CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	RNAsubopt		RNAshapes
MCC	0.472	>	0.408
Average MCC ± 95% Confidence Intervals	0.471 ± 0.014	>	0.407 ± 0.015
Sensitivity	0.479	>	0.404
Positive Predictive Value	0.467	>	0.414
Total TP	24952	>	21058
Total TN	32228807	<	32231367
Total FP	32213	<	33202
Total FP CONTRA	4931	>	4752
Total FP INCONS	23569	<	25082
Total FP COMP	3713	>	3368
Total FN	27166	<	31060
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of RNAsubopt and RNAshapes. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RNAsubopt and RNAshapes).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for RNAsubopt and RNAshapes).
Comparison of average Matthews Correlation Coefficients (MCCs) for RNAsubopt and RNAshapes. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RNAsubopt and RNAshapes).

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Performance of RNAsubopt - scored higher in this pairwise comparison

1. Total counts & total scores for RNAsubopt

Total Base Pair Counts
Total TP	24952
Total TN	32228807
Total FP	32213
Total FP CONTRA	4931
Total FP INCONS	23569
Total FP COMP	3713
Total FN	27166

Total Scores
MCC	0.472
Average MCC ± 95% Confidence Intervals	0.471 ± 0.014
Sensitivity	0.479
Positive Predictive Value	0.467
Nr of predictions	526

