CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

Home

Methods

Datasets

Rankings

RNA 2D Atlas

Help

FAQ

Contact us

RSS feeds

Twitter

Overview

Metric	TurboFold(20)		PknotsRG
MCC	0.740	>	0.512
Average MCC ± 95% Confidence Intervals	0.739 ± 0.012	>	0.511 ± 0.021
Sensitivity	0.685	>	0.503
Positive Predictive Value	0.801	>	0.523
Total TP	14660	>	10780
Total TN	12415696	>	12413400
Total FP	4796	<	10748
Total FP CONTRA	517	<	1312
Total FP INCONS	3133	<	8514
Total FP COMP	1146	>	922
Total FN	6755	<	10635
P-value	3.56938820447e-08

^top

Performance plots

Comparison of performance of TurboFold(20) and PknotsRG. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for TurboFold(20) and PknotsRG).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for TurboFold(20) and PknotsRG).
Comparison of average Matthews Correlation Coefficients (MCCs) for TurboFold(20) and PknotsRG. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for TurboFold(20) and PknotsRG).

^top

Performance of TurboFold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for TurboFold(20)

Total Base Pair Counts
Total TP	14660
Total TN	12415696
Total FP	4796
Total FP CONTRA	517
Total FP INCONS	3133
Total FP COMP	1146
Total FN	6755

Total Scores
MCC	0.740
Average MCC ± 95% Confidence Intervals	0.739 ± 0.012
Sensitivity	0.685
Positive Predictive Value	0.801
Nr of predictions	204

