CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	ContextFold		UNAFold
MCC	0.649	>	0.380
Average MCC ± 95% Confidence Intervals	0.657 ± 0.025	>	0.377 ± 0.017
Sensitivity	0.609	>	0.380
Positive Predictive Value	0.693	>	0.381
Total TP	70540	>	44009
Total TN	446880664	>	446867076
Total FP	45502	<	88612
Total FP CONTRA	5517	<	12176
Total FP INCONS	25747	<	59207
Total FP COMP	14238	<	17229
Total FN	45376	<	71907
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of ContextFold and UNAFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for ContextFold and UNAFold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for ContextFold and UNAFold).
Comparison of average Matthews Correlation Coefficients (MCCs) for ContextFold and UNAFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for ContextFold and UNAFold).

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Performance of ContextFold - scored higher in this pairwise comparison

1. Total counts & total scores for ContextFold

Total Base Pair Counts
Total TP	70540
Total TN	446880664
Total FP	45502
Total FP CONTRA	5517
Total FP INCONS	25747
Total FP COMP	14238
Total FN	45376

Total Scores
MCC	0.649
Average MCC ± 95% Confidence Intervals	0.657 ± 0.025
Sensitivity	0.609
Positive Predictive Value	0.693
Nr of predictions	256

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2. Individual counts for ContextFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.34	0.30	0.39	63	3173779	531	14	84	433	146
CRW_00002	-	0.59	0.52	0.69	136	408862	102	9	53	40	128
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.95	0.92	0.98	423	1085170	15	3	5	7	35
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.91	0.89	0.93	421	1141864	43	16	15	12	53
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.94	0.90	0.98	421	1170787	8	3	4	1	49
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.94	0.90	0.97	412	1107393	12	2	9	1	44
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.91	0.88	0.95	416	1172309	22	2	19	1	57
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.94	0.90	0.97	429	1181511	14	7	6	1	47
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.95	0.92	0.99	421	1108878	11	2	4	5	36
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.96	0.92	0.99	430	1178445	8	0	5	3	35
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.93	0.90	0.97	415	1135850	16	2	11	3	48
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.93	0.89	0.97	426	1201584	22	4	11	7	50
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.85	0.81	0.90	376	1152502	48	6	37	5	90
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.91	0.87	0.95	412	1179984	23	8	12	3	59
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.95	0.91	0.99	427	1190763	11	0	6	5	41
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.78	0.71	0.85	318	1082280	60	6	52	2	127
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.92	0.88	0.97	417	1178448	25	2	13	10	56
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.94	0.89	1.00	424	1207810	4	1	0	3	51
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.94	0.90	0.97	431	1198483	18	4	8	6	47
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.93	0.89	0.97	404	1105911	13	2	11	0	49
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.92	0.89	0.96	433	1218688	25	3	17	5	51
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.94	0.91	0.98	435	1198481	12	4	6	2	43
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.91	376	1192327	51	4	33	14	92
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.91	0.86	0.95	391	1111876	31	0	19	12	64
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.92	0.88	0.98	405	1122336	12	2	8	2	57
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.91	0.86	0.97	383	1085207	14	1	10	3	63
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.94	0.90	0.98	412	1114849	15	3	7	5	45
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.83	0.79	0.87	359	1110384	57	9	43	5	94
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.77	0.70	0.84	316	1129880	68	9	51	8	134
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.89	0.84	0.94	389	1180004	36	4	19	13	75
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.92	0.88	0.95	398	1117843	21	4	15	2	55
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.92	0.87	0.96	405	1144919	21	2	15	4	59
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.75	0.69	0.81	298	1015659	88	12	56	20	134
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.85	0.80	0.89	365	1131352	48	0	43	5	91
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.95	0.91	0.99	416	1117839	7	2	3	2	42
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.85	0.80	0.90	382	1189229	44	4	38	2	94
