNaseP_bact_b links to Rfam database...	0.63	0.57	0.70	68	73439	33	3	26	4	51
ASE_00196	RNaseP_arch links to Rfam database...	0.41	0.37	0.46	28	31565	36	2	31	3	47
ASE_00198	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.60	54	52560	41	4	32	5	48
ASE_00203	RNaseP_bact_a links to Rfam database...	0.68	0.61	0.76	59	46587	20	2	17	1	37
ASE_00204	RNaseP_bact_b links to Rfam database...	0.58	0.54	0.63	60	67800	41	6	30	5	52
ASE_00205	RNaseP_arch links to Rfam database...	0.43	0.41	0.46	37	45975	47	6	38	3	53
ASE_00209	RNaseP_arch links to Rfam database...	0.50	0.42	0.59	37	43008	26	2	24	0	51
ASE_00210	RNaseP_arch links to Rfam database...	0.36	0.34	0.38	22	27203	38	4	32	2	43
ASE_00213	RNaseP_arch links to Rfam database...	0.21	0.18	0.24	12	27210	41	2	37	2	54
ASE_00214	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.71	60	56195	33	0	25	8	43
ASE_00215	RNaseP_bact_a links to Rfam database...	0.54	0.48	0.59	48	48435	34	3	30	1	51
ASE_00216	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.68	50	39267	23	4	19	0	32
ASE_00217	RNaseP_bact_a links to Rfam database...	0.28	0.24	0.33	22	40404	47	6	38	3	68
ASE_00221	RNaseP_bact_a links to Rfam database...	0.31	0.26	0.36	31	64535	54	1	53	0	86
ASE_00227	RNaseP_bact_a links to Rfam database...	0.33	0.29	0.38	38	78903	62	6	56	0	95
ASE_00228	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.45	34	46895	44	8	34	2	52
ASE_00229	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.73	54	42412	22	2	18	2	33
ASE_00231	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	63	47812	21	1	19	1	33
ASE_00232	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.79	60	38427	16	7	9	0	24
ASE_00234	RNaseP_bact_a links to Rfam database...	0.43	0.37	0.49	48	75368	52	1	49	2	81
ASE_00237	RNaseP_nuc links to Rfam database...	0.08	0.09	0.07	5	45686	74	20	42	12	51
ASE_00238	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.41	43	64155	65	4	59	2	71
ASE_00240	RNaseP_bact_a links to Rfam database...	0.23	0.20	0.25	19	46590	56	3	53	0	74
ASE_00241	RNaseP_bact_a links to Rfam database...	0.56	0.48	0.66	42	43892	23	1	21	1	45
ASE_00242	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.53	50	60980	46	2	43	1	62
ASE_00246	RNaseP_nuc links to Rfam database...	0.47	0.43	0.52	29	48149	48	1	26	21	38
ASE_00247	RNaseP_nuc links to Rfam database...	0.17	0.19	0.16	12	54209	84	22	42	20	52
ASE_00248	RNaseP_bact_a links to Rfam database...	0.31	0.28	0.34	32	62388	62	1	60	1	82
ASE_00250	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.70	77	78893	36	5	28	3	54
ASE_00254	RNaseP_bact_a links to Rfam database...	0.26	0.24	0.29	20	36787	54	3	46	5	62
ASE_00255	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.56	61	74583	47	5	42	0	69
ASE_00257	RNaseP_bact_a links to Rfam database...	0.52	0.45	0.59	44	50965	31	3	28	0	53
ASE_00259	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.41	41	73053	61	4	55	2	80
ASE_00263	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	61	70399	40	4	36	0	59
ASE_00264	RNaseP_nuc links to Rfam database...	0.45	0.43	0.47	43	49050	53	6	42	5	57
ASE_00267	RNaseP_bact_a links to Rfam database...	0.24	0.22	0.27	19	45080	57	5	46	6	69
ASE_00270	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.46	51	72280	59	7	52	0	77
ASE_00274	RNaseP_bact_a links to Rfam database...	0.25	0.22	0.28	23	55528	60	4	56	0	80
ASE_00277	RNaseP_bact_a links to Rfam database...	0.28	0.25	0.32	23	48132	50	8	42	0	68
ASE_00279	RNaseP_bact_a links to Rfam database...	0.18	0.16	0.21	16	53226	60	3	56	1	85
ASE_00280	RNaseP_bact_a links to Rfam database...	0.51	0.45	0.58	44	51927	32	5	27	0	54
ASE_00281	RNaseP_bact_a links to Rfam database...	0.52	0.45	0.59	40	44483	33	0	28	5	48
ASE_00282	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.48	49	77712	54	7	47	0	78
ASE_00283	RNaseP_bact_a links to Rfam database...	0.36	0.33	0.40	35	61689	53	8	44	1	72
