CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Contrafold		Fold
MCC	0.462	>	0.372
Average MCC ± 95% Confidence Intervals	0.457 ± 0.018	>	0.370 ± 0.016
Sensitivity	0.442	>	0.376
Positive Predictive Value	0.484	>	0.369
Total TP	48409	>	41239
Total TN	389651093	>	389639268
Total FP	67983	<	86388
Total FP CONTRA	7901	<	11246
Total FP INCONS	43762	<	59412
Total FP COMP	16320	>	15730
Total FN	61186	<	68356
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Contrafold and Fold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Contrafold and Fold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Contrafold and Fold).
Comparison of average Matthews Correlation Coefficients (MCCs) for Contrafold and Fold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Contrafold and Fold).

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Performance of Contrafold - scored higher in this pairwise comparison

1. Total counts & total scores for Contrafold

Total Base Pair Counts
Total TP	48409
Total TN	389651093
Total FP	67983
Total FP CONTRA	7901
Total FP INCONS	43762
Total FP COMP	16320
Total FN	61186

Total Scores
MCC	0.462
Average MCC ± 95% Confidence Intervals	0.457 ± 0.018
Sensitivity	0.442
Positive Predictive Value	0.484
Nr of predictions	247

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2. Individual counts for Contrafold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.62	0.55	0.69	115	3173773	576	9	43	524	94
CRW_00002	-	0.72	0.62	0.82	164	408861	79	5	30	44	100
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.77	0.77	0.78	351	1085153	140	12	85	43	107
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.68	0.68	0.68	320	1141844	188	22	130	36	154
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.60	0.57	0.64	268	1170795	174	25	127	22	202
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.56	237	1107395	202	25	159	18	219
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.64	0.60	0.67	286	1172318	164	20	122	22	187
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	274	1181504	188	29	146	13	202
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.53	231	1108865	226	32	177	17	226
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.55	0.53	0.57	245	1178450	213	19	166	28	220
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.56	0.52	0.61	243	1135878	175	14	143	18	220
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.62	0.60	0.64	287	1201577	192	19	142	31	189
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.55	0.51	0.59	237	1152519	185	22	143	20	229
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.53	0.49	0.57	233	1180006	196	22	155	19	238
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.62	0.59	0.64	277	1190763	182	19	137	26	191
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.34	0.34	0.35	150	1082228	288	32	246	10	295
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.52	228	1178444	227	20	188	19	245
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.57	0.55	0.59	259	1207798	197	27	151	19	216
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.56	250	1198476	220	27	173	20	228
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.53	0.51	0.55	229	1105912	212	23	164	25	224
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.64	0.62	0.66	301	1218683	200	21	136	43	183
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.61	267	1198490	184	24	145	15	211
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.47	0.44	0.50	206	1192327	232	26	181	25	262
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.66	0.63	0.69	286	1111874	157	20	106	31	169
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.51	0.48	0.53	221	1122337	215	30	163	22	241
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.47	0.46	0.49	203	1085190	233	20	188	25	243
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.61	0.59	0.63	271	1114843	186	19	138	29	186
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.44	0.40	0.49	182	1110423	203	23	167	13	271
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.47	190	1129849	240	28	189	23	260
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.60	0.56	0.64	262	1180004	173	25	125	23	202
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.55	0.51	0.60	232	1117873	173	15	140	18	221
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.64	0.62	0.65	288	1144901	182	17	135	30	176
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.41	0.38	0.45	162	1015668	217	29	166	22	270
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.51	0.47	0.56	216	1131371	196	24	149	23	240
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.66	0.63	0.68	289	1117836	159	19	116	24	169