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2. Individual counts for RNAsubopt [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.74	0.73	0.74	55	34117	26	4	15	7	20
ASE_00002	RNaseP_arch links to Rfam database...	0.63	0.62	0.64	45	35441	30	4	21	5	28
ASE_00004	RNaseP_bact_a links to Rfam database...	0.78	0.78	0.78	76	47798	22	2	19	1	21
ASE_00005	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.57	62	57861	51	2	45	4	55
ASE_00006	RNaseP_bact_a links to Rfam database...	0.55	0.56	0.54	52	47489	46	5	40	1	41
ASE_00007	RNaseP_bact_a links to Rfam database...	0.37	0.37	0.37	41	59575	71	1	68	2	69
ASE_00009	RNaseP_arch links to Rfam database...	0.71	0.70	0.72	47	26041	21	3	15	3	20
ASE_00012	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.44	53	73800	71	10	57	4	70
ASE_00014	RNaseP_arch links to Rfam database...	0.42	0.43	0.42	46	54175	67	10	54	3	60
ASE_00017	RNaseP_nuc links to Rfam database...	0.30	0.34	0.26	22	50955	83	20	43	20	42
ASE_00018	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.70	86	80479	39	1	35	3	48
ASE_00020	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.47	59	73795	66	10	56	0	67
ASE_00022	RNaseP_bact_b links to Rfam database...	0.47	0.48	0.47	59	82903	73	6	60	7	65
ASE_00023	RNaseP_bact_a links to Rfam database...	0.56	0.57	0.56	72	84127	60	5	51	4	55
ASE_00025	RNaseP_nuc links to Rfam database...	0.24	0.28	0.20	20	78506	124	21	59	44	51
ASE_00026	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	56	59580	57	1	48	8	54
ASE_00028	RNaseP_bact_b links to Rfam database...	0.70	0.67	0.72	85	84548	42	6	27	9	41
ASE_00029	RNaseP_bact_a links to Rfam database...	0.36	0.36	0.35	44	82904	82	15	65	2	78
ASE_00030	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	90	85355	46	5	41	0	55
ASE_00031	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.56	69	86612	61	3	52	6	57
ASE_00032	RNaseP_bact_a links to Rfam database...	0.60	0.60	0.60	71	80082	55	3	44	8	47
ASE_00033	RNaseP_bact_a links to Rfam database...	0.50	0.45	0.54	55	64879	47	3	43	1	66
ASE_00035	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.38	42	70389	76	11	58	7	76
ASE_00036	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.48	59	75731	68	8	57	3	73
ASE_00037	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.45	44	59242	57	1	53	3	66
ASE_00038	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.52	51	53529	49	3	45	1	50
ASE_00040	RNaseP_bact_a links to Rfam database...	0.36	0.35	0.37	47	78876	88	4	76	8	86
ASE_00044	RNaseP_bact_a links to Rfam database...	0.69	0.70	0.70	73	54510	36	3	29	4	32
ASE_00046	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	52	50304	47	3	44	0	51
ASE_00047	RNaseP_bact_a links to Rfam database...	0.34	0.32	0.36	42	74188	76	5	70	1	88
ASE_00052	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.54	52	61329	49	2	42	5	60
ASE_00053	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	64	79275	68	7	55	6	69
ASE_00056	-	0.36	0.36	0.36	26	30803	51	5	42	4	46
ASE_00057	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.65	83	82087	50	9	36	5	51
ASE_00064	RNaseP_bact_a links to Rfam database...	0.36	0.38	0.35	34	45353	68	8	56	4	55
ASE_00066	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.49	55	72278	59	2	55	2	75
ASE_00068	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	44	37597	35	0	34	1	41
ASE_00069	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.70	91	82898	46	5	34	7	49
ASE_00074	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.58	69	67777	50	6	44	0	50
ASE_00077	RNaseP_bact_a links to Rfam database...	0.28	0.28	0.28	24	45065	66	8	53	5	62
ASE_00078	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.69	57	42988	31	5	21	5	26
ASE_00079	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	52	55515	44	5	39	0	48
ASE_00080	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.44	51	71514	69	8	58	3	72
ASE_00081	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	53	49681	41	0	36	5	44
ASE_00082	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.46	51	70389	70	5	55	10	65
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.78	81	62377	30	2	21	7	29
ASE_00084	RNaseP_bact_a links to Rfam database...	0.60	0.60	0.61	59	53532	45	2	35	8	40
ASE_00087	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.59	72	88288	58	3	47	8	72
ASE_00089	-	0.56	0.53	0.60	42	31305	32	2	26	4	37
ASE_00090	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.51	55	55503	57	4	49	4	46
ASE_00092	RNaseP_bact_a links to Rfam database...	0.73	0.73	0.73	82	63433	36	4	27	5	31
ASE_00096	RNaseP_bact_a links to Rfam database...	0.57	0.56	0.58	64	63436	47	4	42	1	51
ASE_00099	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	75	64508	42	2	35	5	45
ASE_00100	RNaseP_nuc links to Rfam database...	0.17	0.18	0.16	14	82128	125	10	63	52	62
ASE_00104	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.58	61	64155	49	3	42	4	58
ASE_00105	RNaseP_bact_a links to Rfam database...	0.31	0.31	0.31	34	64151	81	9	67	5	77
ASE_00107	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.69	80	73037	39	1	35	3	47
ASE_00108	RNaseP_nuc links to Rfam database...	0.55	0.57	0.52	36	46902	66	6	27	33	27
ASE_00111	RNaseP_nuc links to Rfam database...	0.27	0.33	0.21	19	49997	81	31	39	11	38
ASE_00112	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.61	70	75352	50	11	33	6	46
ASE_00115	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	63	54514	45	4	34	7	38
ASE_00116	RNaseP_arch links to Rfam database...	0.25	0.26	0.25	17	31557	55	10	42	3	49
ASE_00118	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.55	56	60625	52	3	42	7	46
ASE_00119	RNaseP_bact_a links to Rfam database...	0.71	0.72	0.70	78	62723	36	4	30	2	30
ASE_00120	RNaseP_arch links to Rfam database...	0.48	0.49	0.47	46	46874	51	7	44	0	48
ASE_00121	RNaseP_arch links to Rfam database...	0.31	0.33	0.31	30	45052	70	9	59	2	62
ASE_00122	RNaseP_bact_a links to Rfam database...	0.19	0.19	0.19	17	43274	75	2	72	1	71
ASE_00123	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	46	38425	37	2	30	5	39
ASE_00125	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.64	55	39254	36	5	26	5	33
ASE_00126	RNaseP_bact_a links to Rfam database...	0.78	0.80	0.76	66	40383	28	4	17	7	16
ASE_00128	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.70	69	53203	37	3	26	8	31
ASE_00129	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.75	82	62726	30	3	24	3	29
ASE_00131	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.61	43	39270	37	1	26	10	42
ASE_00132	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.47	45	50308	52	6	44	2	50
ASE_00134	RNaseP_bact_a links to Rfam database...	0.34	0.34	0.35	32	50311	65	4	56	5	63
ASE_00135	RNaseP_bact_a links to Rfam database...	0.45	0.45	0.45	49	63081	66	9	51	6	60
ASE_00136	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	47	48118	49	1	39	9	45
ASE_00137	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	54	48423	45	3	36	6	44
ASE_00138	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	44	40394	32	0	32	0	37
ASE_00139	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	70	54194	27	1	20	6	34
ASE_00140	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	66	70765	45	6	39	0	59
ASE_00142	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.50	59	67044	60	7	51	2	63
ASE_00145	RNaseP_arch links to Rfam database...	0.46	0.46	0.46	51	70015	66	7	52	7	60
ASE_00146	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.60	66	70766	50	1	43	6	58
ASE_00151	RNaseP_bact_a links to Rfam database...	0.27	0.27	0.28	26	51911	66	11	55	0	72
ASE_00153	RNaseP_nuc links to Rfam database...	0.67	0.68	0.66	50	57554	66	2	24	40	23
ASE_00154	RNaseP_arch links to Rfam database...	0.63	0.64	0.64	68	65234	42	4	35	3	39
ASE_00163	RNaseP_bact_a links to Rfam database...	0.39	0.39	0.39	36	53209	65	6	50	9	57
ASE_00165	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.68	65	52879	32	5	26	1	36
ASE_00168	RNaseP_nuc links to Rfam database...	0.16	0.20	0.13	13	60628	105	25	60	20	51
ASE_00169	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	71	57189	35	5	26	4	36
ASE_00170	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.69	61	48739	35	2	26	7	32
ASE_00171	RNaseP_bact_a links to Rfam database...	0.66	0.67	0.66	63	48420	33	5	28	0	31
ASE_00172	RNaseP_bact_a links to Rfam database...	0.62	0.63	0.60	67	58885	44	5	39	0	39
ASE_00174	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.52	56	60967	54	6	46	2	53
ASE_00175	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.67	68	59929	40	3	31	6	39
ASE_00176	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	58	59931	45	4	38	3	52
ASE_00179	RNaseP_bact_a links to Rfam database...	0.66	0.68	0.64	57	44164	32	7	25	0	27
ASE_00180	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.65	64	51262	39	3	31	5	36
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.55	0.54	58	57523	53	4	45	4	48
ASE_00182	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.49	64	84125	66	4	62	0	72
ASE_00183	RNaseP_bact_a links to Rfam database...	0.73	0.73	0.73	82	61313	35	3	27	5	31
ASE_00184	RNaseP_bact_a links to Rfam database...	0.62	0.64	0.61	65	54509	41	10	31	0	37
ASE_00185	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.71	85	73416	38	7	28	3	43
ASE_00186	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.78	97	78878	34	3	25	6	35
ASE_00187	RNaseP_arch links to Rfam database...	0.44	0.44	0.44	51	68520	69	8	56	5	64
ASE_00189	RNaseP_bact_b links to Rfam database...	0.58	0.57	0.60	58	63093	46	9	30	7	44
ASE_00190	RNaseP_bact_b links to Rfam database...	0.57	0.56	0.58	50	45365	42	7	29	6	40
ASE_00192	RNaseP_bact_b links to Rfam database...	0.28	0.26	0.30	35	84548	91	6	77	8	98
ASE_00194	RNaseP_bact_b links to Rfam database...	0.56	0.55	0.56	66	73418	56	13	39	4	53
ASE_00195	-	0.59	0.58	0.60	77	86191	57	3	49	5	56
ASE_00196	RNaseP_arch links to Rfam database...	0.74	0.73	0.75	55	31553	22	2	16	4	20
ASE_00197	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.71	95	89120	42	3	35	4	50
ASE_00198	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	66	52549	41	6	29	6	36
ASE_00203	RNaseP_bact_a links to Rfam database...	0.76	0.75	0.77	72	46571	25	4	18	3	24
ASE_00204	RNaseP_bact_b links to Rfam database...	0.63	0.61	0.65	68	67792	41	7	29	5	44
ASE_00205	RNaseP_arch links to Rfam database...	0.46	0.47	0.46	42	45964	54	8	42	4	48
ASE_00209	RNaseP_arch links to Rfam database...	0.40	0.39	0.41	34	42989	48	5	43	0	54
ASE_00210	RNaseP_arch links to Rfam database...	0.47	0.48	0.47	31	27195	36	7	28	1	34
ASE_00213	RNaseP_arch links to Rfam database...	0.73	0.73	0.73	48	27195	19	6	12	1	18
ASE_00214	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.74	73	56182	32	4	21	7	30
ASE_00215	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	38	48425	53	2	51	0	61
