CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

Home

Methods

Datasets

Rankings

RNA 2D Atlas

Help

FAQ

Contact us

RSS feeds

Twitter

Overview

Metric	Sfold		Mastr(seed)
MCC	0.581	>	0.000
Average MCC ± 95% Confidence Intervals	0.575 ± 0.019	>	0.000 ± 0.000
Sensitivity	0.518	>	0.000
Positive Predictive Value	0.653	>	0.000
Total TP	13695	>	0
Total TN	16083872	<	16104847
Total FP	8978	>	0
Total FP CONTRA	976	>	0
Total FP INCONS	6304	>	0
Total FP COMP	1698	>	0
Total FN	12719	<	26414
P-value	3.56938820447e-08

^top

Performance plots

Comparison of performance of Sfold and Mastr(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Sfold and Mastr(seed)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Sfold and Mastr(seed)).
Comparison of average Matthews Correlation Coefficients (MCCs) for Sfold and Mastr(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Sfold and Mastr(seed)).

^top

Performance of Sfold - scored higher in this pairwise comparison

1. Total counts & total scores for Sfold

Total Base Pair Counts
Total TP	13695
Total TN	16083872
Total FP	8978
Total FP CONTRA	976
Total FP INCONS	6304
Total FP COMP	1698
Total FN	12719

Total Scores
MCC	0.581
Average MCC ± 95% Confidence Intervals	0.575 ± 0.019
Sensitivity	0.518
Positive Predictive Value	0.653
Nr of predictions	258

