CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Fold		RNAfold
MCC	0.372	>	0.368
Average MCC ± 95% Confidence Intervals	0.370 ± 0.016	>	0.364 ± 0.017
Sensitivity	0.376	>	0.370
Positive Predictive Value	0.369	>	0.367
Total TP	41239	>	40498
Total TN	389639268	<	389640796
Total FP	86388	>	84677
Total FP CONTRA	11246	<	11344
Total FP INCONS	59412	>	58527
Total FP COMP	15730	>	14806
Total FN	68356	<	69097
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Fold and RNAfold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Fold and RNAfold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Fold and RNAfold).
Comparison of average Matthews Correlation Coefficients (MCCs) for Fold and RNAfold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Fold and RNAfold).

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Performance of Fold - scored higher in this pairwise comparison

1. Total counts & total scores for Fold

Total Base Pair Counts
Total TP	41239
Total TN	389639268
Total FP	86388
Total FP CONTRA	11246
Total FP INCONS	59412
Total FP COMP	15730
Total FN	68356

Total Scores
MCC	0.372
Average MCC ± 95% Confidence Intervals	0.370 ± 0.016
Sensitivity	0.376
Positive Predictive Value	0.369
Nr of predictions	247

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2. Individual counts for Fold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.53	0.53	0.54	111	3173733	670	15	81	574	98
CRW_00002	-	0.58	0.56	0.61	148	408817	138	17	78	43	116
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.56	0.57	0.56	259	1085140	238	22	180	36	199
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.62	0.63	0.61	299	1141829	219	35	153	31	175
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.52	239	1170753	241	24	199	18	231
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.40	0.41	0.40	185	1107355	286	30	246	10	271
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.44	207	1172278	279	31	230	18	266
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.54	0.54	0.54	259	1181475	236	33	186	17	217
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.43	0.43	0.43	198	1108845	279	32	230	17	259
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.42	0.43	0.42	200	1178403	299	28	249	22	265
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.38	176	1135818	299	27	257	15	287
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.54	253	1201553	246	34	185	27	223
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	204	1152472	262	26	219	17	262
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.54	246	1179962	231	33	175	23	225
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.39	188	1190720	309	32	256	21	280
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.28	0.28	0.28	125	1082214	333	31	286	16	320
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	226	1178426	251	26	202	23	247
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.45	0.46	0.44	219	1207740	296	42	234	20	256
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.54	247	1198465	241	32	182	27	231
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.37	0.37	0.37	167	1105882	297	32	247	18	286
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.48	238	1218645	286	36	222	28	246
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.37	0.38	0.37	181	1198432	321	48	265	8	297
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.39	0.39	0.40	183	1192281	294	41	235	18	285