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.76	0.70	0.81	325	1123851	81	12	62	7	136
CRW_00294	-	0.45	0.44	0.47	255	2620362	377	49	239	89	331
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.38	0.35	0.41	173	1620475	275	37	215	23	321
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.51	0.47	0.55	245	1762058	245	26	174	45	274
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.37	0.36	0.37	168	1445399	304	63	220	21	294
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.49	0.47	0.52	243	1805487	271	31	189	51	278
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.58	0.54	0.63	271	1627677	194	30	132	32	231
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.47	0.45	0.49	232	1988538	308	45	200	63	285
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.50	0.46	0.54	218	1769618	245	34	151	60	259
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.36	0.33	0.40	171	1892055	315	40	219	56	343
CRW_00338	-	0.25	0.26	0.25	102	1053015	324	55	254	15	293
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.39	0.38	0.41	187	1586412	289	48	224	17	311
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.36	0.34	0.38	172	1584635	308	55	228	25	329
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.46	0.44	0.49	219	1615055	262	39	190	33	284
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.46	0.45	0.47	227	1674887	268	53	198	17	280
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.45	0.42	0.48	202	1579334	251	36	181	34	280
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.37	0.35	0.39	176	1640316	302	35	239	28	330
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.56	0.53	0.58	263	1611460	230	33	154	43	233
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.47	0.45	0.49	225	1625846	264	44	191	29	273
CRW_00374	-	0.44	0.41	0.48	227	2182530	324	37	211	76	323
CRW_00375	-	0.57	0.53	0.60	288	2298961	281	32	159	90	253
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.62	0.59	0.65	314	2126472	237	36	131	70	220
CRW_00381	-	0.56	0.54	0.59	299	2303227	281	32	173	76	258
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.39	0.38	0.39	197	1750754	338	55	250	33	318
CRW_00400	-	0.37	0.35	0.38	173	2678002	446	54	226	166	321
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.51	0.48	0.55	222	1606122	262	30	154	78	242
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.55	0.52	0.59	257	1615067	222	34	145	43	239
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.43	0.41	0.44	205	1665761	293	45	214	34	290
CRW_00417	-	0.87	0.80	0.95	209	458183	19	2	9	8	53
CRW_00418	-	0.66	0.58	0.75	152	441127	54	6	45	3	108
CRW_00419	-	0.78	0.70	0.88	186	463954	32	6	20	6	79
CRW_00421	-	0.77	0.71	0.84	188	462978	47	6	31	10	78
CRW_00422	-	0.90	0.81	0.99	214	455318	14	0	3	11	49
CRW_00424	-	0.69	0.63	0.77	228	789098	94	11	59	24	135
CRW_00426	-	0.88	0.81	0.97	214	457225	18	0	7	11	51
CRW_00427	-	0.80	0.74	0.88	192	454363	31	5	21	5	69
CRW_00428	-	0.80	0.71	0.89	185	465888	28	2	20	6	75
CRW_00430	-	0.76	0.71	0.83	188	456263	46	7	32	7	78
CRW_00433	-	0.83	0.73	0.94	192	467823	17	2	11	4	71
CRW_00434	-	0.87	0.77	0.97	203	457237	12	3	3	6	60
CRW_00435	-	0.60	0.51	0.69	136	451528	71	6	55	10	129
CRW_00437	-	0.85	0.77	0.94	199	456279	19	1	11	7	61
CRW_00438	-	0.75	0.66	0.84	178	454369	43	5	29	9	90
CRW_00441	-	0.84	0.76	0.93	198	454368	21	1	14	6	64
CRW_00442	-	0.76	0.68	0.84	178	453416	46	4	30	12	83
CRW_00443	-	0.61	0.53	0.70	138	456292	71	7	53	11	122
CRW_00444	-	0.89	0.81	0.98	214	459143	13	2	2	9	49
CRW_00445	-	0.86	0.76	0.97	202	458195	11	1	5	5	63
CRW_00446	-	0.86	0.79	0.93	209	468771	29	3	13	13	56
CRW_00447	-	0.61	0.58	0.66	150	452447	84	15	64	5	110
CRW_00448	-	0.86	0.76	0.97	198	457241	20	1	6	13	63
CRW_00449	-	0.83	0.76	0.91	197	444879	26	7	13	6	63
CRW_00450	-	0.76	0.68	0.84	178	458191	47	6	28	13	84
CRW_00451	-	0.84	0.76	0.92	201	457228	26	4	13	9	63
CRW_00452	-	0.88	0.79	0.98	208	453415	14	3	2	9	54
CRW_00453	-	0.75	0.66	0.86	172	452477	34	3	24	7	89
CRW_00454	-	0.37	0.35	0.40	151	1730350	328	43	186	99	284
CRW_00456	-	0.82	0.74	0.91	195	470720	26	2	18	6	70
CRW_00457	-	0.86	0.78	0.95	207	467811	23	3	7	13	57
CRW_00458	-	0.91	0.84	0.98	223	464902	16	2	3	11	41
CRW_00459	-	0.87	0.79	0.96	207	462025	19	0	9	10	56
CRW_00460	-	0.38	0.35	0.42	190	1972638	326	30	233	63	354
CRW_00462	-	0.79	0.70	0.88	183	458196	30	6	18	6	78
CRW_00463	-	0.75	0.69	0.82	176	445825	42	11	28	3	78
CRW_00464	-	0.88	0.80	0.97	212	462022	14	2	5	7	52
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.95	0.92	0.98	421	1116336	10	3	5	2	37
CRW_00468	-	0.54	0.51	0.57	439	4290211	342	60	275	7	416
CRW_00471	-	0.58	0.53	0.63	459	4211526	280	45	223	12	412
CRW_00474	-	0.71	0.66	0.76	548	3976888	190	28	146	16	288
CRW_00476	-	0.72	0.66	0.78	582	4278529	180	24	140	16	297
