CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	ContextFold		CRWrnafold
MCC	0.743	>	0.361
Average MCC ± 95% Confidence Intervals	0.727 ± 0.030	>	0.351 ± 0.027
Sensitivity	0.691	>	0.362
Positive Predictive Value	0.798	>	0.361
Total TP	27352	>	14309
Total TN	91730584	>	91725184
Total FP	11031	<	30565
Total FP CONTRA	1256	<	4201
Total FP INCONS	5649	<	21147
Total FP COMP	4126	<	5217
Total FN	12209	<	25252
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of ContextFold and CRWrnafold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for ContextFold and CRWrnafold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for ContextFold and CRWrnafold).
Comparison of average Matthews Correlation Coefficients (MCCs) for ContextFold and CRWrnafold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for ContextFold and CRWrnafold).

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Performance of ContextFold - scored higher in this pairwise comparison

1. Total counts & total scores for ContextFold

Total Base Pair Counts
Total TP	27352
Total TN	91730584
Total FP	11031
Total FP CONTRA	1256
Total FP INCONS	5649
Total FP COMP	4126
Total FN	12209

Total Scores
MCC	0.743
Average MCC ± 95% Confidence Intervals	0.727 ± 0.030
Sensitivity	0.691
Positive Predictive Value	0.798
Nr of predictions	127