^top

2. Individual counts for TurboFold(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.83	76	47803	17	5	11	1	21
ASE_00005	RNaseP_bact_a links to Rfam database...	0.85	0.76	0.95	89	57876	10	1	4	5	28
ASE_00006	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.81	72	47497	19	3	14	2	21
ASE_00007	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.80	78	59588	26	1	18	7	32
ASE_00012	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.84	84	73820	22	3	13	6	39
ASE_00018	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.90	105	80484	14	1	11	2	29
ASE_00020	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.79	81	73817	24	2	20	2	45
ASE_00021	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.85	106	104071	26	1	18	7	54
ASE_00022	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.84	86	82926	22	3	13	6	38
ASE_00028	RNaseP_bact_b links to Rfam database...	0.82	0.76	0.89	96	84558	20	1	11	8	30
ASE_00035	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.74	73	70401	31	2	24	5	45
ASE_00037	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.84	74	59252	16	1	13	2	36
ASE_00038	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.88	75	53543	12	1	9	2	26
ASE_00040	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.82	92	78891	26	1	19	6	41
ASE_00041	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.86	72	57546	13	0	12	1	36
ASE_00042	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	100	89981	22	2	17	3	45
ASE_00044	RNaseP_bact_a links to Rfam database...	0.81	0.79	0.83	83	54515	21	3	14	4	22
ASE_00064	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.85	63	45377	19	0	11	8	26
ASE_00068	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.90	60	37608	8	1	6	1	25
ASE_00074	RNaseP_bact_a links to Rfam database...	0.78	0.75	0.82	89	67788	22	1	18	3	30
ASE_00075	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.86	110	108683	24	2	16	6	52
ASE_00077	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.79	56	45079	22	2	13	7	30
ASE_00078	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	64	42998	17	0	9	8	19
ASE_00080	RNaseP_bact_a links to Rfam database...	0.69	0.62	0.78	76	71533	26	0	22	4	47
ASE_00081	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.82	67	49688	17	2	13	2	30
ASE_00082	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.86	75	70413	24	0	12	12	41
ASE_00083	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	85	62386	12	0	10	2	25
ASE_00084	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.85	71	53544	20	1	12	7	28
ASE_00087	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.84	96	88296	24	1	17	6	48
ASE_00090	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	67	55518	31	1	25	5	34
ASE_00092	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.88	84	63451	16	1	10	5	29
ASE_00099	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.87	89	64518	19	1	12	6	31
ASE_00104	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.82	84	64158	25	1	18	6	35
ASE_00105	RNaseP_bact_a links to Rfam database...	0.64	0.55	0.75	61	64180	25	1	19	5	50
ASE_00107	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	93	73043	19	1	16	2	34
ASE_00115	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	54533	12	0	9	3	28
ASE_00118	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	67	60636	26	1	22	3	35
ASE_00119	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	68	62757	12	0	10	2	40
ASE_00123	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	53	38435	19	1	14	4	32
ASE_00125	RNaseP_bact_a links to Rfam database...	0.81	0.68	0.95	60	39277	7	0	3	4	28
ASE_00126	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.82	63	40393	17	1	13	3	19
ASE_00128	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	77	53214	15	1	9	5	23
ASE_00129	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.83	79	62740	21	1	15	5	32
ASE_00131	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	54	39275	16	1	10	5	31
ASE_00134	RNaseP_bact_a links to Rfam database...	0.73	0.72	0.76	68	50313	28	2	20	6	27
ASE_00135	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.84	77	63098	26	0	15	11	32
ASE_00136	RNaseP_bact_a links to Rfam database...	0.87	0.80	0.94	74	48126	11	0	5	6	18
ASE_00137	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.87	78	48426	14	3	9	2	20
ASE_00138	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.78	58	40396	18	1	15	2	23
ASE_00140	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.82	82	70776	21	3	15	3	43
ASE_00142	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.90	95	67056	14	3	7	4	27
ASE_00146	RNaseP_bact_a links to Rfam database...	0.70	0.64	0.76	79	70772	30	1	24	5	45
ASE_00153	RNaseP_nuc links to Rfam database...	0.67	0.67	0.67	49	57557	63	2	22	39	24
ASE_00163	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	63	53218	29	2	18	9	30
ASE_00165	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	67	52884	26	4	20	2	34
ASE_00170	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	72	48747	11	2	7	2	21
ASE_00171	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.93	74	48436	10	0	6	4	20
ASE_00172	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.85	79	58903	20	1	13	6	27
ASE_00174	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	64	60997	15	0	14	1	45
ASE_00175	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.74	68	59939	29	3	21	5	39
ASE_00179	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.87	62	44182	12	1	8	3	22
ASE_00180	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	77	51272	16	2	9	5	23
ASE_00181	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	76	57537	24	0	17	7	30
ASE_00182	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.85	89	84150	17	1	15	1	47
ASE_00183	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.78	80	61322	29	0	23	6	33
ASE_00184	RNaseP_bact_a links to Rfam database...	0.81	0.78	0.84	80	54520	24	1	14	9	22
ASE_00185	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.84	92	73426	23	1	17	5	36