CRW_00478	-	0.79	0.73	0.85	634	4150773	131	13	101	17	229
CRW_00487	-	0.66	0.60	0.72	527	4223143	212	29	172	11	345
CRW_00488	-	0.58	0.52	0.65	464	4325500	260	26	221	13	422
CRW_00490	-	0.50	0.46	0.53	400	4145005	364	34	321	9	462
CRW_00495	-	0.70	0.64	0.75	553	4205714	195	19	164	12	305
CRW_00496	-	0.65	0.60	0.70	516	4194121	227	30	189	8	350
CRW_00499	-	0.71	0.66	0.77	583	4372644	193	21	155	17	300
CRW_00500	-	0.67	0.62	0.72	541	4205696	225	32	181	12	327
CRW_00501	-	0.65	0.60	0.70	523	4284385	232	27	193	12	345
CRW_00502	-	0.72	0.69	0.76	603	4296049	206	25	169	12	269
CRW_00503	-	0.53	0.48	0.57	419	4252257	323	37	273	13	448
CRW_00505	-	0.74	0.74	0.74	288	4784483	552	48	52	452	102
CRW_00507	-	0.66	0.61	0.72	528	4173876	210	36	165	9	337
CRW_00509	-	0.70	0.65	0.75	564	4182530	195	29	155	11	303
CRW_00511	-	0.55	0.50	0.60	432	4107693	298	26	260	12	424
CRW_00512	-	0.63	0.58	0.68	478	3815002	231	31	192	8	341
CRW_00516	-	0.67	0.62	0.72	543	4272676	219	15	192	12	333
CRW_00517	-	0.77	0.73	0.80	662	4566926	195	22	143	30	239
CRW_00518	-	0.55	0.51	0.60	450	4357873	314	38	267	9	434
CRW_00520	-	0.56	0.52	0.59	444	4208600	322	35	272	15	406
CRW_00521	-	0.55	0.49	0.61	417	4136447	278	28	234	16	427
CRW_00522	-	0.31	0.28	0.33	221	3642980	461	77	372	12	561
CRW_00525	-	0.32	0.32	0.32	259	4059009	587	57	500	30	554
CRW_00527	-	0.38	0.42	0.35	200	7782920	827	143	222	462	279
CRW_00528	-	0.49	0.49	0.49	244	9593889	946	61	196	689	256
CRW_00529	-	0.50	0.47	0.53	505	6312733	469	69	374	26	561
CRW_00530	-	0.29	0.28	0.30	74	534851	176	43	127	6	194
CRW_00535	-	0.45	0.44	0.47	144	898162	183	38	126	19	184
CRW_00538	-	0.31	0.29	0.34	88	811913	189	31	143	15	212
CRW_00542	-	0.20	0.21	0.20	67	994418	300	70	200	30	250
CRW_00544	-	0.29	0.29	0.30	211	8884521	829	127	361	341	528
CRW_00546	-	0.46	0.50	0.42	181	6171910	731	144	106	481	178
CRW_00547	-	0.62	0.59	0.66	507	4278506	275	33	229	13	356
CRW_00579	-	0.69	0.63	0.75	589	4290201	201	34	161	6	348
CRW_00583	-	0.69	0.63	0.75	589	4290201	201	34	161	6	348
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.84	0.79	0.90	350	1094071	49	3	36	10	95
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.85	0.79	0.91	358	1119364	45	3	31	11	94
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.92	0.88	0.96	393	1098492	32	6	12	14	53
CRW_00594	-	0.21	0.21	0.21	83	1028491	337	39	282	16	312
CRW_00596	-	0.53	0.51	0.55	198	1024237	183	25	136	22	188
CRW_00597	-	0.36	0.35	0.38	143	1200100	258	38	194	26	268
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.31	0.29	0.34	144	1665799	323	40	242	41	347
CRW_00599	-	0.49	0.46	0.52	253	3754681	568	34	202	332	293
CRW_00604	-	0.76	0.77	0.76	62	411696	170	7	13	150	19
CRW_00606	-	0.55	0.57	0.54	52	559057	214	15	29	170	40
CRW_00607	-	0.82	0.77	0.88	59	536063	209	0	8	201	18
CRW_00615	-	0.73	0.71	0.75	58	553801	230	14	5	211	24
CRW_00616	-	0.57	0.54	0.60	59	1699148	383	11	28	344	51
CRW_00617	-	0.35	0.38	0.32	24	426351	179	22	29	128	40
CRW_00678	-	0.48	0.51	0.45	62	666296	245	14	63	168	59
CRW_00680	-	0.88	0.84	0.92	102	516525	157	3	6	148	20
CRW_00683	-	0.61	0.64	0.58	86	460172	167	26	36	105	49
CRW_00684	-	0.60	0.64	0.56	86	612017	209	26	42	141	49
CRW_00702	-	0.74	0.79	0.69	59	357350	156	19	7	130	16
CRW_00704	-	0.58	0.54	0.61	51	386677	165	11	21	133	43
CRW_00705	-	0.29	0.33	0.27	28	1461090	408	29	48	331	58
CRW_00706	-	0.54	0.63	0.47	37	695531	262	23	19	220	22
CRW_00708	-	0.32	0.36	0.29	24	3457052	605	37	22	546	42
CRW_00709	-	0.17	0.18	0.17	15	1728783	445	12	60	373	70
CRW_00710	-	0.65	0.63	0.68	72	1040297	294	10	24	260	42
CRW_00711	-	0.12	0.15	0.09	19	2318580	512	98	84	330	105
CRW_00712	-	0.59	0.58	0.61	63	952786	270	6	35	229	45
CRW_00713	-	0.64	0.59	0.70	60	731359	250	4	22	224	41
CRW_00723	-	0.35	0.38	0.32	28	1583223	420	22	37	361	46
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.46	0.45	0.48	217	1640313	290	20	216	54	266
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.40	0.38	0.42	181	1636714	284	45	205	34	300
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.41	0.39	0.43	189	1638513	310	51	202	57	297
CRW_00761	-	0.34	0.33	0.35	156	2863981	522	58	226	238	318
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.75	0.69	0.82	306	1215649	111	12	53	46	140
CRW_00765	-	0.86	0.79	0.93	203	452457	30	4	12	14	54
CRW_00766	-	0.41	0.38	0.45	92	440185	127	14	100	13	148
CRW_00768	-	0.83	0.76	0.92	196	471692	35	1	17	17	63
CRW_00769	-	0.69	0.62	0.78	155	451525	53	9	36	8	97
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.71	0.65	0.79	262	945667	95	9	62	24	142
CRW_00773	-	0.80	0.74	0.87	192	451505	40	1	27	12	67
CRW_00774	-	0.85	0.78	0.94	205	488347	28	1	13	14	58
CRW_00777	-	0.46	0.44	0.48	135	719120	172	28	117	27	169