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.54	0.54	0.54	245	1111832	232	27	182	23	210
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	168	1122293	309	37	253	19	294
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.52	0.52	0.52	233	1085151	238	41	176	21	213
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.59	0.59	0.59	271	1114809	212	28	163	21	186
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.32	0.32	0.32	144	1110348	313	38	265	10	309
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	159	1129828	293	31	238	24	291
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.59	262	1179969	207	27	158	22	202
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.33	0.33	0.32	151	1117794	327	43	272	12	302
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.53	243	1144885	238	27	186	25	221
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.32	0.32	0.33	140	1015595	312	49	241	22	292
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.29	130	1131315	331	40	275	16	326
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.48	0.49	0.48	225	1117789	265	38	208	19	233
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	237	1189193	251	38	185	28	239
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.41	0.39	0.42	181	1123819	271	41	209	21	280
CRW_00294	-	0.28	0.31	0.26	179	2620222	594	116	388	90	407
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.22	0.24	0.21	118	1620334	479	100	348	31	376
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.29	156	1761959	461	80	308	73	363
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.09	0.09	0.08	43	1445337	532	80	390	62	419
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	153	1805378	473	77	342	54	368
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	203	1627589	370	67	251	52	299
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.30	166	1988453	469	82	314	73	351
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.19	0.21	0.18	99	1769473	516	102	347	67	378
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.32	0.33	0.31	169	1891947	449	66	303	80	345
CRW_00338	-	0.15	0.17	0.14	67	1052953	418	90	316	12	328
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.33	171	1586345	407	61	294	52	327
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.33	0.35	0.32	175	1584535	423	75	305	43	326
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.27	142	1614977	433	60	324	49	361
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	186	1674831	392	68	280	44	321
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.27	0.29	0.25	138	1579211	437	87	317	33	344
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	148	1640226	440	80	312	48	358
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.34	0.35	0.33	173	1611383	414	61	293	60	323
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.26	0.28	0.25	137	1625762	453	84	323	46	361
CRW_00374	-	0.31	0.31	0.30	170	2182445	490	57	333	100	380
CRW_00375	-	0.26	0.27	0.25	146	2298853	533	71	370	92	395
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.44	0.45	0.44	241	2126401	411	60	251	100	293
CRW_00381	-	0.32	0.33	0.31	186	2303125	522	73	347	102	371
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.28	155	1750699	443	74	328	41	360
CRW_00400	-	0.25	0.27	0.24	131	2677916	622	66	342	214	363
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.33	157	1606045	425	57	269	99	307
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.35	0.36	0.34	177	1614982	392	60	284	48	319