^top

2. Individual counts for Sfold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.64	0.61	0.67	46	34122	27	3	20	4	29
ASE_00002	RNaseP_arch links to Rfam database...	0.69	0.60	0.80	44	35456	16	2	9	5	29
ASE_00004	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.83	64	47818	13	7	6	0	33
ASE_00005	RNaseP_bact_a links to Rfam database...	0.69	0.58	0.83	68	57888	18	0	14	4	49
ASE_00006	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.85	58	47518	12	1	9	2	35
ASE_00009	RNaseP_arch links to Rfam database...	0.78	0.75	0.82	50	26045	12	0	11	1	17
ASE_00012	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.80	66	73838	21	2	14	5	57
ASE_00014	RNaseP_arch links to Rfam database...	0.25	0.25	0.26	26	54184	76	8	67	1	80
ASE_00017	RNaseP_nuc links to Rfam database...	0.27	0.25	0.29	16	50984	48	3	37	8	48
ASE_00018	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.91	98	80493	11	0	10	1	36
ASE_00020	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.66	65	73822	33	6	27	0	61
ASE_00021	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.86	82	104101	18	0	13	5	78
ASE_00022	RNaseP_bact_b links to Rfam database...	0.50	0.46	0.54	57	82922	56	3	46	7	67
ASE_00025	RNaseP_nuc links to Rfam database...	0.36	0.30	0.45	21	78559	74	3	23	48	50
ASE_00026	RNaseP_bact_a links to Rfam database...	0.63	0.53	0.74	58	59607	27	0	20	7	52
ASE_00028	RNaseP_bact_b links to Rfam database...	0.61	0.55	0.67	69	84563	43	1	33	9	57
ASE_00029	RNaseP_bact_a links to Rfam database...	0.58	0.49	0.67	60	82939	30	3	26	1	62
ASE_00032	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.68	65	80104	34	3	28	3	53
ASE_00035	RNaseP_bact_a links to Rfam database...	0.35	0.28	0.45	33	70426	45	8	33	4	85
ASE_00036	RNaseP_bact_a links to Rfam database...	0.55	0.46	0.66	61	75762	35	5	27	3	71
ASE_00037	RNaseP_bact_a links to Rfam database...	0.55	0.49	0.61	54	59252	34	0	34	0	56
ASE_00038	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	54	53529	47	4	41	2	47
ASE_00041	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.62	56	57539	37	2	33	2	52
ASE_00042	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.64	75	89983	43	3	39	1	70
ASE_00044	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.78	73	54521	26	3	18	5	32
ASE_00046	RNaseP_bact_a links to Rfam database...	0.65	0.54	0.79	56	50332	16	1	14	1	47
ASE_00047	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.43	49	74191	66	5	60	1	81
ASE_00052	RNaseP_bact_a links to Rfam database...	0.57	0.47	0.69	53	61348	28	1	23	4	59
ASE_00053	RNaseP_bact_a links to Rfam database...	0.55	0.48	0.64	64	79301	39	2	34	3	69
ASE_00064	RNaseP_bact_a links to Rfam database...	0.52	0.44	0.61	39	45387	31	1	24	6	50
ASE_00068	RNaseP_bact_a links to Rfam database...	0.48	0.39	0.59	33	37619	24	2	21	1	52
ASE_00069	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.71	91	82900	41	5	32	4	49
ASE_00074	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.64	68	67790	38	3	35	0	51
ASE_00076	RNaseP_bact_a links to Rfam database...	0.65	0.57	0.74	67	68175	26	2	21	3	51
ASE_00077	RNaseP_bact_a links to Rfam database...	0.57	0.49	0.66	42	45086	22	6	16	0	44
ASE_00078	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	49	43002	21	1	19	1	34
ASE_00079	RNaseP_bact_a links to Rfam database...	0.59	0.49	0.72	49	55543	19	2	17	0	51
ASE_00081	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.69	51	49696	24	0	23	1	46
ASE_00082	RNaseP_bact_a links to Rfam database...	0.73	0.61	0.87	71	70418	23	0	11	12	45
ASE_00084	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.81	68	53544	19	3	13	3	31
ASE_00090	RNaseP_bact_a links to Rfam database...	0.66	0.58	0.74	59	55531	22	1	20	1	42
ASE_00092	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.89	82	63454	12	3	7	2	31
ASE_00096	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.59	65	63436	47	3	42	2	50
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	60	64506	56	6	48	2	60
ASE_00100	RNaseP_nuc links to Rfam database...	0.35	0.29	0.42	22	82162	73	3	28	42	54
ASE_00102	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.48	68	117714	76	7	66	3	98
ASE_00104	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.75	67	64172	24	2	20	2	52
ASE_00105	RNaseP_bact_a links to Rfam database...	0.45	0.40	0.52	44	64176	44	5	36	3	67
ASE_00108	RNaseP_nuc links to Rfam database...	0.54	0.51	0.57	32	46915	55	6	18	31	31
ASE_00111	RNaseP_nuc links to Rfam database...	0.31	0.32	0.31	18	50028	45	15	25	5	39
ASE_00112	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	85	75366	22	5	10	7	31