ASE_00186	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.84	98	78886	26	3	16	7	34
ASE_00190	RNaseP_bact_b links to Rfam database...	0.64	0.52	0.78	47	45391	16	1	12	3	43
ASE_00197	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.80	101	89127	31	3	22	6	44
ASE_00198	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.85	72	52565	14	3	10	1	30
ASE_00203	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.91	77	46580	10	3	5	2	19
ASE_00212	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.88	113	93832	22	2	14	6	35
ASE_00214	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.80	74	56187	24	2	17	5	29
ASE_00215	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.78	54	48447	23	0	15	8	45
ASE_00216	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.86	66	39263	13	3	8	2	16
ASE_00217	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	61	40394	17	2	13	2	29
ASE_00221	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.85	79	64527	19	1	13	5	38
ASE_00228	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	65	46894	17	3	9	5	21
ASE_00229	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.78	64	42404	20	5	13	2	23
ASE_00231	RNaseP_bact_a links to Rfam database...	0.81	0.78	0.84	75	47806	15	4	10	1	21
ASE_00232	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.85	67	38424	14	4	8	2	17
ASE_00234	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.77	75	75369	25	2	20	3	54
ASE_00238	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	74	64166	24	4	17	3	40
ASE_00241	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.76	55	43884	22	1	16	5	32
ASE_00242	RNaseP_bact_a links to Rfam database...	0.84	0.80	0.87	90	60972	18	1	12	5	22
ASE_00248	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.77	74	62385	26	0	22	4	40
ASE_00254	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	64	36783	16	3	6	7	18
ASE_00255	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.79	85	74583	25	2	21	2	45
ASE_00257	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	71	50955	19	1	13	5	26
ASE_00263	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.88	93	70394	16	2	11	3	27
ASE_00267	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.83	60	45078	22	0	12	10	28
ASE_00270	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	88	72279	28	2	21	5	40
ASE_00274	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.77	58	55536	21	3	14	4	45
ASE_00277	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	56	48136	15	1	12	2	35
ASE_00279	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	74	53214	17	2	11	4	27
ASE_00280	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.78	62	51923	24	1	17	6	36
ASE_00281	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	63	44482	14	0	6	8	25
ASE_00282	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	86	77708	24	3	18	3	41
ASE_00283	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.83	75	61686	19	3	12	4	32
ASE_00284	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.86	84	58213	22	2	12	8	24
ASE_00285	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	84	68906	23	2	14	7	38
ASE_00286	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	71	46585	19	1	8	10	21
ASE_00287	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	74	54858	19	2	12	5	29
ASE_00292	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	101	81691	23	3	15	5	37
ASE_00294	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.91	127	114342	18	1	11	6	44
ASE_00296	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.79	99	91680	31	2	25	4	46
ASE_00297	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.71	61	52889	27	2	23	2	37
ASE_00298	RNaseP_bact_a links to Rfam database...	0.55	0.49	0.63	55	67441	34	1	31	2	58
ASE_00318	RNaseP_bact_b links to Rfam database...	0.76	0.70	0.83	83	80100	24	5	12	7	35
ASE_00328	RNaseP_bact_b links to Rfam database...	0.74	0.63	0.86	71	72688	24	1	11	12	41
ASE_00332	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	101	81691	25	2	16	7	37
ASE_00335	RNaseP_bact_b links to Rfam database...	0.78	0.72	0.83	84	75365	26	5	12	9	32
ASE_00340	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.79	63	45976	24	4	13	7	22
ASE_00342	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.83	83	62381	19	2	15	2	32
ASE_00353	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	74	57876	25	1	19	5	33
ASE_00361	RNaseP_bact_a links to Rfam database...	0.63	0.54	0.73	68	75373	26	0	25	1	59
ASE_00362	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.78	66	48120	21	1	18	2	25
ASE_00363	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.88	71	51279	14	0	10	4	23
ASE_00364	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	74	54195	21	0	16	5	31
ASE_00366	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.70	61	58566	28	3	23	2	37
ASE_00367	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.79	59	42996	26	0	16	10	27
ASE_00369	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	85	55848	17	0	12	5	22
ASE_00370	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	65	41832	15	0	8	7	19
ASE_00372	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.74	64	51916	25	3	20	2	36
ASE_00374	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.86	66	44773	15	0	11	4	22
ASE_00376	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.76	71	56859	26	1	22	3	34
ASE_00377	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	85	57532	18	2	11	5	22
ASE_00379	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.76	61	45976	23	3	16	4	28
ASE_00382	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.91	69	41829	11	0	7	4	15
ASE_00383	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.86	80	54522	16	1	12	3	25
ASE_00384	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.87	72	48433	20	0	11	9	20
ASE_00386	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	73	50314	21	0	16	5	23