ASE_00216	RNaseP_bact_a links to Rfam database...	0.61	0.62	0.59	51	39254	36	7	28	1	31
ASE_00217	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	35	40394	48	3	38	7	55
ASE_00221	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.55	61	64510	53	1	48	4	56
ASE_00227	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	58	78874	72	11	60	1	75
ASE_00228	RNaseP_bact_a links to Rfam database...	0.60	0.63	0.58	54	46878	39	14	25	0	32
ASE_00229	RNaseP_bact_a links to Rfam database...	0.73	0.72	0.73	63	42400	28	5	18	5	24
ASE_00231	RNaseP_bact_a links to Rfam database...	0.65	0.67	0.64	64	47795	36	5	31	0	32
ASE_00232	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	52	38419	33	4	28	1	32
ASE_00234	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	44	75350	76	7	65	4	85
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45663	101	25	65	11	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.42	0.42	0.42	48	64146	70	6	61	3	66
ASE_00240	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.67	60	46575	37	3	27	7	33
ASE_00241	RNaseP_bact_a links to Rfam database...	0.51	0.53	0.49	46	43862	48	10	38	0	41
ASE_00242	RNaseP_bact_a links to Rfam database...	0.46	0.46	0.47	51	60966	60	5	53	2	61
ASE_00246	RNaseP_nuc links to Rfam database...	0.29	0.34	0.25	23	48114	75	26	42	7	44
ASE_00247	RNaseP_nuc links to Rfam database...	0.17	0.19	0.15	12	54205	97	19	49	29	52
ASE_00248	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.62	67	62373	45	1	40	4	47
ASE_00250	RNaseP_bact_a links to Rfam database...	0.82	0.82	0.83	107	78874	25	4	18	3	24
ASE_00254	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.42	33	36777	50	4	42	4	49
ASE_00255	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.71	85	74571	41	3	32	6	45
ASE_00257	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	54	50945	50	4	37	9	43
ASE_00259	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.44	48	73043	65	9	53	3	73
ASE_00263	RNaseP_bact_a links to Rfam database...	0.76	0.77	0.76	92	70379	31	7	22	2	28
ASE_00264	RNaseP_nuc links to Rfam database...	0.81	0.75	0.87	75	49055	21	0	11	10	25
ASE_00267	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	50	45071	37	4	25	8	38
ASE_00270	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.76	91	72271	35	1	27	7	37
ASE_00274	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.50	51	55510	50	10	40	0	52
ASE_00277	RNaseP_bact_a links to Rfam database...	0.46	0.47	0.44	43	48108	55	10	44	1	48
ASE_00279	RNaseP_bact_a links to Rfam database...	0.73	0.72	0.74	73	53202	33	3	23	7	28
ASE_00280	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	65	51907	39	4	27	8	33
ASE_00281	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	39	44462	51	5	45	1	49
ASE_00282	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	56	77690	70	4	65	1	71
ASE_00283	RNaseP_bact_a links to Rfam database...	0.81	0.79	0.84	84	61676	25	2	14	9	23
ASE_00284	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.51	54	58206	58	6	45	7	54
ASE_00285	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.73	80	68896	38	2	28	8	42
ASE_00286	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	45	46575	50	2	43	5	47
ASE_00287	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.76	71	54852	32	2	21	9	32
ASE_00288	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	40	45968	49	5	43	1	53
ASE_00289	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.69	96	100886	48	4	39	5	61
ASE_00291	-	0.37	0.36	0.39	34	48429	54	9	44	1	60
ASE_00292	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.66	83	81685	47	1	41	5	55
ASE_00294	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.68	104	114329	52	0	48	4	67
ASE_00295	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	59	73800	64	5	56	3	72
ASE_00297	RNaseP_bact_a links to Rfam database...	0.66	0.66	0.65	65	52875	38	7	28	3	33
ASE_00298	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.48	51	67422	60	9	46	5	62
ASE_00299	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.58	59	49354	47	8	34	5	41
ASE_00313	RNaseP_nuc links to Rfam database...	0.72	0.72	0.72	64	62392	45	6	19	20	25
ASE_00318	RNaseP_bact_b links to Rfam database...	0.62	0.62	0.61	73	80081	50	14	32	4	45
ASE_00327	RNaseP_nuc links to Rfam database...	0.81	0.80	0.83	71	57205	35	1	14	20	18
ASE_00328	RNaseP_bact_b links to Rfam database...	0.41	0.41	0.41	46	72659	75	5	61	9	66
ASE_00330	RNaseP_nuc links to Rfam database...	0.70	0.71	0.70	64	56188	50	4	24	22	26
ASE_00332	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.54	71	81678	63	2	59	2	67
ASE_00335	RNaseP_bact_b links to Rfam database...	0.42	0.42	0.42	49	75348	79	12	57	10	67
ASE_00337	RNaseP_nuc links to Rfam database...	0.46	0.49	0.43	35	39259	57	11	35	11	36
ASE_00338	RNaseP_nuc links to Rfam database...	0.48	0.47	0.50	46	66338	63	4	42	17	52
ASE_00339	RNaseP_bact_a links to Rfam database...	0.52	0.52	0.52	62	80081	69	6	51	12	57
ASE_00340	RNaseP_bact_a links to Rfam database...	0.76	0.75	0.76	64	45972	29	6	14	9	21
ASE_00342	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	59	62377	48	2	43	3	56
ASE_00343	RNaseP_bact_a links to Rfam database...	0.55	0.57	0.53	64	83315	69	10	47	12	49
ASE_00346	RNaseP_arch links to Rfam database...	0.42	0.41	0.42	40	48110	59	4	51	4	57
ASE_00353	RNaseP_bact_a links to Rfam database...	0.50	0.51	0.49	55	57857	59	11	47	1	52
ASE_00359	RNaseP_arch links to Rfam database...	0.45	0.46	0.44	37	42693	55	3	45	7	43
ASE_00360	RNaseP_arch links to Rfam database...	0.31	0.32	0.31	21	29335	53	11	36	6	44
ASE_00361	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.34	41	75346	82	10	69	3	86
ASE_00362	RNaseP_bact_a links to Rfam database...	0.57	0.57	0.57	52	48114	46	4	35	7	39
ASE_00363	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.42	39	51267	60	2	52	6	55
ASE_00364	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.55	57	54181	51	6	41	4	48
ASE_00366	RNaseP_bact_a links to Rfam database...	0.51	0.54	0.47	53	58541	60	10	49	1	45
ASE_00367	RNaseP_bact_a links to Rfam database...	0.31	0.31	0.30	27	42981	68	7	56	5	59
ASE_00369	RNaseP_bact_a links to Rfam database...	0.57	0.58	0.56	62	55835	48	3	45	0	45
ASE_00370	RNaseP_bact_a links to Rfam database...	0.62	0.63	0.61	53	41818	34	1	33	0	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.70	69	51904	34	5	25	4	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.65	0.66	0.64	58	44759	33	7	26	0	30
ASE_00375	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.48	51	60271	59	4	52	3	59
ASE_00376	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.52	54	56850	52	4	45	3	51
ASE_00377	RNaseP_bact_a links to Rfam database...	0.81	0.80	0.81	86	57524	26	3	17	6	21
ASE_00379	RNaseP_bact_a links to Rfam database...	0.61	0.61	0.61	54	45968	42	4	30	8	35
ASE_00380	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.49	46	54852	54	2	46	6	53
ASE_00382	RNaseP_bact_a links to Rfam database...	0.40	0.40	0.40	34	41821	53	6	44	3	50
ASE_00383	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	60	54517	43	3	35	5	45
ASE_00384	RNaseP_bact_a links to Rfam database...	0.68	0.70	0.67	64	48420	37	5	27	5	28
ASE_00385	RNaseP_bact_a links to Rfam database...	0.42	0.43	0.40	35	41818	53	6	46	1	46
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.52	54	50300	54	4	45	5	42
ASE_00387	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.63	64	55844	43	1	36	6	40
ASE_00388	RNaseP_bact_a links to Rfam database...	0.61	0.63	0.60	56	45659	40	2	36	2	33
ASE_00390	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.49	39	42116	50	6	34	10	46
ASE_00393	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.54	49	47804	48	1	41	6	44
ASE_00394	RNaseP_bact_a links to Rfam database...	0.70	0.71	0.69	66	46875	32	3	27	2	27
ASE_00395	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.56	46	41534	43	2	34	7	38
ASE_00396	RNaseP_bact_a links to Rfam database...	0.35	0.36	0.34	30	41529	62	11	46	5	53
ASE_00397	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.50	53	54510	52	7	45	0	52
ASE_00398	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.64	65	55844	40	2	34	4	39
ASE_00400	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.56	59	57865	47	10	36	1	47
ASE_00401	RNaseP_bact_a links to Rfam database...	0.53	0.56	0.51	70	76892	66	13	53	0	56
ASE_00402	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	36	42403	52	5	42	5	49
ASE_00403	RNaseP_bact_a links to Rfam database...	0.39	0.39	0.40	42	55839	64	3	61	0	65
ASE_00404	RNaseP_bact_a links to Rfam database...	0.35	0.35	0.36	30	42987	62	1	53	8	55
ASE_00406	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.73	66	48737	27	8	17	2	28
ASE_00408	-	0.48	0.48	0.49	34	32315	41	2	34	5	37
ASE_00409	-	0.47	0.48	0.46	40	40954	47	7	40	0	43
ASE_00411	RNaseP_bact_a links to Rfam database...	0.30	0.30	0.31	27	49367	66	6	55	5	62
ASE_00412	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	47	58210	57	9	45	3	58
ASE_00413	RNaseP_bact_a links to Rfam database...	0.56	0.59	0.54	48	44462	44	11	30	3	33
ASE_00414	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.31	27	46273	67	4	56	7	68
ASE_00415	RNaseP_bact_a links to Rfam database...	0.48	0.50	0.47	51	54837	64	4	54	6	52
ASE_00416	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.58	68	77303	56	9	41	6	59
ASE_00417	RNaseP_arch links to Rfam database...	0.44	0.45	0.43	45	54510	64	9	51	4	55
ASE_00418	RNaseP_arch links to Rfam database...	0.33	0.33	0.32	25	38704	54	5	47	2	50
ASE_00419	RNaseP_bact_a links to Rfam database...	0.73	0.73	0.74	75	54844	31	5	22	4	28
ASE_00422	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.48	46	46876	55	5	44	6	48
ASE_00423	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.60	63	56848	45	7	35	3	46
ASE_00426	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	48	60967	61	6	54	1	60
ASE_00428	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	82	76519	42	3	32	7	43
ASE_00429	-	0.39	0.38	0.40	25	28141	45	3	34	8	41
ASE_00430	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	60	46874	42	7	30	5	37
ASE_00431	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	52	46269	44	9	30	5	43
ASE_00434	RNaseP_bact_b links to Rfam database...	0.56	0.56	0.56	62	68154	57	10	39	8	48
ASE_00437	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	57	79278	66	4	62	0	78
ASE_00438	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	44	65960	62	6	56	0	72
ASE_00441	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	83	64158	33	4	16	13	29
ASE_00447	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.64	68	60272	43	2	36	5	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.52	56	64154	61	7	44	10	56
ASE_00451	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.64	74	70761	44	1	40	3	51