ASE_00116	RNaseP_arch links to Rfam database...	0.22	0.17	0.31	11	31590	28	0	25	3	55
ASE_00118	RNaseP_bact_a links to Rfam database...	0.52	0.46	0.59	47	60647	34	3	29	2	55
ASE_00119	RNaseP_bact_a links to Rfam database...	0.87	0.82	0.92	89	62738	9	1	7	1	19
ASE_00120	RNaseP_arch links to Rfam database...	0.61	0.53	0.69	50	46899	22	4	18	0	44
ASE_00121	RNaseP_arch links to Rfam database...	0.37	0.25	0.55	23	45108	19	2	17	0	69
ASE_00123	RNaseP_bact_a links to Rfam database...	0.34	0.28	0.41	24	38444	39	3	32	4	61
ASE_00125	RNaseP_bact_a links to Rfam database...	0.71	0.58	0.88	51	39282	7	0	7	0	37
ASE_00126	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	65	40396	13	1	8	4	17
ASE_00129	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.56	52	62742	44	2	39	3	59
ASE_00131	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.86	43	39290	16	0	7	9	42
ASE_00132	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	60	50317	28	4	22	2	35
ASE_00135	RNaseP_bact_a links to Rfam database...	0.50	0.45	0.56	49	63103	42	0	38	4	60
ASE_00138	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	42	40392	38	4	32	2	39
ASE_00142	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.76	66	67074	23	3	18	2	56
ASE_00145	RNaseP_arch links to Rfam database...	0.47	0.42	0.53	47	70036	48	4	38	6	64
ASE_00146	RNaseP_bact_a links to Rfam database...	0.47	0.36	0.62	45	70803	29	1	27	1	79
ASE_00148	RNaseP_arch links to Rfam database...	0.72	0.66	0.78	102	112445	30	1	27	2	52
ASE_00151	RNaseP_bact_a links to Rfam database...	0.33	0.28	0.40	27	51935	41	5	36	0	71
ASE_00153	RNaseP_nuc links to Rfam database...	0.69	0.67	0.70	49	57560	61	2	19	40	24
ASE_00154	RNaseP_arch links to Rfam database...	0.67	0.63	0.72	67	65248	29	2	24	3	40
ASE_00155	RNaseP_arch links to Rfam database...	0.64	0.51	0.80	73	93437	21	3	15	3	69
ASE_00168	RNaseP_nuc links to Rfam database...	0.27	0.30	0.24	19	60648	76	18	41	17	45
ASE_00169	RNaseP_bact_a links to Rfam database...	0.65	0.53	0.80	57	57220	15	0	14	1	50
ASE_00170	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.76	50	48762	19	2	14	3	43
ASE_00171	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.62	56	48426	36	7	27	2	38
ASE_00172	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	65	58924	7	2	5	0	41
ASE_00176	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.70	61	59944	29	4	22	3	49
ASE_00179	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.63	55	44166	33	7	25	1	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.75	68	51269	29	2	21	6	32
ASE_00181	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	57	57528	51	3	42	6	49
ASE_00182	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.57	67	84137	51	3	48	0	69
ASE_00183	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.75	80	61319	30	0	26	4	33
ASE_00184	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.76	64	54531	21	3	17	1	38
ASE_00185	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	89	73432	21	3	12	6	39
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	92	78884	33	3	24	6	40
ASE_00187	RNaseP_arch links to Rfam database...	0.47	0.43	0.53	49	68542	48	5	39	4	66
ASE_00189	RNaseP_bact_b links to Rfam database...	0.55	0.44	0.69	45	63125	24	2	18	4	57
ASE_00190	RNaseP_bact_b links to Rfam database...	0.65	0.46	0.93	41	45407	5	0	3	2	49
ASE_00192	RNaseP_bact_b links to Rfam database...	0.33	0.27	0.40	36	84575	61	6	49	6	97
ASE_00194	RNaseP_bact_b links to Rfam database...	0.49	0.45	0.52	54	73433	53	7	42	4	65
ASE_00196	RNaseP_arch links to Rfam database...	0.79	0.77	0.81	58	31554	17	2	12	3	17
ASE_00197	RNaseP_bact_a links to Rfam database...	0.58	0.51	0.66	74	89141	44	1	37	6	71
ASE_00198	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.64	63	52552	35	6	29	0	39
ASE_00203	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	59	46595	11	4	7	0	37
ASE_00204	RNaseP_bact_b links to Rfam database...	0.58	0.41	0.81	46	67839	17	0	11	6	66
ASE_00205	RNaseP_arch links to Rfam database...	0.51	0.43	0.59	39	45990	30	2	25	3	51
ASE_00209	RNaseP_arch links to Rfam database...	0.41	0.38	0.46	33	42999	39	5	34	0	55
ASE_00210	RNaseP_arch links to Rfam database...	0.59	0.60	0.59	39	27195	27	6	21	0	26
ASE_00212	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.79	100	93835	30	2	24	4	48
ASE_00213	RNaseP_arch links to Rfam database...	0.69	0.62	0.76	41	27207	13	1	12	0	25
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.82	79	56184	22	3	14	5	24