ASE_00387	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	71	55854	22	1	19	2	33
ASE_00388	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	62	45681	20	0	10	10	27
ASE_00390	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.88	65	42121	18	0	9	9	20
ASE_00393	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.74	55	47821	26	1	18	7	38
ASE_00394	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.95	77	46890	7	0	4	3	16
ASE_00395	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	64	41536	26	1	15	10	20
ASE_00396	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	67	41540	15	1	8	6	16
ASE_00397	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.88	78	54526	16	1	10	5	27
ASE_00398	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.88	73	55862	18	0	10	8	31
ASE_00400	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	69	57881	26	1	19	6	37
ASE_00401	RNaseP_bact_a links to Rfam database...	0.63	0.56	0.70	71	76926	33	4	27	2	55
ASE_00402	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	67	42410	12	0	9	3	18
ASE_00403	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.77	67	55858	24	0	20	4	40
ASE_00404	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.84	61	42998	22	0	12	10	24
ASE_00406	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.86	70	48747	21	0	11	10	24
ASE_00411	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.61	47	49378	33	10	20	3	42
ASE_00412	RNaseP_bact_a links to Rfam database...	0.67	0.63	0.73	66	58220	28	3	22	3	39
ASE_00413	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.71	54	44475	26	5	17	4	27
ASE_00415	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	68	54857	23	1	20	2	35
ASE_00416	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	97	77303	29	3	18	8	30
ASE_00419	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.91	81	54857	11	2	6	3	22
ASE_00422	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.83	73	46883	21	3	12	6	21
ASE_00423	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	77	56858	23	3	15	5	32
ASE_00428	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	92	76522	28	3	19	6	33
ASE_00430	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.77	72	46877	23	5	17	1	25
ASE_00437	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.62	67	79293	43	1	40	2	68
ASE_00441	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	77	64174	11	0	10	1	35
ASE_00448	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	76	64166	27	2	17	8	36
ASE_00451	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	88	70769	24	1	18	5	37
RFA_00599	Telomerase-vert links to Rfam database...	0.74	0.74	0.74	82	101364	50	9	20	21	29
RFA_00601	Telomerase-vert links to Rfam database...	0.76	0.75	0.77	85	99124	46	3	23	20	29
RFA_00602	Telomerase-vert links to Rfam database...	0.85	0.84	0.85	98	101360	32	5	12	15	18
TMR_00017	tmRNA links to Rfam database...	0.60	0.55	0.67	56	67077	32	7	21	4	46
TMR_00018	tmRNA links to Rfam database...	0.49	0.49	0.49	45	64529	50	12	34	4	47
TMR_00038	tmRNA links to Rfam database...	0.72	0.67	0.76	74	71156	29	6	17	6	36
TMR_00042	tmRNA links to Rfam database...	0.74	0.69	0.78	68	62748	25	2	17	6	30
TMR_00046	tmRNA links to Rfam database...	0.64	0.60	0.67	58	62749	34	4	24	6	38
TMR_00048	tmRNA links to Rfam database...	0.68	0.66	0.71	63	64891	35	6	20	9	32
TMR_00080	tmRNA links to Rfam database...	0.64	0.53	0.76	51	70433	16	6	10	0	45
TMR_00082	tmRNA links to Rfam database...	0.63	0.54	0.73	52	67825	20	6	13	1	44
TMR_00123	tmRNA links to Rfam database...	0.66	0.60	0.72	61	66345	29	3	21	5	40
TMR_00137	tmRNA links to Rfam database...	0.52	0.47	0.57	42	61001	37	9	23	5	47
TMR_00142	tmRNA links to Rfam database...	0.66	0.65	0.67	66	70778	40	8	24	8	36
TMR_00207	tmRNA links to Rfam database...	0.50	0.47	0.53	48	72300	47	8	34	5	55
TMR_00257	tmRNA links to Rfam database...	0.68	0.59	0.78	58	67087	22	1	15	6	40
TMR_00271	tmRNA links to Rfam database...	0.65	0.62	0.69	56	64180	34	6	19	9	35
TMR_00332	tmRNA links to Rfam database...	0.58	0.55	0.63	54	67075	37	5	27	5	45
TMR_00366	tmRNA links to Rfam database...	0.79	0.76	0.83	76	67804	27	3	13	11	24
TMR_00378	tmRNA links to Rfam database...	0.77	0.75	0.79	73	67804	32	4	15	13	24
TMR_00399	tmRNA links to Rfam database...	0.44	0.41	0.46	39	64896	52	12	33	7	55
TMR_00404	tmRNA links to Rfam database...	0.67	0.66	0.68	61	67438	45	7	22	16	31
TMR_00427	tmRNA links to Rfam database...	0.67	0.60	0.74	58	67450	25	8	12	5	39
TMR_00443	tmRNA links to Rfam database...	0.61	0.57	0.66	59	67071	35	5	26	4	45
TMR_00451	tmRNA links to Rfam database...	0.49	0.46	0.53	41	63469	40	11	25	4	48
TMR_00458	tmRNA links to Rfam database...	0.56	0.49	0.63	46	63473	30	8	19	3	47
TMR_00469	tmRNA links to Rfam database...	0.78	0.74	0.83	74	64531	24	5	10	9	26
TMR_00472	tmRNA links to Rfam database...	0.79	0.73	0.85	71	64536	24	7	6	11	26
TMR_00519	tmRNA links to Rfam database...	0.52	0.48	0.56	46	63108	47	11	25	11	49
TMR_00520	tmRNA links to Rfam database...	0.51	0.48	0.54	48	63101	51	14	27	10	51
TMR_00522	tmRNA links to Rfam database...	0.55	0.52	0.60	50	63106	43	11	23	9	47
TMR_00528	tmRNA links to Rfam database...	0.54	0.52	0.57	50	63102	48	12	26	10	47
TMR_00540	tmRNA links to Rfam database...	0.49	0.44	0.53	46	73450	47	9	31	7	58
TMR_00568	tmRNA links to Rfam database...	0.77	0.69	0.86	68	60647	21	1	10	10	31
TMR_00571	tmRNA links to Rfam database...	0.78	0.73	0.84	72	60640	27	2	12	13	27
TMR_00580	tmRNA links to Rfam database...	0.78	0.73	0.84	73	60639	26	3	11	12	27
TMR_00584	tmRNA links to Rfam database...	0.78	0.71	0.86	69	60995	21	3	8	10	28
TMR_00586	tmRNA links to Rfam database...	0.74	0.70	0.78	68	60988	28	6	13	9	29
TMR_00616	tmRNA links to Rfam database...	0.77	0.72	0.83	71	67075	21	4	11	6	28
TMR_00699	tmRNA links to Rfam database...	0.66	0.58	0.76	59	67083	24	1	18	5	43
TMR_00702	tmRNA links to Rfam database...	0.60	0.51	0.71	51	67089	26	5	16	5	49
TMR_00703	tmRNA links to Rfam database...	0.81	0.73	0.90	72	67448	13	1	7	5	27