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.29	0.31	0.28	152	1665688	448	68	317	63	343
CRW_00417	-	0.30	0.29	0.32	76	458165	174	28	134	12	186
CRW_00418	-	0.14	0.13	0.15	34	441098	211	19	179	13	226
CRW_00419	-	0.16	0.16	0.17	42	463913	217	25	186	6	223
CRW_00421	-	0.49	0.47	0.51	126	462954	141	24	99	18	140
CRW_00422	-	0.32	0.32	0.33	83	455280	189	26	146	17	180
CRW_00424	-	0.44	0.44	0.44	161	789032	227	29	174	24	202
CRW_00426	-	0.26	0.26	0.26	68	457189	195	30	159	6	197
CRW_00427	-	0.24	0.23	0.25	61	454334	201	29	157	15	200
CRW_00428	-	0.36	0.35	0.36	91	465844	176	24	136	16	169
CRW_00430	-	0.22	0.21	0.22	56	456237	204	35	162	7	210
CRW_00433	-	0.42	0.39	0.45	102	467799	136	13	114	9	161
CRW_00434	-	0.40	0.38	0.42	100	457206	144	18	122	4	163
CRW_00435	-	0.32	0.31	0.34	83	451478	174	21	143	10	182
CRW_00437	-	0.22	0.22	0.23	57	456240	202	25	168	9	203
CRW_00438	-	0.19	0.19	0.20	50	454329	210	25	177	8	218
CRW_00441	-	0.24	0.22	0.25	58	454352	180	18	153	9	204
CRW_00442	-	0.32	0.31	0.33	82	453381	173	35	130	8	179
CRW_00443	-	0.24	0.23	0.25	59	456251	195	29	151	15	201
CRW_00444	-	0.32	0.30	0.34	80	459124	164	21	136	7	183
CRW_00445	-	0.32	0.30	0.33	80	458162	171	27	134	10	185
CRW_00446	-	0.27	0.26	0.27	70	468738	204	30	158	16	195
CRW_00447	-	0.31	0.30	0.31	79	452419	195	25	153	17	181
CRW_00448	-	0.39	0.38	0.41	98	457205	160	18	125	17	163
CRW_00449	-	0.33	0.33	0.34	85	444846	172	31	134	7	175
CRW_00450	-	0.36	0.34	0.38	90	458169	159	18	126	15	172
CRW_00451	-	0.24	0.24	0.25	63	457195	200	28	160	12	201
CRW_00452	-	0.23	0.22	0.25	57	453397	191	26	148	17	205
CRW_00453	-	0.33	0.32	0.34	83	452432	168	28	133	7	178
CRW_00454	-	0.23	0.24	0.22	103	1730260	477	71	296	110	332
CRW_00456	-	0.29	0.26	0.31	70	470711	170	16	138	16	195
CRW_00457	-	0.34	0.33	0.35	88	467778	176	23	139	14	176
CRW_00458	-	0.43	0.44	0.43	115	464864	165	23	128	14	149
CRW_00459	-	0.29	0.28	0.30	74	461992	195	26	149	20	189
CRW_00460	-	0.30	0.30	0.29	164	1972529	486	53	345	88	380
CRW_00462	-	0.24	0.23	0.25	59	458166	189	26	152	11	202
CRW_00463	-	0.37	0.36	0.38	92	445795	161	27	126	8	162
CRW_00464	-	0.41	0.38	0.43	101	462008	144	14	118	12	163
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.57	257	1116315	221	28	165	28	201
CRW_00468	-	0.51	0.52	0.51	442	4290117	464	85	341	38	413
CRW_00471	-	0.38	0.38	0.38	335	4211372	567	76	470	21	536
CRW_00474	-	0.53	0.54	0.53	452	3976751	450	66	341	43	384
CRW_00476	-	0.41	0.41	0.41	363	4278379	566	74	459	33	516
CRW_00478	-	0.46	0.46	0.46	401	4150647	502	84	389	29	462
CRW_00487	-	0.55	0.54	0.55	475	4223009	426	72	315	39	397
CRW_00488	-	0.39	0.39	0.39	344	4325323	574	76	468	30	542
CRW_00490	-	0.34	0.34	0.33	296	4144871	628	83	510	35	566
CRW_00495	-	0.45	0.44	0.45	377	4205615	499	62	396	41	481
CRW_00496	-	0.45	0.45	0.46	389	4194006	493	45	416	32	477
CRW_00499	-	0.47	0.47	0.47	419	4372520	494	54	410	30	464
CRW_00500	-	0.44	0.45	0.44	388	4205573	518	74	415	29	480
CRW_00501	-	0.44	0.44	0.44	384	4284264	504	68	412	24	484
CRW_00502	-	0.63	0.63	0.64	548	4295987	354	56	255	43	324
CRW_00503	-	0.42	0.43	0.41	372	4252089	559	75	450	34	495
CRW_00507	-	0.44	0.44	0.44	381	4173736	517	68	420	29	484
CRW_00509	-	0.37	0.37	0.37	325	4182395	593	79	479	35	542
CRW_00511	-	0.43	0.43	0.43	365	4107562	511	57	427	27	491
CRW_00512	-	0.58	0.58	0.58	475	3814889	373	63	276	34	344
CRW_00516	-	0.49	0.49	0.50	430	4272560	474	63	373	38	446
CRW_00518	-	0.35	0.35	0.35	312	4357745	592	72	499	21	572
CRW_00520	-	0.50	0.50	0.50	426	4208505	462	64	356	42	424