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.60	0.57	0.63	270	1189221	197	21	141	35	206
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.38	0.36	0.40	165	1123842	258	35	208	15	296
CRW_00294	-	0.40	0.39	0.40	230	2620330	464	67	278	119	356
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.25	0.25	0.25	122	1620403	431	72	303	56	372
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.43	0.40	0.45	210	1762038	324	41	214	69	309
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.29	129	1445402	388	63	256	69	333
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.36	0.35	0.37	184	1805456	377	53	257	67	337
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.50	0.49	0.51	246	1627630	284	52	182	50	256
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.33	0.32	0.33	166	1988512	422	56	281	85	351
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.26	0.26	0.26	122	1769544	429	70	285	74	355
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.38	0.36	0.41	183	1892040	342	42	220	80	331
CRW_00338	-	0.20	0.21	0.19	84	1052972	396	77	293	26	311
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.39	0.40	0.39	197	1586366	355	58	250	47	301
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	202	1584577	358	54	257	47	299
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.35	0.34	0.36	170	1615029	355	51	253	51	333
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.39	0.40	0.38	202	1674827	390	57	279	54	305
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.33	157	1579284	361	57	255	49	325
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.37	0.37	0.37	189	1640256	363	64	257	42	317
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.44	0.41	0.46	205	1611467	295	42	196	57	291
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.41	0.40	0.42	198	1625830	342	48	230	64	300
CRW_00374	-	0.40	0.39	0.41	217	2182480	418	42	266	110	333
CRW_00375	-	0.37	0.36	0.38	197	2298928	401	55	260	86	344
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.43	0.42	0.44	223	2126443	372	38	249	85	311
CRW_00381	-	0.40	0.38	0.41	214	2303211	410	37	269	104	343
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.28	0.30	0.27	152	1750697	447	70	337	40	363
CRW_00400	-	0.27	0.27	0.28	134	2677974	538	57	290	191	360
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.28	131	1606062	404	68	267	69	333
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.39	0.36	0.42	181	1615070	306	41	211	54	315
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.36	181	1665721	382	54	269	59	314
CRW_00417	-	0.41	0.38	0.44	99	458178	135	23	103	9	163
CRW_00418	-	0.26	0.22	0.31	56	441150	130	14	110	6	204
CRW_00419	-	0.40	0.35	0.45	93	463958	122	7	108	7	172
CRW_00421	-	0.50	0.44	0.57	117	462998	111	10	78	23	149
CRW_00422	-	0.44	0.40	0.49	105	455320	131	13	97	21	158
CRW_00424	-	0.49	0.45	0.52	164	789083	172	18	131	23	199
CRW_00426	-	0.42	0.39	0.45	103	457219	137	13	111	13	162
CRW_00427	-	0.28	0.26	0.29	69	454346	182	30	136	16	192
CRW_00428	-	0.37	0.33	0.40	87	465879	144	17	112	15	173
CRW_00430	-	0.39	0.32	0.48	85	456313	101	17	75	9	181
CRW_00433	-	0.33	0.28	0.40	73	467844	115	12	99	4	190
CRW_00434	-	0.48	0.40	0.56	106	457257	91	9	74	8	157
CRW_00435	-	0.30	0.26	0.34	68	451527	139	21	109	9	197
CRW_00437	-	0.25	0.22	0.29	57	456294	151	16	123	12	203
CRW_00438	-	0.39	0.34	0.44	92	454372	126	15	102	9	176
CRW_00441	-	0.37	0.31	0.44	80	454400	110	12	89	9	182
CRW_00442	-	0.32	0.28	0.37	74	453426	139	14	114	11	187
CRW_00443	-	0.34	0.26	0.43	68	456333	107	8	81	18	192
CRW_00444	-	0.45	0.38	0.53	100	459174	99	15	72	12	163
CRW_00445	-	0.43	0.40	0.47	105	458179	127	19	100	8	160
CRW_00446	-	0.33	0.31	0.36	81	468771	157	18	126	13	184
CRW_00447	-	0.29	0.27	0.30	71	452442	174	23	140	11	189
CRW_00448	-	0.29	0.26	0.34	67	457247	143	23	109	11	194
CRW_00449	-	0.42	0.37	0.48	95	444897	111	20	84	7	165
CRW_00450	-	0.43	0.36	0.53	94	458224	101	11	74	16	168
CRW_00451	-	0.43	0.38	0.49	99	457244	114	11	92	11	165
CRW_00452	-	0.49	0.41	0.59	108	453445	94	7	68	19	154
CRW_00453	-	0.38	0.32	0.44	84	452487	117	13	92	12	177
CRW_00454	-	0.24	0.24	0.24	105	1730300	445	60	265	120	330
CRW_00456	-	0.45	0.37	0.56	98	470760	83	10	67	6	167
CRW_00457	-	0.44	0.41	0.48	107	467803	134	17	101	16	157
CRW_00458	-	0.48	0.42	0.54	111	464926	106	9	84	13	153
CRW_00459	-	0.52	0.46	0.58	121	462032	112	10	78	24	142
CRW_00460	-	0.39	0.35	0.43	193	1972641	344	20	237	87	351
CRW_00462	-	0.46	0.40	0.53	104	458208	107	10	81	16	157
CRW_00463	-	0.44	0.40	0.49	101	445832	116	18	89	9	153
CRW_00464	-	0.46	0.38	0.55	101	462056	95	8	76	11	163