^top

Performance of PknotsRG - scored lower in this pairwise comparison

1. Total counts & total scores for PknotsRG

Total Base Pair Counts
Total TP	10780
Total TN	12413400
Total FP	10748
Total FP CONTRA	1312
Total FP INCONS	8514
Total FP COMP	922
Total FN	10635

Total Scores
MCC	0.512
Average MCC ± 95% Confidence Intervals	0.511 ± 0.021
Sensitivity	0.503
Positive Predictive Value	0.523
Nr of predictions	204

^top

2. Individual counts for PknotsRG [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.71	0.70	69	47796	32	9	21	2	28
ASE_00005	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	68	57870	38	0	32	6	49
ASE_00006	RNaseP_bact_a links to Rfam database...	0.57	0.58	0.57	54	47491	44	7	34	3	39
ASE_00007	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.61	60	59586	43	1	38	4	50
ASE_00012	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.61	67	73811	49	2	40	7	56
ASE_00018	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	102	80479	22	3	17	2	32
ASE_00020	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.53	66	73796	58	8	50	0	60
ASE_00021	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	86	104056	61	7	47	7	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.46	0.44	0.48	54	82915	65	6	53	6	70
ASE_00028	RNaseP_bact_b links to Rfam database...	0.59	0.56	0.61	71	84550	53	4	41	8	55
ASE_00035	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	33	70398	76	11	58	7	85
ASE_00037	RNaseP_bact_a links to Rfam database...	0.24	0.23	0.25	25	59239	79	3	73	3	85
ASE_00038	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	55	53529	45	4	40	1	46
ASE_00040	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.52	63	78882	64	5	53	6	70
ASE_00041	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.55	54	57532	48	2	42	4	54
ASE_00042	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.58	72	89975	54	3	50	1	73
ASE_00044	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	71	54513	35	3	28	4	34
ASE_00064	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	38	45364	53	5	44	4	51
ASE_00068	RNaseP_bact_a links to Rfam database...	0.24	0.24	0.25	20	37596	59	5	54	0	65
ASE_00074	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.59	68	67781	47	6	41	0	51
ASE_00075	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	96	108676	46	2	37	7	66
ASE_00077	RNaseP_bact_a links to Rfam database...	0.25	0.24	0.25	21	45067	67	7	55	5	65
ASE_00078	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.68	56	42989	31	5	21	5	27
ASE_00080	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	54	71519	61	5	53	3	69
ASE_00081	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.54	51	49676	44	5	38	1	46
ASE_00082	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.54	54	70400	60	1	45	14	62
ASE_00083	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	82	62382	26	2	15	9	28
ASE_00084	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	68	53534	29	6	20	3	31
ASE_00087	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.65	83	88283	49	5	39	5	61
ASE_00090	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.59	60	55509	47	2	40	5	41
ASE_00092	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	79	63442	30	0	25	5	34
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	60	64506	56	6	48	2	60
ASE_00104	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.68	75	64151	36	3	32	1	44
ASE_00105	RNaseP_bact_a links to Rfam database...	0.38	0.36	0.40	40	64160	66	9	52	5	71
ASE_00107	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	57	73039	57	2	55	0	70
ASE_00115	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.49	47	54520	56	1	47	8	54
ASE_00118	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.45	45	60627	57	4	50	3	57
ASE_00119	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.69	70	62734	33	1	30	2	38
ASE_00123	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.42	33	38424	50	2	44	4	52
ASE_00125	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	55	39255	30	4	26	0	33
ASE_00126	RNaseP_bact_a links to Rfam database...	0.79	0.79	0.78	65	40387	21	3	15	3	17
ASE_00128	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.80	73	53210	25	2	16	7	27
ASE_00129	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	56	62730	53	5	44	4	55
ASE_00131	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.72	49	39272	29	0	19	10	36
ASE_00134	RNaseP_bact_a links to Rfam database...	0.56	0.57	0.55	54	50305	49	4	40	5	41
ASE_00135	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.48	50	63085	59	8	47	4	59
ASE_00136	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	43	48121	50	1	40	9	49