CRW_00016	Intron_gpI links to Rfam database...	0.60	0.58	0.63	70	77309	55	5	37	13	50
CRW_00608	-	0.67	0.67	0.68	53	35700	32	6	19	7	26
CRW_00610	Intron_gpI links to Rfam database...	0.49	0.51	0.48	41	36230	44	9	35	0	40
CRW_00611	-	0.84	0.81	0.86	61	31304	13	4	6	3	14
CRW_00613	Intron_gpI links to Rfam database...	0.66	0.62	0.71	48	34912	28	1	19	8	30
CRW_00618	Intron_gpI links to Rfam database...	0.07	0.08	0.07	5	56205	92	15	55	22	56
CRW_00632	-	0.55	0.55	0.55	71	82900	63	4	53	6	57
CRW_00633	Intron_gpI links to Rfam database...	0.40	0.42	0.39	44	63434	70	10	58	2	62
CRW_00634	Intron_gpI links to Rfam database...	0.50	0.53	0.48	50	64516	59	11	43	5	44
CRW_00641	-	0.71	0.72	0.70	55	39824	35	6	18	11	21
CRW_00642	-	0.61	0.65	0.58	42	47205	54	8	23	23	23
CRW_00645	-	0.77	0.82	0.72	55	35435	31	8	13	10	12
CRW_00646	-	0.84	0.84	0.83	54	34915	29	0	11	18	10
CRW_00653	-	0.70	0.72	0.68	97	94687	49	12	34	3	37
CRW_00654	-	0.70	0.69	0.72	85	78092	38	4	29	5	39
CRW_00655	-	0.80	0.79	0.82	98	89133	29	4	18	7	26
CRW_00658	-	0.46	0.48	0.45	49	74581	61	24	37	0	53
CRW_00659	-	0.38	0.44	0.33	27	32304	61	15	39	7	34
CRW_00660	-	0.52	0.53	0.52	32	22093	33	7	23	3	28
CRW_00661	-	0.19	0.22	0.17	11	24245	57	11	43	3	40
CRW_00662	-	0.16	0.17	0.16	11	28610	64	5	54	5	54
CRW_00663	-	0.07	0.08	0.07	5	26035	74	9	57	8	56
CRW_00664	-	0.21	0.24	0.19	19	53529	80	18	62	0	59
CRW_00665	-	0.00	0.00	0.00	0	23597	60	10	46	4	48
CRW_00669	-	0.50	0.52	0.49	62	97334	77	14	51	12	57
CRW_00670	Intron_gpI links to Rfam database...	0.62	0.61	0.63	73	70009	45	9	34	2	47
CRW_00671	Intron_gpI links to Rfam database...	0.65	0.63	0.67	74	62725	43	1	35	7	43
CRW_00672	Intron_gpI links to Rfam database...	0.74	0.75	0.74	83	72278	38	6	23	9	28
CRW_00674	Intron_gpI links to Rfam database...	0.60	0.61	0.59	76	83308	55	10	42	3	48
CRW_00676	Intron_gpI links to Rfam database...	0.56	0.58	0.54	67	93403	71	15	43	13	48
CRW_00677	-	0.58	0.61	0.56	64	71895	59	13	38	8	41
CRW_00679	-	0.24	0.25	0.23	27	76517	99	17	75	7	80
CRW_00687	-	0.69	0.74	0.64	49	28603	32	8	20	4	17
CRW_00688	-	0.75	0.77	0.73	44	21885	17	7	9	1	13
CRW_00689	-	0.67	0.71	0.63	55	33583	34	11	21	2	22
CRW_00690	-	0.72	0.72	0.72	50	33342	27	5	14	8	19
CRW_00691	-	0.53	0.57	0.50	38	27185	40	5	33	2	29
CRW_00692	Intron_gpI links to Rfam database...	0.34	0.37	0.32	33	68532	80	22	48	10	57
CRW_00693	-	0.56	0.59	0.54	72	89119	72	11	51	10	50
CRW_00694	-	0.65	0.66	0.64	81	85779	51	14	31	6	41
CRW_00703	-	0.51	0.56	0.47	37	40392	48	15	26	7	29
CRW_00715	-	0.75	0.73	0.78	76	69280	25	4	18	3	28
CRW_00721	-	0.52	0.60	0.45	41	58562	65	22	28	15	27
PDB_00078	-	0.64	0.61	0.67	70	49666	34	7	27	0	45
PDB_00278	-	0.41	0.40	0.41	29	24906	41	5	36	0	43
PDB_00403	-	0.62	0.63	0.61	96	124592	77	15	47	15	57
PDB_00423	-	0.19	0.19	0.19	14	26723	59	7	52	0	60
PDB_00701	-	0.47	0.47	0.48	51	45344	57	5	51	1	58
PDB_00747	-	0.65	0.60	0.72	48	24464	19	0	19	0	32
PDB_00827	Intron_gpI links to Rfam database...	0.59	0.53	0.65	43	26962	24	3	20	1	38
PDB_00917	-	0.56	0.54	0.58	51	35157	43	3	34	6	44
PDB_00919	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.55	50	44162	45	2	39	4	53
PDB_01129	-	0.27	0.28	0.26	20	35434	62	16	41	5	51
PDB_01157	-	0.23	0.22	0.23	22	49992	72	12	60	0	76
RFA_00598	Telomerase-vert links to Rfam database...	0.27	0.28	0.26	28	84559	99	13	66	20	73
TMR_00007	tmRNA links to Rfam database...	0.38	0.37	0.39	40	61674	67	9	53	5	68
TMR_00008	tmRNA links to Rfam database...	0.34	0.35	0.34	37	65958	80	11	60	9	69
TMR_00010	tmRNA links to Rfam database...	0.29	0.30	0.28	29	57866	75	14	61	0	67
TMR_00012	tmRNA links to Rfam database...	0.34	0.37	0.31	30	64523	84	25	42	17	51
TMR_00014	tmRNA links to Rfam database...	0.57	0.56	0.57	62	68526	57	17	30	10	48
TMR_00017	tmRNA links to Rfam database...	0.36	0.38	0.35	39	67049	79	17	56	6	63
TMR_00018	tmRNA links to Rfam database...	0.12	0.13	0.12	12	64521	93	11	76	6	80
TMR_00028	tmRNA links to Rfam database...	0.30	0.33	0.28	32	62722	84	14	67	3	65
TMR_00030	tmRNA links to Rfam database...	0.17	0.19	0.16	21	75726	111	17	91	3	90
TMR_00034	tmRNA links to Rfam database...	0.64	0.64	0.64	70	59921	47	10	30	7	40
TMR_00035	tmRNA links to Rfam database...	0.30	0.33	0.28	32	67782	89	12	70	7	66
TMR_00038	tmRNA links to Rfam database...	0.23	0.24	0.22	26	71136	95	11	80	4	84
TMR_00042	tmRNA links to Rfam database...	0.24	0.24	0.24	24	62735	79	9	67	3	74
TMR_00046	tmRNA links to Rfam database...	0.54	0.55	0.52	53	62734	54	12	36	6	43
TMR_00047	tmRNA links to Rfam database...	0.25	0.30	0.22	17	48437	79	18	44	17	40
TMR_00048	tmRNA links to Rfam database...	0.22	0.24	0.20	23	64866	96	16	75	5	72
TMR_00049	tmRNA links to Rfam database...	0.51	0.53	0.49	46	63097	59	9	38	12	41
TMR_00051	tmRNA links to Rfam database...	0.66	0.65	0.68	61	65613	45	7	22	16	33
TMR_00055	tmRNA links to Rfam database...	0.38	0.38	0.39	43	78894	78	8	58	12	71
TMR_00061	tmRNA links to Rfam database...	0.22	0.23	0.21	23	59574	95	11	77	7	76
TMR_00062	tmRNA links to Rfam database...	0.29	0.32	0.28	33	78486	96	19	68	9	71
TMR_00064	tmRNA links to Rfam database...	0.39	0.41	0.37	42	76913	82	21	52	9	61
TMR_00065	tmRNA links to Rfam database...	0.54	0.58	0.52	61	76518	59	16	41	2	45
TMR_00067	tmRNA links to Rfam database...	0.17	0.18	0.16	20	82091	106	14	90	2	94
TMR_00073	tmRNA links to Rfam database...	0.43	0.43	0.43	50	65588	65	5	60	0	67
TMR_00076	tmRNA links to Rfam database...	0.32	0.34	0.31	34	70766	82	15	61	6	66
TMR_00080	tmRNA links to Rfam database...	0.33	0.33	0.32	32	70401	67	19	48	0	64
TMR_00081	tmRNA links to Rfam database...	0.47	0.45	0.48	48	67061	53	12	40	1	58
TMR_00082	tmRNA links to Rfam database...	0.41	0.42	0.40	40	67795	65	19	42	4	56
TMR_00083	tmRNA links to Rfam database...	0.34	0.34	0.34	36	68160	78	14	55	9	69
TMR_00092	tmRNA links to Rfam database...	0.40	0.42	0.38	42	67417	72	17	52	3	59
TMR_00093	tmRNA links to Rfam database...	0.29	0.31	0.27	32	64141	88	16	72	0	70
TMR_00096	tmRNA links to Rfam database...	0.44	0.46	0.43	46	64872	67	18	44	5	54
TMR_00101	tmRNA links to Rfam database...	0.42	0.43	0.42	46	64152	67	7	56	4	61
TMR_00102	tmRNA links to Rfam database...	0.30	0.33	0.28	33	64142	88	20	66	2	68
TMR_00103	tmRNA links to Rfam database...	0.49	0.50	0.49	54	64150	58	12	45	1	54
TMR_00104	-	0.08	0.10	0.07	7	66700	94	34	54	6	63
TMR_00109	tmRNA links to Rfam database...	0.36	0.36	0.35	44	88286	83	26	54	3	78
TMR_00116	tmRNA links to Rfam database...	0.71	0.68	0.73	71	64883	41	3	23	15	33
TMR_00117	tmRNA links to Rfam database...	0.61	0.62	0.59	73	80077	59	8	42	9	45
TMR_00118	tmRNA links to Rfam database...	0.37	0.37	0.37	44	81286	83	3	73	7	76
TMR_00119	tmRNA links to Rfam database...	0.54	0.55	0.54	57	71904	57	9	40	8	47
TMR_00123	tmRNA links to Rfam database...	0.46	0.47	0.46	47	66327	57	11	45	1	54
TMR_00124	tmRNA links to Rfam database...	0.35	0.38	0.33	37	70388	89	13	62	14	61
TMR_00125	tmRNA links to Rfam database...	0.26	0.27	0.25	27	64152	86	17	65	4	72
TMR_00127	tmRNA links to Rfam database...	0.23	0.25	0.22	24	62728	86	24	59	3	73
TMR_00128	tmRNA links to Rfam database...	0.46	0.49	0.44	47	60968	62	21	39	2	49
TMR_00131	tmRNA links to Rfam database...	0.27	0.27	0.28	27	64882	78	13	58	7	72
TMR_00135	tmRNA links to Rfam database...	0.51	0.49	0.53	49	62742	53	10	34	9	50
TMR_00136	tmRNA links to Rfam database...	0.19	0.21	0.18	21	74572	102	25	73	4	80
TMR_00137	tmRNA links to Rfam database...	0.16	0.18	0.15	16	60971	92	19	69	4	73
TMR_00139	tmRNA links to Rfam database...	0.56	0.60	0.51	55	62021	61	19	33	9	36
TMR_00140	tmRNA links to Rfam database...	0.49	0.50	0.49	50	73817	69	8	45	16	50
TMR_00142	tmRNA links to Rfam database...	0.50	0.52	0.49	53	70767	66	16	40	10	49
TMR_00143	tmRNA links to Rfam database...	0.44	0.46	0.44	47	64512	70	10	51	9	56
TMR_00144	tmRNA links to Rfam database...	0.25	0.26	0.23	27	74189	92	16	73	3	76
TMR_00146	tmRNA links to Rfam database...	0.87	0.88	0.86	37	32088	34	2	4	28	5
TMR_00150	tmRNA links to Rfam database...	0.71	0.71	0.71	30	43029	53	2	10	41	12
TMR_00152	tmRNA links to Rfam database...	0.25	0.26	0.24	30	81283	104	12	81	11	85
TMR_00155	tmRNA links to Rfam database...	0.34	0.33	0.35	34	61680	70	4	58	8	70
TMR_00156	tmRNA links to Rfam database...	0.27	0.28	0.25	27	60272	84	14	65	5	70
TMR_00158	tmRNA links to Rfam database...	0.44	0.43	0.44	43	60628	60	9	46	5	56
TMR_00159	tmRNA links to Rfam database...	0.34	0.36	0.32	33	62025	81	18	52	11	59
TMR_00160	tmRNA links to Rfam database...	0.35	0.37	0.34	35	64517	76	14	54	8	60
TMR_00164	tmRNA links to Rfam database...	0.39	0.39	0.39	41	66690	72	10	54	8	65
TMR_00165	tmRNA links to Rfam database...	0.29	0.31	0.28	30	61667	90	12	67	11	67
TMR_00166	tmRNA links to Rfam database...	0.20	0.20	0.20	20	61676	86	11	69	6	81
TMR_00168	tmRNA links to Rfam database...	0.68	0.66	0.71	75	60970	35	3	27	5	39
TMR_00173	tmRNA links to Rfam database...	0.31	0.36	0.27	15	42139	68	18	23	27	27
TMR_00179	tmRNA links to Rfam database...	0.53	0.55	0.50	54	67054	64	11	42	11	44
TMR_00180	tmRNA links to Rfam database...	0.64	0.65	0.63	64	67060	50	9	28	13	35
TMR_00182	tmRNA links to Rfam database...	0.14	0.15	0.14	15	66323	96	12	80	4	87
TMR_00183	tmRNA links to Rfam database...	0.13	0.14	0.12	14	63077	105	8	91	6	89
TMR_00184	tmRNA links to Rfam database...	0.51	0.51	0.51	52	63088	58	5	45	8	50
TMR_00193	tmRNA links to Rfam database...	0.41	0.44	0.39	35	59250	61	16	39	6	45
TMR_00194	tmRNA links to Rfam database...	0.45	0.46	0.45	43	62739	56	17	36	3	50
TMR_00196	tmRNA links to Rfam database...	0.54	0.54	0.55	52	60980	53	6	37	10	45
TMR_00199	tmRNA links to Rfam database...	0.57	0.61	0.54	56	62732	54	13	34	7	36
TMR_00200	-	0.57	0.57	0.57	43	41540	44	3	30	11	32
TMR_00204	tmRNA links to Rfam database...	0.33	0.34	0.33	33	60277	78	14	54	10	64
TMR_00207	tmRNA links to Rfam database...	0.40	0.41	0.40	42	72286	69	9	53	7	61
TMR_00223	tmRNA links to Rfam database...	0.25	0.26	0.23	25	64154	86	24	58	4	70
TMR_00224	tmRNA links to Rfam database...	0.40	0.43	0.38	43	64868	70	9	60	1	58
TMR_00226	tmRNA links to Rfam database...	0.34	0.36	0.32	38	69631	83	16	66	1	67
TMR_00227	tmRNA links to Rfam database...	0.50	0.52	0.47	53	70013	62	9	50	3	48
TMR_00228	tmRNA links to Rfam database...	0.29	0.31	0.27	34	88283	101	26	67	8	74
TMR_00234	tmRNA links to Rfam database...	0.25	0.26	0.23	27	58880	93	15	74	4	75
TMR_00238	tmRNA links to Rfam database...	0.37	0.41	0.34	41	84547	89	16	62	11	60
TMR_00239	tmRNA links to Rfam database...	0.45	0.47	0.43	45	61671	61	11	49	1	51
TMR_00240	tmRNA links to Rfam database...	0.21	0.24	0.19	20	63082	91	23	65	3	65
TMR_00246	-	0.57	0.59	0.56	20	78174	114	3	13	98	14
TMR_00248	tmRNA links to Rfam database...	0.28	0.32	0.25	12	54237	88	13	23	52	26
TMR_00257	tmRNA links to Rfam database...	0.12	0.12	0.13	12	67066	89	7	76	6	86