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.70	0.68	0.73	312	1116336	148	19	98	31	146
CRW_00468	-	0.55	0.54	0.56	465	4290161	413	52	307	54	390
CRW_00471	-	0.55	0.53	0.57	461	4211438	388	52	302	34	410
CRW_00474	-	0.62	0.60	0.64	505	3976820	335	60	225	50	331
CRW_00476	-	0.63	0.60	0.67	525	4278490	308	43	217	48	354
CRW_00478	-	0.69	0.66	0.73	572	4150736	259	41	172	46	291
CRW_00487	-	0.59	0.56	0.62	491	4223083	351	43	254	54	381
CRW_00488	-	0.53	0.50	0.55	445	4325406	401	42	318	41	441
CRW_00490	-	0.40	0.40	0.41	344	4144922	525	63	431	31	518
CRW_00495	-	0.54	0.52	0.56	446	4205659	395	51	294	50	412
CRW_00496	-	0.57	0.54	0.60	464	4194083	357	35	274	48	402
CRW_00499	-	0.57	0.55	0.59	484	4372585	380	44	290	46	399
CRW_00500	-	0.54	0.53	0.55	463	4205614	421	56	317	48	405
CRW_00501	-	0.58	0.56	0.60	485	4284323	369	51	269	49	383
CRW_00502	-	0.67	0.65	0.69	567	4296026	311	42	211	58	305
CRW_00503	-	0.45	0.44	0.46	383	4252162	479	61	380	38	484
CRW_00507	-	0.59	0.56	0.62	483	4173826	342	38	258	46	382
CRW_00509	-	0.55	0.53	0.58	459	4182488	368	44	287	37	408
CRW_00511	-	0.47	0.45	0.49	381	4107641	432	39	350	43	475
CRW_00512	-	0.59	0.56	0.61	460	3814952	334	52	239	43	359
CRW_00516	-	0.62	0.59	0.66	516	4272643	324	42	225	57	360
CRW_00518	-	0.47	0.45	0.50	394	4357835	427	61	338	28	490
CRW_00520	-	0.63	0.59	0.66	505	4208590	309	55	201	53	345
CRW_00521	-	0.45	0.43	0.48	360	4136374	420	58	334	28	484
CRW_00522	-	0.32	0.30	0.33	238	3642926	513	86	400	27	544
CRW_00525	-	0.28	0.30	0.27	240	4058925	709	88	572	49	573
CRW_00530	-	0.35	0.34	0.37	91	534848	170	47	109	14	177
CRW_00535	-	0.37	0.37	0.38	121	898149	221	45	155	21	207
CRW_00538	-	0.41	0.38	0.45	113	811923	164	23	116	25	187
CRW_00542	-	0.28	0.30	0.27	95	994401	299	70	189	40	222
CRW_00547	-	0.59	0.57	0.61	492	4278470	368	53	260	55	371
CRW_00579	-	0.60	0.57	0.62	533	4290130	349	53	269	27	404
CRW_00583	-	0.60	0.57	0.62	533	4290130	349	53	269	27	404
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.33	0.30	0.36	134	1094090	257	24	212	21	311
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.38	157	1119345	281	41	213	27	295
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.62	0.60	0.65	268	1098489	182	28	118	36	178
CRW_00594	-	0.23	0.24	0.22	96	1028467	363	49	283	31	299
CRW_00596	-	0.24	0.25	0.24	95	1024193	335	44	264	27	291
CRW_00597	-	0.27	0.28	0.27	115	1200049	353	41	270	42	296
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.40	193	1665739	354	59	234	61	298
CRW_00599	-	0.40	0.40	0.41	216	3754638	682	45	271	366	330
CRW_00604	-	0.84	0.85	0.82	69	411694	186	4	11	171	12
CRW_00606	-	0.93	0.90	0.97	83	559067	236	0	3	233	9
CRW_00607	-	0.81	0.82	0.81	63	536052	269	3	12	254	14
CRW_00615	-	0.86	0.85	0.88	70	553798	271	0	10	261	12
CRW_00616	-	0.60	0.58	0.62	64	1699142	445	5	35	405	46
CRW_00617	-	0.57	0.55	0.60	35	426368	211	6	17	188	29
CRW_00678	-	0.42	0.44	0.40	53	666302	315	14	66	235	68
CRW_00680	-	0.53	0.55	0.52	67	516506	229	17	46	166	55
CRW_00683	-	0.63	0.63	0.63	85	460186	216	2	47	167	50
CRW_00684	-	0.53	0.55	0.51	74	612025	266	16	56	194	61
CRW_00702	-	0.72	0.73	0.71	55	357357	187	7	16	164	20
CRW_00704	-	0.87	0.87	0.87	82	386666	195	4	8	183	12
CRW_00705	-	0.26	0.29	0.23	25	1461086	417	29	55	333	61
CRW_00706	-	0.64	0.71	0.58	42	695537	308	13	18	277	17
CRW_00708	-	0.51	0.56	0.46	37	3457054	690	17	27	646	29
CRW_00709	-	0.23	0.19	0.29	16	1728814	485	1	39	445	69
CRW_00710	-	0.69	0.64	0.74	73	1040304	312	2	24	286	41
CRW_00711	-	0.23	0.24	0.21	30	2318638	605	50	63	492	94
CRW_00712	-	0.44	0.48	0.39	52	952758	374	24	56	294	56
CRW_00713	-	0.80	0.77	0.84	78	731352	295	5	10	280	23
CRW_00723	-	0.60	0.58	0.62	43	1583241	438	9	17	412	31
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.35	170	1640283	375	51	262	62	313
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.30	0.32	145	1636697	372	51	252	69	336
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.37	0.36	0.37	176	1638485	358	65	229	64	310
CRW_00761	-	0.24	0.24	0.24	113	2863958	623	51	299	273	361
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.38	0.32	0.44	144	1215694	231	27	155	49	302
CRW_00765	-	0.43	0.39	0.47	101	452459	126	21	95	10	156
CRW_00766	-	0.27	0.23	0.31	56	440213	138	20	102	16	184
CRW_00768	-	0.61	0.55	0.68	143	471695	100	7	61	32	116
CRW_00769	-	0.48	0.43	0.53	108	451522	115	21	74	20	144
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.40	0.37	0.44	148	945666	215	18	168	29	256
CRW_00773	-	0.48	0.45	0.51	116	451497	135	19	93	23	143
CRW_00774	-	0.44	0.40	0.49	105	488352	131	8	101	22	158
CRW_00777	-	0.43	0.42	0.45	127	719119	199	27	127	45	177