ASE_00137	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	42	48423	53	5	46	2	56
ASE_00138	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	42	40393	35	4	31	0	39
ASE_00140	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.74	81	70767	33	3	25	5	44
ASE_00142	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.79	85	67054	26	4	18	4	37
ASE_00146	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.56	57	70775	47	0	44	3	67
ASE_00153	RNaseP_nuc links to Rfam database...	0.61	0.62	0.61	45	57556	71	2	27	42	28
ASE_00163	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.30	27	53211	72	7	56	9	66
ASE_00165	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	56	52881	39	7	31	1	45
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	63	48741	25	2	22	1	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.73	66	48425	25	5	20	0	28
ASE_00172	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	70	58896	35	4	26	5	36
ASE_00174	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	56	60980	39	3	36	0	53
ASE_00175	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	47	59926	62	6	52	4	60
ASE_00179	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.62	55	44164	34	7	27	0	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.75	69	51268	29	2	21	6	31
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	56	57528	50	3	43	4	50
ASE_00182	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	64	84129	65	6	56	3	72
ASE_00183	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	80	61316	33	2	27	4	33
ASE_00184	RNaseP_bact_a links to Rfam database...	0.63	0.64	0.63	65	54511	39	10	29	0	37
ASE_00185	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.65	75	73420	43	5	36	2	53
ASE_00186	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	92	78885	31	3	23	5	40
ASE_00190	RNaseP_bact_b links to Rfam database...	0.46	0.44	0.47	40	45366	45	8	37	0	50
ASE_00197	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.51	66	89124	66	4	59	3	79
ASE_00198	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	54	52551	45	6	39	0	48
ASE_00203	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	65	46575	29	6	19	4	31
ASE_00212	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.55	77	93822	66	5	57	4	71
ASE_00214	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	78	56182	28	3	17	8	25
ASE_00215	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.57	52	48425	42	4	35	3	47
ASE_00216	RNaseP_bact_a links to Rfam database...	0.60	0.61	0.60	50	39256	36	8	26	2	32
ASE_00217	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.32	26	40388	60	6	50	4	64
ASE_00221	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	45	64514	65	3	58	4	72
ASE_00228	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.58	51	46883	37	14	23	0	35
ASE_00229	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.59	50	42401	39	5	30	4	37
ASE_00231	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.70	66	47801	28	5	23	0	30
ASE_00232	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	46	38422	38	3	32	3	38
ASE_00234	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.55	63	75351	56	2	50	4	66
ASE_00238	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.50	54	64152	58	4	51	3	60
ASE_00241	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	47	43875	43	0	34	9	40
ASE_00242	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	76	60975	27	3	21	3	36
ASE_00248	RNaseP_bact_a links to Rfam database...	0.46	0.42	0.49	48	62384	49	3	46	0	66
ASE_00254	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.63	49	36778	33	5	24	4	33
ASE_00255	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	59	74572	60	7	53	0	71
ASE_00257	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.65	62	50944	34	0	34	0	35
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	74	70380	47	5	41	1	46
ASE_00267	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	39	45069	51	5	37	9	49
ASE_00270	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.64	79	72267	45	8	36	1	49
ASE_00274	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.50	48	55515	48	8	40	0	55
ASE_00277	RNaseP_bact_a links to Rfam database...	0.39	0.40	0.39	36	48113	58	9	47	2	55
ASE_00279	RNaseP_bact_a links to Rfam database...	0.38	0.36	0.41	36	53213	58	1	51	6	65
ASE_00280	RNaseP_bact_a links to Rfam database...	0.37	0.37	0.38	36	51908	62	6	53	3	62
ASE_00281	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.58	45	44473	39	0	33	6	43
ASE_00282	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.42	52	77692	72	6	65	1	75
ASE_00283	RNaseP_bact_a links to Rfam database...	0.74	0.73	0.76	78	61673	27	5	20	2	29