ASE_00215	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	50	48432	37	4	30	3	49
ASE_00216	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.76	53	39270	17	5	12	0	29
ASE_00217	RNaseP_bact_a links to Rfam database...	0.44	0.34	0.57	31	40416	26	1	22	3	59
ASE_00221	RNaseP_bact_a links to Rfam database...	0.57	0.44	0.73	52	64549	22	1	18	3	65
ASE_00222	RNaseP_arch links to Rfam database...	0.69	0.59	0.79	93	111984	24	3	21	0	64
ASE_00227	RNaseP_bact_a links to Rfam database...	0.33	0.30	0.35	40	78890	73	6	67	0	93
ASE_00228	RNaseP_bact_a links to Rfam database...	0.69	0.62	0.78	53	46903	15	11	4	0	33
ASE_00229	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.66	52	42407	28	8	19	1	35
ASE_00231	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.66	61	47802	33	5	27	1	35
ASE_00232	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.69	51	38429	25	3	20	2	33
ASE_00234	RNaseP_bact_a links to Rfam database...	0.56	0.45	0.69	58	75382	30	1	25	4	71
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45703	67	18	32	17	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	54	64155	56	1	51	4	60
ASE_00240	RNaseP_bact_a links to Rfam database...	0.67	0.60	0.76	56	46591	23	0	18	5	37
ASE_00241	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.88	43	43907	7	0	6	1	44
ASE_00242	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.81	67	60992	18	0	16	2	45
ASE_00246	RNaseP_nuc links to Rfam database...	0.20	0.12	0.33	8	48181	20	5	11	4	59
ASE_00247	RNaseP_nuc links to Rfam database...	0.32	0.28	0.36	18	54235	68	4	28	36	46
ASE_00248	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.70	62	62393	30	1	25	4	52
ASE_00250	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.73	72	78905	31	7	19	5	59
ASE_00254	RNaseP_bact_a links to Rfam database...	0.80	0.66	0.98	54	36801	1	0	1	0	28
ASE_00255	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.78	86	74581	25	3	21	1	44
ASE_00257	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.90	54	50980	6	0	6	0	43
ASE_00259	RNaseP_bact_a links to Rfam database...	0.53	0.42	0.66	51	73076	28	4	22	2	70
ASE_00263	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.77	75	70403	23	5	17	1	45
ASE_00264	RNaseP_nuc links to Rfam database...	0.55	0.51	0.59	51	49054	41	1	35	5	49
ASE_00267	RNaseP_bact_a links to Rfam database...	0.54	0.35	0.84	31	45113	10	0	6	4	57
ASE_00270	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.69	85	72267	40	6	32	2	43
ASE_00274	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.54	49	55521	41	8	33	0	54
ASE_00277	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	40	48121	44	8	36	0	51
ASE_00279	RNaseP_bact_a links to Rfam database...	0.71	0.53	0.95	54	53244	4	0	3	1	47
ASE_00280	RNaseP_bact_a links to Rfam database...	0.65	0.57	0.75	56	51928	20	2	17	1	42
ASE_00281	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.94	49	44499	9	0	3	6	39
ASE_00282	RNaseP_bact_a links to Rfam database...	0.55	0.47	0.64	60	77721	35	1	33	1	67
ASE_00283	RNaseP_bact_a links to Rfam database...	0.51	0.42	0.63	45	61704	30	3	24	3	62
ASE_00284	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.67	66	58213	39	2	30	7	42
ASE_00285	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	82	68900	32	0	24	8	40
ASE_00286	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	39	46580	52	3	43	6	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	70	54856	26	2	18	6	33
ASE_00288	RNaseP_bact_a links to Rfam database...	0.33	0.29	0.38	27	45984	46	3	42	1	66
ASE_00289	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.91	102	100913	14	2	8	4	55
ASE_00292	RNaseP_bact_a links to Rfam database...	0.68	0.61	0.76	84	81699	30	2	25	3	54
ASE_00294	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	123	114343	17	2	13	2	48
ASE_00295	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.63	65	73817	40	4	34	2	66
ASE_00296	RNaseP_bact_a links to Rfam database...	0.24	0.22	0.27	32	91686	89	8	80	1	113
ASE_00297	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.75	49	52910	16	1	15	0	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.61	0.52	0.70	59	67444	27	4	21	2	54
ASE_00299	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.61	50	49373	37	5	27	5	50
ASE_00313	RNaseP_nuc links to Rfam database...	0.71	0.66	0.76	59	62403	36	4	15	17	30
ASE_00316	RNaseP_nuc links to Rfam database...	0.61	0.54	0.70	53	107804	52	4	19	29	45
ASE_00318	RNaseP_bact_b links to Rfam database...	0.64	0.56	0.74	66	80111	27	7	16	4	52
ASE_00327	RNaseP_nuc links to Rfam database...	0.82	0.79	0.85	70	57209	27	3	9	15	19