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.52	0.45	0.59	174	1201730	163	16	105	42	210
CRW_00779	-	0.37	0.36	0.39	150	1031380	264	22	214	28	272
CRW_00780	-	0.32	0.29	0.35	74	475591	151	18	117	16	181
CRW_00781	-	0.26	0.25	0.26	112	1978630	474	35	278	161	338
CRW_00783	-	0.39	0.33	0.45	86	453437	121	12	93	16	173
CRW_00784	-	0.41	0.37	0.45	96	456279	134	19	96	19	166
CRW_00785	-	0.54	0.48	0.62	122	452478	89	12	64	13	131
CRW_00786	-	0.38	0.37	0.38	167	1946914	424	48	222	154	283
CRW_00787	-	0.49	0.45	0.53	138	646691	151	13	111	27	168
CRW_00788	-	0.36	0.33	0.40	119	1758455	393	31	145	217	242
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.48	0.44	0.53	196	1137416	209	14	160	35	251
CRW_00790	-	0.26	0.26	0.27	115	1803619	442	38	278	126	332
CRW_00792	-	0.36	0.34	0.38	130	1581187	378	24	190	164	253
CRW_00793	-	0.54	0.50	0.59	189	1048753	210	26	108	76	188
CRW_00794	-	0.37	0.35	0.39	85	434558	154	20	115	19	161
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.38	131	1152575	263	22	193	48	263
CRW_00796	-	0.36	0.29	0.45	69	384851	109	2	81	26	166
CRW_00797	-	0.33	0.30	0.38	101	692984	189	25	143	21	241
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.57	0.54	0.60	253	1401550	230	21	151	58	217
CRW_00801	-	0.47	0.45	0.49	113	438286	131	27	90	14	136
CRW_00802	-	0.42	0.39	0.45	99	460102	145	19	100	26	154
CRW_00803	-	0.27	0.27	0.26	123	1952808	452	64	281	107	326
CRW_00804	-	0.41	0.37	0.45	148	1420127	285	21	159	105	255
CRW_00806	-	0.28	0.28	0.29	125	1913511	410	53	257	100	324
CRW_00807	-	0.52	0.47	0.56	188	1391613	233	14	131	88	210
CRW_00808	-	0.31	0.29	0.33	103	1301378	324	43	167	114	253
CRW_00813	-	0.44	0.47	0.41	63	530812	220	29	61	130	70
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.57	265	1117797	226	19	179	28	205
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.62	0.60	0.64	280	1135838	187	19	141	27	184
CRW_01134	-	0.38	0.35	0.41	148	964992	225	35	180	10	279
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.40	194	1606043	347	52	239	56	309
CRW_01168	-	0.50	0.48	0.53	196	900783	197	25	149	23	215
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.45	0.44	0.47	221	1593534	302	49	201	52	285
CRW_01186	-	0.40	0.38	0.42	146	836224	219	23	178	18	240
CRW_01188	-	0.20	0.20	0.20	77	837476	320	47	265	8	316
CRW_01189	-	0.23	0.23	0.23	92	862249	314	44	256	14	300
CRW_01214	-	0.30	0.28	0.32	114	931943	252	28	210	14	291
CRW_01222	-	0.30	0.28	0.33	113	912930	241	48	185	8	284
CRW_01224	-	0.40	0.36	0.45	141	912960	188	17	158	13	256
CRW_01239	-	0.24	0.23	0.25	88	840107	271	42	219	10	294
CRW_01250	-	0.45	0.41	0.49	155	781556	186	19	145	22	223
CRW_01260	-	0.23	0.20	0.25	80	912961	256	30	205	21	313
CRW_01266	-	0.35	0.35	0.34	134	818168	277	41	217	19	247
CRW_01271	-	0.32	0.32	0.32	121	827157	280	31	232	17	260
CRW_01275	-	0.38	0.37	0.40	160	1082251	264	41	204	19	272
CRW_01283	-	0.33	0.30	0.36	123	963626	238	25	192	21	286
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.38	0.37	0.38	193	1693217	355	53	257	45	322
CRW_01314	-	0.30	0.28	0.33	114	937422	242	30	199	13	293
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.46	0.44	0.48	189	977509	217	30	173	14	245
CRW_01344	-	0.28	0.27	0.30	98	791579	243	31	203	9	268
CRW_01456	-	0.33	0.33	0.34	282	4240489	586	69	488	29	569
PDB_00187	-	0.39	0.40	0.39	283	3746236	520	91	343	86	433
PDB_00401	-	0.51	0.47	0.55	446	3996572	408	28	332	48	507
PDB_00409	-	0.35	0.40	0.30	99	688225	317	68	159	90	146
PDB_00609	-	0.37	0.38	0.37	297	4156478	570	86	425	59	493
PDB_00644	-	0.38	0.38	0.38	309	4328331	575	84	429	62	511
PDB_00675	-	0.51	0.47	0.56	453	4168012	414	25	338	51	521
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.53	0.50	0.56	246	1073403	229	19	177	33	249
PDB_00704	-	0.53	0.48	0.58	468	4249258	397	31	313	53	505
PDB_00805	-	0.66	0.64	0.68	193	467745	126	7	83	36	109
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.52	264	1500266	296	25	223	48	271
PDB_00947	-	0.67	0.67	0.68	503	4310772	422	63	178	181	246
PDB_00993	-	0.37	0.37	0.37	297	3923402	548	84	418	46	505
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.46	0.43	0.49	236	1470988	271	34	212	25	311
PDB_01089	-	0.58	0.58	0.59	438	4053385	428	79	226	123	321
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.56	301	1605989	279	31	207	41	261
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.60	303	1433467	242	16	185	41	237
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.49	0.44	0.55	232	1204703	216	20	173	23	295
PDB_01140	-	0.65	0.62	0.69	573	4176662	336	53	207	76	357
PDB_01261	-	0.79	0.69	0.90	233	467769	32	2	24	6	103
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.49	0.47	0.51	232	1117807	258	16	205	37	259