ASE_00284	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.57	50	58223	38	4	34	0	58
ASE_00285	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.71	66	68913	33	0	27	6	56
ASE_00286	RNaseP_bact_a links to Rfam database...	0.28	0.24	0.33	22	46599	48	1	43	4	70
ASE_00287	RNaseP_bact_a links to Rfam database...	0.28	0.23	0.33	24	54873	49	3	46	0	79
ASE_00288	RNaseP_bact_a links to Rfam database...	0.50	0.44	0.57	41	45984	31	2	29	0	52
ASE_00291	-	0.57	0.55	0.60	52	48429	35	13	22	0	42
ASE_00295	RNaseP_bact_a links to Rfam database...	0.52	0.46	0.58	60	73817	45	9	34	2	71
ASE_00297	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.61	51	52891	34	5	28	1	47
ASE_00298	RNaseP_bact_a links to Rfam database...	0.39	0.35	0.42	40	67433	56	5	50	1	73
ASE_00299	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.73	61	49371	26	2	21	3	39
ASE_00313	RNaseP_nuc links to Rfam database...	0.48	0.47	0.49	42	62395	60	9	35	16	47
ASE_00327	RNaseP_nuc links to Rfam database...	0.37	0.36	0.38	32	57206	57	17	36	4	57
ASE_00328	RNaseP_bact_b links to Rfam database...	0.58	0.54	0.63	60	72676	39	5	30	4	52
ASE_00330	RNaseP_nuc links to Rfam database...	0.43	0.42	0.43	38	56192	59	10	40	9	52
ASE_00335	RNaseP_bact_b links to Rfam database...	0.55	0.51	0.59	59	75366	48	3	38	7	57
ASE_00337	RNaseP_nuc links to Rfam database...	0.40	0.39	0.40	28	39270	53	4	38	11	43
ASE_00338	RNaseP_nuc links to Rfam database...	0.61	0.58	0.64	57	66341	50	9	23	18	41
ASE_00340	RNaseP_bact_a links to Rfam database...	0.39	0.35	0.44	30	45988	38	7	31	0	55
ASE_00342	RNaseP_bact_a links to Rfam database...	0.41	0.36	0.47	41	62394	47	1	45	1	74
ASE_00346	RNaseP_arch links to Rfam database...	0.53	0.47	0.61	46	48129	32	3	27	2	51
ASE_00353	RNaseP_bact_a links to Rfam database...	0.45	0.43	0.47	46	57872	52	8	44	0	61
ASE_00359	RNaseP_arch links to Rfam database...	0.51	0.46	0.57	37	42713	28	2	26	0	43
ASE_00360	RNaseP_arch links to Rfam database...	0.43	0.38	0.49	25	29352	26	7	19	0	40
ASE_00361	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.56	59	75360	48	2	45	1	68
ASE_00362	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.64	56	48118	32	7	24	1	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	47	51276	38	6	31	1	47
ASE_00364	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.39	36	54193	56	3	53	0	69
ASE_00366	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.43	39	58563	51	8	43	0	59
ASE_00367	RNaseP_bact_a links to Rfam database...	0.46	0.42	0.50	36	42999	41	4	32	5	50
ASE_00369	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.63	60	55850	35	3	32	0	47
ASE_00370	RNaseP_bact_a links to Rfam database...	0.57	0.51	0.63	43	41837	26	1	24	1	41
ASE_00372	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.47	44	51910	53	5	44	4	56
ASE_00374	RNaseP_bact_a links to Rfam database...	0.28	0.25	0.31	22	44779	51	4	45	2	66
ASE_00375	RNaseP_bact_a links to Rfam database...	0.65	0.58	0.72	64	60289	26	2	23	1	46
ASE_00376	RNaseP_bact_a links to Rfam database...	0.54	0.49	0.59	51	56867	38	4	31	3	54
ASE_00377	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.59	54	57539	42	1	36	5	53
ASE_00379	RNaseP_bact_a links to Rfam database...	0.44	0.39	0.49	35	45984	45	2	35	8	54
ASE_00380	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	45	54855	53	1	45	7	54
ASE_00382	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.57	40	41835	34	2	28	4	44
ASE_00383	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.56	48	54529	38	1	37	0	57
ASE_00384	RNaseP_bact_a links to Rfam database...	0.35	0.30	0.40	28	48446	51	2	40	9	64
ASE_00385	RNaseP_bact_a links to Rfam database...	0.45	0.38	0.53	31	41846	29	6	22	1	50
ASE_00386	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.55	46	50319	43	6	32	5	50
ASE_00387	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	53	55856	41	2	34	5	51
ASE_00388	RNaseP_bact_a links to Rfam database...	0.34	0.30	0.39	27	45683	51	2	41	8	62