ASE_00328	RNaseP_bact_b links to Rfam database...	0.45	0.41	0.48	46	72676	54	3	46	5	66
ASE_00330	RNaseP_nuc links to Rfam database...	0.77	0.73	0.80	66	56198	33	0	16	17	24
ASE_00332	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	70	81683	58	2	55	1	68
ASE_00335	RNaseP_bact_b links to Rfam database...	0.55	0.45	0.68	52	75390	30	3	21	6	64
ASE_00337	RNaseP_nuc links to Rfam database...	0.61	0.54	0.69	38	39285	29	0	17	12	33
ASE_00338	RNaseP_nuc links to Rfam database...	0.64	0.59	0.69	58	66346	42	5	21	16	40
ASE_00339	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.52	56	80093	63	3	48	12	63
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.77	62	45975	25	6	13	6	23
ASE_00342	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.78	65	62398	19	0	18	1	50
ASE_00343	RNaseP_bact_a links to Rfam database...	0.49	0.44	0.55	50	83345	56	5	36	15	63
ASE_00346	RNaseP_arch links to Rfam database...	0.36	0.33	0.40	32	48125	51	4	44	3	65
ASE_00353	RNaseP_bact_a links to Rfam database...	0.59	0.48	0.74	51	57901	20	2	16	2	56
ASE_00359	RNaseP_arch links to Rfam database...	0.50	0.49	0.52	39	42703	43	3	33	7	41
ASE_00360	RNaseP_arch links to Rfam database...	0.35	0.29	0.41	19	29357	30	3	24	3	46
ASE_00361	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	60	75353	57	6	47	4	67
ASE_00362	RNaseP_bact_a links to Rfam database...	0.66	0.60	0.71	55	48128	25	3	19	3	36
ASE_00363	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	51	51275	35	1	33	1	43
ASE_00364	RNaseP_bact_a links to Rfam database...	0.38	0.33	0.43	35	54204	47	4	42	1	70
ASE_00366	RNaseP_bact_a links to Rfam database...	0.58	0.59	0.57	58	58552	45	9	34	2	40
ASE_00367	RNaseP_bact_a links to Rfam database...	0.43	0.38	0.49	33	43004	34	4	30	0	53
ASE_00369	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.82	73	55856	17	1	15	1	34
ASE_00370	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.74	53	41833	20	1	18	1	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.77	69	51913	26	4	17	5	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.42	33	44771	46	10	36	0	55
ASE_00375	RNaseP_bact_a links to Rfam database...	0.71	0.54	0.95	59	60316	5	0	3	2	51
ASE_00376	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	57	56858	43	3	35	5	48
ASE_00377	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	72	57531	33	4	23	6	35
ASE_00379	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.82	49	45996	20	2	9	9	40
ASE_00380	RNaseP_bact_a links to Rfam database...	0.53	0.40	0.69	40	54888	23	0	18	5	59
ASE_00382	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.63	45	41833	30	6	21	3	39
ASE_00383	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.63	56	54526	35	5	28	2	49
ASE_00384	RNaseP_bact_a links to Rfam database...	0.64	0.43	0.93	40	48473	7	0	3	4	52
ASE_00385	RNaseP_bact_a links to Rfam database...	0.53	0.43	0.65	35	41851	21	0	19	2	46
ASE_00386	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.61	51	50319	38	3	30	5	45
ASE_00387	RNaseP_bact_a links to Rfam database...	0.60	0.46	0.79	48	55884	17	1	12	4	56
ASE_00388	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	60	45676	20	0	17	3	29
ASE_00390	RNaseP_bact_a links to Rfam database...	0.71	0.58	0.88	49	42139	15	2	5	8	36
ASE_00393	RNaseP_bact_a links to Rfam database...	0.50	0.41	0.60	38	47832	32	1	24	7	55
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.84	72	46885	17	2	12	3	21
ASE_00395	RNaseP_bact_a links to Rfam database...	0.81	0.70	0.94	59	41553	8	0	4	4	25
ASE_00396	RNaseP_bact_a links to Rfam database...	0.47	0.37	0.60	31	41564	25	1	20	4	52
ASE_00397	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	43	54533	39	5	34	0	62
ASE_00398	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.74	67	55855	25	1	22	2	37
ASE_00400	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.82	71	57883	17	1	15	1	35
ASE_00401	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.53	70	76897	61	10	51	0	56
ASE_00402	RNaseP_bact_a links to Rfam database...	0.64	0.45	0.90	38	42444	7	0	4	3	47
ASE_00403	RNaseP_bact_a links to Rfam database...	0.57	0.45	0.73	48	55879	18	1	17	0	59
ASE_00404	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.71	46	43006	25	0	19	6	39
ASE_00406	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.79	63	48748	21	6	11	4	31
ASE_00411	RNaseP_bact_a links to Rfam database...	0.29	0.27	0.32	24	49379	53	6	46	1	65
ASE_00412	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.62	53	58225	33	8	25	0	52
ASE_00413	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	34	44474	43	13	30	0	47