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2. Individual counts for ContextFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00002	-	0.59	0.52	0.69	136	408862	102	9	53	40	128
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.94	0.90	0.97	412	1107393	12	2	9	1	44
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.95	0.92	0.99	421	1108878	11	2	4	5	36
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.93	0.90	0.97	415	1135850	16	2	11	3	48
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.78	0.71	0.85	318	1082280	60	6	52	2	127
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.93	0.89	0.97	404	1105911	13	2	11	0	49
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.91	0.86	0.95	391	1111876	31	0	19	12	64
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.92	0.88	0.98	405	1122336	12	2	8	2	57
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.91	0.86	0.97	383	1085207	14	1	10	3	63
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.94	0.90	0.98	412	1114849	15	3	7	5	45
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.83	0.79	0.87	359	1110384	57	9	43	5	94
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.77	0.70	0.84	316	1129880	68	9	51	8	134
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.92	0.88	0.95	398	1117843	21	4	15	2	55
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.92	0.87	0.96	405	1144919	21	2	15	4	59
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.75	0.69	0.81	298	1015659	88	12	56	20	134
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.85	0.80	0.89	365	1131352	48	0	43	5	91
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.95	0.91	0.99	416	1117839	7	2	3	2	42
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.76	0.70	0.81	325	1123851	81	12	62	7	136
CRW_00338	-	0.25	0.26	0.25	102	1053015	324	55	254	15	293
CRW_00417	-	0.87	0.80	0.95	209	458183	19	2	9	8	53
CRW_00418	-	0.66	0.58	0.75	152	441127	54	6	45	3	108
CRW_00419	-	0.78	0.70	0.88	186	463954	32	6	20	6	79
CRW_00421	-	0.77	0.71	0.84	188	462978	47	6	31	10	78
CRW_00422	-	0.90	0.81	0.99	214	455318	14	0	3	11	49
CRW_00424	-	0.69	0.63	0.77	228	789098	94	11	59	24	135
CRW_00426	-	0.88	0.81	0.97	214	457225	18	0	7	11	51
CRW_00427	-	0.80	0.74	0.88	192	454363	31	5	21	5	69
CRW_00428	-	0.80	0.71	0.89	185	465888	28	2	20	6	75
CRW_00430	-	0.76	0.71	0.83	188	456263	46	7	32	7	78
CRW_00433	-	0.83	0.73	0.94	192	467823	17	2	11	4	71
CRW_00434	-	0.87	0.77	0.97	203	457237	12	3	3	6	60
CRW_00435	-	0.60	0.51	0.69	136	451528	71	6	55	10	129
CRW_00437	-	0.85	0.77	0.94	199	456279	19	1	11	7	61
CRW_00438	-	0.75	0.66	0.84	178	454369	43	5	29	9	90
CRW_00441	-	0.84	0.76	0.93	198	454368	21	1	14	6	64
CRW_00442	-	0.76	0.68	0.84	178	453416	46	4	30	12	83
CRW_00443	-	0.61	0.53	0.70	138	456292	71	7	53	11	122
CRW_00444	-	0.89	0.81	0.98	214	459143	13	2	2	9	49
CRW_00445	-	0.86	0.76	0.97	202	458195	11	1	5	5	63
CRW_00446	-	0.86	0.79	0.93	209	468771	29	3	13	13	56
CRW_00447	-	0.61	0.58	0.66	150	452447	84	15	64	5	110
CRW_00448	-	0.86	0.76	0.97	198	457241	20	1	6	13	63
CRW_00449	-	0.83	0.76	0.91	197	444879	26	7	13	6	63
CRW_00450	-	0.76	0.68	0.84	178	458191	47	6	28	13	84
CRW_00451	-	0.84	0.76	0.92	201	457228	26	4	13	9	63
CRW_00452	-	0.88	0.79	0.98	208	453415	14	3	2	9	54
CRW_00453	-	0.75	0.66	0.86	172	452477	34	3	24	7	89
CRW_00456	-	0.82	0.74	0.91	195	470720	26	2	18	6	70
CRW_00457	-	0.86	0.78	0.95	207	467811	23	3	7	13	57
CRW_00458	-	0.91	0.84	0.98	223	464902	16	2	3	11	41
CRW_00459	-	0.87	0.79	0.96	207	462025	19	0	9	10	56
CRW_00462	-	0.79	0.70	0.88	183	458196	30	6	18	6	78
CRW_00463	-	0.75	0.69	0.82	176	445825	42	11	28	3	78
CRW_00464	-	0.88	0.80	0.97	212	462022	14	2	5	7	52
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.95	0.92	0.98	421	1116336	10	3	5	2	37
CRW_00530	-	0.29	0.28	0.30	74	534851	176	43	127	6	194
CRW_00535	-	0.45	0.44	0.47	144	898162	183	38	126	19	184
CRW_00538	-	0.31	0.29	0.34	88	811913	189	31	143	15	212
CRW_00542	-	0.20	0.21	0.20	67	994418	300	70	200	30	250
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.84	0.79	0.90	350	1094071	49	3	36	10	95
