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Table of contents:

  1. Overview

  2. Performance Plots

  3. Performance of TurboFold(seed) - scored higher in this pairwise comparison

  4. Performance of Vsfold4 - scored lower in this pairwise comparison

  5. Compile and download dataset for TurboFold(seed) & Vsfold4 [.zip] - may take several seconds...


Overview

Metric TurboFold(seed) Vsfold4
MCC 0.710 > 0.099
Average MCC ± 95% Confidence Intervals 0.710 ± > 0.099 ±
Sensitivity 0.677 > 0.092
Positive Predictive Value 0.746 > 0.111
Total TP 44 > 6
Total TN 27202 < 27207
Total FP 16 < 50
Total FP CONTRA 4 < 7
Total FP INCONS 11 < 41
Total FP COMP 1 < 2
Total FN 21 < 59
P-value 0.0

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Performance plots


  1. Comparison of performance of TurboFold(seed) and Vsfold4. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for TurboFold(seed) and Vsfold4).

  2. Comparison of average Matthews Correlation Coefficients (MCCs) for TurboFold(seed) and Vsfold4. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for TurboFold(seed) and Vsfold4).

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Performance of TurboFold(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for TurboFold(seed)

Total Base Pair Counts
Total TP 44
Total TN 27202
Total FP 16
Total FP CONTRA 4
Total FP INCONS 11
Total FP COMP 1
Total FN 21
Total Scores
MCC 0.710
Average MCC ± 95% Confidence Intervals 0.710 ±
Sensitivity 0.677
Positive Predictive Value 0.746
Nr of predictions 1

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2. Individual counts for TurboFold(seed) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
ASE_00210

RNaseP_arch links to Rfam database...

0.71 0.68 0.75 44 27202 16 4 11 1 21

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Performance of Vsfold4 - scored lower in this pairwise comparison

1. Total counts & total scores for Vsfold4

Total Base Pair Counts
Total TP 6
Total TN 27207
Total FP 50
Total FP CONTRA 7
Total FP INCONS 41
Total FP COMP 2
Total FN 59
Total Scores
MCC 0.099
Average MCC ± 95% Confidence Intervals 0.099 ±
Sensitivity 0.092
Positive Predictive Value 0.111
Nr of predictions 1

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2. Individual counts for Vsfold4 [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
ASE_00210

RNaseP_arch links to Rfam database...

0.10 0.09 0.11 6 27207 50 7 41 2 59

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

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