ASE_00414	RNaseP_bact_a links to Rfam database...	0.31	0.26	0.37	25	46292	48	1	42	5	70
ASE_00415	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.68	55	54865	28	4	22	2	48
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77305	35	3	28	4	42
ASE_00417	RNaseP_arch links to Rfam database...	0.41	0.41	0.41	41	54516	61	7	51	3	59
ASE_00418	RNaseP_arch links to Rfam database...	0.34	0.27	0.44	20	38736	27	2	23	2	55
ASE_00419	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.77	75	54849	26	4	18	4	28
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.77	59	46894	25	0	18	7	35
ASE_00423	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.66	59	56864	32	4	26	2	50
ASE_00426	RNaseP_bact_a links to Rfam database...	0.46	0.40	0.53	43	60994	38	2	36	0	65
ASE_00428	RNaseP_bact_a links to Rfam database...	0.61	0.40	0.94	50	76583	4	0	3	1	75
ASE_00430	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.67	60	46882	35	5	24	6	37
ASE_00431	RNaseP_bact_a links to Rfam database...	0.55	0.49	0.60	47	46282	36	6	25	5	48
ASE_00434	RNaseP_bact_b links to Rfam database...	0.60	0.55	0.64	61	68170	42	5	29	8	49
ASE_00437	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.42	52	79277	73	5	67	1	83
ASE_00441	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.81	83	64159	25	3	16	6	29
ASE_00447	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.72	68	60283	32	1	26	5	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.23	0.22	0.24	25	64155	87	6	75	6	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.73	65	70787	24	2	22	0	60
CRW_00013	Intron_gpI links to Rfam database...	0.36	0.27	0.48	31	103675	57	8	26	23	84
CRW_00016	Intron_gpI links to Rfam database...	0.80	0.65	0.98	78	77341	14	0	2	12	42
CRW_00610	Intron_gpI links to Rfam database...	0.51	0.49	0.52	40	36238	37	9	28	0	41
CRW_00613	Intron_gpI links to Rfam database...	0.74	0.67	0.83	52	34917	19	0	11	8	26
CRW_00614	Intron_gpI links to Rfam database...	0.19	0.19	0.19	11	121713	102	12	35	55	46
CRW_00618	Intron_gpI links to Rfam database...	0.13	0.13	0.14	8	56223	68	13	36	19	53
CRW_00619	Intron_gpI links to Rfam database...	0.41	0.30	0.56	22	164986	76	2	15	59	51
CRW_00620	Intron_gpI links to Rfam database...	0.18	0.22	0.14	14	150874	138	30	57	51	49
CRW_00621	Intron_gpI links to Rfam database...	0.31	0.30	0.33	21	153118	131	6	36	89	50
CRW_00623	Intron_gpI links to Rfam database...	0.41	0.30	0.57	25	129751	78	2	17	59	58
CRW_00633	Intron_gpI links to Rfam database...	0.65	0.49	0.85	52	63485	11	2	7	2	54
CRW_00634	Intron_gpI links to Rfam database...	0.54	0.51	0.58	48	64537	40	6	29	5	46
CRW_00670	Intron_gpI links to Rfam database...	0.80	0.74	0.87	89	70023	15	6	7	2	31
CRW_00671	Intron_gpI links to Rfam database...	0.75	0.70	0.81	82	62734	23	5	14	4	35
CRW_00672	Intron_gpI links to Rfam database...	0.78	0.71	0.85	79	72297	20	6	8	6	32
CRW_00674	Intron_gpI links to Rfam database...	0.60	0.54	0.66	67	83335	36	6	28	2	57
CRW_00676	Intron_gpI links to Rfam database...	0.61	0.57	0.66	65	93430	48	9	24	15	50
CRW_00692	Intron_gpI links to Rfam database...	0.54	0.42	0.69	38	68580	27	6	11	10	52
PDB_00827	Intron_gpI links to Rfam database...	0.64	0.47	0.86	38	26984	8	0	6	2	43
PDB_00919	RNaseP_bact_a links to Rfam database...	0.55	0.48	0.64	49	44176	30	3	25	2	54
RFA_00597	Telomerase-vert links to Rfam database...	0.57	0.49	0.67	53	97824	46	4	22	20	56
RFA_00598	Telomerase-vert links to Rfam database...	0.62	0.54	0.71	55	84589	43	2	20	21	46
RFA_00599	Telomerase-vert links to Rfam database...	0.69	0.68	0.70	75	101368	52	8	24	20	36
RFA_00600	Telomerase-vert links to Rfam database...	0.55	0.57	0.52	57	120186	79	15	37	27	43
RFA_00601	Telomerase-vert links to Rfam database...	0.27	0.21	0.35	24	99167	52	9	35	8	90
RFA_00602	Telomerase-vert links to Rfam database...	0.54	0.53	0.55	62	101363	68	16	34	18	54
TMR_00173	tmRNA links to Rfam database...	0.31	0.36	0.28	15	42141	56	15	24	17	27
TMR_00357	tmRNA links to Rfam database...	0.44	0.40	0.48	37	82951	54	13	27	14	55
TMR_00431	tmRNA links to Rfam database...	0.73	0.67	0.79	37	51956	53	5	5	43	18
TMR_00601	tmRNA links to Rfam database...	0.38	0.17	0.88	7	58988	33	0	1	32	35
TMR_00603	tmRNA links to Rfam database...	0.68	0.65	0.72	28	60339	61	6	5	50	15
TMR_00611	tmRNA links to Rfam database...	0.62	0.59	0.65	60	61332	36	7	26	3	42
TMR_00686	tmRNA links to Rfam database...	0.46	0.45	0.47	49	71148	67	12	44	11	59
TMR_00696	tmRNA links to Rfam database...	0.14	0.11	0.16	13	84999	75	15	51	9	101