ASE_00390	RNaseP_bact_a links to Rfam database...	0.16	0.15	0.18	13	42121	61	11	50	0	72
ASE_00393	RNaseP_bact_a links to Rfam database...	0.48	0.43	0.54	40	47821	41	3	31	7	53
ASE_00394	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.52	42	46890	42	7	32	3	51
ASE_00395	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	41	41545	37	3	27	7	43
ASE_00396	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	34	41543	42	2	37	3	49
ASE_00397	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.44	41	54522	52	3	49	0	64
ASE_00398	RNaseP_bact_a links to Rfam database...	0.29	0.26	0.33	27	55862	61	4	52	5	77
ASE_00400	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.66	61	57877	34	2	30	2	45
ASE_00401	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	74	76921	33	4	29	0	52
ASE_00402	RNaseP_bact_a links to Rfam database...	0.36	0.33	0.40	28	42416	44	5	37	2	57
ASE_00403	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.67	60	55856	29	3	26	0	47
ASE_00404	RNaseP_bact_a links to Rfam database...	0.27	0.25	0.29	21	42999	57	3	48	6	64
ASE_00406	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.54	44	48747	45	2	35	8	50
ASE_00408	-	0.23	0.21	0.25	15	32325	47	2	43	2	56
ASE_00409	-	0.57	0.52	0.62	43	40972	26	0	26	0	40
ASE_00411	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	25	49377	56	10	43	3	64
ASE_00412	RNaseP_bact_a links to Rfam database...	0.36	0.33	0.38	35	58220	56	10	46	0	70
ASE_00413	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.55	39	44480	36	2	30	4	42
ASE_00414	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.33	27	46277	59	4	52	3	68
ASE_00415	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.58	49	54861	39	2	34	3	54
ASE_00416	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.54	57	77315	53	4	45	4	70
ASE_00417	RNaseP_arch links to Rfam database...	0.43	0.41	0.45	41	54523	53	4	47	2	59
ASE_00418	RNaseP_arch links to Rfam database...	0.07	0.07	0.07	5	38710	68	4	62	2	70
ASE_00419	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	60	54850	37	6	30	1	43
ASE_00422	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.86	68	46892	16	0	11	5	26
ASE_00423	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	55	56851	47	7	40	0	54
ASE_00426	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.45	45	60976	54	11	43	0	63
ASE_00428	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	59	76529	51	3	45	3	66
ASE_00429	-	0.54	0.52	0.58	34	28144	26	3	22	1	32
ASE_00430	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.87	68	46893	15	0	10	5	29
ASE_00431	RNaseP_bact_a links to Rfam database...	0.41	0.37	0.46	35	46284	44	4	37	3	60
ASE_00434	RNaseP_bact_b links to Rfam database...	0.64	0.61	0.68	67	68167	39	9	22	8	43
ASE_00437	RNaseP_bact_a links to Rfam database...	0.40	0.36	0.45	48	79294	60	3	56	1	87
ASE_00438	RNaseP_bact_a links to Rfam database...	0.42	0.36	0.48	42	65979	46	3	42	1	74
ASE_00441	RNaseP_bact_a links to Rfam database...	0.55	0.49	0.62	55	64172	34	3	31	0	57
ASE_00447	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.69	67	60281	34	2	28	4	49
ASE_00448	RNaseP_bact_a links to Rfam database...	0.41	0.38	0.46	42	64169	55	10	40	5	70
ASE_00451	RNaseP_bact_a links to Rfam database...	0.44	0.40	0.48	50	70772	55	3	51	1	75
CRW_00016	Intron_gpI links to Rfam database...	0.48	0.45	0.52	54	77317	58	5	45	8	66
CRW_00608	-	0.73	0.67	0.80	53	35712	13	1	12	0	26
CRW_00610	Intron_gpI links to Rfam database...	0.06	0.06	0.07	5	36246	64	9	55	0	76
CRW_00611	-	0.75	0.68	0.84	51	31314	13	1	9	3	24
CRW_00613	Intron_gpI links to Rfam database...	0.59	0.50	0.70	39	34924	24	1	16	7	39
CRW_00618	Intron_gpI links to Rfam database...	0.21	0.21	0.21	13	56218	62	6	43	13	48
CRW_00633	Intron_gpI links to Rfam database...	0.50	0.49	0.51	52	63444	52	5	45	2	54
CRW_00634	Intron_gpI links to Rfam database...	0.50	0.50	0.51	47	64527	48	11	35	2	47