^top

Performance of Fold - scored lower in this pairwise comparison

1. Total counts & total scores for Fold

Total Base Pair Counts
Total TP	41239
Total TN	389639268
Total FP	86388
Total FP CONTRA	11246
Total FP INCONS	59412
Total FP COMP	15730
Total FN	68356

Total Scores
MCC	0.372
Average MCC ± 95% Confidence Intervals	0.370 ± 0.016
Sensitivity	0.376
Positive Predictive Value	0.369
Nr of predictions	247

^top

2. Individual counts for Fold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.53	0.53	0.54	111	3173733	670	15	81	574	98
CRW_00002	-	0.58	0.56	0.61	148	408817	138	17	78	43	116
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.56	0.57	0.56	259	1085140	238	22	180	36	199
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.62	0.63	0.61	299	1141829	219	35	153	31	175
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.52	239	1170753	241	24	199	18	231
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.40	0.41	0.40	185	1107355	286	30	246	10	271
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.44	207	1172278	279	31	230	18	266
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.54	0.54	0.54	259	1181475	236	33	186	17	217
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.43	0.43	0.43	198	1108845	279	32	230	17	259
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.42	0.43	0.42	200	1178403	299	28	249	22	265
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.38	176	1135818	299	27	257	15	287
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.54	253	1201553	246	34	185	27	223
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	204	1152472	262	26	219	17	262
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.54	246	1179962	231	33	175	23	225
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.39	188	1190720	309	32	256	21	280
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.28	0.28	0.28	125	1082214	333	31	286	16	320
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	226	1178426	251	26	202	23	247
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.45	0.46	0.44	219	1207740	296	42	234	20	256
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.54	247	1198465	241	32	182	27	231
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.37	0.37	0.37	167	1105882	297	32	247	18	286
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.48	238	1218645	286	36	222	28	246
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.37	0.38	0.37	181	1198432	321	48	265	8	297
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.39	0.39	0.40	183	1192281	294	41	235	18	285
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.54	0.54	0.54	245	1111832	232	27	182	23	210
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	168	1122293	309	37	253	19	294
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.52	0.52	0.52	233	1085151	238	41	176	21	213
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.59	0.59	0.59	271	1114809	212	28	163	21	186
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.32	0.32	0.32	144	1110348	313	38	265	10	309
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	159	1129828	293	31	238	24	291
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.59	262	1179969	207	27	158	22	202
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.33	0.33	0.32	151	1117794	327	43	272	12	302
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.53	243	1144885	238	27	186	25	221
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.32	0.32	0.33	140	1015595	312	49	241	22	292
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.29	130	1131315	331	40	275	16	326
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.48	0.49	0.48	225	1117789	265	38	208	19	233
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	237	1189193	251	38	185	28	239
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.41	0.39	0.42	181	1123819	271	41	209	21	280
CRW_00294	-	0.28	0.31	0.26	179	2620222	594	116	388	90	407
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.22	0.24	0.21	118	1620334	479	100	348	31	376
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.29	156	1761959	461	80	308	73	363
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.09	0.09	0.08	43	1445337	532	80	390	62	419
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	153	1805378	473	77	342	54	368
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	203	1627589	370	67	251	52	299
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.30	166	1988453	469	82	314	73	351