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.71	0.64	0.79	246	1201714	124	13	52	59	138
CRW_00779	-	0.48	0.44	0.53	184	1031419	181	18	145	18	238
CRW_00780	-	0.81	0.73	0.90	185	475594	40	5	16	19	70
CRW_00781	-	0.66	0.62	0.70	278	1978660	242	16	101	125	172
CRW_00783	-	0.82	0.73	0.93	188	453425	24	2	13	9	71
CRW_00784	-	0.88	0.80	0.96	210	456272	24	2	6	16	52
CRW_00785	-	0.80	0.72	0.88	183	452468	37	3	22	12	70
CRW_00786	-	0.74	0.70	0.78	317	1946946	215	12	76	127	133
CRW_00787	-	0.47	0.44	0.50	134	646683	154	23	113	18	172
CRW_00788	-	0.31	0.29	0.32	106	1758421	364	42	181	141	255
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.85	0.80	0.91	357	1137392	54	3	34	17	90
CRW_00790	-	0.67	0.62	0.71	279	1803659	212	12	100	100	168
CRW_00792	-	0.41	0.39	0.43	149	1581184	327	36	162	129	234
CRW_00793	-	0.54	0.50	0.58	189	1048748	192	25	114	53	188
CRW_00794	-	0.57	0.50	0.64	123	434586	76	10	59	7	123
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.65	0.59	0.71	232	1152596	140	14	79	47	162
CRW_00796	-	0.47	0.41	0.55	96	384827	87	6	74	7	139
CRW_00797	-	0.41	0.39	0.44	132	692956	181	21	144	16	210
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.83	0.77	0.89	361	1401569	111	5	40	66	109
CRW_00801	-	0.72	0.68	0.76	169	438295	67	11	41	15	80
CRW_00802	-	0.69	0.64	0.75	162	460104	68	15	39	14	91
CRW_00803	-	0.69	0.64	0.75	287	1952895	243	11	83	149	162
CRW_00804	-	0.26	0.23	0.30	94	1420143	299	34	184	81	309
CRW_00806	-	0.69	0.64	0.75	287	1913565	227	11	83	133	162
CRW_00807	-	0.59	0.56	0.62	224	1391587	214	15	120	79	174
CRW_00808	-	0.35	0.33	0.38	117	1301385	278	50	139	89	239
CRW_00813	-	0.36	0.39	0.33	52	530805	210	44	64	102	81
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.93	0.90	0.96	425	1117816	31	1	18	12	45
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.92	0.90	0.95	419	1135835	28	6	18	4	45
CRW_01134	-	0.68	0.63	0.75	267	964999	103	10	79	14	160
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.41	0.40	0.43	199	1606068	288	37	224	27	304
CRW_01168	-	0.79	0.73	0.86	298	900806	67	5	44	18	113
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.50	0.47	0.53	237	1593555	238	35	178	25	269
CRW_01186	-	0.81	0.76	0.87	293	836234	52	8	36	8	93
CRW_01188	-	0.50	0.46	0.54	180	837529	163	17	139	7	213
CRW_01189	-	0.58	0.54	0.63	211	862304	132	17	109	6	181
CRW_01214	-	0.79	0.73	0.87	295	931954	52	12	34	6	110
CRW_01222	-	0.59	0.54	0.66	213	912953	120	18	92	10	184
CRW_01224	-	0.76	0.70	0.83	276	912945	62	8	47	7	121
CRW_01239	-	0.56	0.51	0.61	193	840140	134	22	101	11	189
CRW_01250	-	0.79	0.71	0.88	269	781568	41	5	33	3	109
CRW_01260	-	0.73	0.64	0.82	252	912969	76	0	55	21	141
CRW_01266	-	0.78	0.73	0.84	278	818229	67	5	48	14	103
CRW_01271	-	0.58	0.54	0.63	205	827215	135	18	103	14	176
CRW_01275	-	0.79	0.74	0.84	321	1082273	75	15	47	13	111
CRW_01283	-	0.80	0.73	0.87	299	963624	64	6	37	21	110
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.38	0.36	0.40	185	1693252	309	52	231	26	330
CRW_01314	-	0.69	0.61	0.78	249	937446	74	11	59	4	158
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.82	0.76	0.89	328	977531	59	6	36	17	106
CRW_01344	-	0.67	0.62	0.73	226	791602	94	9	74	11	140
CRW_01456	-	0.54	0.51	0.58	431	4240579	337	32	286	19	420
PDB_00187	-	0.43	0.41	0.45	293	3746300	427	60	300	67	423
PDB_00401	-	0.62	0.54	0.71	511	3996657	237	37	173	27	442
PDB_00409	-	0.60	0.61	0.60	149	688301	225	27	74	124	96
PDB_00609	-	0.48	0.46	0.50	363	4156560	403	66	297	40	427
PDB_00644	-	0.50	0.47	0.52	386	4328414	398	78	275	45	434
PDB_00675	-	0.61	0.53	0.70	519	4168083	252	34	192	26	455
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.87	0.79	0.96	392	1073435	37	4	14	19	103
PDB_00704	-	0.64	0.56	0.74	541	4249337	226	30	162	34	432
PDB_00805	-	0.65	0.61	0.69	183	467763	101	10	72	19	119
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.90	0.85	0.95	455	1500298	52	7	18	27	80
PDB_00947	-	0.66	0.65	0.68	484	4310804	365	48	180	137	265
PDB_00993	-	0.46	0.44	0.49	350	3923488	392	62	301	29	452
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.85	0.78	0.93	426	1471011	64	4	29	31	121
PDB_01089	-	0.61	0.57	0.64	434	4053453	340	70	171	99	325
PDB_01102	-	0.69	0.66	0.72	575	4533766	305	33	192	80	290
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.86	0.81	0.91	455	1606027	68	3	43	22	107
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.90	0.85	0.96	459	1433493	36	3	16	17	81
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.88	0.80	0.97	422	1204693	33	2	11	20	105
PDB_01140	-	0.69	0.63	0.76	588	4176720	246	29	158	59	342
PDB_01143	-	0.64	0.57	0.73	578	4594203	237	22	193	22	444
PDB_01261	-	0.68	0.58	0.79	196	467781	51	4	47	0	140
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.86	0.78	0.94	385	1117852	50	4	19	27	106