ASE_00284	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	65	58210	43	4	32	7	43
ASE_00285	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	71	68899	43	2	34	7	51
ASE_00286	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	39	46574	61	3	49	9	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	57	54855	40	0	34	6	46
ASE_00292	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	91	81690	34	4	25	5	47
ASE_00294	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	127	114328	29	3	23	3	44
ASE_00296	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.33	43	91677	88	8	78	2	102
ASE_00297	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.54	52	52878	50	3	42	5	46
ASE_00298	RNaseP_bact_a links to Rfam database...	0.19	0.19	0.19	21	67420	90	9	78	3	92
ASE_00318	RNaseP_bact_b links to Rfam database...	0.64	0.61	0.67	72	80092	40	13	23	4	46
ASE_00328	RNaseP_bact_b links to Rfam database...	0.41	0.41	0.41	46	72659	73	3	63	7	66
ASE_00332	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	71	81686	59	2	51	6	67
ASE_00335	RNaseP_bact_b links to Rfam database...	0.52	0.52	0.52	60	75350	64	13	43	8	56
ASE_00340	RNaseP_bact_a links to Rfam database...	0.71	0.72	0.71	61	45970	34	7	18	9	24
ASE_00342	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.50	52	62378	51	1	50	0	63
ASE_00353	RNaseP_bact_a links to Rfam database...	0.46	0.47	0.45	50	57860	60	11	49	0	57
ASE_00361	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.38	46	75345	78	9	66	3	81
ASE_00362	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.63	56	48116	36	6	27	3	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.54	0.55	0.53	52	51262	46	5	41	0	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.33	33	54184	72	7	61	4	72
ASE_00366	RNaseP_bact_a links to Rfam database...	0.52	0.54	0.50	53	58547	55	12	41	2	45
ASE_00367	RNaseP_bact_a links to Rfam database...	0.33	0.35	0.32	30	42976	65	8	57	0	56
ASE_00369	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	72	55841	37	2	30	5	35
ASE_00370	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.66	53	41825	27	5	22	0	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.72	71	51905	30	5	22	3	29
ASE_00374	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	49	44764	37	8	29	0	39
ASE_00376	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	53	56855	48	4	41	3	52
ASE_00377	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	71	57531	34	3	25	6	36
ASE_00379	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	39	45969	55	7	41	7	50
ASE_00382	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.52	43	41822	43	6	34	3	41
ASE_00383	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	45	54516	59	4	50	5	60
ASE_00384	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.75	65	48429	27	4	18	5	27
ASE_00386	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	51	50306	51	4	42	5	45
ASE_00387	RNaseP_bact_a links to Rfam database...	0.36	0.37	0.35	38	55837	70	6	64	0	66
ASE_00388	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	60	45666	32	1	26	5	29
ASE_00390	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.53	41	42117	44	6	31	7	44
ASE_00393	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	32	47810	59	3	50	6	61
ASE_00394	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.73	67	46879	28	3	22	3	26
ASE_00395	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	41	41539	45	1	35	9	43
ASE_00396	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.38	30	41536	55	5	45	5	53
ASE_00397	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.52	54	54511	50	7	43	0	51
ASE_00398	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	64	55848	36	1	32	3	40
ASE_00400	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	55	57868	48	5	42	1	51
ASE_00401	RNaseP_bact_a links to Rfam database...	0.55	0.56	0.54	70	76898	60	13	47	0	56
ASE_00402	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.61	50	42404	35	4	28	3	35
ASE_00403	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.50	47	55851	51	3	44	4	60
ASE_00404	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.56	47	42987	42	0	37	5	38
ASE_00406	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	62	48742	33	2	22	9	32
ASE_00411	RNaseP_bact_a links to Rfam database...	0.26	0.27	0.26	24	49362	69	12	57	0	65
ASE_00412	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.39	39	58212	60	13	47	0	66
ASE_00413	RNaseP_bact_a links to Rfam database...	0.46	0.49	0.43	40	44457	54	14	40	0	41
ASE_00415	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.51	53	54843	52	7	43	2	50