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.19	0.21	0.18	99	1769473	516	102	347	67	378
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.32	0.33	0.31	169	1891947	449	66	303	80	345
CRW_00338	-	0.15	0.17	0.14	67	1052953	418	90	316	12	328
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.33	171	1586345	407	61	294	52	327
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.33	0.35	0.32	175	1584535	423	75	305	43	326
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.27	142	1614977	433	60	324	49	361
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	186	1674831	392	68	280	44	321
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.27	0.29	0.25	138	1579211	437	87	317	33	344
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	148	1640226	440	80	312	48	358
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.34	0.35	0.33	173	1611383	414	61	293	60	323
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.26	0.28	0.25	137	1625762	453	84	323	46	361
CRW_00374	-	0.31	0.31	0.30	170	2182445	490	57	333	100	380
CRW_00375	-	0.26	0.27	0.25	146	2298853	533	71	370	92	395
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.44	0.45	0.44	241	2126401	411	60	251	100	293
CRW_00381	-	0.32	0.33	0.31	186	2303125	522	73	347	102	371
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.28	155	1750699	443	74	328	41	360
CRW_00400	-	0.25	0.27	0.24	131	2677916	622	66	342	214	363
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.33	157	1606045	425	57	269	99	307
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.35	0.36	0.34	177	1614982	392	60	284	48	319
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.29	0.31	0.28	152	1665688	448	68	317	63	343
CRW_00417	-	0.30	0.29	0.32	76	458165	174	28	134	12	186
CRW_00418	-	0.14	0.13	0.15	34	441098	211	19	179	13	226
CRW_00419	-	0.16	0.16	0.17	42	463913	217	25	186	6	223
CRW_00421	-	0.49	0.47	0.51	126	462954	141	24	99	18	140
CRW_00422	-	0.32	0.32	0.33	83	455280	189	26	146	17	180
CRW_00424	-	0.44	0.44	0.44	161	789032	227	29	174	24	202
CRW_00426	-	0.26	0.26	0.26	68	457189	195	30	159	6	197
CRW_00427	-	0.24	0.23	0.25	61	454334	201	29	157	15	200
CRW_00428	-	0.36	0.35	0.36	91	465844	176	24	136	16	169
CRW_00430	-	0.22	0.21	0.22	56	456237	204	35	162	7	210
CRW_00433	-	0.42	0.39	0.45	102	467799	136	13	114	9	161
CRW_00434	-	0.40	0.38	0.42	100	457206	144	18	122	4	163
CRW_00435	-	0.32	0.31	0.34	83	451478	174	21	143	10	182
CRW_00437	-	0.22	0.22	0.23	57	456240	202	25	168	9	203
CRW_00438	-	0.19	0.19	0.20	50	454329	210	25	177	8	218
CRW_00441	-	0.24	0.22	0.25	58	454352	180	18	153	9	204
CRW_00442	-	0.32	0.31	0.33	82	453381	173	35	130	8	179
CRW_00443	-	0.24	0.23	0.25	59	456251	195	29	151	15	201
CRW_00444	-	0.32	0.30	0.34	80	459124	164	21	136	7	183
CRW_00445	-	0.32	0.30	0.33	80	458162	171	27	134	10	185
CRW_00446	-	0.27	0.26	0.27	70	468738	204	30	158	16	195
CRW_00447	-	0.31	0.30	0.31	79	452419	195	25	153	17	181
CRW_00448	-	0.39	0.38	0.41	98	457205	160	18	125	17	163
CRW_00449	-	0.33	0.33	0.34	85	444846	172	31	134	7	175
CRW_00450	-	0.36	0.34	0.38	90	458169	159	18	126	15	172
CRW_00451	-	0.24	0.24	0.25	63	457195	200	28	160	12	201
CRW_00452	-	0.23	0.22	0.25	57	453397	191	26	148	17	205
CRW_00453	-	0.33	0.32	0.34	83	452432	168	28	133	7	178
CRW_00454	-	0.23	0.24	0.22	103	1730260	477	71	296	110	332
CRW_00456	-	0.29	0.26	0.31	70	470711	170	16	138	16	195
CRW_00457	-	0.34	0.33	0.35	88	467778	176	23	139	14	176
CRW_00458	-	0.43	0.44	0.43	115	464864	165	23	128	14	149
CRW_00459	-	0.29	0.28	0.30	74	461992	195	26	149	20	189
CRW_00460	-	0.30	0.30	0.29	164	1972529	486	53	345	88	380
CRW_00462	-	0.24	0.23	0.25	59	458166	189	26	152	11	202
CRW_00463	-	0.37	0.36	0.38	92	445795	161	27	126	8	162
CRW_00464	-	0.41	0.38	0.43	101	462008	144	14	118	12	163
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.57	257	1116315	221	28	165	28	201
CRW_00468	-	0.51	0.52	0.51	442	4290117	464	85	341	38	413
CRW_00471	-	0.38	0.38	0.38	335	4211372	567	76	470	21	536
CRW_00474	-	0.53	0.54	0.53	452	3976751	450	66	341	43	384
CRW_00476	-	0.41	0.41	0.41	363	4278379	566	74	459	33	516
CRW_00478	-	0.46	0.46	0.46	401	4150647	502	84	389	29	462
CRW_00487	-	0.55	0.54	0.55	475	4223009	426	72	315	39	397
CRW_00488	-	0.39	0.39	0.39	344	4325323	574	76	468	30	542
CRW_00490	-	0.34	0.34	0.33	296	4144871	628	83	510	35	566
CRW_00495	-	0.45	0.44	0.45	377	4205615	499	62	396	41	481
CRW_00496	-	0.45	0.45	0.46	389	4194006	493	45	416	32	477
CRW_00499	-	0.47	0.47	0.47	419	4372520	494	54	410	30	464