CRW_00641	-	0.23	0.22	0.24	17	39831	66	8	47	11	59
CRW_00642	-	0.40	0.45	0.36	29	47198	62	15	36	11	36
CRW_00645	-	0.43	0.43	0.43	29	35443	39	10	29	0	38
CRW_00646	-	0.53	0.53	0.54	34	34917	32	6	23	3	30
CRW_00654	-	0.84	0.79	0.90	98	78101	14	1	10	3	26
CRW_00658	-	0.39	0.37	0.40	38	74597	58	9	47	2	64
CRW_00659	-	0.19	0.20	0.18	12	32320	54	9	44	1	49
CRW_00660	-	0.35	0.35	0.34	21	22094	40	6	34	0	39
CRW_00661	-	0.27	0.27	0.26	14	24256	47	7	33	7	37
CRW_00662	-	0.31	0.31	0.32	20	28617	52	3	40	9	45
CRW_00663	-	0.16	0.16	0.17	10	26046	55	4	46	5	51
CRW_00664	-	0.17	0.17	0.17	13	53551	71	8	56	7	65
CRW_00665	-	0.00	0.00	0.00	0	23601	53	11	41	1	48
CRW_00670	Intron_gpI links to Rfam database...	0.45	0.43	0.47	52	70015	58	8	50	0	68
CRW_00671	Intron_gpI links to Rfam database...	0.60	0.53	0.68	62	62744	32	2	27	3	55
CRW_00672	Intron_gpI links to Rfam database...	0.43	0.41	0.45	45	72291	57	6	48	3	66
CRW_00677	-	0.50	0.50	0.50	52	71906	54	7	45	2	53
CRW_00679	-	0.35	0.36	0.36	38	76529	70	11	58	1	69
CRW_00687	-	0.55	0.53	0.57	35	28619	30	8	18	4	31
CRW_00688	-	0.74	0.70	0.78	40	21894	12	1	10	1	17
CRW_00689	-	0.38	0.38	0.39	29	33596	50	3	42	5	48
CRW_00690	-	0.58	0.54	0.63	37	33352	26	4	18	4	32
CRW_00691	-	0.47	0.45	0.50	30	27201	31	4	26	1	37
CRW_00692	Intron_gpI links to Rfam database...	0.33	0.34	0.33	31	68540	77	20	44	13	59
CRW_00703	-	0.25	0.26	0.25	17	40402	52	7	44	1	49
CRW_00715	-	0.79	0.73	0.86	76	69290	14	1	11	2	28
CRW_00721	-	0.65	0.66	0.64	45	58583	51	7	18	26	23
PDB_00078	-	0.35	0.32	0.38	37	49673	60	6	54	0	78
PDB_00278	-	0.38	0.36	0.41	26	24912	38	3	35	0	46
PDB_00423	-	0.17	0.16	0.18	12	26729	55	6	49	0	62
PDB_00701	-	0.32	0.30	0.33	33	45352	67	6	60	1	76
PDB_00747	-	0.69	0.55	0.86	44	24480	7	1	6	0	36
PDB_00827	Intron_gpI links to Rfam database...	0.74	0.60	0.91	49	26974	7	0	5	2	32
PDB_00917	-	0.44	0.42	0.47	40	35160	48	7	38	3	55
PDB_00919	RNaseP_bact_a links to Rfam database...	0.37	0.33	0.41	34	44171	50	5	43	2	69
PDB_01129	-	0.42	0.45	0.40	32	35430	53	22	27	4	39
PDB_01157	-	0.11	0.10	0.13	10	50009	67	6	61	0	88
TMR_00007	tmRNA links to Rfam database...	0.30	0.30	0.31	32	61674	76	9	61	6	76
TMR_00008	tmRNA links to Rfam database...	0.44	0.42	0.46	44	65970	59	9	43	7	62
TMR_00010	tmRNA links to Rfam database...	0.51	0.48	0.55	46	57886	39	8	30	1	50
TMR_00012	tmRNA links to Rfam database...	0.26	0.27	0.26	22	64535	78	17	46	15	59
TMR_00014	tmRNA links to Rfam database...	0.64	0.62	0.67	68	68534	38	7	26	5	42
TMR_00017	tmRNA links to Rfam database...	0.29	0.27	0.32	28	67073	64	7	53	4	74
TMR_00018	tmRNA links to Rfam database...	0.36	0.36	0.36	33	64528	61	12	47	2	59
TMR_00028	tmRNA links to Rfam database...	0.67	0.65	0.70	63	62745	28	14	13	1	34
TMR_00030	tmRNA links to Rfam database...	0.35	0.34	0.37	38	75751	70	15	51	4	73
TMR_00034	tmRNA links to Rfam database...	0.67	0.64	0.71	70	59933	34	1	27	6	40
TMR_00035	tmRNA links to Rfam database...	0.37	0.38	0.37	37	67797	67	9	53	5	61
TMR_00038	tmRNA links to Rfam database...	0.30	0.28	0.32	31	71155	71	3	64	4	79
TMR_00042	tmRNA links to Rfam database...	0.30	0.30	0.31	29	62742	66	10	54	2	69
TMR_00046	tmRNA links to Rfam database...	0.40	0.40	0.41	38	62742	59	10	45	4	58
TMR_00047	tmRNA links to Rfam database...	0.28	0.33	0.24	19	48437	71	16	44	11	38
TMR_00048	tmRNA links to Rfam database...	0.53	0.53	0.54	50	64887	48	15	28	5	45
TMR_00049	tmRNA links to Rfam database...	0.36	0.36	0.37	31	63106	57	7	46	4	56
TMR_00051	tmRNA links to Rfam database...	0.67	0.60	0.75	56	65628	34	3	16	15	38
TMR_00055	tmRNA links to Rfam database...	0.40	0.38	0.43	43	78903	62	10	47	5	71
TMR_00057	tmRNA links to Rfam database...	0.08	0.09	0.07	7	73822	98	28	63	7	72
TMR_00061	tmRNA links to Rfam database...	0.14	0.14	0.15	14	59590	89	13	68	8	85
TMR_00062	tmRNA links to Rfam database...	0.55	0.56	0.54	58	78499	55	12	37	6	46