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.85	0.79	0.91	358	1119364	45	3	31	11	94
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.92	0.88	0.96	393	1098492	32	6	12	14	53
CRW_00594	-	0.21	0.21	0.21	83	1028491	337	39	282	16	312
CRW_00596	-	0.53	0.51	0.55	198	1024237	183	25	136	22	188
CRW_00604	-	0.76	0.77	0.76	62	411696	170	7	13	150	19
CRW_00606	-	0.55	0.57	0.54	52	559057	214	15	29	170	40
CRW_00607	-	0.82	0.77	0.88	59	536063	209	0	8	201	18
CRW_00615	-	0.73	0.71	0.75	58	553801	230	14	5	211	24
CRW_00617	-	0.35	0.38	0.32	24	426351	179	22	29	128	40
CRW_00678	-	0.48	0.51	0.45	62	666296	245	14	63	168	59
CRW_00680	-	0.88	0.84	0.92	102	516525	157	3	6	148	20
CRW_00683	-	0.61	0.64	0.58	86	460172	167	26	36	105	49
CRW_00684	-	0.60	0.64	0.56	86	612017	209	26	42	141	49
CRW_00702	-	0.74	0.79	0.69	59	357350	156	19	7	130	16
CRW_00704	-	0.58	0.54	0.61	51	386677	165	11	21	133	43
CRW_00706	-	0.54	0.63	0.47	37	695531	262	23	19	220	22
CRW_00710	-	0.65	0.63	0.68	72	1040297	294	10	24	260	42
CRW_00712	-	0.59	0.58	0.61	63	952786	270	6	35	229	45
CRW_00713	-	0.64	0.59	0.70	60	731359	250	4	22	224	41
CRW_00765	-	0.86	0.79	0.93	203	452457	30	4	12	14	54
CRW_00766	-	0.41	0.38	0.45	92	440185	127	14	100	13	148
CRW_00768	-	0.83	0.76	0.92	196	471692	35	1	17	17	63
CRW_00769	-	0.69	0.62	0.78	155	451525	53	9	36	8	97
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.71	0.65	0.79	262	945667	95	9	62	24	142
CRW_00773	-	0.80	0.74	0.87	192	451505	40	1	27	12	67
CRW_00774	-	0.85	0.78	0.94	205	488347	28	1	13	14	58
CRW_00777	-	0.46	0.44	0.48	135	719120	172	28	117	27	169
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.71	0.64	0.79	246	1201714	124	13	52	59	138
CRW_00779	-	0.48	0.44	0.53	184	1031419	181	18	145	18	238
CRW_00780	-	0.81	0.73	0.90	185	475594	40	5	16	19	70
CRW_00783	-	0.82	0.73	0.93	188	453425	24	2	13	9	71
CRW_00784	-	0.88	0.80	0.96	210	456272	24	2	6	16	52
CRW_00785	-	0.80	0.72	0.88	183	452468	37	3	22	12	70
CRW_00787	-	0.47	0.44	0.50	134	646683	154	23	113	18	172
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.85	0.80	0.91	357	1137392	54	3	34	17	90
CRW_00793	-	0.54	0.50	0.58	189	1048748	192	25	114	53	188
CRW_00794	-	0.57	0.50	0.64	123	434586	76	10	59	7	123
CRW_00796	-	0.47	0.41	0.55	96	384827	87	6	74	7	139
CRW_00797	-	0.41	0.39	0.44	132	692956	181	21	144	16	210
CRW_00801	-	0.72	0.68	0.76	169	438295	67	11	41	15	80
CRW_00802	-	0.69	0.64	0.75	162	460104	68	15	39	14	91
CRW_00813	-	0.36	0.39	0.33	52	530805	210	44	64	102	81
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.93	0.90	0.96	425	1117816	31	1	18	12	45
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.92	0.90	0.95	419	1135835	28	6	18	4	45
CRW_01134	-	0.68	0.63	0.75	267	964999	103	10	79	14	160
CRW_01168	-	0.79	0.73	0.86	298	900806	67	5	44	18	113
CRW_01186	-	0.81	0.76	0.87	293	836234	52	8	36	8	93
CRW_01188	-	0.50	0.46	0.54	180	837529	163	17	139	7	213
CRW_01189	-	0.58	0.54	0.63	211	862304	132	17	109	6	181
CRW_01214	-	0.79	0.73	0.87	295	931954	52	12	34	6	110
CRW_01222	-	0.59	0.54	0.66	213	912953	120	18	92	10	184
CRW_01224	-	0.76	0.70	0.83	276	912945	62	8	47	7	121
CRW_01239	-	0.56	0.51	0.61	193	840140	134	22	101	11	189
CRW_01250	-	0.79	0.71	0.88	269	781568	41	5	33	3	109
CRW_01260	-	0.73	0.64	0.82	252	912969	76	0	55	21	141
CRW_01266	-	0.78	0.73	0.84	278	818229	67	5	48	14	103
CRW_01271	-	0.58	0.54	0.63	205	827215	135	18	103	14	176
CRW_01275	-	0.79	0.74	0.84	321	1082273	75	15	47	13	111
CRW_01283	-	0.80	0.73	0.87	299	963624	64	6	37	21	110
CRW_01314	-	0.69	0.61	0.78	249	937446	74	11	59	4	158
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.82	0.76	0.89	328	977531	59	6	36	17	106
CRW_01344	-	0.67	0.62	0.73	226	791602	94	9	74	11	140
PDB_00409	-	0.60	0.61	0.60	149	688301	225	27	74	124	96
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.87	0.79	0.96	392	1073435	37	4	14	19	103
PDB_00805	-	0.65	0.61	0.69	183	467763	101	10	72	19	119
PDB_01261	-	0.68	0.58	0.79	196	467781	51	4	47	0	140
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.86	0.78	0.94	385	1117852	50	4	19	27	106