TMR_00259	tmRNA links to Rfam database...	0.57	0.58	0.56	60	67789	50	16	31	3	43
TMR_00261	tmRNA links to Rfam database...	0.55	0.58	0.52	59	66682	58	20	34	4	42
TMR_00262	tmRNA links to Rfam database...	0.54	0.57	0.51	59	74189	57	20	37	0	45
TMR_00271	tmRNA links to Rfam database...	0.38	0.40	0.37	36	64163	71	13	49	9	55
TMR_00274	tmRNA links to Rfam database...	0.29	0.30	0.28	32	66682	87	13	68	6	73
TMR_00278	tmRNA links to Rfam database...	0.43	0.45	0.42	46	67786	74	7	57	10	56
TMR_00279	tmRNA links to Rfam database...	0.48	0.49	0.46	46	68907	63	12	41	10	48
TMR_00280	tmRNA links to Rfam database...	0.50	0.53	0.48	54	65953	72	9	50	13	47
TMR_00283	tmRNA links to Rfam database...	0.47	0.47	0.47	45	65245	59	6	45	8	51
TMR_00289	tmRNA links to Rfam database...	0.56	0.58	0.55	57	67057	59	9	38	12	41
TMR_00290	tmRNA links to Rfam database...	0.19	0.21	0.18	19	64158	92	15	69	8	73
TMR_00296	tmRNA links to Rfam database...	0.32	0.34	0.31	33	68900	82	11	62	9	65
TMR_00298	tmRNA links to Rfam database...	0.47	0.50	0.44	51	68149	69	16	49	4	50
TMR_00300	tmRNA links to Rfam database...	0.53	0.54	0.52	61	70382	67	12	45	10	51
TMR_00301	tmRNA links to Rfam database...	0.39	0.42	0.37	40	82106	74	21	48	5	56
TMR_00302	tmRNA links to Rfam database...	0.24	0.28	0.21	26	77295	104	32	68	4	68
TMR_00305	tmRNA links to Rfam database...	0.69	0.66	0.73	67	60983	34	5	20	9	35
TMR_00306	tmRNA links to Rfam database...	0.21	0.22	0.21	23	64152	86	14	72	0	83
TMR_00310	tmRNA links to Rfam database...	0.52	0.52	0.52	51	63805	55	6	41	8	47
TMR_00317	tmRNA links to Rfam database...	0.54	0.56	0.52	57	68156	55	14	38	3	45
TMR_00331	tmRNA links to Rfam database...	0.30	0.34	0.26	28	66687	90	17	63	10	54
TMR_00332	tmRNA links to Rfam database...	0.48	0.47	0.49	47	67065	53	12	37	4	52
TMR_00334	tmRNA links to Rfam database...	0.30	0.31	0.30	31	66691	76	10	63	3	70
TMR_00340	tmRNA links to Rfam database...	0.37	0.38	0.36	31	64175	79	5	50	24	50
TMR_00341	tmRNA links to Rfam database...	0.21	0.23	0.19	21	63080	97	24	65	8	71
TMR_00343	tmRNA links to Rfam database...	0.48	0.47	0.49	49	64881	59	4	46	9	56
TMR_00345	tmRNA links to Rfam database...	0.50	0.49	0.51	51	63803	55	14	35	6	53
TMR_00346	tmRNA links to Rfam database...	0.49	0.52	0.46	49	64155	59	15	42	2	45
TMR_00348	tmRNA links to Rfam database...	0.14	0.14	0.15	14	77325	100	18	64	18	85
TMR_00352	tmRNA links to Rfam database...	0.47	0.52	0.43	39	95175	94	20	32	42	36
TMR_00353	tmRNA links to Rfam database...	0.47	0.50	0.44	53	84135	76	22	45	9	52
TMR_00357	tmRNA links to Rfam database...	0.38	0.40	0.37	37	82927	79	21	43	15	55
TMR_00358	tmRNA links to Rfam database...	0.25	0.26	0.25	26	74973	96	19	60	17	73
TMR_00372	tmRNA links to Rfam database...	0.53	0.56	0.50	54	70392	67	13	41	13	42
TMR_00374	tmRNA links to Rfam database...	0.23	0.26	0.21	24	81693	99	23	70	6	68
TMR_00378	tmRNA links to Rfam database...	0.13	0.14	0.13	14	67784	109	18	80	11	83
TMR_00383	tmRNA links to Rfam database...	0.21	0.22	0.21	22	66688	94	11	74	9	78
TMR_00384	tmRNA links to Rfam database...	0.39	0.40	0.39	43	65592	74	12	56	6	65
TMR_00393	tmRNA links to Rfam database...	0.42	0.47	0.37	25	53233	69	15	28	26	28
TMR_00395	tmRNA links to Rfam database...	0.52	0.50	0.53	55	64517	52	8	40	4	54
TMR_00398	tmRNA links to Rfam database...	0.67	0.65	0.69	69	65241	37	1	30	6	37
TMR_00399	tmRNA links to Rfam database...	0.17	0.18	0.15	17	64869	98	27	67	4	77
TMR_00404	tmRNA links to Rfam database...	0.29	0.32	0.27	29	67420	90	24	55	11	63
TMR_00408	tmRNA links to Rfam database...	0.60	0.64	0.57	56	65968	51	15	27	9	32
TMR_00409	tmRNA links to Rfam database...	0.65	0.74	0.57	34	68575	75	10	16	49	12
TMR_00411	tmRNA links to Rfam database...	0.64	0.64	0.64	56	60987	41	9	23	9	31
TMR_00415	tmRNA links to Rfam database...	0.39	0.40	0.39	40	67059	67	10	52	5	61
TMR_00419	tmRNA links to Rfam database...	0.41	0.41	0.41	46	81698	85	13	53	19	65
TMR_00422	tmRNA links to Rfam database...	0.50	0.52	0.48	48	67795	62	12	41	9	44
TMR_00423	tmRNA links to Rfam database...	0.31	0.36	0.27	26	63808	88	22	47	19	47
TMR_00427	tmRNA links to Rfam database...	0.31	0.31	0.31	30	67431	74	9	58	7	67
TMR_00429	tmRNA links to Rfam database...	0.28	0.28	0.28	31	74581	88	14	65	9	78
TMR_00430	tmRNA links to Rfam database...	0.26	0.27	0.25	29	82504	92	14	74	4	80
TMR_00431	tmRNA links to Rfam database...	0.64	0.65	0.62	36	51945	72	6	16	50	19
TMR_00432	tmRNA links to Rfam database...	0.24	0.26	0.23	27	79681	100	12	80	8	77
TMR_00433	tmRNA links to Rfam database...	0.32	0.33	0.31	35	80087	83	10	68	5	71
TMR_00439	tmRNA links to Rfam database...	0.38	0.41	0.36	41	68520	84	21	53	10	60
TMR_00441	tmRNA links to Rfam database...	0.17	0.19	0.16	16	62028	92	27	57	8	67
TMR_00443	tmRNA links to Rfam database...	0.45	0.45	0.45	47	67056	60	15	43	2	57
TMR_00448	tmRNA links to Rfam database...	0.55	0.55	0.55	51	62036	48	6	35	7	41
TMR_00451	tmRNA links to Rfam database...	0.17	0.19	0.16	17	63441	88	16	72	0	72
TMR_00457	tmRNA links to Rfam database...	0.39	0.40	0.38	41	78497	75	10	58	7	61
TMR_00458	tmRNA links to Rfam database...	0.36	0.37	0.37	34	63453	68	11	48	9	59
TMR_00460	tmRNA links to Rfam database...	0.51	0.53	0.49	56	79286	65	13	46	6	50
TMR_00465	tmRNA links to Rfam database...	0.23	0.26	0.22	24	64151	88	24	62	2	70
TMR_00469	tmRNA links to Rfam database...	0.48	0.51	0.46	51	64508	66	21	40	5	49
TMR_00472	tmRNA links to Rfam database...	0.59	0.58	0.60	56	64526	52	7	31	14	41
TMR_00478	tmRNA links to Rfam database...	0.23	0.24	0.22	24	71899	90	19	68	3	75
TMR_00498	tmRNA links to Rfam database...	0.53	0.54	0.52	53	68905	59	11	37	11	46
TMR_00499	tmRNA links to Rfam database...	0.20	0.21	0.18	21	64505	102	10	84	8	78
TMR_00501	tmRNA links to Rfam database...	0.40	0.41	0.40	38	62385	63	9	49	5	54
TMR_00502	tmRNA links to Rfam database...	0.33	0.37	0.31	34	75355	86	18	59	9	59
TMR_00503	tmRNA links to Rfam database...	0.39	0.40	0.39	44	67783	73	9	60	4	67
TMR_00519	tmRNA links to Rfam database...	0.20	0.21	0.19	20	63083	97	18	69	10	75
TMR_00520	tmRNA links to Rfam database...	0.33	0.35	0.32	35	63080	85	13	62	10	64
TMR_00522	tmRNA links to Rfam database...	0.46	0.47	0.45	46	63088	65	12	44	9	51
TMR_00528	tmRNA links to Rfam database...	0.34	0.34	0.34	33	63093	75	13	51	11	64
TMR_00540	tmRNA links to Rfam database...	0.24	0.24	0.24	25	73433	82	12	66	4	79
TMR_00541	tmRNA links to Rfam database...	0.35	0.35	0.34	37	61668	77	12	59	6	68
TMR_00544	tmRNA links to Rfam database...	0.52	0.53	0.50	57	89563	63	20	36	7	51
TMR_00547	tmRNA links to Rfam database...	0.58	0.57	0.60	57	65246	43	2	36	5	43
TMR_00553	tmRNA links to Rfam database...	0.45	0.46	0.45	37	48123	50	15	30	5	44
TMR_00559	tmRNA links to Rfam database...	0.35	0.35	0.35	35	62382	68	12	52	4	66
TMR_00560	tmRNA links to Rfam database...	0.41	0.42	0.41	41	60975	68	6	53	9	57
TMR_00562	tmRNA links to Rfam database...	0.38	0.39	0.37	40	72663	76	13	55	8	62
TMR_00563	tmRNA links to Rfam database...	0.41	0.44	0.38	45	75349	80	18	54	8	58
TMR_00566	tmRNA links to Rfam database...	0.32	0.33	0.32	33	60622	76	13	58	5	67
TMR_00568	tmRNA links to Rfam database...	0.26	0.27	0.25	27	60617	88	12	70	6	72
TMR_00570	tmRNA links to Rfam database...	0.35	0.36	0.35	35	60277	74	5	61	8	62
TMR_00571	tmRNA links to Rfam database...	0.28	0.29	0.28	29	60621	84	12	64	8	70
TMR_00576	tmRNA links to Rfam database...	0.54	0.55	0.53	56	60273	58	11	38	9	46
TMR_00579	tmRNA links to Rfam database...	0.27	0.31	0.24	28	80484	99	20	69	10	62
TMR_00580	tmRNA links to Rfam database...	0.31	0.31	0.30	31	60624	78	15	56	7	69
TMR_00581	tmRNA links to Rfam database...	0.15	0.15	0.14	15	62374	99	13	79	7	83
TMR_00584	tmRNA links to Rfam database...	0.40	0.42	0.38	41	60966	74	9	59	6	56
TMR_00586	tmRNA links to Rfam database...	0.36	0.37	0.35	36	60972	68	12	55	1	61
TMR_00587	tmRNA links to Rfam database...	0.76	0.75	0.77	75	61328	28	4	18	6	25
TMR_00588	tmRNA links to Rfam database...	0.29	0.31	0.27	31	77307	92	20	63	9	70
TMR_00594	tmRNA links to Rfam database...	0.22	0.23	0.20	24	79283	99	19	75	5	80
TMR_00596	tmRNA links to Rfam database...	0.21	0.23	0.20	22	78100	101	17	71	13	73
TMR_00599	tmRNA links to Rfam database...	0.15	0.18	0.13	13	63090	94	38	49	7	59
TMR_00600	tmRNA links to Rfam database...	0.19	0.19	0.19	22	79684	96	18	76	2	93
TMR_00601	tmRNA links to Rfam database...	0.35	0.38	0.33	16	58947	79	10	23	46	26
TMR_00603	tmRNA links to Rfam database...	0.64	0.65	0.64	28	60334	78	7	9	62	15
TMR_00604	tmRNA links to Rfam database...	0.62	0.63	0.63	70	62723	48	5	37	6	42
TMR_00605	tmRNA links to Rfam database...	0.44	0.45	0.43	49	74191	67	17	48	2	59
TMR_00606	tmRNA links to Rfam database...	0.51	0.52	0.50	56	68893	66	8	49	9	51
TMR_00609	tmRNA links to Rfam database...	0.65	0.65	0.65	74	63433	44	8	31	5	39
TMR_00610	tmRNA links to Rfam database...	0.62	0.63	0.61	65	62021	54	7	35	12	39
TMR_00611	tmRNA links to Rfam database...	0.62	0.63	0.61	64	61320	47	8	33	6	38
TMR_00612	tmRNA links to Rfam database...	0.40	0.41	0.38	43	60614	74	9	60	5	61
TMR_00614	tmRNA links to Rfam database...	0.30	0.30	0.30	31	60971	79	8	65	6	73
TMR_00615	tmRNA links to Rfam database...	0.31	0.32	0.30	31	63799	83	15	58	10	65
TMR_00616	tmRNA links to Rfam database...	0.26	0.27	0.25	27	67055	83	21	58	4	72
TMR_00617	tmRNA links to Rfam database...	0.38	0.43	0.34	25	34642	54	16	33	5	33
TMR_00623	tmRNA links to Rfam database...	0.49	0.48	0.49	52	61319	63	1	53	9	56
TMR_00624	tmRNA links to Rfam database...	0.42	0.44	0.41	47	62366	78	3	65	10	61
TMR_00625	tmRNA links to Rfam database...	0.21	0.23	0.21	24	78886	97	26	67	4	82
TMR_00626	tmRNA links to Rfam database...	0.39	0.40	0.38	44	67780	78	12	60	6	65
TMR_00680	tmRNA links to Rfam database...	0.23	0.25	0.21	25	67777	94	21	73	0	74
TMR_00681	tmRNA links to Rfam database...	0.47	0.47	0.47	46	65969	61	8	43	10	51
TMR_00683	tmRNA links to Rfam database...	0.16	0.17	0.14	17	82910	111	16	85	10	83
TMR_00686	tmRNA links to Rfam database...	0.47	0.48	0.47	52	71142	73	13	46	14	56
TMR_00687	tmRNA links to Rfam database...	0.35	0.35	0.35	39	71518	85	6	68	11	72
TMR_00696	tmRNA links to Rfam database...	0.20	0.22	0.19	25	84946	116	29	78	9	89
TMR_00698	tmRNA links to Rfam database...	0.51	0.50	0.51	52	63089	52	11	38	3	52
TMR_00699	tmRNA links to Rfam database...	0.33	0.34	0.32	35	67053	77	12	61	4	67
TMR_00702	tmRNA links to Rfam database...	0.56	0.57	0.55	57	67057	52	15	32	5	43
TMR_00703	tmRNA links to Rfam database...	0.26	0.26	0.25	26	67426	82	9	67	6	73
TMR_00706	tmRNA links to Rfam database...	0.52	0.52	0.52	54	66327	53	7	42	4	49
TMR_00711	tmRNA links to Rfam database...	0.53	0.55	0.51	54	67791	57	17	34	6	44
TMR_00712	tmRNA links to Rfam database...	0.28	0.29	0.26	32	78485	96	16	73	7	77
TMR_00716	tmRNA links to Rfam database...	0.18	0.19	0.17	19	62723	93	18	75	0	81