^top

Performance of UNAFold - scored lower in this pairwise comparison

1. Total counts & total scores for UNAFold

Total Base Pair Counts
Total TP	44009
Total TN	446867076
Total FP	88612
Total FP CONTRA	12176
Total FP INCONS	59207
Total FP COMP	17229
Total FN	71907

Total Scores
MCC	0.380
Average MCC ± 95% Confidence Intervals	0.377 ± 0.017
Sensitivity	0.380
Positive Predictive Value	0.381
Nr of predictions	256

^top

2. Individual counts for UNAFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.45	0.44	0.46	93	3173737	661	15	95	551	116
CRW_00002	-	0.55	0.54	0.56	143	408803	127	31	83	13	121
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.77	0.76	0.78	347	1085158	132	19	77	36	111
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.64	0.64	0.64	303	1141840	196	31	142	23	171
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.52	0.51	0.53	241	1170762	229	24	188	17	229
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.44	195	1107376	258	28	217	13	261
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	227	1172295	238	32	192	14	246
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.52	241	1181493	233	41	178	14	235
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.47	209	1108862	250	23	211	16	248
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.55	250	1178428	227	29	173	25	215
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.66	0.65	0.67	303	1135826	172	19	130	23	160
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.58	0.58	0.59	275	1201557	219	25	168	26	201
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.41	0.41	0.42	190	1152471	280	32	228	20	276
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.65	0.63	0.66	299	1179965	174	29	123	22	172
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	207	1190736	269	34	219	16	261
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.28	0.28	0.29	126	1082215	327	39	276	12	319
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.51	0.49	0.53	234	1178440	221	29	177	15	239
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	211	1207765	281	32	227	22	264
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.57	256	1198474	218	27	169	22	222
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	163	1105885	293	45	235	13	290
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.58	0.57	0.58	276	1218667	230	24	174	32	208
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.39	0.39	0.39	186	1198451	301	43	246	12	292
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.52	228	1192304	228	35	173	20	240
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.47	0.45	0.48	207	1111853	250	29	197	24	248
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.48	0.47	0.50	217	1122314	236	33	187	16	245
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	222	1085175	222	28	176	18	224
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.68	0.68	0.69	310	1114822	160	19	120	21	147
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.35	154	1110361	293	42	238	13	299
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.44	186	1129832	259	29	209	21	264
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.45	197	1179977	258	31	211	16	267
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.68	0.67	0.68	302	1117819	159	19	120	20	151
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.65	0.63	0.67	291	1144909	165	18	123	24	173
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.25	0.24	0.25	103	1015621	323	37	264	22	329
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.29	0.28	0.29	129	1131319	325	39	273	13	327
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.75	0.74	0.76	338	1117818	130	22	82	26	120
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	203	1189200	274	30	220	24	273
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.43	184	1123823	255	41	202	12	277
CRW_00294	-	0.31	0.33	0.29	191	2620252	546	107	355	84	395
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.22	0.23	0.22	114	1620379	443	82	325	36	380
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	163	1761959	431	87	294	50	356
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.16	0.16	0.16	76	1445368	444	67	339	38	386
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.26	141	1805406	466	81	322	63	380
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.35	176	1627600	377	65	269	43	326
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.29	0.31	0.28	158	1988457	459	73	327	59	359
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.21	0.22	0.20	104	1769488	470	103	326	41	373