TMR_00064	tmRNA links to Rfam database...	0.28	0.28	0.29	29	76927	72	20	52	0	74
TMR_00065	tmRNA links to Rfam database...	0.41	0.39	0.43	41	76541	55	15	39	1	65
TMR_00073	tmRNA links to Rfam database...	0.34	0.31	0.38	36	65608	59	6	53	0	81
TMR_00076	tmRNA links to Rfam database...	0.48	0.48	0.49	48	70778	57	10	40	7	52
TMR_00080	tmRNA links to Rfam database...	0.26	0.27	0.26	26	70399	75	26	49	0	70
TMR_00081	tmRNA links to Rfam database...	0.46	0.42	0.51	44	67075	44	3	39	2	62
TMR_00082	tmRNA links to Rfam database...	0.57	0.54	0.59	52	67808	39	12	24	3	44
TMR_00083	tmRNA links to Rfam database...	0.59	0.55	0.64	58	68174	41	5	28	8	47
TMR_00092	tmRNA links to Rfam database...	0.63	0.64	0.62	65	67423	45	12	28	5	36
TMR_00093	tmRNA links to Rfam database...	0.50	0.50	0.51	51	64161	56	13	36	7	51
TMR_00096	tmRNA links to Rfam database...	0.12	0.12	0.13	12	64886	86	17	65	4	88
TMR_00101	tmRNA links to Rfam database...	0.53	0.50	0.55	54	64163	56	7	37	12	53
TMR_00102	tmRNA links to Rfam database...	0.43	0.44	0.44	44	64160	60	15	42	3	57
TMR_00103	tmRNA links to Rfam database...	0.42	0.42	0.42	45	64155	61	8	53	0	63
TMR_00104	-	0.06	0.07	0.06	5	66709	83	29	52	2	65
TMR_00116	tmRNA links to Rfam database...	0.52	0.47	0.57	49	64894	50	2	35	13	55
TMR_00119	tmRNA links to Rfam database...	0.53	0.49	0.58	51	71922	43	7	30	6	53
TMR_00123	tmRNA links to Rfam database...	0.43	0.39	0.47	39	66347	49	5	39	5	62
TMR_00124	tmRNA links to Rfam database...	0.58	0.55	0.61	54	70412	41	4	30	7	44
TMR_00125	tmRNA links to Rfam database...	0.28	0.27	0.28	27	64165	73	12	57	4	72
TMR_00127	tmRNA links to Rfam database...	0.53	0.48	0.58	47	62754	40	4	30	6	50
TMR_00128	tmRNA links to Rfam database...	0.64	0.63	0.66	60	60984	33	11	20	2	36
TMR_00131	tmRNA links to Rfam database...	0.30	0.27	0.33	27	64899	60	10	44	6	72
TMR_00135	tmRNA links to Rfam database...	0.57	0.56	0.59	55	62742	41	9	29	3	44
TMR_00136	tmRNA links to Rfam database...	0.27	0.27	0.28	27	74595	72	15	54	3	74
TMR_00137	tmRNA links to Rfam database...	0.18	0.19	0.18	17	60980	79	17	61	1	72
TMR_00139	tmRNA links to Rfam database...	0.54	0.56	0.52	51	62030	53	19	28	6	40
TMR_00140	tmRNA links to Rfam database...	0.46	0.44	0.48	44	73829	57	5	42	10	56
TMR_00142	tmRNA links to Rfam database...	0.55	0.52	0.58	53	70785	47	8	30	9	49
TMR_00143	tmRNA links to Rfam database...	0.61	0.55	0.66	57	64534	39	9	20	10	46
TMR_00144	tmRNA links to Rfam database...	0.37	0.36	0.39	37	74209	59	12	47	0	66
TMR_00146	tmRNA links to Rfam database...	0.83	0.79	0.87	33	32093	30	3	2	25	9
TMR_00150	tmRNA links to Rfam database...	0.64	0.62	0.67	26	43032	47	3	10	34	16
TMR_00155	tmRNA links to Rfam database...	0.58	0.55	0.62	57	61684	43	5	30	8	47
TMR_00156	tmRNA links to Rfam database...	0.21	0.21	0.22	20	60286	76	14	58	4	77
TMR_00158	tmRNA links to Rfam database...	0.36	0.33	0.40	33	60643	54	10	40	4	66
TMR_00159	tmRNA links to Rfam database...	0.26	0.27	0.26	25	62032	71	17	54	0	67
TMR_00160	tmRNA links to Rfam database...	0.47	0.47	0.47	45	64524	60	15	36	9	50
TMR_00164	tmRNA links to Rfam database...	0.34	0.32	0.36	34	66700	69	6	55	8	72
TMR_00165	tmRNA links to Rfam database...	0.47	0.44	0.49	43	61689	51	10	34	7	54
TMR_00166	tmRNA links to Rfam database...	0.36	0.36	0.36	36	61676	68	11	53	4	65
TMR_00168	tmRNA links to Rfam database...	0.55	0.52	0.58	59	60974	45	3	39	3	55
TMR_00173	tmRNA links to Rfam database...	0.32	0.36	0.29	15	42143	57	14	23	20	27
TMR_00179	tmRNA links to Rfam database...	0.22	0.21	0.23	21	67070	76	10	60	6	77
TMR_00180	tmRNA links to Rfam database...	0.52	0.51	0.54	50	67069	50	9	33	8	49
TMR_00182	tmRNA links to Rfam database...	0.41	0.38	0.44	39	66342	54	7	42	5	63
TMR_00183	tmRNA links to Rfam database...	0.18	0.17	0.18	18	63090	88	14	68	6	85
TMR_00184	tmRNA links to Rfam database...	0.43	0.41	0.45	42	63097	53	4	47	2	60
TMR_00193	tmRNA links to Rfam database...	0.24	0.24	0.25	19	59264	64	19	38	7	61