^top

Performance of RNAshapes - scored lower in this pairwise comparison

1. Total counts & total scores for RNAshapes

Total Base Pair Counts
Total TP	21058
Total TN	32231367
Total FP	33202
Total FP CONTRA	4752
Total FP INCONS	25082
Total FP COMP	3368
Total FN	31060

Total Scores
MCC	0.408
Average MCC ± 95% Confidence Intervals	0.407 ± 0.015
Sensitivity	0.404
Positive Predictive Value	0.414
Nr of predictions	526

^top

2. Individual counts for RNAshapes [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.65	0.61	0.69	46	34124	28	3	18	7	29
ASE_00002	RNaseP_arch links to Rfam database...	0.47	0.45	0.49	33	35444	39	4	30	5	40
ASE_00004	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.74	67	47804	26	3	21	2	30
ASE_00005	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.41	43	57866	65	3	58	4	74
ASE_00006	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	63	47499	31	3	21	7	30
ASE_00007	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.43	44	59583	62	3	55	4	66
ASE_00009	RNaseP_arch links to Rfam database...	0.40	0.37	0.43	25	26048	35	2	31	2	42
ASE_00012	RNaseP_bact_a links to Rfam database...	0.46	0.42	0.50	52	73815	55	5	48	2	71
ASE_00014	RNaseP_arch links to Rfam database...	0.12	0.12	0.13	13	54184	89	8	80	1	93
ASE_00017	RNaseP_nuc links to Rfam database...	0.13	0.14	0.12	9	50962	82	12	57	13	55
ASE_00018	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	87	80480	36	2	32	2	47
ASE_00020	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.51	57	73809	57	8	46	3	69
ASE_00022	RNaseP_bact_b links to Rfam database...	0.44	0.43	0.45	53	82911	70	5	59	6	71
ASE_00023	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.59	72	84132	55	7	44	4	55
ASE_00025	RNaseP_nuc links to Rfam database...	0.23	0.25	0.21	18	78522	110	18	48	44	53
ASE_00026	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	60	59584	48	4	37	7	50
ASE_00028	RNaseP_bact_b links to Rfam database...	0.52	0.50	0.55	63	84551	58	4	48	6	63
ASE_00029	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	51	82917	61	6	54	1	71
ASE_00030	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	82	85359	52	3	47	2	63
ASE_00031	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	59	86621	57	2	54	1	67
ASE_00032	RNaseP_bact_a links to Rfam database...	0.42	0.42	0.43	50	80083	70	8	59	3	68
ASE_00033	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.47	48	64878	56	2	52	2	73
ASE_00035	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.46	51	70389	64	7	53	4	67
ASE_00036	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.68	76	75743	45	3	33	9	56
ASE_00037	RNaseP_bact_a links to Rfam database...	0.23	0.23	0.24	25	59237	81	4	74	3	85
ASE_00038	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.65	58	53539	37	1	30	6	43
ASE_00040	RNaseP_bact_a links to Rfam database...	0.45	0.43	0.48	57	78883	65	6	57	2	76
ASE_00044	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	64	54514	41	3	34	4	41
ASE_00046	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.65	57	50315	31	3	28	0	46
ASE_00047	RNaseP_bact_a links to Rfam database...	0.16	0.15	0.17	20	74190	96	9	86	1	110
ASE_00052	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.48	47	61328	55	3	47	5	65
ASE_00053	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	67	79275	62	7	52	3	66
ASE_00056	-	0.37	0.36	0.38	26	30807	44	6	37	1	46
ASE_00057	RNaseP_bact_a links to Rfam database...	0.45	0.43	0.48	58	82094	69	5	58	6	76
ASE_00064	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	41	45369	49	2	39	8	48
ASE_00066	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.65	74	72276	41	5	35	1	56
ASE_00068	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.53	38	37603	37	2	32	3	47
ASE_00069	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	81	82902	50	5	40	5	59
ASE_00074	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.52	58	67784	54	6	48	0	61
ASE_00077	RNaseP_bact_a links to Rfam database...	0.36	0.36	0.36	31	45065	54	8	46	0	55
ASE_00078	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.70	56	42991	30	4	20	6	27
ASE_00079	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.49	46	55518	47	6	41	0	54
ASE_00080	RNaseP_bact_a links to Rfam database...	0.45	0.43	0.46	53	71517	61	7	54	0	70
ASE_00081	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.72	57	49691	25	3	19	3	40
ASE_00082	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.40	43	70393	76	6	58	12	73
ASE_00083	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.76	74	62384	26	5	18	3	36
ASE_00084	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.70	60	53542	32	5	21	6	39
ASE_00087	RNaseP_bact_a links to Rfam database...	0.42	0.38	0.47	55	88293	65	8	54	3	89
ASE_00089	-	0.30	0.28	0.32	22	31306	48	2	45	1	57
ASE_00090	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.52	52	55511	54	3	45	6	49
ASE_00092	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.70	73	63441	39	2	30	7	40
ASE_00096	RNaseP_bact_a links to Rfam database...	0.45	0.43	0.48	50	63441	58	7	48	3	65
ASE_00099	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.40	44	64511	67	6	59	2	76
ASE_00100	RNaseP_nuc links to Rfam database...	0.13	0.14	0.12	11	82126	122	15	63	44	65
ASE_00104	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	56	64155	52	2	48	2	63
ASE_00105	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.42	43	64159	61	10	49	2	68
ASE_00107	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	72	73036	46	3	42	1	55
ASE_00108	RNaseP_nuc links to Rfam database...	0.23	0.29	0.19	18	46878	80	23	52	5	45
ASE_00111	RNaseP_nuc links to Rfam database...	0.26	0.32	0.22	18	50004	74	26	38	10	39
ASE_00112	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.78	80	75364	28	5	17	6	36
ASE_00115	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.50	47	54521	58	3	44	11	54
ASE_00116	RNaseP_arch links to Rfam database...	0.14	0.14	0.15	9	31567	53	5	45	3	57
ASE_00118	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.47	45	60630	57	7	44	6	57
ASE_00119	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.64	64	62735	39	4	32	3	44
ASE_00120	RNaseP_arch links to Rfam database...	0.30	0.29	0.31	27	46884	60	9	51	0	67
ASE_00121	RNaseP_arch links to Rfam database...	0.32	0.32	0.33	29	45063	60	8	50	2	63
ASE_00122	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.51	40	43287	38	0	38	0	48
ASE_00123	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	29	38427	51	4	43	4	56
ASE_00125	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.60	44	39267	31	2	27	2	44
ASE_00126	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.52	40	40393	44	4	33	7	42
ASE_00128	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.74	64	53215	28	1	21	6	36
ASE_00129	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.39	40	62733	65	4	58	3	71
ASE_00131	RNaseP_bact_a links to Rfam database...	0.53	0.48	0.58	41	39269	40	2	28	10	44
ASE_00132	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	48	50313	44	6	36	2	47
ASE_00134	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.49	47	50308	50	5	43	2	48
ASE_00135	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.49	48	63093	56	4	45	7	61
ASE_00136	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.63	57	48115	36	5	28	3	35
ASE_00137	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	66	48430	26	3	17	6	32
ASE_00138	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.41	31	40394	45	6	39	0	50
ASE_00139	RNaseP_bact_a links to Rfam database...	0.43	0.38	0.48	40	54202	47	2	41	4	64
ASE_00140	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.70	71	70774	33	7	24	2	54
ASE_00142	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.66	69	67056	40	4	32	4	53
ASE_00145	RNaseP_arch links to Rfam database...	0.36	0.35	0.38	39	70021	70	7	58	5	72
ASE_00146	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	48	70764	67	1	63	3	76
ASE_00151	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.39	35	51913	57	12	43	2	63
ASE_00153	RNaseP_nuc links to Rfam database...	0.35	0.40	0.32	29	57538	88	15	48	25	44
ASE_00154	RNaseP_arch links to Rfam database...	0.54	0.52	0.55	56	65239	49	6	40	3	51
ASE_00163	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	48	53217	44	5	31	8	45
ASE_00165	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.56	54	52879	42	11	31	0	47
ASE_00168	RNaseP_nuc links to Rfam database...	0.32	0.38	0.28	24	60639	85	22	41	22	40
ASE_00169	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.60	57	57196	41	3	35	3	50
ASE_00170	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.66	57	48741	37	6	24	7	36
ASE_00171	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.40	36	48427	57	7	46	4	58
ASE_00172	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.68	63	58903	38	4	26	8	43
ASE_00174	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	48	60975	55	4	48	3	61
ASE_00175	RNaseP_bact_a links to Rfam database...	0.42	0.43	0.41	46	59920	70	8	57	5	61
ASE_00176	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.47	47	59930	57	6	48	3	63
ASE_00179	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	46	44173	37	6	28	3	38
ASE_00180	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.55	50	51269	47	5	36	6	50
ASE_00181	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.52	53	57529	48	5	43	0	53
ASE_00182	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.52	67	84125	63	5	58	0	69
ASE_00183	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	64	61323	41	5	33	3	49
ASE_00184	RNaseP_bact_a links to Rfam database...	0.57	0.58	0.57	59	54512	44	8	36	0	43
ASE_00185	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	70	73419	54	5	42	7	58
ASE_00186	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.64	75	78886	43	3	39	1	57
ASE_00187	RNaseP_arch links to Rfam database...	0.41	0.40	0.43	46	68528	66	5	56	5	69
ASE_00189	RNaseP_bact_b links to Rfam database...	0.56	0.54	0.59	55	63097	42	9	29	4	47
ASE_00190	RNaseP_bact_b links to Rfam database...	0.45	0.43	0.46	39	45367	45	5	40	0	51
ASE_00192	RNaseP_bact_b links to Rfam database...	0.43	0.40	0.46	53	84550	69	6	57	6	80
ASE_00194	RNaseP_bact_b links to Rfam database...	0.45	0.44	0.46	52	73422	66	8	54	4	67
ASE_00195	-	0.63	0.62	0.64	82	86191	52	8	39	5	51
ASE_00196	RNaseP_arch links to Rfam database...	0.49	0.49	0.49	37	31551	41	2	36	3	38
ASE_00197	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.61	73	89133	47	4	43	0	72
ASE_00198	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.40	36	52560	57	1	53	3	66
ASE_00203	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.76	65	46579	26	6	15	5	31
ASE_00204	RNaseP_bact_b links to Rfam database...	0.61	0.58	0.64	65	67795	41	10	26	5	47
ASE_00205	RNaseP_arch links to Rfam database...	0.46	0.47	0.45	42	45962	55	9	43	3	48
ASE_00209	RNaseP_arch links to Rfam database...	0.49	0.45	0.53	40	42995	36	3	33	0	48
ASE_00210	RNaseP_arch links to Rfam database...	0.55	0.55	0.55	36	27196	29	5	24	0	29
ASE_00213	RNaseP_arch links to Rfam database...	0.30	0.29	0.32	19	27201	43	2	39	2	47
ASE_00214	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	69	56180	38	5	26	7	34
ASE_00215	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.56	50	48426	43	2	38	3	49
ASE_00216	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.79	59	39265	22	3	13	6	23
ASE_00217	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	31	40389	57	2	48	7	59
ASE_00221	RNaseP_bact_a links to Rfam database...	0.41	0.38	0.44	45	64517	62	3	55	4	72
ASE_00227	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.62	68	78893	43	4	38	1	65
ASE_00228	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.64	54	46886	34	9	22	3	32
ASE_00229	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.56	48	42401	39	11	26	2	39
ASE_00231	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.46	42	47803	54	5	45	4	54
ASE_00232	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.67	55	38421	29	8	19	2	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.62	68	75356	45	5	37	3	61
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45674	97	22	57	18	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.45	47	64157	60	6	51	3	67
ASE_00240	RNaseP_bact_a links to Rfam database...	0.45	0.43	0.48	40	46581	47	4	40	3	53
ASE_00241	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	40	43879	49	2	35	12	47
ASE_00242	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.38	36	60979	63	3	57	3	76
ASE_00246	RNaseP_nuc links to Rfam database...	0.16	0.18	0.14	12	48119	84	23	51	10	55
ASE_00247	RNaseP_nuc links to Rfam database...	0.17	0.19	0.16	12	54211	90	17	45	28	52
ASE_00248	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.41	42	62379	65	2	58	5	72
ASE_00250	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	63	78882	61	6	52	3	68
ASE_00254	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	47	36779	30	3	27	0	35
ASE_00255	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	69	74574	50	5	43	2	61
ASE_00257	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	49	50947	45	7	37	1	48
ASE_00259	RNaseP_bact_a links to Rfam database...	0.39	0.36	0.41	44	73046	65	8	55	2	77
ASE_00263	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.75	89	70382	31	6	23	2	31
ASE_00264	RNaseP_nuc links to Rfam database...	0.77	0.70	0.84	70	49058	26	0	13	13	30
ASE_00267	RNaseP_bact_a links to Rfam database...	0.24	0.23	0.25	20	45071	64	8	51	5	68
ASE_00270	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	61	72272	62	5	52	5	67
ASE_00274	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.49	47	55516	53	10	38	5	56
ASE_00277	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	38	48118	49	7	42	0	53
ASE_00279	RNaseP_bact_a links to Rfam database...	0.35	0.33	0.38	33	53214	59	4	50	5	68
ASE_00280	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.40	36	51912	58	3	52	3	62
ASE_00281	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.58	45	44474	36	5	27	4	43
ASE_00282	RNaseP_bact_a links to Rfam database...	0.34	0.33	0.36	42	77698	75	6	69	0	85
ASE_00283	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.61	57	61682	41	7	30	4	50
ASE_00284	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	69	58214	35	5	23	7	39
ASE_00285	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.77	77	68906	30	1	22	7	45
ASE_00286	RNaseP_bact_a links to Rfam database...	0.36	0.35	0.38	32	46580	57	7	46	4	60
ASE_00287	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.63	56	54857	39	3	30	6	47
ASE_00288	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.37	32	45970	54	3	51	0	61
ASE_00289	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.69	94	100888	44	6	37	1	63