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.32	169	1891961	426	77	278	71	345
CRW_00338	-	0.15	0.16	0.14	64	1052953	413	75	334	4	331
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.27	138	1586355	422	75	303	44	360
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.29	155	1584555	401	76	304	21	346
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.26	0.26	0.26	131	1615002	412	57	313	42	372
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.39	200	1674848	370	67	250	53	307
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.33	0.35	0.32	167	1579237	391	83	266	42	315
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.25	0.26	0.25	130	1640246	437	74	316	47	376
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.30	159	1611384	399	75	292	32	337
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.36	0.36	0.36	180	1625800	366	59	267	40	318
CRW_00374	-	0.44	0.44	0.44	244	2182449	395	57	255	83	306
CRW_00375	-	0.28	0.29	0.27	158	2298864	499	77	341	81	383
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	215	2126404	429	56	278	95	319
CRW_00381	-	0.30	0.31	0.30	174	2303144	499	73	340	86	383
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.25	0.27	0.24	137	1750675	476	78	366	32	378
CRW_00400	-	0.19	0.20	0.18	98	2677906	616	88	363	165	396
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	146	1606048	418	64	270	84	318
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.27	138	1614990	413	60	315	38	358
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.29	154	1665688	426	77	306	43	341
CRW_00417	-	0.39	0.38	0.40	99	458154	161	21	129	11	163
CRW_00418	-	0.22	0.20	0.24	52	441115	174	21	142	11	208
CRW_00419	-	0.20	0.18	0.21	49	463930	194	17	170	7	216
CRW_00421	-	0.31	0.30	0.33	79	462964	173	28	132	13	187
CRW_00422	-	0.37	0.36	0.38	95	455287	170	24	129	17	168
CRW_00424	-	0.38	0.39	0.38	140	789031	251	22	203	26	223
CRW_00426	-	0.34	0.33	0.35	88	457193	175	23	142	10	177
CRW_00427	-	0.21	0.21	0.22	54	454337	205	33	157	15	207
CRW_00428	-	0.38	0.38	0.38	98	465840	170	32	125	13	162
CRW_00430	-	0.45	0.42	0.49	112	456262	128	20	96	12	154
CRW_00433	-	0.29	0.26	0.32	68	467817	148	21	122	5	195
CRW_00434	-	0.31	0.29	0.33	75	457220	157	19	132	6	188
CRW_00435	-	0.45	0.42	0.49	110	451500	126	9	106	11	155
CRW_00437	-	0.21	0.21	0.22	54	456247	191	23	166	2	206
CRW_00438	-	0.34	0.32	0.37	87	454343	161	16	135	10	181
CRW_00441	-	0.17	0.16	0.18	42	454353	190	32	154	4	220
CRW_00442	-	0.38	0.36	0.40	94	453393	149	25	116	8	167
CRW_00443	-	0.38	0.36	0.41	93	456264	154	19	114	21	167
CRW_00444	-	0.30	0.29	0.32	76	459122	172	24	139	9	187
CRW_00445	-	0.30	0.28	0.33	75	458173	164	23	132	9	190
CRW_00446	-	0.36	0.33	0.38	88	468765	157	17	126	14	177
CRW_00447	-	0.33	0.32	0.35	82	452443	167	16	135	16	178
CRW_00448	-	0.34	0.33	0.36	85	457211	168	28	122	18	176
CRW_00449	-	0.15	0.15	0.16	38	444860	198	34	164	0	222
CRW_00450	-	0.34	0.32	0.36	83	458172	162	19	129	14	179
CRW_00451	-	0.24	0.22	0.26	59	457222	181	21	144	16	205
CRW_00452	-	0.29	0.26	0.31	69	453407	169	26	126	17	193
CRW_00453	-	0.23	0.21	0.24	56	452447	180	35	138	7	205
CRW_00454	-	0.16	0.16	0.17	69	1730315	473	57	289	127	366
CRW_00456	-	0.44	0.41	0.47	108	470706	137	19	102	16	157
CRW_00457	-	0.38	0.36	0.40	95	467788	159	28	117	14	169
CRW_00458	-	0.46	0.44	0.48	115	464891	141	21	103	17	149
CRW_00459	-	0.55	0.51	0.58	135	462008	117	16	82	19	128
CRW_00460	-	0.30	0.30	0.30	161	1972561	446	49	320	77	383
CRW_00462	-	0.18	0.16	0.19	43	458180	198	21	159	18	218
CRW_00463	-	0.39	0.38	0.40	97	445799	154	21	123	10	157
CRW_00464	-	0.38	0.35	0.42	92	462021	139	14	114	11	172
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	265	1116332	195	23	145	27	193
CRW_00468	-	0.48	0.48	0.47	408	4290123	488	76	378	34	447
CRW_00471	-	0.52	0.51	0.53	445	4211420	422	70	318	34	426
CRW_00474	-	0.45	0.44	0.45	371	3976793	477	67	379	31	465
CRW_00476	-	0.37	0.37	0.37	323	4278391	590	78	483	29	556
CRW_00478	-	0.52	0.52	0.53	445	4150683	417	70	323	24	418
CRW_00487	-	0.48	0.47	0.49	409	4223041	450	72	349	29	463
CRW_00488	-	0.36	0.36	0.37	318	4325352	560	78	463	19	568
CRW_00490	-	0.40	0.39	0.40	339	4144915	541	70	436	35	523
CRW_00495	-	0.38	0.37	0.38	319	4205611	549	60	460	29	539
CRW_00496	-	0.42	0.41	0.43	354	4194028	503	59	415	29	512
CRW_00499	-	0.40	0.39	0.40	343	4372553	528	65	442	21	540
CRW_00500	-	0.45	0.44	0.45	385	4205593	497	68	404	25	483
CRW_00501	-	0.46	0.46	0.47	399	4284272	487	77	380	30	469
CRW_00502	-	0.52	0.52	0.53	456	4295979	445	73	338	34	416
CRW_00503	-	0.41	0.41	0.42	354	4252133	529	73	426	30	513
CRW_00505	-	0.30	0.35	0.25	138	4784317	828	197	219	412	252