TMR_00194	tmRNA links to Rfam database...	0.52	0.48	0.56	45	62755	40	10	25	5	48
TMR_00196	tmRNA links to Rfam database...	0.18	0.18	0.19	17	60986	78	9	63	6	80
TMR_00199	tmRNA links to Rfam database...	0.51	0.51	0.51	47	62742	52	19	27	6	45
TMR_00200	-	0.26	0.25	0.27	19	41546	60	7	44	9	56
TMR_00204	tmRNA links to Rfam database...	0.44	0.41	0.47	40	60292	52	18	28	6	57
TMR_00207	tmRNA links to Rfam database...	0.10	0.10	0.11	10	72296	88	6	78	4	93
TMR_00223	tmRNA links to Rfam database...	0.31	0.31	0.32	29	64171	65	8	53	4	66
TMR_00224	tmRNA links to Rfam database...	0.54	0.51	0.58	52	64890	44	4	34	6	49
TMR_00226	tmRNA links to Rfam database...	0.36	0.32	0.40	34	69665	57	8	44	5	71
TMR_00227	tmRNA links to Rfam database...	0.54	0.53	0.56	54	70028	46	11	32	3	47
TMR_00234	tmRNA links to Rfam database...	0.60	0.55	0.66	56	58911	36	6	23	7	46
TMR_00239	tmRNA links to Rfam database...	0.48	0.47	0.50	45	61686	46	8	37	1	51
TMR_00240	tmRNA links to Rfam database...	0.47	0.47	0.48	40	63106	50	7	37	6	45
TMR_00246	-	0.73	0.71	0.75	24	78178	87	2	6	79	10
TMR_00248	tmRNA links to Rfam database...	0.13	0.16	0.11	6	54232	80	22	25	33	32
TMR_00257	tmRNA links to Rfam database...	0.26	0.24	0.28	24	67074	68	9	54	5	74
TMR_00259	tmRNA links to Rfam database...	0.31	0.29	0.33	30	67806	60	11	49	0	73
TMR_00261	tmRNA links to Rfam database...	0.43	0.43	0.43	43	66695	58	13	44	1	58
TMR_00262	tmRNA links to Rfam database...	0.34	0.35	0.34	36	74199	74	19	51	4	68
TMR_00271	tmRNA links to Rfam database...	0.41	0.38	0.43	35	64180	53	15	31	7	56
TMR_00274	tmRNA links to Rfam database...	0.62	0.57	0.67	60	66705	35	6	24	5	45
TMR_00278	tmRNA links to Rfam database...	0.41	0.40	0.41	41	67796	67	9	50	8	61
TMR_00279	tmRNA links to Rfam database...	0.42	0.41	0.42	39	68913	64	10	44	10	55
TMR_00280	tmRNA links to Rfam database...	0.61	0.61	0.60	62	65963	47	9	32	6	39
TMR_00283	tmRNA links to Rfam database...	0.35	0.36	0.34	35	65239	69	16	51	2	61
TMR_00289	tmRNA links to Rfam database...	0.38	0.38	0.39	37	67067	68	12	45	11	61
TMR_00290	tmRNA links to Rfam database...	0.18	0.18	0.17	17	64161	87	7	76	4	75
TMR_00296	tmRNA links to Rfam database...	0.31	0.31	0.31	30	68910	71	19	47	5	68
TMR_00298	tmRNA links to Rfam database...	0.34	0.35	0.34	35	68162	74	11	57	6	66
TMR_00300	tmRNA links to Rfam database...	0.75	0.70	0.81	78	70404	29	3	15	11	34
TMR_00302	tmRNA links to Rfam database...	0.23	0.23	0.23	22	77324	81	19	56	6	72
TMR_00305	tmRNA links to Rfam database...	0.34	0.30	0.39	31	60995	55	6	43	6	71
TMR_00306	tmRNA links to Rfam database...	0.39	0.38	0.40	40	64160	64	11	50	3	66
TMR_00310	tmRNA links to Rfam database...	0.50	0.46	0.54	45	63819	52	6	33	13	53
TMR_00317	tmRNA links to Rfam database...	0.36	0.37	0.36	38	68159	71	14	54	3	64
TMR_00331	tmRNA links to Rfam database...	0.61	0.61	0.60	50	66712	44	7	26	11	32
TMR_00332	tmRNA links to Rfam database...	0.31	0.28	0.34	28	67079	58	9	45	4	71
TMR_00334	tmRNA links to Rfam database...	0.31	0.30	0.32	30	66702	67	10	53	4	71
TMR_00340	tmRNA links to Rfam database...	0.47	0.44	0.49	36	64188	58	4	33	21	45
TMR_00341	tmRNA links to Rfam database...	0.34	0.34	0.34	31	63099	62	12	48	2	61
TMR_00343	tmRNA links to Rfam database...	0.59	0.53	0.64	56	64893	41	2	29	10	49
TMR_00345	tmRNA links to Rfam database...	0.61	0.57	0.66	59	63814	37	3	27	7	45
TMR_00346	tmRNA links to Rfam database...	0.54	0.51	0.57	48	64177	40	10	26	4	46
TMR_00348	tmRNA links to Rfam database...	0.43	0.41	0.44	41	77328	72	11	41	20	58
TMR_00358	tmRNA links to Rfam database...	0.69	0.68	0.71	67	74984	47	8	19	20	32
TMR_00366	tmRNA links to Rfam database...	0.44	0.42	0.47	42	67806	52	11	37	4	58
TMR_00372	tmRNA links to Rfam database...	0.54	0.52	0.56	50	70411	50	8	31	11	46
TMR_00375	tmRNA links to Rfam database...	0.34	0.34	0.34	33	73438	70	15	50	5	65
TMR_00376	tmRNA links to Rfam database...	0.50	0.48	0.52	46	74602	52	13	30	9	49