^top

Performance of Mastr(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for Mastr(seed)

Total Base Pair Counts
Total TP	0
Total TN	16104847
Total FP	0
Total FP CONTRA	0
Total FP INCONS	0
Total FP COMP	0
Total FN	26414

Total Scores
MCC	0.000
Average MCC ± 95% Confidence Intervals	0.000 ± 0.000
Sensitivity	0.000
Positive Predictive Value	0.000
Nr of predictions	258

^top

2. Individual counts for Mastr(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	34191	0	0	0	0	75
ASE_00002	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	35511	0	0	0	0	73
ASE_00004	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	97
ASE_00005	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	117
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47586	0	0	0	0	93
ASE_00009	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	26106	0	0	0	0	67
ASE_00012	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73920	0	0	0	0	123
ASE_00014	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	106
ASE_00017	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	51040	0	0	0	0	64
ASE_00018	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80601	0	0	0	0	134
ASE_00020	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73920	0	0	0	0	126
ASE_00021	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	104196	0	0	0	0	160
ASE_00022	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	83028	0	0	0	0	124
ASE_00025	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	78606	0	0	0	0	71
ASE_00026	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59685	0	0	0	0	110
ASE_00028	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84666	0	0	0	0	126
ASE_00029	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83028	0	0	0	0	122
ASE_00032	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80200	0	0	0	0	118
ASE_00035	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	118
ASE_00036	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75855	0	0	0	0	132
ASE_00037	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59340	0	0	0	0	110
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53628	0	0	0	0	101
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	108
ASE_00042	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	90100	0	0	0	0	145
ASE_00044	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00046	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50403	0	0	0	0	103
ASE_00047	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	74305	0	0	0	0	130
ASE_00052	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61425	0	0	0	0	112
ASE_00053	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79401	0	0	0	0	133
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	89
ASE_00068	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	37675	0	0	0	0	85
ASE_00069	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83028	0	0	0	0	140
ASE_00074	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67896	0	0	0	0	119
ASE_00076	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	68265	0	0	0	0	118
ASE_00077	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	86
ASE_00078	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	83
ASE_00079	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55611	0	0	0	0	100
ASE_00081	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49770	0	0	0	0	97
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	116
ASE_00084	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53628	0	0	0	0	99
ASE_00090	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55611	0	0	0	0	101
ASE_00092	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63546	0	0	0	0	113
ASE_00096	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63546	0	0	0	0	115
ASE_00099	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64620	0	0	0	0	120
ASE_00100	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	82215	0	0	0	0	76
ASE_00102	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	117855	0	0	0	0	166
ASE_00104	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	119
ASE_00105	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	111
ASE_00108	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	63
ASE_00111	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	50086	0	0	0	0	57
ASE_00112	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75466	0	0	0	0	116
ASE_00116	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	31626	0	0	0	0	66
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60726	0	0	0	0	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	108
ASE_00120	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	94
ASE_00121	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	92
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	82
ASE_00129	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	111
ASE_00131	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	85
ASE_00132	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50403	0	0	0	0	95
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63190	0	0	0	0	109
ASE_00138	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	81
ASE_00142	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67161	0	0	0	0	122
ASE_00145	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	70125	0	0	0	0	111
ASE_00146	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70876	0	0	0	0	124
ASE_00148	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	112575	0	0	0	0	154
ASE_00151	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52003	0	0	0	0	98
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	73
ASE_00154	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	65341	0	0	0	0	107
ASE_00155	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	93528	0	0	0	0	142
ASE_00168	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	60726	0	0	0	0	64
ASE_00169	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57291	0	0	0	0	107
ASE_00170	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48828	0	0	0	0	93
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58996	0	0	0	0	106
ASE_00176	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60031	0	0	0	0	110
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44253	0	0	0	0	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51360	0	0	0	0	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	106
ASE_00182	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84255	0	0	0	0	136
ASE_00183	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61425	0	0	0	0	113
ASE_00184	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	102
ASE_00185	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73536	0	0	0	0	128
ASE_00186	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79003	0	0	0	0	132
ASE_00187	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	68635	0	0	0	0	115
ASE_00189	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	63190	0	0	0	0	102
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	90
ASE_00192	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84666	0	0	0	0	133
ASE_00194	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	73536	0	0	0	0	119
ASE_00196	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	31626	0	0	0	0	75
ASE_00197	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	89253	0	0	0	0	145
ASE_00198	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52650	0	0	0	0	102
ASE_00203	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46665	0	0	0	0	96
ASE_00204	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	67896	0	0	0	0	112
ASE_00205	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	90
ASE_00209	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	88
ASE_00210	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	27261	0	0	0	0	65
ASE_00212	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	93961	0	0	0	0	148
ASE_00213	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	27261	0	0	0	0	66
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56280	0	0	0	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	99
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	90
ASE_00221	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64620	0	0	0	0	117
ASE_00222	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	112101	0	0	0	0	157
ASE_00227	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79003	0	0	0	0	133
ASE_00228	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	86
ASE_00229	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42486	0	0	0	0	87
ASE_00231	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	96
ASE_00232	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	84
ASE_00234	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75466	0	0	0	0	129
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45753	0	0	0	0	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	114
ASE_00240	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46665	0	0	0	0	93
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43956	0	0	0	0	87
ASE_00242	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	112
ASE_00246	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	67
ASE_00247	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	64
ASE_00248	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62481	0	0	0	0	114
ASE_00250	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79003	0	0	0	0	131
ASE_00254	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	36856	0	0	0	0	82
ASE_00255	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	74691	0	0	0	0	130
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51040	0	0	0	0	97
ASE_00259	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73153	0	0	0	0	121
ASE_00263	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	120
ASE_00264	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	49141	0	0	0	0	100
ASE_00267	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	88
ASE_00270	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	72390	0	0	0	0	128