CRW_00507	-	0.32	0.32	0.32	278	4173747	595	64	516	15	587
CRW_00509	-	0.46	0.45	0.48	392	4182454	467	68	364	35	475
CRW_00511	-	0.37	0.36	0.37	309	4107578	542	55	469	18	547
CRW_00512	-	0.50	0.50	0.51	409	3814897	424	61	336	27	410
CRW_00516	-	0.51	0.51	0.52	448	4272559	453	67	352	34	428
CRW_00517	-	0.57	0.57	0.57	514	4566845	445	62	332	51	387
CRW_00518	-	0.25	0.25	0.26	220	4357775	642	74	559	9	664
CRW_00520	-	0.42	0.42	0.42	354	4208514	507	81	402	24	496
CRW_00521	-	0.32	0.31	0.32	265	4136305	581	77	479	25	579
CRW_00522	-	0.20	0.21	0.20	164	3642825	687	115	546	26	618
CRW_00525	-	0.30	0.31	0.28	254	4058917	690	83	571	36	559
CRW_00527	-	0.45	0.49	0.42	235	7782923	953	123	204	626	244
CRW_00528	-	0.30	0.34	0.27	169	9593756	1163	156	309	698	331
CRW_00529	-	0.43	0.43	0.44	460	6312625	641	99	497	45	606
CRW_00530	-	0.26	0.28	0.25	74	534802	233	55	164	14	194
CRW_00535	-	0.26	0.28	0.25	91	898105	293	66	208	19	237
CRW_00538	-	0.19	0.20	0.18	59	811850	285	65	201	19	241
CRW_00542	-	0.20	0.23	0.18	72	994346	357	100	237	20	245
CRW_00544	-	0.24	0.26	0.22	193	8884344	1110	170	513	427	546
CRW_00546	-	0.24	0.31	0.19	110	6171765	985	228	238	519	249
CRW_00547	-	0.46	0.46	0.47	397	4278426	479	61	391	27	466
CRW_00579	-	0.45	0.44	0.47	413	4290101	485	60	411	14	524
CRW_00583	-	0.45	0.44	0.47	413	4290101	485	60	411	14	524
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.28	0.27	0.29	121	1094037	315	38	264	13	324
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.37	153	1119337	287	30	236	21	299
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	243	1098483	208	22	155	31	203
CRW_00594	-	0.23	0.24	0.22	94	1028460	369	47	294	28	301
CRW_00596	-	0.21	0.22	0.20	85	1024169	356	69	273	14	301
CRW_00597	-	0.24	0.25	0.23	101	1200045	369	48	281	40	310
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	183	1665703	391	62	277	52	308
CRW_00599	-	0.35	0.36	0.34	195	3754588	700	77	310	313	351
CRW_00604	-	0.82	0.86	0.79	70	411689	188	10	9	169	11
CRW_00606	-	0.87	0.84	0.91	77	559068	251	0	8	243	15
CRW_00607	-	0.54	0.53	0.55	41	536056	268	10	23	235	36
CRW_00615	-	0.50	0.56	0.45	46	553776	279	21	35	223	36
CRW_00616	-	0.61	0.59	0.63	65	1699143	504	2	36	466	45
CRW_00617	-	0.41	0.45	0.38	29	426349	237	15	33	189	35
CRW_00678	-	0.41	0.45	0.37	55	666287	299	23	70	206	66
CRW_00680	-	0.32	0.36	0.28	44	516477	258	32	83	143	78
CRW_00683	-	0.50	0.50	0.49	68	460182	221	18	52	151	67
CRW_00684	-	0.35	0.37	0.32	50	612016	279	36	69	174	85
CRW_00702	-	0.57	0.64	0.51	48	357341	200	16	30	154	27
CRW_00704	-	0.80	0.79	0.82	74	386670	190	4	12	174	20
CRW_00705	-	0.29	0.37	0.22	32	1461052	464	50	61	353	54
CRW_00706	-	0.37	0.41	0.34	24	695539	343	11	36	296	35
CRW_00708	-	0.49	0.65	0.37	43	3457019	742	55	18	669	23
CRW_00709	-	0.23	0.22	0.24	19	1728790	569	8	53	508	66
CRW_00710	-	0.66	0.65	0.67	74	1040293	368	8	28	332	40
CRW_00711	-	0.28	0.30	0.26	37	2318636	603	35	73	495	87
CRW_00712	-	0.46	0.53	0.40	57	952749	364	30	54	280	51
CRW_00713	-	0.67	0.65	0.69	66	731349	298	5	25	268	35
CRW_00723	-	0.46	0.57	0.37	42	1583195	497	40	33	424	32
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	138	1640264	418	60	304	54	345
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.23	0.24	0.22	117	1636617	466	66	345	55	364
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.32	151	1638482	393	57	265	71	335
CRW_00761	-	0.20	0.21	0.19	98	2863901	663	82	340	241	376
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.29	0.27	0.30	122	1215612	330	26	260	44	324
CRW_00765	-	0.24	0.24	0.24	62	452416	208	36	162	10	195
CRW_00766	-	0.23	0.22	0.23	53	440165	188	28	145	15	187
CRW_00768	-	0.56	0.54	0.58	141	471663	124	14	88	22	118
CRW_00769	-	0.37	0.35	0.39	88	451499	151	24	114	13	164
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.25	0.25	0.26	101	945612	317	39	248	30	303
CRW_00773	-	0.47	0.47	0.48	121	451471	151	28	105	18	138
CRW_00774	-	0.34	0.32	0.37	85	488335	171	20	126	25	178
CRW_00777	-	0.29	0.29	0.29	88	719096	251	36	180	35	216
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.32	0.32	0.33	123	1201647	309	46	209	54	261
CRW_00779	-	0.29	0.28	0.29	120	1031355	310	39	252	19	302
CRW_00780	-	0.36	0.35	0.37	89	475561	163	24	126	13	166
CRW_00781	-	0.18	0.20	0.17	90	1978527	535	77	361	97	360
CRW_00783	-	0.35	0.34	0.36	87	453385	167	15	141	11	172
CRW_00784	-	0.34	0.33	0.36	86	456249	169	29	126	14	176
CRW_00785	-	0.30	0.29	0.32	73	452445	165	31	127	7	180
CRW_00786	-	0.41	0.42	0.41	187	1946898	430	36	230	164	263
CRW_00787	-	0.23	0.24	0.23	72	646633	257	40	208	9	234
CRW_00788	-	0.35	0.36	0.34	131	1758365	426	62	192	172	230