TMR_00378	tmRNA links to Rfam database...	0.42	0.40	0.44	39	67808	53	12	37	4	58
TMR_00383	tmRNA links to Rfam database...	0.24	0.24	0.24	24	66696	80	22	53	5	76
TMR_00384	tmRNA links to Rfam database...	0.32	0.30	0.34	32	65609	67	2	60	5	76
TMR_00393	tmRNA links to Rfam database...	0.56	0.62	0.51	33	53236	59	16	16	27	20
TMR_00395	tmRNA links to Rfam database...	0.60	0.54	0.67	59	64532	34	4	25	5	50
TMR_00398	tmRNA links to Rfam database...	0.68	0.62	0.73	66	65251	29	2	22	5	40
TMR_00399	tmRNA links to Rfam database...	0.31	0.30	0.32	28	64892	65	13	47	5	66
TMR_00404	tmRNA links to Rfam database...	0.35	0.37	0.34	34	67428	74	11	55	8	58
TMR_00408	tmRNA links to Rfam database...	0.58	0.60	0.55	53	65970	52	17	26	9	35
TMR_00409	tmRNA links to Rfam database...	0.57	0.61	0.54	28	68583	57	10	14	33	18
TMR_00411	tmRNA links to Rfam database...	0.41	0.43	0.40	37	60982	65	12	44	9	50
TMR_00415	tmRNA links to Rfam database...	0.53	0.50	0.55	51	67069	43	4	37	2	50
TMR_00422	tmRNA links to Rfam database...	0.54	0.53	0.56	49	67808	46	8	31	7	43
TMR_00423	tmRNA links to Rfam database...	0.51	0.53	0.49	39	63823	56	16	25	15	34
TMR_00427	tmRNA links to Rfam database...	0.38	0.37	0.40	36	67438	61	8	46	7	61
TMR_00429	tmRNA links to Rfam database...	0.22	0.21	0.23	23	74592	82	12	64	6	86
TMR_00431	tmRNA links to Rfam database...	0.68	0.62	0.76	34	51958	47	5	6	36	21
TMR_00432	tmRNA links to Rfam database...	0.54	0.53	0.55	55	79700	53	13	32	8	49
TMR_00439	tmRNA links to Rfam database...	0.35	0.36	0.34	36	68530	71	15	54	2	65
TMR_00441	tmRNA links to Rfam database...	0.17	0.18	0.16	15	62035	79	20	58	1	68
TMR_00443	tmRNA links to Rfam database...	0.32	0.28	0.36	29	67080	58	5	47	6	75
TMR_00448	tmRNA links to Rfam database...	0.30	0.29	0.32	27	62043	58	6	52	0	65
TMR_00451	tmRNA links to Rfam database...	0.25	0.22	0.28	20	63475	55	7	44	4	69
TMR_00457	tmRNA links to Rfam database...	0.29	0.28	0.30	29	78508	73	14	55	4	73
TMR_00458	tmRNA links to Rfam database...	0.26	0.25	0.28	23	63464	69	8	51	10	70
TMR_00460	tmRNA links to Rfam database...	0.39	0.39	0.40	41	79299	65	13	48	4	65
TMR_00465	tmRNA links to Rfam database...	0.24	0.24	0.24	23	64167	75	16	55	4	71
TMR_00469	tmRNA links to Rfam database...	0.34	0.33	0.35	33	64525	62	10	52	0	67
TMR_00472	tmRNA links to Rfam database...	0.23	0.24	0.23	23	64522	77	18	57	2	74
TMR_00478	tmRNA links to Rfam database...	0.15	0.16	0.15	16	71903	94	20	71	3	83
TMR_00498	tmRNA links to Rfam database...	0.25	0.25	0.25	25	68907	74	15	59	0	74
TMR_00499	tmRNA links to Rfam database...	0.13	0.14	0.13	14	64510	101	5	91	5	85
TMR_00501	tmRNA links to Rfam database...	0.44	0.43	0.44	40	62391	52	12	38	2	52
TMR_00502	tmRNA links to Rfam database...	0.30	0.30	0.31	28	75375	71	12	51	8	65
TMR_00503	tmRNA links to Rfam database...	0.47	0.45	0.50	50	67795	58	0	51	7	61
TMR_00519	tmRNA links to Rfam database...	0.24	0.24	0.24	23	63095	82	13	59	10	72
TMR_00520	tmRNA links to Rfam database...	0.31	0.29	0.33	29	63102	70	5	54	11	70
TMR_00522	tmRNA links to Rfam database...	0.25	0.24	0.27	23	63104	74	11	52	11	74
TMR_00528	tmRNA links to Rfam database...	0.13	0.12	0.14	12	63102	86	8	68	10	85
TMR_00540	tmRNA links to Rfam database...	0.44	0.42	0.45	44	73438	55	15	39	1	60
TMR_00541	tmRNA links to Rfam database...	0.49	0.47	0.51	49	61680	49	3	44	2	56
TMR_00547	tmRNA links to Rfam database...	0.46	0.43	0.49	43	65253	45	1	44	0	57
TMR_00553	tmRNA links to Rfam database...	0.32	0.30	0.36	24	48138	49	4	39	6	57
TMR_00559	tmRNA links to Rfam database...	0.37	0.36	0.39	36	62389	56	11	45	0	65
TMR_00560	tmRNA links to Rfam database...	0.57	0.54	0.60	53	60987	36	5	30	1	45
TMR_00562	tmRNA links to Rfam database...	0.39	0.36	0.42	37	72683	58	9	42	7	65
TMR_00563	tmRNA links to Rfam database...	0.33	0.34	0.32	35	75358	75	16	57	2	68
TMR_00566	tmRNA links to Rfam database...	0.46	0.46	0.46	46	60626	54	7	47	0	54