ASE_00291	-	0.41	0.40	0.42	38	48425	54	9	44	1	56
ASE_00292	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.56	66	81692	52	5	47	0	72
ASE_00294	RNaseP_bact_a links to Rfam database...	0.66	0.60	0.72	102	114340	44	0	39	5	69
ASE_00295	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	64	73800	59	9	47	3	67
ASE_00297	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	49	52885	43	4	37	2	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.45	45	67428	57	3	52	2	68
ASE_00299	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	45	49360	56	5	45	6	55
ASE_00313	RNaseP_nuc links to Rfam database...	0.30	0.30	0.30	27	62390	82	9	55	18	62
ASE_00318	RNaseP_bact_b links to Rfam database...	0.61	0.58	0.64	69	80092	44	14	25	5	49
ASE_00327	RNaseP_nuc links to Rfam database...	0.77	0.75	0.78	67	57205	34	3	16	15	22
ASE_00328	RNaseP_bact_b links to Rfam database...	0.59	0.55	0.63	62	72672	45	3	34	8	50
ASE_00330	RNaseP_nuc links to Rfam database...	0.42	0.41	0.44	37	56196	65	6	41	18	53
ASE_00332	RNaseP_bact_a links to Rfam database...	0.35	0.33	0.36	46	81683	82	2	79	1	92
ASE_00335	RNaseP_bact_b links to Rfam database...	0.52	0.50	0.55	58	75360	57	9	39	9	58
ASE_00337	RNaseP_nuc links to Rfam database...	0.56	0.58	0.55	41	39266	47	4	29	14	30
ASE_00338	RNaseP_nuc links to Rfam database...	0.57	0.57	0.57	56	66332	61	5	37	19	42
ASE_00339	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	62	80091	57	4	43	10	57
ASE_00340	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.67	55	45974	34	5	22	7	30
ASE_00342	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	54	62380	47	0	47	0	61
ASE_00343	RNaseP_bact_a links to Rfam database...	0.32	0.32	0.32	36	83322	91	9	69	13	77
ASE_00346	RNaseP_arch links to Rfam database...	0.35	0.34	0.37	33	48116	59	5	51	3	64
ASE_00353	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.56	57	57869	48	2	42	4	50
ASE_00359	RNaseP_arch links to Rfam database...	0.63	0.60	0.66	48	42705	30	1	24	5	32
ASE_00360	RNaseP_arch links to Rfam database...	0.29	0.29	0.29	19	29337	51	10	37	4	46
ASE_00361	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	60	75348	61	11	47	3	67
ASE_00362	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	35	48122	53	6	42	5	56
ASE_00363	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	40	51271	56	4	45	7	54
ASE_00364	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.33	31	54191	69	4	59	6	74
ASE_00366	RNaseP_bact_a links to Rfam database...	0.27	0.28	0.27	27	58554	75	10	62	3	71
ASE_00367	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.32	26	42990	63	4	51	8	60
ASE_00369	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.47	47	55846	56	4	48	4	60
ASE_00370	RNaseP_bact_a links to Rfam database...	0.46	0.42	0.50	35	41835	42	1	34	7	49
ASE_00372	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	51	51908	44	9	35	0	49
ASE_00374	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	37	44765	48	10	38	0	51
ASE_00375	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.70	67	60282	34	3	26	5	43
ASE_00376	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	51	56857	50	4	41	5	54
ASE_00377	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.61	60	57531	45	2	37	6	47
ASE_00379	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.60	49	45975	37	7	25	5	40
ASE_00380	RNaseP_bact_a links to Rfam database...	0.34	0.33	0.35	33	54851	67	6	56	5	66
ASE_00382	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.51	37	41832	46	2	34	10	47
ASE_00383	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.60	56	54522	41	2	35	4	49
ASE_00384	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	61	48431	29	6	18	5	31
ASE_00385	RNaseP_bact_a links to Rfam database...	0.37	0.38	0.37	31	41821	55	7	46	2	50
ASE_00386	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.41	37	50313	58	5	48	5	59
ASE_00387	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.49	51	55840	55	5	49	1	53
ASE_00388	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	44	45671	46	2	36	8	45
ASE_00390	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.41	33	42114	49	11	37	1	52
ASE_00393	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.45	36	47815	50	2	42	6	57
ASE_00394	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.47	43	46880	54	7	41	6	50
ASE_00395	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.61	46	41540	40	1	29	10	38
ASE_00396	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.42	32	41539	51	6	39	6	51
ASE_00397	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.41	41	54514	60	7	53	0	64
ASE_00398	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	57	55854	38	3	31	4	47
ASE_00400	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.57	56	57871	44	4	39	1	50
ASE_00401	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.48	62	76899	67	12	55	0	64
ASE_00402	RNaseP_bact_a links to Rfam database...	0.27	0.26	0.29	22	42411	57	3	50	4	63
ASE_00403	RNaseP_bact_a links to Rfam database...	0.41	0.38	0.44	41	55852	56	3	49	4	66
ASE_00404	RNaseP_bact_a links to Rfam database...	0.35	0.34	0.36	29	42991	59	2	49	8	56
ASE_00406	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.71	61	48742	31	4	21	6	33
ASE_00408	-	0.61	0.63	0.59	45	32309	33	8	23	2	26
ASE_00409	-	0.45	0.46	0.45	38	40956	49	6	41	2	45
ASE_00411	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	47	49369	40	12	27	1	42
ASE_00412	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.40	39	58213	59	12	47	0	66
ASE_00413	RNaseP_bact_a links to Rfam database...	0.47	0.48	0.45	39	44465	49	11	36	2	42
ASE_00414	RNaseP_bact_a links to Rfam database...	0.31	0.28	0.33	27	46279	58	2	52	4	68
ASE_00415	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	46	54848	54	6	46	2	57
ASE_00416	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.48	52	77313	61	1	55	5	75
ASE_00417	RNaseP_arch links to Rfam database...	0.35	0.36	0.34	36	54510	73	4	65	4	64
ASE_00418	RNaseP_arch links to Rfam database...	0.33	0.33	0.32	25	38704	54	4	48	2	50
ASE_00419	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.65	59	54855	36	4	28	4	44
ASE_00422	RNaseP_bact_a links to Rfam database...	0.43	0.44	0.43	41	46876	57	9	45	3	53
ASE_00423	RNaseP_bact_a links to Rfam database...	0.35	0.34	0.36	37	56850	69	9	57	3	72
ASE_00426	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.33	34	60973	68	5	63	0	74
ASE_00428	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.47	53	76523	65	5	55	5	72
ASE_00429	-	0.27	0.26	0.29	17	28144	51	2	40	9	49
ASE_00430	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	53	46879	44	7	32	5	44
ASE_00431	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.63	50	46280	43	3	27	13	45
ASE_00434	RNaseP_bact_b links to Rfam database...	0.50	0.47	0.54	52	68168	57	12	33	12	58
ASE_00437	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.46	56	79280	65	4	61	0	79
ASE_00438	RNaseP_bact_a links to Rfam database...	0.38	0.35	0.41	41	65965	60	2	58	0	75
ASE_00441	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.74	71	64165	33	4	21	8	41
ASE_00447	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.73	73	60278	32	2	25	5	43
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.23	25	64150	91	8	78	5	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.56	60	70768	51	3	45	3	65
CRW_00016	Intron_gpI links to Rfam database...	0.49	0.48	0.51	57	77309	66	7	48	11	63
CRW_00608	-	0.82	0.77	0.87	61	35708	15	2	7	6	18
CRW_00610	Intron_gpI links to Rfam database...	0.55	0.53	0.57	43	36240	37	3	29	5	38
CRW_00611	-	0.74	0.72	0.76	54	31304	20	4	13	3	21
CRW_00613	Intron_gpI links to Rfam database...	0.64	0.58	0.70	45	34916	28	1	18	9	33
CRW_00618	Intron_gpI links to Rfam database...	0.17	0.18	0.16	11	56213	77	9	47	21	50
CRW_00632	-	0.58	0.58	0.59	74	82903	59	5	46	8	54
CRW_00633	Intron_gpI links to Rfam database...	0.55	0.54	0.56	57	63445	45	8	36	1	49
CRW_00634	Intron_gpI links to Rfam database...	0.33	0.34	0.33	32	64522	75	8	58	9	62
CRW_00641	-	0.64	0.66	0.63	50	39824	37	9	20	8	26
CRW_00642	-	0.41	0.46	0.37	30	47196	61	10	42	9	35
CRW_00645	-	0.74	0.79	0.70	53	35435	32	8	15	9	14
CRW_00646	-	0.83	0.80	0.86	51	34921	21	0	8	13	13
CRW_00653	-	0.73	0.71	0.75	95	94704	33	4	27	2	39
CRW_00654	-	0.70	0.69	0.71	85	78091	37	6	28	3	39
CRW_00655	-	0.69	0.69	0.70	85	89132	40	8	28	4	39
CRW_00658	-	0.43	0.43	0.44	44	74590	69	13	44	12	58
CRW_00659	-	0.29	0.31	0.27	19	32314	53	15	37	1	42
CRW_00660	-	0.54	0.53	0.54	32	22096	31	6	21	4	28
CRW_00661	-	0.19	0.22	0.17	11	24244	57	18	37	2	40
CRW_00662	-	0.38	0.40	0.37	26	28609	49	7	38	4	39
CRW_00663	-	0.15	0.16	0.15	10	26039	61	3	54	4	51
CRW_00664	-	0.05	0.05	0.05	4	53540	90	17	67	6	74
CRW_00665	-	0.17	0.19	0.16	9	23596	54	15	33	6	39
CRW_00669	-	0.62	0.59	0.65	70	97353	52	8	30	14	49
CRW_00670	Intron_gpI links to Rfam database...	0.74	0.72	0.76	86	70012	32	0	27	5	34
CRW_00671	Intron_gpI links to Rfam database...	0.65	0.62	0.67	73	62726	43	1	35	7	44
CRW_00672	Intron_gpI links to Rfam database...	0.66	0.66	0.66	73	72279	45	8	30	7	38
CRW_00674	Intron_gpI links to Rfam database...	0.68	0.67	0.69	83	83316	41	6	31	4	41
CRW_00676	Intron_gpI links to Rfam database...	0.58	0.62	0.55	71	93398	67	17	42	8	44
CRW_00677	-	0.66	0.65	0.68	68	71910	43	6	26	11	37
CRW_00679	-	0.28	0.28	0.28	30	76528	88	10	68	10	77
CRW_00687	-	0.68	0.73	0.63	48	28604	32	9	19	4	18
CRW_00688	-	0.79	0.77	0.81	44	21891	13	2	8	3	13
CRW_00689	-	0.66	0.68	0.65	52	33590	30	10	18	2	25
CRW_00690	-	0.64	0.61	0.67	42	33348	28	7	14	7	27
CRW_00691	-	0.39	0.42	0.37	28	27186	51	8	39	4	39
CRW_00692	Intron_gpI links to Rfam database...	0.43	0.46	0.40	41	68533	70	18	43	9	49
CRW_00693	-	0.85	0.83	0.87	101	89137	32	1	14	17	21
CRW_00694	-	0.63	0.63	0.63	77	85782	53	10	36	7	45
CRW_00703	-	0.68	0.67	0.70	44	40407	32	3	16	13	22
CRW_00715	-	0.62	0.61	0.64	63	69280	41	6	29	6	41
CRW_00721	-	0.46	0.53	0.40	36	58562	67	21	34	12	32
PDB_00078	-	0.71	0.68	0.75	78	49666	26	5	21	0	37
PDB_00278	-	0.17	0.18	0.17	13	24901	62	6	56	0	59
PDB_00403	-	0.60	0.59	0.61	90	124603	66	13	44	9	63
PDB_00423	-	0.07	0.07	0.07	5	26725	66	5	61	0	69
PDB_00701	-	0.57	0.53	0.60	58	45355	41	4	34	3	51
PDB_00747	-	0.63	0.56	0.71	45	24468	18	0	18	0	35
PDB_00827	Intron_gpI links to Rfam database...	0.64	0.56	0.74	45	26967	17	0	16	1	36
PDB_00917	-	0.52	0.51	0.55	48	35157	47	4	36	7	47
PDB_00919	RNaseP_bact_a links to Rfam database...	0.27	0.25	0.29	26	44164	67	5	58	4	77
PDB_01129	-	0.47	0.49	0.45	35	35433	48	22	21	5	36
PDB_01157	-	0.28	0.28	0.29	27	49994	65	9	56	0	71
RFA_00598	Telomerase-vert links to Rfam database...	0.53	0.53	0.53	54	84565	71	7	40	24	47
TMR_00007	tmRNA links to Rfam database...	0.27	0.26	0.29	28	61680	73	10	58	5	80
TMR_00008	tmRNA links to Rfam database...	0.46	0.45	0.48	48	65965	63	7	46	10	58
TMR_00010	tmRNA links to Rfam database...	0.34	0.34	0.34	33	57874	63	11	52	0	63
TMR_00012	tmRNA links to Rfam database...	0.20	0.21	0.20	17	64535	83	20	48	15	64
TMR_00014	tmRNA links to Rfam database...	0.28	0.28	0.28	31	68525	86	13	66	7	79
TMR_00017	tmRNA links to Rfam database...	0.22	0.22	0.22	22	67063	80	10	66	4	80
TMR_00018	tmRNA links to Rfam database...	0.23	0.24	0.23	22	64523	79	15	60	4	70
TMR_00028	tmRNA links to Rfam database...	0.23	0.24	0.23	23	62737	79	11	64	4	74
TMR_00030	tmRNA links to Rfam database...	0.14	0.14	0.14	16	75743	101	11	85	5	95
TMR_00034	tmRNA links to Rfam database...	0.31	0.30	0.32	33	59929	74	5	64	5	77
TMR_00035	tmRNA links to Rfam database...	0.13	0.13	0.13	13	67792	96	10	81	5	85
TMR_00038	tmRNA links to Rfam database...	0.25	0.25	0.25	28	71142	87	11	72	4	82
TMR_00042	tmRNA links to Rfam database...	0.18	0.17	0.18	17	62741	80	9	68	3	81
TMR_00046	tmRNA links to Rfam database...	0.17	0.18	0.17	17	62734	85	11	73	1	79
TMR_00047	tmRNA links to Rfam database...	0.28	0.33	0.24	19	48436	73	15	46	12	38
TMR_00048	tmRNA links to Rfam database...	0.11	0.12	0.10	11	64874	99	16	79	4	84
TMR_00049	tmRNA links to Rfam database...	0.36	0.38	0.34	33	63094	71	16	47	8	54
TMR_00051	tmRNA links to Rfam database...	0.48	0.47	0.50	44	65615	58	9	35	14	50
TMR_00055	tmRNA links to Rfam database...	0.13	0.13	0.13	15	78884	104	22	82	0	99
TMR_00061	tmRNA links to Rfam database...	0.16	0.16	0.16	16	59587	89	5	77	7	83
TMR_00062	tmRNA links to Rfam database...	0.34	0.35	0.34	36	78500	82	10	60	12	68
TMR_00064	tmRNA links to Rfam database...	0.33	0.33	0.34	34	76927	73	18	49	6	69
TMR_00065	tmRNA links to Rfam database...	0.41	0.42	0.41	44	76528	68	19	45	4	62
TMR_00067	tmRNA links to Rfam database...	0.33	0.33	0.32	38	82097	84	16	64	4	76
TMR_00073	tmRNA links to Rfam database...	0.44	0.43	0.45	50	65591	64	5	57	2	67
TMR_00076	tmRNA links to Rfam database...	0.32	0.32	0.31	32	70774	75	20	50	5	68
TMR_00080	tmRNA links to Rfam database...	0.25	0.26	0.24	25	70396	79	25	54	0	71
TMR_00081	tmRNA links to Rfam database...	0.38	0.38	0.39	40	67058	63	17	46	0	66
TMR_00082	tmRNA links to Rfam database...	0.59	0.58	0.60	56	67802	43	12	26	5	40
TMR_00083	tmRNA links to Rfam database...	0.43	0.44	0.42	46	68155	66	15	49	2	59
TMR_00092	tmRNA links to Rfam database...	0.28	0.30	0.27	30	67417	83	19	62	2	71
TMR_00093	tmRNA links to Rfam database...	0.20	0.21	0.19	21	64149	91	15	76	0	81
TMR_00096	tmRNA links to Rfam database...	0.10	0.10	0.10	10	64883	96	14	73	9	90
TMR_00101	tmRNA links to Rfam database...	0.12	0.12	0.11	13	64146	105	13	89	3	94
TMR_00102	tmRNA links to Rfam database...	0.17	0.18	0.16	18	64150	97	15	78	4	83
TMR_00103	tmRNA links to Rfam database...	0.45	0.45	0.46	49	64154	59	9	49	1	59
TMR_00104	-	0.09	0.10	0.08	7	66704	90	31	53	6	63
TMR_00109	tmRNA links to Rfam database...	0.24	0.24	0.24	29	88290	91	15	76	0	93
TMR_00116	tmRNA links to Rfam database...	0.44	0.43	0.45	45	64880	65	7	48	10	59
TMR_00117	tmRNA links to Rfam database...	0.54	0.54	0.54	64	80082	63	7	47	9	54
TMR_00118	tmRNA links to Rfam database...	0.23	0.23	0.23	28	81286	99	8	84	7	92
TMR_00119	tmRNA links to Rfam database...	0.26	0.25	0.26	26	71911	78	7	66	5	78
TMR_00123	tmRNA links to Rfam database...	0.05	0.05	0.05	5	66332	97	16	77	4	96
TMR_00124	tmRNA links to Rfam database...	0.37	0.38	0.37	37	70401	74	15	47	12	61
TMR_00125	tmRNA links to Rfam database...	0.24	0.25	0.24	25	64155	85	16	65	4	74
TMR_00127	tmRNA links to Rfam database...	0.22	0.23	0.22	22	62735	83	19	59	5	75
TMR_00128	tmRNA links to Rfam database...	0.24	0.25	0.24	24	60975	78	15	61	2	72
TMR_00131	tmRNA links to Rfam database...	0.45	0.45	0.45	45	64880	64	10	45	9	54
TMR_00135	tmRNA links to Rfam database...	0.23	0.22	0.23	22	62741	82	10	62	10	77
TMR_00136	tmRNA links to Rfam database...	0.13	0.14	0.12	14	74571	106	23	83	0	87