CRW_00500	-	0.44	0.45	0.44	388	4205573	518	74	415	29	480
CRW_00501	-	0.44	0.44	0.44	384	4284264	504	68	412	24	484
CRW_00502	-	0.63	0.63	0.64	548	4295987	354	56	255	43	324
CRW_00503	-	0.42	0.43	0.41	372	4252089	559	75	450	34	495
CRW_00507	-	0.44	0.44	0.44	381	4173736	517	68	420	29	484
CRW_00509	-	0.37	0.37	0.37	325	4182395	593	79	479	35	542
CRW_00511	-	0.43	0.43	0.43	365	4107562	511	57	427	27	491
CRW_00512	-	0.58	0.58	0.58	475	3814889	373	63	276	34	344
CRW_00516	-	0.49	0.49	0.50	430	4272560	474	63	373	38	446
CRW_00518	-	0.35	0.35	0.35	312	4357745	592	72	499	21	572
CRW_00520	-	0.50	0.50	0.50	426	4208505	462	64	356	42	424
CRW_00521	-	0.28	0.29	0.27	241	4136249	656	103	533	20	603
CRW_00522	-	0.22	0.23	0.21	179	3642805	696	102	564	30	603
CRW_00525	-	0.25	0.26	0.24	214	4058921	736	78	612	46	599
CRW_00530	-	0.21	0.24	0.19	64	534765	273	67	199	7	204
CRW_00535	-	0.29	0.31	0.26	103	898081	308	73	213	22	225
CRW_00538	-	0.33	0.35	0.31	104	811840	258	55	176	27	196
CRW_00542	-	0.18	0.20	0.16	62	994361	387	78	254	55	255
CRW_00547	-	0.47	0.48	0.47	413	4278393	509	68	401	40	450
CRW_00579	-	0.48	0.47	0.49	445	4290085	476	57	398	21	492
CRW_00583	-	0.48	0.47	0.49	445	4290085	476	57	398	21	492
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.30	0.30	0.31	133	1094029	317	35	263	19	312
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.42	0.42	0.42	191	1119306	279	34	225	20	261
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.50	0.50	0.50	222	1098458	256	20	203	33	224
CRW_00594	-	0.28	0.29	0.26	116	1028450	360	57	272	31	279
CRW_00596	-	0.21	0.23	0.20	87	1024171	354	57	281	16	299
CRW_00597	-	0.22	0.23	0.21	94	1200029	396	45	307	44	317
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.35	0.37	0.34	181	1665691	415	68	285	62	310
CRW_00599	-	0.38	0.39	0.38	212	3754606	721	58	294	369	334
CRW_00604	-	0.88	0.89	0.87	72	411695	196	2	9	185	9
CRW_00606	-	0.84	0.84	0.84	77	559061	255	5	10	240	15
CRW_00607	-	0.52	0.52	0.51	40	536052	283	11	27	245	37
CRW_00615	-	0.65	0.70	0.61	57	553785	271	15	21	235	25
CRW_00616	-	0.48	0.52	0.45	57	1699118	505	21	50	434	53
CRW_00617	-	0.31	0.34	0.28	22	426347	269	11	46	212	42
CRW_00678	-	0.43	0.46	0.39	56	666292	324	18	69	237	65
CRW_00680	-	0.45	0.48	0.42	58	516498	256	16	64	176	64
CRW_00683	-	0.24	0.29	0.19	39	460117	283	49	115	119	96
CRW_00684	-	0.36	0.41	0.33	55	612002	303	40	74	189	80
CRW_00702	-	0.62	0.77	0.50	58	357319	208	43	15	150	17
CRW_00704	-	0.87	0.87	0.86	82	386665	190	4	9	177	12
CRW_00705	-	0.36	0.43	0.30	37	1461070	501	31	57	413	49
CRW_00706	-	0.60	0.68	0.53	40	695535	350	17	18	315	19
CRW_00708	-	0.59	0.64	0.55	42	3457059	774	17	17	740	24
CRW_00709	-	0.03	0.04	0.02	3	1728743	590	35	89	466	82
CRW_00710	-	0.58	0.62	0.54	71	1040272	379	23	37	319	43
CRW_00711	-	0.34	0.38	0.31	47	2318631	636	36	67	533	77
CRW_00712	-	0.47	0.55	0.41	59	952746	390	27	58	305	49
CRW_00713	-	0.77	0.72	0.81	73	731355	309	0	17	292	28
CRW_00723	-	0.46	0.54	0.39	40	1583207	517	24	39	454	34
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.25	0.26	0.24	127	1640244	444	62	333	49	356
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.29	156	1636612	443	67	310	66	325
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.27	0.29	0.26	140	1638417	454	75	323	56	346
CRW_00761	-	0.18	0.20	0.17	93	2863859	739	102	367	270	381
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.20	0.20	0.20	90	1215568	391	45	317	29	356
CRW_00765	-	0.26	0.26	0.26	67	452416	202	38	155	9	190
CRW_00766	-	0.25	0.25	0.26	60	440159	189	16	156	17	180
CRW_00768	-	0.54	0.53	0.56	136	471665	136	16	89	31	123
CRW_00769	-	0.54	0.53	0.54	134	451477	134	23	91	20	118
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.25	0.25	0.25	100	945594	319	37	269	13	304
CRW_00773	-	0.40	0.40	0.40	103	451467	176	27	128	21	156
CRW_00774	-	0.36	0.35	0.38	91	488329	164	18	128	18	172
CRW_00777	-	0.38	0.39	0.36	119	719073	249	40	168	41	185
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.27	0.28	0.26	107	1201617	345	45	256	44	277
CRW_00779	-	0.31	0.31	0.31	129	1031345	316	42	250	24	293
CRW_00780	-	0.25	0.24	0.26	60	475567	188	23	150	15	195
CRW_00781	-	0.24	0.26	0.22	115	1978539	519	81	320	118	335
CRW_00783	-	0.23	0.23	0.23	60	453368	207	23	177	7	199
CRW_00784	-	0.27	0.27	0.28	70	456240	194	30	150	14	192
CRW_00785	-	0.29	0.27	0.30	69	452448	173	17	142	14	184
CRW_00786	-	0.35	0.37	0.33	165	1946858	484	44	284	156	285
CRW_00787	-	0.29	0.29	0.29	89	646643	234	33	188	13	217