TMR_00568	tmRNA links to Rfam database...	0.33	0.31	0.34	31	60635	66	9	51	6	68
TMR_00570	tmRNA links to Rfam database...	0.41	0.41	0.41	40	60280	64	6	52	6	57
TMR_00571	tmRNA links to Rfam database...	0.35	0.33	0.38	33	60639	62	8	46	8	66
TMR_00576	tmRNA links to Rfam database...	0.35	0.32	0.39	33	60293	57	5	47	5	69
TMR_00580	tmRNA links to Rfam database...	0.37	0.34	0.40	34	60642	55	8	42	5	66
TMR_00581	tmRNA links to Rfam database...	0.58	0.55	0.61	54	62392	35	3	32	0	44
TMR_00584	tmRNA links to Rfam database...	0.46	0.43	0.48	42	60988	52	5	40	7	55
TMR_00586	tmRNA links to Rfam database...	0.46	0.38	0.55	37	61008	35	1	29	5	60
TMR_00587	tmRNA links to Rfam database...	0.68	0.65	0.71	65	61333	29	4	23	2	35
TMR_00588	tmRNA links to Rfam database...	0.30	0.31	0.30	31	77317	78	22	51	5	70
TMR_00594	tmRNA links to Rfam database...	0.48	0.48	0.49	50	79299	57	10	42	5	54
TMR_00596	tmRNA links to Rfam database...	0.28	0.27	0.29	26	78120	72	18	46	8	69
TMR_00599	tmRNA links to Rfam database...	0.40	0.42	0.38	30	63111	62	11	38	13	42
TMR_00600	tmRNA links to Rfam database...	0.30	0.29	0.31	33	79694	74	15	58	1	82
TMR_00601	tmRNA links to Rfam database...	0.27	0.29	0.25	12	58948	80	10	26	44	30
TMR_00603	tmRNA links to Rfam database...	0.59	0.60	0.58	26	60333	66	10	9	47	17
TMR_00604	tmRNA links to Rfam database...	0.56	0.54	0.59	61	62731	43	7	36	0	51
TMR_00605	tmRNA links to Rfam database...	0.50	0.48	0.52	52	74205	51	12	36	3	56
TMR_00606	tmRNA links to Rfam database...	0.53	0.50	0.56	54	68909	48	6	37	5	53
TMR_00609	tmRNA links to Rfam database...	0.71	0.68	0.75	77	63443	26	6	20	0	36
TMR_00610	tmRNA links to Rfam database...	0.63	0.60	0.67	62	62035	45	4	27	14	42
TMR_00611	tmRNA links to Rfam database...	0.62	0.62	0.62	63	61324	42	8	30	4	39
TMR_00612	tmRNA links to Rfam database...	0.42	0.41	0.42	43	60624	59	7	52	0	61
TMR_00614	tmRNA links to Rfam database...	0.70	0.67	0.74	70	60980	33	3	22	8	34
TMR_00615	tmRNA links to Rfam database...	0.56	0.54	0.58	52	63814	48	8	29	11	44
TMR_00616	tmRNA links to Rfam database...	0.44	0.43	0.46	43	67067	56	8	43	5	56
TMR_00617	tmRNA links to Rfam database...	0.39	0.41	0.38	24	34652	42	8	32	2	34
TMR_00623	tmRNA links to Rfam database...	0.36	0.32	0.40	35	61337	56	3	50	3	73
TMR_00624	tmRNA links to Rfam database...	0.69	0.67	0.71	72	62379	32	10	20	2	36
TMR_00625	tmRNA links to Rfam database...	0.46	0.47	0.45	50	78893	66	17	43	6	56
TMR_00626	tmRNA links to Rfam database...	0.33	0.32	0.33	35	67791	71	10	60	1	74
TMR_00680	tmRNA links to Rfam database...	0.31	0.31	0.32	31	67798	71	14	53	4	68
TMR_00681	tmRNA links to Rfam database...	0.50	0.48	0.51	47	65974	55	6	39	10	50
TMR_00686	tmRNA links to Rfam database...	0.42	0.41	0.44	44	71153	60	14	42	4	64
TMR_00687	tmRNA links to Rfam database...	0.54	0.50	0.58	56	71535	44	8	32	4	55
TMR_00698	tmRNA links to Rfam database...	0.49	0.49	0.50	51	63088	51	16	35	0	53
TMR_00699	tmRNA links to Rfam database...	0.52	0.45	0.61	46	67085	34	0	30	4	56
TMR_00702	tmRNA links to Rfam database...	0.41	0.38	0.44	38	67074	56	7	42	7	62
TMR_00703	tmRNA links to Rfam database...	0.26	0.24	0.29	24	67444	64	5	55	4	75
TMR_00706	tmRNA links to Rfam database...	0.37	0.34	0.40	35	66342	54	11	42	1	68
TMR_00711	tmRNA links to Rfam database...	0.47	0.45	0.49	44	67807	52	15	30	7	54
TMR_00712	tmRNA links to Rfam database...	0.30	0.29	0.31	32	78502	79	16	56	7	77
TMR_00716	tmRNA links to Rfam database...	0.17	0.16	0.18	16	62744	79	7	68	4	84

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of RNAsubopt - scored higher in this pairwise comparison

1. Total counts & total scores for RNAsubopt

2. Individual counts for RNAsubopt [ download as .csv ]

Performance of RNASLOpt - scored lower in this pairwise comparison

1. Total counts & total scores for RNASLOpt

2. Individual counts for RNASLOpt [ download as .csv ]