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55611	0	0	0	0	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	91
ASE_00279	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53301	0	0	0	0	101
ASE_00280	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52003	0	0	0	0	98
ASE_00281	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44551	0	0	0	0	88
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77815	0	0	0	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61776	0	0	0	0	107
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58311	0	0	0	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	69006	0	0	0	0	122
ASE_00286	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46665	0	0	0	0	92
ASE_00287	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54946	0	0	0	0	103
ASE_00288	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	93
ASE_00289	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	101025	0	0	0	0	157
ASE_00292	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	81810	0	0	0	0	138
ASE_00294	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	114481	0	0	0	0	171
ASE_00295	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73920	0	0	0	0	131
ASE_00296	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	91806	0	0	0	0	145
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52975	0	0	0	0	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67528	0	0	0	0	113
ASE_00299	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49455	0	0	0	0	100
ASE_00313	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	62481	0	0	0	0	89
ASE_00316	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	107880	0	0	0	0	98
ASE_00318	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	80200	0	0	0	0	118
ASE_00327	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57291	0	0	0	0	89
ASE_00328	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	72771	0	0	0	0	112
ASE_00330	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	56280	0	0	0	0	90
ASE_00332	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	81810	0	0	0	0	138
ASE_00335	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	75466	0	0	0	0	116
ASE_00337	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	71
ASE_00338	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	66430	0	0	0	0	98
ASE_00339	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80200	0	0	0	0	119
ASE_00340	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	85
ASE_00342	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62481	0	0	0	0	115
ASE_00343	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83436	0	0	0	0	113
ASE_00346	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	97
ASE_00353	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	107
ASE_00359	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	42778	0	0	0	0	80
ASE_00360	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	29403	0	0	0	0	65
ASE_00361	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75466	0	0	0	0	127
ASE_00362	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	91
ASE_00363	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51360	0	0	0	0	94
ASE_00364	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	105
ASE_00366	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58653	0	0	0	0	98
ASE_00367	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	86
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00372	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52003	0	0	0	0	100
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44850	0	0	0	0	88
ASE_00375	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60378	0	0	0	0	110
ASE_00376	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56953	0	0	0	0	105
ASE_00377	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	107
ASE_00379	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	89
ASE_00380	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54946	0	0	0	0	99
ASE_00382	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00383	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00384	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	92
ASE_00385	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	81
ASE_00386	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50403	0	0	0	0	96
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45753	0	0	0	0	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42195	0	0	0	0	85
ASE_00393	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	93
ASE_00394	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	93
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41616	0	0	0	0	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41616	0	0	0	0	83
ASE_00397	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00398	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	104
ASE_00400	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	106
ASE_00401	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77028	0	0	0	0	126
ASE_00402	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42486	0	0	0	0	85
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	85
ASE_00406	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48828	0	0	0	0	94
ASE_00411	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49455	0	0	0	0	89
ASE_00412	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58311	0	0	0	0	105
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44551	0	0	0	0	81
ASE_00414	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46360	0	0	0	0	95
ASE_00415	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54946	0	0	0	0	103
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77421	0	0	0	0	127
ASE_00417	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	100
ASE_00418	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	38781	0	0	0	0	75
ASE_00419	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54946	0	0	0	0	103
ASE_00422	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	94
ASE_00423	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56953	0	0	0	0	109
ASE_00426	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	108
ASE_00428	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	76636	0	0	0	0	125
ASE_00430	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	97
ASE_00431	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46360	0	0	0	0	95
ASE_00434	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	68265	0	0	0	0	110
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79401	0	0	0	0	135
ASE_00441	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	112
ASE_00447	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60378	0	0	0	0	116
ASE_00448	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	112
ASE_00451	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70876	0	0	0	0	125
CRW_00013	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	103740	0	0	0	0	115
CRW_00016	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	77421	0	0	0	0	120
CRW_00610	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	36315	0	0	0	0	81
CRW_00613	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	34980	0	0	0	0	78
CRW_00614	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	121771	0	0	0	0	57
CRW_00618	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	56280	0	0	0	0	61
CRW_00619	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	165025	0	0	0	0	73
CRW_00620	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	150975	0	0	0	0	63
CRW_00621	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	153181	0	0	0	0	71
CRW_00623	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	129795	0	0	0	0	83
CRW_00633	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	63546	0	0	0	0	106
CRW_00634	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	64620	0	0	0	0	94
CRW_00670	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	70125	0	0	0	0	120
CRW_00671	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	117
CRW_00672	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	72390	0	0	0	0	111
CRW_00674	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	83436	0	0	0	0	124
CRW_00676	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	93528	0	0	0	0	115
CRW_00692	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	68635	0	0	0	0	90
PDB_00827	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	27028	0	0	0	0	81
PDB_00919	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44253	0	0	0	0	103
RFA_00597	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	97903	0	0	0	0	109
RFA_00598	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	84666	0	0	0	0	101
RFA_00599	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	111
RFA_00600	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	120295	0	0	0	0	100
RFA_00601	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	99235	0	0	0	0	114
RFA_00602	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	116
TMR_00173	tmRNA links to Rfam database...	0.00	0.00	0.00	0	42195	0	0	0	0	42
TMR_00357	tmRNA links to Rfam database...	0.00	0.00	0.00	0	83028	0	0	0	0	92
TMR_00431	tmRNA links to Rfam database...	0.00	0.00	0.00	0	52003	0	0	0	0	55
TMR_00601	tmRNA links to Rfam database...	0.00	0.00	0.00	0	58996	0	0	0	0	42
TMR_00603	tmRNA links to Rfam database...	0.00	0.00	0.00	0	60378	0	0	0	0	43
TMR_00611	tmRNA links to Rfam database...	0.00	0.00	0.00	0	61425	0	0	0	0	102
TMR_00686	tmRNA links to Rfam database...	0.00	0.00	0.00	0	71253	0	0	0	0	108
TMR_00696	tmRNA links to Rfam database...	0.00	0.00	0.00	0	85078	0	0	0	0	114

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Sfold - scored higher in this pairwise comparison

1. Total counts & total scores for Sfold

2. Individual counts for Sfold [ download as .csv ]

Performance of Mastr(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for Mastr(seed)

2. Individual counts for Mastr(seed) [ download as .csv ]