CRW_00521	-	0.28	0.29	0.27	241	4136249	656	103	533	20	603
CRW_00522	-	0.22	0.23	0.21	179	3642805	696	102	564	30	603
CRW_00525	-	0.25	0.26	0.24	214	4058921	736	78	612	46	599
CRW_00530	-	0.21	0.24	0.19	64	534765	273	67	199	7	204
CRW_00535	-	0.29	0.31	0.26	103	898081	308	73	213	22	225
CRW_00538	-	0.33	0.35	0.31	104	811840	258	55	176	27	196
CRW_00542	-	0.18	0.20	0.16	62	994361	387	78	254	55	255
CRW_00547	-	0.47	0.48	0.47	413	4278393	509	68	401	40	450
CRW_00579	-	0.48	0.47	0.49	445	4290085	476	57	398	21	492
CRW_00583	-	0.48	0.47	0.49	445	4290085	476	57	398	21	492
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.30	0.30	0.31	133	1094029	317	35	263	19	312
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.42	0.42	0.42	191	1119306	279	34	225	20	261
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.50	0.50	0.50	222	1098458	256	20	203	33	224
CRW_00594	-	0.28	0.29	0.26	116	1028450	360	57	272	31	279
CRW_00596	-	0.21	0.23	0.20	87	1024171	354	57	281	16	299
CRW_00597	-	0.22	0.23	0.21	94	1200029	396	45	307	44	317
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.35	0.37	0.34	181	1665691	415	68	285	62	310
CRW_00599	-	0.38	0.39	0.38	212	3754606	721	58	294	369	334
CRW_00604	-	0.88	0.89	0.87	72	411695	196	2	9	185	9
CRW_00606	-	0.84	0.84	0.84	77	559061	255	5	10	240	15
CRW_00607	-	0.52	0.52	0.51	40	536052	283	11	27	245	37
CRW_00615	-	0.65	0.70	0.61	57	553785	271	15	21	235	25
CRW_00616	-	0.48	0.52	0.45	57	1699118	505	21	50	434	53
CRW_00617	-	0.31	0.34	0.28	22	426347	269	11	46	212	42
CRW_00678	-	0.43	0.46	0.39	56	666292	324	18	69	237	65
CRW_00680	-	0.45	0.48	0.42	58	516498	256	16	64	176	64
CRW_00683	-	0.24	0.29	0.19	39	460117	283	49	115	119	96
CRW_00684	-	0.36	0.41	0.33	55	612002	303	40	74	189	80
CRW_00702	-	0.62	0.77	0.50	58	357319	208	43	15	150	17
CRW_00704	-	0.87	0.87	0.86	82	386665	190	4	9	177	12
CRW_00705	-	0.36	0.43	0.30	37	1461070	501	31	57	413	49
CRW_00706	-	0.60	0.68	0.53	40	695535	350	17	18	315	19
CRW_00708	-	0.59	0.64	0.55	42	3457059	774	17	17	740	24
CRW_00709	-	0.03	0.04	0.02	3	1728743	590	35	89	466	82
CRW_00710	-	0.58	0.62	0.54	71	1040272	379	23	37	319	43
CRW_00711	-	0.34	0.38	0.31	47	2318631	636	36	67	533	77
CRW_00712	-	0.47	0.55	0.41	59	952746	390	27	58	305	49
CRW_00713	-	0.77	0.72	0.81	73	731355	309	0	17	292	28
CRW_00723	-	0.46	0.54	0.39	40	1583207	517	24	39	454	34
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.25	0.26	0.24	127	1640244	444	62	333	49	356
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.29	156	1636612	443	67	310	66	325
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.27	0.29	0.26	140	1638417	454	75	323	56	346
CRW_00761	-	0.18	0.20	0.17	93	2863859	739	102	367	270	381
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.20	0.20	0.20	90	1215568	391	45	317	29	356
CRW_00765	-	0.26	0.26	0.26	67	452416	202	38	155	9	190
CRW_00766	-	0.25	0.25	0.26	60	440159	189	16	156	17	180
CRW_00768	-	0.54	0.53	0.56	136	471665	136	16	89	31	123
CRW_00769	-	0.54	0.53	0.54	134	451477	134	23	91	20	118
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.25	0.25	0.25	100	945594	319	37	269	13	304
CRW_00773	-	0.40	0.40	0.40	103	451467	176	27	128	21	156
CRW_00774	-	0.36	0.35	0.38	91	488329	164	18	128	18	172
CRW_00777	-	0.38	0.39	0.36	119	719073	249	40	168	41	185
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.27	0.28	0.26	107	1201617	345	45	256	44	277
CRW_00779	-	0.31	0.31	0.31	129	1031345	316	42	250	24	293
CRW_00780	-	0.25	0.24	0.26	60	475567	188	23	150	15	195