ASE_00416	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.75	86	77306	36	1	28	7	41
ASE_00419	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.80	75	54852	23	4	15	4	28
ASE_00422	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.49	44	46881	51	5	41	5	50
ASE_00423	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	53	56847	56	9	44	3	56
ASE_00428	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	65	76521	54	5	45	4	60
ASE_00430	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.66	59	46881	36	5	26	5	38
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.44	55	79275	71	4	67	0	80
ASE_00441	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	83	64161	28	1	16	11	29
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.23	25	64151	91	6	79	6	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.52	59	70763	57	3	51	3	66
RFA_00599	Telomerase-vert links to Rfam database...	0.63	0.68	0.60	75	101349	70	18	33	19	36
RFA_00601	Telomerase-vert links to Rfam database...	0.48	0.50	0.46	57	99111	86	21	46	19	57
RFA_00602	Telomerase-vert links to Rfam database...	0.69	0.72	0.67	83	101351	61	10	31	20	33
TMR_00017	tmRNA links to Rfam database...	0.36	0.37	0.36	38	67055	74	15	53	6	64
TMR_00018	tmRNA links to Rfam database...	0.30	0.32	0.30	29	64522	75	10	59	6	63
TMR_00038	tmRNA links to Rfam database...	0.24	0.25	0.24	27	71141	89	12	73	4	83
TMR_00042	tmRNA links to Rfam database...	0.24	0.24	0.24	24	62735	79	9	67	3	74
TMR_00046	tmRNA links to Rfam database...	0.54	0.55	0.54	53	62736	49	11	35	3	43
TMR_00048	tmRNA links to Rfam database...	0.32	0.34	0.30	32	64875	78	9	64	5	63
TMR_00080	tmRNA links to Rfam database...	0.59	0.61	0.56	59	70395	49	16	30	3	37
TMR_00082	tmRNA links to Rfam database...	0.63	0.64	0.63	61	67799	41	12	24	5	35
TMR_00123	tmRNA links to Rfam database...	0.46	0.47	0.46	47	66327	57	11	45	1	54
TMR_00137	tmRNA links to Rfam database...	0.27	0.28	0.26	25	60980	78	14	56	8	64
TMR_00142	tmRNA links to Rfam database...	0.45	0.47	0.44	48	70767	70	15	46	9	54
TMR_00207	tmRNA links to Rfam database...	0.36	0.35	0.36	36	72291	70	4	59	7	67
TMR_00257	tmRNA links to Rfam database...	0.25	0.24	0.26	24	67068	73	8	61	4	74
TMR_00271	tmRNA links to Rfam database...	0.49	0.48	0.49	44	64171	54	8	38	8	47
TMR_00332	tmRNA links to Rfam database...	0.39	0.38	0.40	38	67065	62	9	49	4	61
TMR_00366	tmRNA links to Rfam database...	0.28	0.28	0.29	28	67798	83	12	58	13	72
TMR_00378	tmRNA links to Rfam database...	0.29	0.30	0.28	29	67791	87	7	69	11	68
TMR_00399	tmRNA links to Rfam database...	0.16	0.17	0.15	16	64871	97	27	66	4	78
TMR_00404	tmRNA links to Rfam database...	0.28	0.30	0.26	28	67421	90	22	57	11	64
TMR_00427	tmRNA links to Rfam database...	0.31	0.31	0.31	30	67432	71	11	55	5	67
TMR_00443	tmRNA links to Rfam database...	0.45	0.45	0.46	47	67058	58	14	42	2	57
TMR_00451	tmRNA links to Rfam database...	0.17	0.19	0.16	17	63441	88	16	72	0	72
TMR_00458	tmRNA links to Rfam database...	0.20	0.20	0.20	19	63449	85	19	59	7	74
TMR_00469	tmRNA links to Rfam database...	0.40	0.41	0.38	41	64513	66	11	55	0	59
TMR_00472	tmRNA links to Rfam database...	0.36	0.38	0.35	37	64514	72	24	45	3	60
TMR_00519	tmRNA links to Rfam database...	0.14	0.15	0.13	14	63086	100	16	74	10	81
TMR_00520	tmRNA links to Rfam database...	0.36	0.37	0.35	37	63085	78	13	55	10	62
TMR_00522	tmRNA links to Rfam database...	0.36	0.36	0.36	35	63092	72	11	52	9	62
TMR_00528	tmRNA links to Rfam database...	0.13	0.13	0.12	13	63082	105	12	83	10	84
TMR_00540	tmRNA links to Rfam database...	0.45	0.45	0.46	47	73433	65	4	52	9	57
TMR_00568	tmRNA links to Rfam database...	0.59	0.59	0.60	58	60630	47	3	35	9	41
TMR_00571	tmRNA links to Rfam database...	0.59	0.60	0.58	59	60625	47	7	35	5	40
TMR_00580	tmRNA links to Rfam database...	0.32	0.31	0.32	31	60630	70	13	52	5	69
TMR_00584	tmRNA links to Rfam database...	0.40	0.42	0.38	41	60967	72	8	59	5	56
TMR_00586	tmRNA links to Rfam database...	0.23	0.25	0.22	24	60964	88	18	69	1	73
TMR_00616	tmRNA links to Rfam database...	0.37	0.37	0.36	37	67058	71	18	48	5	62
TMR_00699	tmRNA links to Rfam database...	0.41	0.41	0.41	42	67059	63	10	50	3	60
TMR_00702	tmRNA links to Rfam database...	0.28	0.29	0.28	29	67057	80	18	57	5	71
TMR_00703	tmRNA links to Rfam database...	0.31	0.31	0.31	31	67427	74	16	54	4	68

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of TurboFold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for TurboFold(20)

2. Individual counts for TurboFold(20) [ download as .csv ]

Performance of PknotsRG - scored lower in this pairwise comparison

1. Total counts & total scores for PknotsRG

2. Individual counts for PknotsRG [ download as .csv ]