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.34	0.33	0.34	147	1137356	300	35	248	17	300
CRW_00790	-	0.16	0.17	0.15	74	1803544	496	75	357	64	373
CRW_00792	-	0.24	0.26	0.23	99	1581092	444	81	259	104	284
CRW_00793	-	0.32	0.33	0.31	124	1048682	323	53	217	53	253
CRW_00794	-	0.23	0.23	0.23	56	434530	209	20	172	17	190
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.19	0.20	0.19	78	1152508	377	53	282	42	316
CRW_00796	-	0.25	0.23	0.26	55	384793	177	24	131	22	180
CRW_00797	-	0.29	0.29	0.29	98	692914	265	38	203	24	244
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.51	0.51	0.52	238	1401519	271	33	185	53	232
CRW_00801	-	0.46	0.45	0.46	113	438272	150	28	103	19	136
CRW_00802	-	0.25	0.24	0.25	61	460079	192	36	144	12	192
CRW_00803	-	0.25	0.28	0.23	125	1952727	493	86	338	69	324
CRW_00804	-	0.34	0.34	0.33	137	1420043	397	43	232	122	266
CRW_00806	-	0.25	0.28	0.23	125	1913403	482	86	332	64	324
CRW_00807	-	0.25	0.26	0.25	102	1391535	411	56	253	102	296
CRW_00808	-	0.20	0.21	0.19	74	1301303	411	68	246	97	282
CRW_00813	-	0.17	0.20	0.14	27	530778	295	47	113	135	106
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.48	0.48	0.49	225	1117800	258	25	210	23	245
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	268	1135838	197	24	148	25	196
CRW_01134	-	0.34	0.33	0.34	142	964943	281	42	228	11	285
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.25	0.25	0.25	128	1606016	421	65	319	37	375
CRW_01168	-	0.33	0.33	0.33	136	900740	294	43	234	17	275
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.24	0.24	0.24	123	1593484	433	84	314	35	383
CRW_01186	-	0.23	0.23	0.23	89	836190	303	44	248	11	297
CRW_01188	-	0.11	0.11	0.11	42	837482	347	50	291	6	351
CRW_01189	-	0.19	0.19	0.19	74	862254	323	55	258	10	318
CRW_01214	-	0.35	0.33	0.36	135	931923	248	39	198	11	270
CRW_01222	-	0.24	0.24	0.25	96	912886	298	54	240	4	301
CRW_01224	-	0.32	0.30	0.33	121	912914	248	29	212	7	276
CRW_01239	-	0.19	0.19	0.19	71	840087	311	46	252	13	311
CRW_01250	-	0.24	0.23	0.24	87	781517	284	38	233	13	291
CRW_01260	-	0.14	0.13	0.14	52	912906	325	45	273	7	341
CRW_01266	-	0.24	0.24	0.24	91	818175	306	39	255	12	290
CRW_01271	-	0.30	0.30	0.29	113	827157	283	32	239	12	268
CRW_01275	-	0.32	0.32	0.32	139	1082223	310	46	248	16	293
CRW_01283	-	0.37	0.36	0.38	149	963574	261	40	203	18	260
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.37	0.37	0.36	193	1693178	383	91	258	34	322
CRW_01314	-	0.23	0.22	0.24	91	937383	301	38	253	10	316
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.35	0.35	0.35	151	977475	287	44	231	12	283
CRW_01344	-	0.34	0.33	0.34	122	791557	238	42	190	6	244
CRW_01456	-	0.29	0.30	0.29	253	4240458	631	87	530	14	598
PDB_00187	-	0.39	0.39	0.38	282	3746210	558	88	373	97	434
PDB_00401	-	0.47	0.43	0.50	413	3996557	440	40	368	32	540
PDB_00409	-	0.32	0.37	0.27	90	688221	309	74	166	69	155
PDB_00609	-	0.38	0.39	0.38	309	4156470	571	100	407	64	481
PDB_00644	-	0.35	0.35	0.34	286	4328318	597	102	447	48	534
PDB_00675	-	0.42	0.39	0.45	381	4167987	491	39	421	31	593
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.57	258	1073389	221	20	178	23	237
PDB_00704	-	0.52	0.48	0.56	465	4249241	401	49	315	37	508
PDB_00805	-	0.64	0.61	0.68	184	467756	111	11	77	23	118
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.54	285	1500255	284	22	216	46	250
PDB_00947	-	0.45	0.47	0.44	355	4310703	565	83	375	107	394
PDB_00993	-	0.39	0.39	0.39	313	3923400	544	81	407	56	489
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.39	0.37	0.41	202	1470973	322	44	251	27	345
PDB_01089	-	0.41	0.41	0.40	310	4053360	546	89	369	88	449
PDB_01102	-	0.46	0.46	0.45	401	4533684	544	64	417	63	464
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	324	1605991	243	32	181	30	238
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.60	0.58	0.61	315	1433457	227	14	185	28	225
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.47	0.44	0.50	232	1204667	242	27	202	13	295
PDB_01140	-	0.51	0.49	0.53	457	4176627	454	58	353	43	473
PDB_01143	-	0.49	0.46	0.53	472	4594103	447	44	377	26	550
PDB_01261	-	0.50	0.45	0.55	152	467750	130	4	122	4	184
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.53	235	1117815	238	14	196	28	256

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of ContextFold - scored higher in this pairwise comparison

1. Total counts & total scores for ContextFold

2. Individual counts for ContextFold [ download as .csv ]

Performance of UNAFold - scored lower in this pairwise comparison

1. Total counts & total scores for UNAFold

2. Individual counts for UNAFold [ download as .csv ]