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Table of contents:

  1. Overview

  2. Performance Plots

  3. Performance of Vsfold5 - scored higher in this pairwise comparison

  4. Performance of Cylofold - scored lower in this pairwise comparison

  5. Compile and download dataset for Vsfold5 & Cylofold [.zip] - may take several seconds...


Overview

Metric Vsfold5 Cylofold
MCC 0.357 > 0.271
Average MCC ± 95% Confidence Intervals 0.357 ± 0.200 > 0.275 ± 1.303
Sensitivity 0.336 > 0.241
Positive Predictive Value 0.383 > 0.308
Total TP 46 > 33
Total TN 60468 < 60481
Total FP 79 > 78
Total FP CONTRA 5 > 3
Total FP INCONS 69 < 71
Total FP COMP 5 > 4
Total FN 91 < 104
P-value 0.0

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Performance plots


  1. Comparison of performance of Vsfold5 and Cylofold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Vsfold5 and Cylofold).

  2. Comparison of average Matthews Correlation Coefficients (MCCs) for Vsfold5 and Cylofold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Vsfold5 and Cylofold).

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Performance of Vsfold5 - scored higher in this pairwise comparison

1. Total counts & total scores for Vsfold5

Total Base Pair Counts
Total TP 46
Total TN 60468
Total FP 79
Total FP CONTRA 5
Total FP INCONS 69
Total FP COMP 5
Total FN 91
Total Scores
MCC 0.357
Average MCC ± 95% Confidence Intervals 0.357 ± 0.200
Sensitivity 0.336
Positive Predictive Value 0.383
Nr of predictions 2

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2. Individual counts for Vsfold5 [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
ASE_00408 - 0.37 0.35 0.40 25 32322 38 5 33 0 46
ASE_00429 - 0.34 0.32 0.37 21 28146 41 0 36 5 45

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Performance of Cylofold - scored lower in this pairwise comparison

1. Total counts & total scores for Cylofold

Total Base Pair Counts
Total TP 33
Total TN 60481
Total FP 78
Total FP CONTRA 3
Total FP INCONS 71
Total FP COMP 4
Total FN 104
Total Scores
MCC 0.271
Average MCC ± 95% Confidence Intervals 0.275 ± 1.303
Sensitivity 0.241
Positive Predictive Value 0.308
Nr of predictions 2

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2. Individual counts for Cylofold [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
ASE_00408 - 0.17 0.15 0.20 11 32329 45 3 42 0 60
ASE_00429 - 0.38 0.33 0.43 22 28152 33 0 29 4 44

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

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