CRW_00788	-	0.22	0.23	0.21	84	1758353	510	56	257	197	277
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.39	0.38	0.39	172	1137342	303	31	241	31	275
CRW_00790	-	0.25	0.27	0.23	120	1803531	489	65	334	90	327
CRW_00792	-	0.24	0.25	0.23	95	1581110	472	71	255	146	288
CRW_00793	-	0.39	0.40	0.38	152	1048673	299	48	203	48	225
CRW_00794	-	0.28	0.28	0.28	70	434531	199	17	160	22	176
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.32	0.33	0.30	130	1152494	342	43	254	45	264
CRW_00796	-	0.40	0.38	0.42	89	384792	147	9	113	25	146
CRW_00797	-	0.39	0.39	0.39	133	692912	235	25	183	27	209
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.52	0.52	0.52	243	1401506	300	34	192	74	227
CRW_00801	-	0.35	0.35	0.35	86	438269	178	26	135	17	163
CRW_00802	-	0.22	0.22	0.21	56	460057	221	35	172	14	197
CRW_00803	-	0.21	0.22	0.19	100	1952749	528	80	347	101	349
CRW_00804	-	0.28	0.28	0.27	114	1420031	431	54	256	121	289
CRW_00806	-	0.20	0.21	0.19	96	1913442	521	61	347	113	353
CRW_00807	-	0.35	0.35	0.34	140	1391539	376	33	234	109	258
CRW_00808	-	0.31	0.34	0.29	120	1301275	391	84	212	95	236
CRW_00813	-	0.37	0.41	0.33	55	530799	266	29	82	155	78
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.52	250	1117779	255	29	202	24	220
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.37	0.38	0.37	175	1135806	315	41	256	18	289
CRW_01134	-	0.34	0.34	0.34	144	964931	297	39	241	17	283
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	187	1605990	391	60	291	40	316
CRW_01168	-	0.38	0.38	0.38	156	900737	282	38	222	22	255
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.27	143	1593476	430	75	311	44	363
CRW_01186	-	0.26	0.26	0.25	100	836177	308	34	260	14	286
CRW_01188	-	0.18	0.18	0.17	72	837448	352	58	287	7	321
CRW_01189	-	0.16	0.16	0.16	64	862233	359	43	301	15	328
CRW_01214	-	0.25	0.25	0.25	101	931894	308	40	260	8	304
CRW_01222	-	0.26	0.26	0.26	104	912871	314	56	245	13	293
CRW_01224	-	0.32	0.31	0.33	122	912904	267	27	223	17	275
CRW_01239	-	0.25	0.25	0.24	96	840063	314	45	252	17	286
CRW_01250	-	0.44	0.44	0.43	165	781495	235	32	183	20	213
CRW_01260	-	0.11	0.12	0.11	46	912863	372	54	313	5	347
CRW_01266	-	0.29	0.30	0.28	114	818158	296	43	245	8	267
CRW_01271	-	0.35	0.36	0.35	137	827145	270	36	223	11	244
CRW_01275	-	0.33	0.34	0.33	147	1082206	327	50	253	24	285
CRW_01283	-	0.22	0.22	0.22	92	963553	336	44	277	15	317
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	150	1693165	443	63	342	38	365
CRW_01314	-	0.24	0.23	0.24	94	937373	309	32	266	11	313
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.36	0.38	158	977486	272	36	221	15	276
CRW_01344	-	0.30	0.31	0.30	112	791539	272	37	223	12	254
CRW_01456	-	0.29	0.29	0.28	251	4240442	660	81	554	25	600
PDB_00187	-	0.33	0.35	0.31	248	3746141	631	118	446	67	468
PDB_00401	-	0.43	0.41	0.45	388	3996522	500	57	411	32	565
PDB_00409	-	0.27	0.31	0.23	77	688211	338	75	188	75	168
PDB_00609	-	0.30	0.31	0.29	245	4156432	666	103	506	57	545
PDB_00644	-	0.35	0.36	0.34	293	4328291	633	100	469	64	527
PDB_00675	-	0.44	0.42	0.47	408	4167964	494	55	401	38	566
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.50	229	1073385	256	28	203	25	266
PDB_00704	-	0.42	0.40	0.45	391	4249194	518	66	419	33	582
PDB_00805	-	0.62	0.61	0.63	183	467737	137	13	95	29	119
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.46	246	1500244	334	36	252	46	289
PDB_00947	-	0.58	0.60	0.57	448	4310725	491	64	279	148	301
PDB_00993	-	0.30	0.31	0.29	248	3923351	648	99	503	46	554
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.34	0.33	0.34	180	1470946	368	36	308	24	367
PDB_01089	-	0.49	0.50	0.49	377	4053361	515	77	313	125	382
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.44	245	1605966	343	42	275	26	317
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.46	0.45	0.47	245	1433450	306	32	244	30	295
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.31	0.30	0.33	158	1204643	339	37	290	12	369
PDB_01140	-	0.52	0.51	0.54	475	4176612	456	57	351	48	455
PDB_01261	-	0.59	0.54	0.64	182	467742	108	6	98	4	154
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.39	186	1117784	320	28	262	30	305

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Contrafold - scored higher in this pairwise comparison

1. Total counts & total scores for Contrafold

2. Individual counts for Contrafold [ download as .csv ]

Performance of Fold - scored lower in this pairwise comparison

1. Total counts & total scores for Fold

2. Individual counts for Fold [ download as .csv ]