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Performance of CRWrnafold - scored lower in this pairwise comparison

1. Total counts & total scores for CRWrnafold

Total Base Pair Counts
Total TP	14309
Total TN	91725184
Total FP	30565
Total FP CONTRA	4201
Total FP INCONS	21147
Total FP COMP	5217
Total FN	25252

Total Scores
MCC	0.361
Average MCC ± 95% Confidence Intervals	0.351 ± 0.027
Sensitivity	0.362
Positive Predictive Value	0.361
Nr of predictions	127

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2. Individual counts for CRWrnafold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00002	-	0.32	0.31	0.33	82	408808	203	23	147	33	182
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.57	257	1107367	210	22	170	18	199
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.57	0.57	0.58	259	1108856	209	20	170	19	198
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.48	226	1135811	256	30	211	15	237
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.39	168	1082220	282	31	237	14	277
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.54	240	1105883	225	26	179	20	213
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.50	225	1111832	246	27	202	17	230
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.69	0.67	0.71	311	1122312	152	21	107	24	151
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.41	0.41	0.41	181	1085155	279	39	226	14	265
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.65	0.65	0.66	296	1114820	177	28	127	22	161
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.44	196	1110351	263	35	213	15	257
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.42	182	1129824	270	20	230	20	268
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.67	0.66	0.68	299	1117818	160	18	125	17	154
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.60	0.59	0.61	274	1144893	197	27	147	23	190
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.37	164	1015587	296	41	233	22	268
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.51	228	1131314	245	27	191	27	228
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.68	0.67	0.69	305	1117819	160	25	111	24	153
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.33	0.33	0.34	151	1123806	312	48	245	19	310
CRW_00338	-	0.11	0.12	0.10	47	1052969	417	74	336	7	348
CRW_00417	-	0.47	0.46	0.49	121	458154	138	19	109	10	141
CRW_00418	-	0.11	0.11	0.12	28	441094	219	29	179	11	232
CRW_00419	-	0.11	0.11	0.11	28	463922	224	26	190	8	237
CRW_00421	-	0.44	0.44	0.45	116	462946	156	22	119	15	150
CRW_00422	-	0.26	0.25	0.27	66	455293	196	40	136	20	197
CRW_00424	-	0.30	0.31	0.30	113	789017	287	29	237	21	250
CRW_00426	-	0.22	0.22	0.22	58	457187	213	31	170	12	207
CRW_00427	-	0.30	0.30	0.30	78	454321	200	36	146	18	183
CRW_00428	-	0.22	0.22	0.22	56	465839	213	30	170	13	204
CRW_00430	-	0.28	0.27	0.29	73	456241	183	22	154	7	193
CRW_00433	-	0.24	0.24	0.26	62	467785	187	23	158	6	201
CRW_00434	-	0.28	0.27	0.30	71	457208	176	24	143	9	192
CRW_00435	-	0.34	0.33	0.35	87	451479	166	32	127	7	178
CRW_00437	-	0.37	0.37	0.38	95	456241	166	25	129	12	165