TMR_00137	tmRNA links to Rfam database...	0.13	0.13	0.13	12	60979	88	20	64	4	77
TMR_00139	tmRNA links to Rfam database...	0.24	0.26	0.22	24	62021	88	22	61	5	67
TMR_00140	tmRNA links to Rfam database...	0.45	0.45	0.45	45	73819	72	6	50	16	55
TMR_00142	tmRNA links to Rfam database...	0.20	0.21	0.19	21	70764	98	14	77	7	81
TMR_00143	tmRNA links to Rfam database...	0.39	0.39	0.40	40	64519	71	10	51	10	63
TMR_00144	tmRNA links to Rfam database...	0.28	0.28	0.28	29	74202	79	12	62	5	74
TMR_00146	tmRNA links to Rfam database...	0.76	0.83	0.70	35	32081	46	10	5	31	7
TMR_00150	tmRNA links to Rfam database...	0.68	0.69	0.67	29	43028	47	2	12	33	13
TMR_00152	tmRNA links to Rfam database...	0.20	0.20	0.21	23	81295	99	11	77	11	92
TMR_00155	tmRNA links to Rfam database...	0.32	0.30	0.34	31	61684	68	5	56	7	73
TMR_00156	tmRNA links to Rfam database...	0.43	0.42	0.43	41	60283	59	10	44	5	56
TMR_00158	tmRNA links to Rfam database...	0.36	0.36	0.36	36	60627	67	11	52	4	63
TMR_00159	tmRNA links to Rfam database...	0.16	0.17	0.16	16	62026	91	18	68	5	76
TMR_00160	tmRNA links to Rfam database...	0.38	0.37	0.39	35	64530	63	13	42	8	60
TMR_00164	tmRNA links to Rfam database...	0.33	0.32	0.34	34	66694	75	6	61	8	72
TMR_00165	tmRNA links to Rfam database...	0.29	0.30	0.29	29	61675	81	10	62	9	68
TMR_00166	tmRNA links to Rfam database...	0.24	0.24	0.25	24	61681	75	7	64	4	77
TMR_00168	tmRNA links to Rfam database...	0.56	0.54	0.58	61	60970	49	3	41	5	53
TMR_00173	tmRNA links to Rfam database...	0.29	0.36	0.24	15	42133	75	20	27	28	27
TMR_00179	tmRNA links to Rfam database...	0.31	0.33	0.30	32	67054	80	12	63	5	66
TMR_00180	tmRNA links to Rfam database...	0.57	0.58	0.56	57	67060	55	7	37	11	42
TMR_00182	tmRNA links to Rfam database...	0.12	0.12	0.12	12	66332	90	17	69	4	90
TMR_00183	tmRNA links to Rfam database...	0.20	0.19	0.21	20	63095	80	11	64	5	83
TMR_00184	tmRNA links to Rfam database...	0.29	0.29	0.28	30	63083	79	6	71	2	72
TMR_00193	tmRNA links to Rfam database...	0.40	0.40	0.40	32	59260	58	14	34	10	48
TMR_00194	tmRNA links to Rfam database...	0.38	0.39	0.38	36	62741	61	16	42	3	57
TMR_00196	tmRNA links to Rfam database...	0.25	0.25	0.26	24	60984	72	7	60	5	73
TMR_00199	tmRNA links to Rfam database...	0.37	0.39	0.36	36	62735	71	23	41	7	56
TMR_00200	-	0.42	0.40	0.44	30	41548	48	5	33	10	45
TMR_00204	tmRNA links to Rfam database...	0.27	0.27	0.28	26	60285	73	17	50	6	71
TMR_00207	tmRNA links to Rfam database...	0.28	0.28	0.28	29	72287	79	12	62	5	74
TMR_00223	tmRNA links to Rfam database...	0.13	0.13	0.13	12	64168	85	11	70	4	83
TMR_00224	tmRNA links to Rfam database...	0.22	0.23	0.22	23	64877	81	10	70	1	78
TMR_00226	tmRNA links to Rfam database...	0.36	0.37	0.36	39	69642	71	12	58	1	66
TMR_00227	tmRNA links to Rfam database...	0.38	0.40	0.37	40	70017	71	7	61	3	61
TMR_00228	tmRNA links to Rfam database...	0.15	0.16	0.15	17	88297	104	22	74	8	91
TMR_00234	tmRNA links to Rfam database...	0.30	0.30	0.30	31	58891	80	15	59	6	71
TMR_00238	tmRNA links to Rfam database...	0.09	0.10	0.09	10	84552	112	12	92	8	91
TMR_00239	tmRNA links to Rfam database...	0.17	0.18	0.17	17	61675	86	13	71	2	79
TMR_00240	tmRNA links to Rfam database...	0.19	0.21	0.17	18	63087	88	18	67	3	67
TMR_00246	-	0.55	0.62	0.49	21	78167	110	6	16	88	13
TMR_00248	tmRNA links to Rfam database...	0.10	0.13	0.08	5	54226	90	18	36	36	33
TMR_00257	tmRNA links to Rfam database...	0.05	0.05	0.05	5	67067	93	9	80	4	93
TMR_00259	tmRNA links to Rfam database...	0.41	0.42	0.41	43	67791	65	14	48	3	60
TMR_00261	tmRNA links to Rfam database...	0.50	0.51	0.48	52	66687	59	20	36	3	49
TMR_00262	tmRNA links to Rfam database...	0.44	0.46	0.43	48	74193	64	19	45	0	56
TMR_00271	tmRNA links to Rfam database...	0.29	0.29	0.29	26	64172	67	12	51	4	65
TMR_00274	tmRNA links to Rfam database...	0.26	0.26	0.26	27	66691	82	11	66	5	78
TMR_00278	tmRNA links to Rfam database...	0.30	0.31	0.29	32	67787	85	7	70	8	70
TMR_00279	tmRNA links to Rfam database...	0.46	0.48	0.45	45	68905	64	13	43	8	49
TMR_00280	tmRNA links to Rfam database...	0.27	0.28	0.26	28	65960	85	11	67	7	73
TMR_00283	tmRNA links to Rfam database...	0.43	0.46	0.40	44	65232	70	17	48	5	52
TMR_00289	tmRNA links to Rfam database...	0.61	0.62	0.60	61	67059	54	11	30	13	37
TMR_00290	tmRNA links to Rfam database...	0.18	0.20	0.18	18	64159	92	15	69	8	74
TMR_00296	tmRNA links to Rfam database...	0.19	0.19	0.18	19	68902	87	16	69	2	79
TMR_00298	tmRNA links to Rfam database...	0.41	0.44	0.39	44	68152	70	18	51	1	57
TMR_00300	tmRNA links to Rfam database...	0.49	0.49	0.50	55	70389	67	8	48	11	57
TMR_00301	tmRNA links to Rfam database...	0.13	0.14	0.12	13	82110	100	20	72	8	83
TMR_00302	tmRNA links to Rfam database...	0.14	0.15	0.13	14	77310	101	25	72	4	80
TMR_00305	tmRNA links to Rfam database...	0.59	0.56	0.63	57	60985	45	5	28	12	45
TMR_00306	tmRNA links to Rfam database...	0.05	0.05	0.05	5	64158	100	6	92	2	101
TMR_00310	tmRNA links to Rfam database...	0.63	0.62	0.63	61	63806	44	9	27	8	37
TMR_00317	tmRNA links to Rfam database...	0.44	0.45	0.42	46	68156	66	17	46	3	56
TMR_00331	tmRNA links to Rfam database...	0.13	0.15	0.12	12	66695	101	14	74	13	70
TMR_00332	tmRNA links to Rfam database...	0.32	0.31	0.32	31	67065	67	7	58	2	68
TMR_00334	tmRNA links to Rfam database...	0.22	0.22	0.23	22	66699	79	10	64	5	79
TMR_00340	tmRNA links to Rfam database...	0.47	0.48	0.46	39	64176	71	7	39	25	42
TMR_00341	tmRNA links to Rfam database...	0.20	0.21	0.19	19	63089	85	18	64	3	73
TMR_00343	tmRNA links to Rfam database...	0.28	0.28	0.30	29	64882	77	7	62	8	76
TMR_00345	tmRNA links to Rfam database...	0.31	0.32	0.31	33	63796	78	15	59	4	71
TMR_00346	tmRNA links to Rfam database...	0.36	0.38	0.33	36	64153	74	19	53	2	58
TMR_00348	tmRNA links to Rfam database...	0.05	0.05	0.05	5	77324	110	14	78	18	94
TMR_00352	tmRNA links to Rfam database...	0.25	0.28	0.23	21	95176	106	19	50	37	54
TMR_00353	tmRNA links to Rfam database...	0.37	0.36	0.38	38	84154	79	16	47	16	67
TMR_00357	tmRNA links to Rfam database...	0.17	0.17	0.16	16	82931	98	16	65	17	76
TMR_00358	tmRNA links to Rfam database...	0.35	0.37	0.33	37	74967	80	33	41	6	62
TMR_00372	tmRNA links to Rfam database...	0.42	0.44	0.41	42	70398	76	12	48	16	54
TMR_00374	tmRNA links to Rfam database...	0.12	0.13	0.11	12	81699	101	25	74	2	80
TMR_00378	tmRNA links to Rfam database...	0.17	0.18	0.17	17	67797	93	8	74	11	80
TMR_00383	tmRNA links to Rfam database...	0.23	0.23	0.23	23	66694	87	12	66	9	77
TMR_00384	tmRNA links to Rfam database...	0.26	0.26	0.27	28	65599	82	7	69	6	80
TMR_00393	tmRNA links to Rfam database...	0.43	0.49	0.38	26	53233	67	19	23	25	27
TMR_00395	tmRNA links to Rfam database...	0.54	0.49	0.60	53	64531	42	5	31	6	56
TMR_00398	tmRNA links to Rfam database...	0.49	0.48	0.50	51	65239	57	2	49	6	55
TMR_00399	tmRNA links to Rfam database...	0.20	0.21	0.19	20	64876	91	21	63	7	74
TMR_00404	tmRNA links to Rfam database...	0.38	0.39	0.37	36	67431	75	11	50	14	56
TMR_00408	tmRNA links to Rfam database...	0.45	0.47	0.43	41	65971	66	13	41	12	47
TMR_00409	tmRNA links to Rfam database...	0.59	0.65	0.54	30	68579	74	8	18	48	16
TMR_00411	tmRNA links to Rfam database...	0.18	0.18	0.17	16	60983	83	14	62	7	71
TMR_00415	tmRNA links to Rfam database...	0.33	0.33	0.33	33	67062	69	12	54	3	68
TMR_00419	tmRNA links to Rfam database...	0.42	0.41	0.44	45	81707	76	9	49	18	66
TMR_00422	tmRNA links to Rfam database...	0.47	0.49	0.45	45	67797	63	13	41	9	47
TMR_00423	tmRNA links to Rfam database...	0.03	0.04	0.03	3	63802	105	27	71	7	70
TMR_00427	tmRNA links to Rfam database...	0.38	0.38	0.38	37	67431	65	13	47	5	60
TMR_00429	tmRNA links to Rfam database...	0.40	0.39	0.42	42	74590	68	7	52	9	67
TMR_00430	tmRNA links to Rfam database...	0.23	0.25	0.22	27	82497	97	24	73	0	82
TMR_00431	tmRNA links to Rfam database...	0.59	0.60	0.58	33	51946	69	9	15	45	22
TMR_00432	tmRNA links to Rfam database...	0.41	0.43	0.40	45	79687	79	14	54	11	59
TMR_00433	tmRNA links to Rfam database...	0.30	0.32	0.29	34	80083	84	15	68	1	72
TMR_00439	tmRNA links to Rfam database...	0.37	0.39	0.36	39	68526	78	20	50	8	62
TMR_00441	tmRNA links to Rfam database...	0.14	0.16	0.13	13	62029	94	24	62	8	70
TMR_00443	tmRNA links to Rfam database...	0.25	0.24	0.27	25	67068	75	11	57	7	79
TMR_00448	tmRNA links to Rfam database...	0.25	0.27	0.24	25	62023	81	10	70	1	67
TMR_00451	tmRNA links to Rfam database...	0.10	0.11	0.10	10	63444	92	18	74	0	79
TMR_00457	tmRNA links to Rfam database...	0.27	0.27	0.26	28	78500	83	19	59	5	74
TMR_00458	tmRNA links to Rfam database...	0.00	0.00	0.00	0	63450	104	13	83	8	93
TMR_00460	tmRNA links to Rfam database...	0.32	0.34	0.31	36	79284	86	17	64	5	70
TMR_00465	tmRNA links to Rfam database...	0.12	0.13	0.12	12	64159	91	18	72	1	82
TMR_00469	tmRNA links to Rfam database...	0.38	0.39	0.37	39	64514	71	18	49	4	61
TMR_00472	tmRNA links to Rfam database...	0.18	0.20	0.17	19	64510	95	14	77	4	78
TMR_00478	tmRNA links to Rfam database...	0.12	0.13	0.12	13	71901	99	29	67	3	86
TMR_00498	tmRNA links to Rfam database...	0.41	0.41	0.40	41	68904	75	12	49	14	58
TMR_00499	tmRNA links to Rfam database...	0.20	0.21	0.19	21	64512	92	6	81	5	78
TMR_00501	tmRNA links to Rfam database...	0.05	0.05	0.05	5	62381	96	14	81	1	87
TMR_00502	tmRNA links to Rfam database...	0.15	0.16	0.14	15	75359	101	19	73	9	78
TMR_00503	tmRNA links to Rfam database...	0.30	0.29	0.31	32	67793	79	6	65	8	79
TMR_00519	tmRNA links to Rfam database...	0.17	0.18	0.17	17	63088	95	18	67	10	78
TMR_00520	tmRNA links to Rfam database...	0.22	0.21	0.24	21	63101	78	8	60	10	78
TMR_00522	tmRNA links to Rfam database...	0.42	0.41	0.42	40	63095	64	8	47	9	57
TMR_00528	tmRNA links to Rfam database...	0.33	0.32	0.33	31	63097	72	14	48	10	66
TMR_00540	tmRNA links to Rfam database...	0.32	0.32	0.33	33	73435	74	4	64	6	71
TMR_00541	tmRNA links to Rfam database...	0.32	0.31	0.32	33	61673	78	5	65	8	72
TMR_00544	tmRNA links to Rfam database...	0.31	0.31	0.30	34	89562	86	22	58	6	74
TMR_00547	tmRNA links to Rfam database...	0.42	0.42	0.43	42	65243	58	4	52	2	58
TMR_00553	tmRNA links to Rfam database...	0.37	0.37	0.38	30	48126	53	5	44	4	51
TMR_00559	tmRNA links to Rfam database...	0.34	0.36	0.33	36	62372	73	14	59	0	65
TMR_00560	tmRNA links to Rfam database...	0.21	0.21	0.20	21	60970	84	13	71	0	77
TMR_00562	tmRNA links to Rfam database...	0.29	0.29	0.29	30	72666	81	11	64	6	72
TMR_00563	tmRNA links to Rfam database...	0.31	0.32	0.30	33	75356	83	19	58	6	70
TMR_00566	tmRNA links to Rfam database...	0.30	0.30	0.30	30	60626	74	13	57	4	70
TMR_00568	tmRNA links to Rfam database...	0.41	0.39	0.42	39	60634	59	7	46	6	60
TMR_00570	tmRNA links to Rfam database...	0.14	0.14	0.14	14	60278	92	8	78	6	83
TMR_00571	tmRNA links to Rfam database...	0.22	0.22	0.22	22	60624	87	13	67	7	77
TMR_00576	tmRNA links to Rfam database...	0.18	0.19	0.18	19	60275	89	11	73	5	83
TMR_00579	tmRNA links to Rfam database...	0.11	0.13	0.10	12	80481	116	23	85	8	78
TMR_00580	tmRNA links to Rfam database...	0.27	0.26	0.29	26	60635	70	14	51	5	74
TMR_00581	tmRNA links to Rfam database...	0.09	0.09	0.09	9	62381	98	11	80	7	89
TMR_00584	tmRNA links to Rfam database...	0.38	0.40	0.37	39	60969	74	8	59	7	58
TMR_00586	tmRNA links to Rfam database...	0.38	0.38	0.37	37	60976	69	12	50	7	60
TMR_00587	tmRNA links to Rfam database...	0.34	0.34	0.34	34	61326	66	8	57	1	66
TMR_00588	tmRNA links to Rfam database...	0.24	0.25	0.24	25	77318	87	17	61	9	76
TMR_00594	tmRNA links to Rfam database...	0.21	0.21	0.22	22	79299	85	13	67	5	82
TMR_00596	tmRNA links to Rfam database...	0.12	0.13	0.12	12	78106	104	17	75	12	83
TMR_00599	tmRNA links to Rfam database...	0.16	0.18	0.14	13	63096	91	30	51	10	59
TMR_00600	tmRNA links to Rfam database...	0.14	0.14	0.15	16	79690	96	14	80	2	99
TMR_00601	tmRNA links to Rfam database...	0.54	0.55	0.53	23	58953	80	2	18	60	19
TMR_00603	tmRNA links to Rfam database...	0.67	0.67	0.66	29	60334	75	6	9	60	14
TMR_00604	tmRNA links to Rfam database...	0.42	0.40	0.45	45	62734	59	7	49	3	67
TMR_00605	tmRNA links to Rfam database...	0.32	0.32	0.32	35	74196	75	26	48	1	73
TMR_00606	tmRNA links to Rfam database...	0.28	0.29	0.27	31	68893	87	10	72	5	76
TMR_00609	tmRNA links to Rfam database...	0.53	0.53	0.54	60	63435	53	8	43	2	53
TMR_00610	tmRNA links to Rfam database...	0.46	0.45	0.48	47	62030	63	7	44	12	57
TMR_00611	tmRNA links to Rfam database...	0.42	0.43	0.41	44	61318	63	14	49	0	58
TMR_00612	tmRNA links to Rfam database...	0.34	0.35	0.34	36	60619	72	9	62	1	68
TMR_00614	tmRNA links to Rfam database...	0.28	0.27	0.29	28	60978	75	5	64	6	76
TMR_00615	tmRNA links to Rfam database...	0.30	0.30	0.30	29	63807	77	16	51	10	67
TMR_00616	tmRNA links to Rfam database...	0.45	0.44	0.46	44	67065	58	11	41	6	55
TMR_00617	tmRNA links to Rfam database...	0.31	0.33	0.29	19	34650	57	13	34	10	39
TMR_00623	tmRNA links to Rfam database...	0.42	0.40	0.44	43	61328	63	1	53	9	65
TMR_00624	tmRNA links to Rfam database...	0.34	0.33	0.35	36	62378	79	5	62	12	72
TMR_00625	tmRNA links to Rfam database...	0.19	0.20	0.18	21	78886	103	23	73	7	85
TMR_00626	tmRNA links to Rfam database...	0.27	0.28	0.27	30	67783	87	15	68	4	79
TMR_00680	tmRNA links to Rfam database...	0.18	0.19	0.17	19	67785	92	23	69	0	80
TMR_00681	tmRNA links to Rfam database...	0.29	0.29	0.29	28	65968	79	5	65	9	69
TMR_00683	tmRNA links to Rfam database...	0.25	0.27	0.24	27	82915	89	20	66	3	73
TMR_00686	tmRNA links to Rfam database...	0.46	0.46	0.45	50	71143	72	15	45	12	58
TMR_00687	tmRNA links to Rfam database...	0.42	0.41	0.43	46	71523	74	11	51	12	65
TMR_00696	tmRNA links to Rfam database...	0.21	0.22	0.21	25	84960	107	11	82	14	89
TMR_00698	tmRNA links to Rfam database...	0.36	0.36	0.36	37	63088	68	17	48	3	67
TMR_00699	tmRNA links to Rfam database...	0.27	0.25	0.30	26	67073	66	7	55	4	76
TMR_00702	tmRNA links to Rfam database...	0.26	0.26	0.27	26	67063	77	11	61	5	74
TMR_00703	tmRNA links to Rfam database...	0.29	0.28	0.31	28	67437	67	14	49	4	71
TMR_00706	tmRNA links to Rfam database...	0.32	0.32	0.32	33	66326	76	6	65	5	70
TMR_00711	tmRNA links to Rfam database...	0.47	0.47	0.47	46	67799	58	13	38	7	52
TMR_00712	tmRNA links to Rfam database...	0.20	0.20	0.19	22	78492	95	12	80	3	87
TMR_00716	tmRNA links to Rfam database...	0.13	0.13	0.12	13	62730	92	17	75	0	87

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of RNAsubopt - scored higher in this pairwise comparison

1. Total counts & total scores for RNAsubopt

2. Individual counts for RNAsubopt [ download as .csv ]

Performance of RNAshapes - scored lower in this pairwise comparison

1. Total counts & total scores for RNAshapes

2. Individual counts for RNAshapes [ download as .csv ]