CRW_00438	-	0.37	0.35	0.39	94	454341	154	16	130	8	174
CRW_00441	-	0.34	0.32	0.35	85	454341	166	23	132	11	177
CRW_00442	-	0.36	0.36	0.35	95	453360	184	38	135	11	166
CRW_00443	-	0.31	0.30	0.32	79	456243	194	27	141	26	181
CRW_00444	-	0.30	0.30	0.31	78	459108	186	25	150	11	185
CRW_00445	-	0.28	0.27	0.28	72	458149	187	34	148	5	193
CRW_00446	-	0.25	0.25	0.26	66	468741	200	28	161	11	199
CRW_00447	-	0.28	0.28	0.28	72	452417	197	30	157	10	188
CRW_00448	-	0.21	0.21	0.21	55	457190	217	34	167	16	206
CRW_00449	-	0.21	0.20	0.22	51	444861	190	28	156	6	209
CRW_00450	-	0.28	0.27	0.29	72	458156	192	23	152	17	190
CRW_00451	-	0.22	0.22	0.23	57	457196	202	24	169	9	207
CRW_00452	-	0.32	0.31	0.33	81	453380	179	30	137	12	181
CRW_00453	-	0.14	0.13	0.15	35	452439	210	30	172	8	226
CRW_00456	-	0.15	0.14	0.15	38	470689	214	27	181	6	227
CRW_00457	-	0.25	0.24	0.27	63	467791	186	25	149	12	201
CRW_00458	-	0.43	0.43	0.44	113	464872	153	31	114	8	151
CRW_00459	-	0.35	0.34	0.36	89	461993	180	16	143	21	174
CRW_00462	-	0.24	0.23	0.25	61	458160	190	33	149	8	200
CRW_00463	-	0.52	0.50	0.54	126	445807	130	25	82	23	128
CRW_00464	-	0.30	0.29	0.31	77	461995	176	26	143	7	187
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.71	0.70	0.71	320	1116316	158	22	107	29	138
CRW_00530	-	0.23	0.25	0.21	67	534774	263	62	192	9	201
CRW_00535	-	0.33	0.35	0.30	116	898086	295	80	188	27	212
CRW_00538	-	0.23	0.25	0.21	76	811810	307	80	209	18	224
CRW_00542	-	0.12	0.14	0.11	45	994333	407	100	277	30	272
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.36	153	1094035	290	40	232	18	292
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.61	0.59	0.64	268	1119334	184	21	133	30	184
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.56	0.56	0.56	249	1098461	218	30	163	25	197
CRW_00594	-	0.21	0.23	0.20	89	1028443	369	80	283	6	306
CRW_00596	-	0.23	0.24	0.21	92	1024167	349	55	282	12	294
CRW_00604	-	0.60	0.64	0.55	52	411684	224	14	28	182	29
CRW_00606	-	0.66	0.68	0.64	63	559055	272	9	26	237	29
CRW_00607	-	0.53	0.55	0.52	42	536049	294	8	31	255	35
CRW_00615	-	0.31	0.35	0.26	29	553768	313	24	57	232	53
CRW_00617	-	0.14	0.17	0.12	11	426336	250	28	51	171	53
CRW_00678	-	0.39	0.41	0.36	50	666297	318	15	73	230	71
CRW_00680	-	0.35	0.40	0.30	49	516475	256	34	78	144	73
CRW_00683	-	0.21	0.23	0.19	31	460161	267	33	95	139	104
CRW_00684	-	0.29	0.32	0.27	43	612013	300	32	83	185	92
CRW_00702	-	0.24	0.35	0.16	26	357274	237	91	44	102	49
CRW_00704	-	0.82	0.81	0.83	76	386668	201	0	16	185	18
CRW_00706	-	0.48	0.54	0.43	32	695536	339	10	32	297	27
CRW_00710	-	0.57	0.57	0.57	65	1040288	387	11	39	337	49
CRW_00712	-	0.27	0.33	0.22	36	952727	403	48	79	276	72
CRW_00713	-	0.58	0.58	0.58	59	731343	329	4	39	286	42
CRW_00765	-	0.41	0.41	0.40	106	452413	176	25	132	19	151
CRW_00766	-	0.18	0.18	0.18	43	440153	206	27	168	11	197
CRW_00768	-	0.38	0.37	0.38	96	471656	179	22	132	25	163
CRW_00769	-	0.43	0.42	0.44	106	451484	154	27	108	19	146
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.19	0.18	0.19	74	945610	325	42	274	9	330
CRW_00773	-	0.47	0.46	0.48	120	451476	149	24	105	20	139
CRW_00774	-	0.18	0.18	0.18	47	488302	225	39	178	8	216
CRW_00777	-	0.25	0.27	0.24	82	719059	279	63	196	20	222
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.42	159	1201646	291	25	195	71	225
CRW_00779	-	0.28	0.28	0.27	120	1031326	338	33	287	18	302
CRW_00780	-	0.13	0.13	0.13	34	475544	230	36	186	8	221
CRW_00783	-	0.20	0.20	0.20	51	453371	220	26	180	14	208
CRW_00784	-	0.26	0.26	0.27	67	456240	199	26	157	16	195
CRW_00785	-	0.30	0.29	0.30	74	452430	189	23	149	17	179
CRW_00787	-	0.28	0.29	0.28	88	646633	259	39	193	27	218
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	224	1137356	236	32	174	30	223
CRW_00793	-	0.31	0.32	0.31	120	1048689	320	49	218	53	257
CRW_00794	-	0.25	0.25	0.25	62	434530	200	22	164	14	184
CRW_00796	-	0.13	0.13	0.14	30	384783	202	26	164	12	205
CRW_00797	-	0.25	0.26	0.24	89	692885	299	49	230	20	253
CRW_00801	-	0.43	0.44	0.43	109	438263	163	37	107	19	140
CRW_00802	-	0.30	0.30	0.31	75	460078	195	26	141	28	178
CRW_00813	-	0.18	0.23	0.14	31	530751	279	68	115	96	102
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.47	0.47	0.47	222	1117790	269	18	230	21	248
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.69	0.69	0.69	318	1135820	167	27	113	27	146
CRW_01134	-	0.29	0.29	0.29	123	964928	311	41	263	7	304
CRW_01168	-	0.41	0.41	0.41	168	900747	251	32	206	13	243
CRW_01186	-	0.27	0.27	0.27	105	836184	289	42	240	7	281
CRW_01188	-	0.12	0.12	0.11	48	837445	375	55	317	3	345
CRW_01189	-	0.24	0.24	0.23	95	862232	324	57	257	10	297
CRW_01214	-	0.21	0.21	0.22	85	931905	318	31	274	13	320
CRW_01222	-	0.26	0.25	0.26	101	912892	291	46	237	8	296
CRW_01224	-	0.24	0.24	0.24	94	912883	306	34	265	7	303
CRW_01239	-	0.21	0.21	0.21	81	840064	325	54	257	14	301
CRW_01250	-	0.30	0.30	0.30	114	781500	271	38	223	10	264
CRW_01260	-	0.15	0.15	0.15	59	912890	348	33	294	21	334
CRW_01266	-	0.30	0.30	0.30	115	818176	283	35	234	14	266
CRW_01271	-	0.29	0.30	0.28	115	827136	300	53	237	10	266
CRW_01275	-	0.33	0.33	0.33	144	1082222	305	49	241	15	288
CRW_01283	-	0.39	0.39	0.39	161	963557	267	29	219	19	248
CRW_01314	-	0.28	0.27	0.28	110	937374	293	34	247	12	297
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.36	0.38	158	977489	271	43	211	17	276
CRW_01344	-	0.23	0.23	0.23	83	791549	283	43	236	4	283
PDB_00409	-	0.27	0.31	0.23	77	688219	317	88	167	62	168
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.65	0.61	0.69	304	1073402	166	18	121	27	191
PDB_00805	-	0.59	0.58	0.60	176	467736	139	17	99	23	126
PDB_01261	-	0.48	0.45	0.50	152	467726	150	4	146	0	184
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.56	253	1117806	233	20	181	32	238

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of ContextFold - scored higher in this pairwise comparison

1. Total counts & total scores for ContextFold

2. Individual counts for ContextFold [ download as .csv ]

Performance of CRWrnafold - scored lower in this pairwise comparison

1. Total counts & total scores for CRWrnafold

2. Individual counts for CRWrnafold [ download as .csv ]