CRW_00781	-	0.24	0.26	0.22	115	1978539	519	81	320	118	335
CRW_00783	-	0.23	0.23	0.23	60	453368	207	23	177	7	199
CRW_00784	-	0.27	0.27	0.28	70	456240	194	30	150	14	192
CRW_00785	-	0.29	0.27	0.30	69	452448	173	17	142	14	184
CRW_00786	-	0.35	0.37	0.33	165	1946858	484	44	284	156	285
CRW_00787	-	0.29	0.29	0.29	89	646643	234	33	188	13	217
CRW_00788	-	0.22	0.23	0.21	84	1758353	510	56	257	197	277
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.39	0.38	0.39	172	1137342	303	31	241	31	275
CRW_00790	-	0.25	0.27	0.23	120	1803531	489	65	334	90	327
CRW_00792	-	0.24	0.25	0.23	95	1581110	472	71	255	146	288
CRW_00793	-	0.39	0.40	0.38	152	1048673	299	48	203	48	225
CRW_00794	-	0.28	0.28	0.28	70	434531	199	17	160	22	176
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.32	0.33	0.30	130	1152494	342	43	254	45	264
CRW_00796	-	0.40	0.38	0.42	89	384792	147	9	113	25	146
CRW_00797	-	0.39	0.39	0.39	133	692912	235	25	183	27	209
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.52	0.52	0.52	243	1401506	300	34	192	74	227
CRW_00801	-	0.35	0.35	0.35	86	438269	178	26	135	17	163
CRW_00802	-	0.22	0.22	0.21	56	460057	221	35	172	14	197
CRW_00803	-	0.21	0.22	0.19	100	1952749	528	80	347	101	349
CRW_00804	-	0.28	0.28	0.27	114	1420031	431	54	256	121	289
CRW_00806	-	0.20	0.21	0.19	96	1913442	521	61	347	113	353
CRW_00807	-	0.35	0.35	0.34	140	1391539	376	33	234	109	258
CRW_00808	-	0.31	0.34	0.29	120	1301275	391	84	212	95	236
CRW_00813	-	0.37	0.41	0.33	55	530799	266	29	82	155	78
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.52	250	1117779	255	29	202	24	220
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.37	0.38	0.37	175	1135806	315	41	256	18	289
CRW_01134	-	0.34	0.34	0.34	144	964931	297	39	241	17	283
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	187	1605990	391	60	291	40	316
CRW_01168	-	0.38	0.38	0.38	156	900737	282	38	222	22	255
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.27	143	1593476	430	75	311	44	363
CRW_01186	-	0.26	0.26	0.25	100	836177	308	34	260	14	286
CRW_01188	-	0.18	0.18	0.17	72	837448	352	58	287	7	321
CRW_01189	-	0.16	0.16	0.16	64	862233	359	43	301	15	328
CRW_01214	-	0.25	0.25	0.25	101	931894	308	40	260	8	304
CRW_01222	-	0.26	0.26	0.26	104	912871	314	56	245	13	293
CRW_01224	-	0.32	0.31	0.33	122	912904	267	27	223	17	275
CRW_01239	-	0.25	0.25	0.24	96	840063	314	45	252	17	286
CRW_01250	-	0.44	0.44	0.43	165	781495	235	32	183	20	213
CRW_01260	-	0.11	0.12	0.11	46	912863	372	54	313	5	347
CRW_01266	-	0.29	0.30	0.28	114	818158	296	43	245	8	267
CRW_01271	-	0.35	0.36	0.35	137	827145	270	36	223	11	244
CRW_01275	-	0.33	0.34	0.33	147	1082206	327	50	253	24	285
CRW_01283	-	0.22	0.22	0.22	92	963553	336	44	277	15	317
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	150	1693165	443	63	342	38	365
CRW_01314	-	0.24	0.23	0.24	94	937373	309	32	266	11	313
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.36	0.38	158	977486	272	36	221	15	276
CRW_01344	-	0.30	0.31	0.30	112	791539	272	37	223	12	254
CRW_01456	-	0.29	0.29	0.28	251	4240442	660	81	554	25	600
PDB_00187	-	0.33	0.35	0.31	248	3746141	631	118	446	67	468
PDB_00401	-	0.43	0.41	0.45	388	3996522	500	57	411	32	565
PDB_00409	-	0.27	0.31	0.23	77	688211	338	75	188	75	168
PDB_00609	-	0.30	0.31	0.29	245	4156432	666	103	506	57	545
PDB_00644	-	0.35	0.36	0.34	293	4328291	633	100	469	64	527
PDB_00675	-	0.44	0.42	0.47	408	4167964	494	55	401	38	566
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.50	229	1073385	256	28	203	25	266
PDB_00704	-	0.42	0.40	0.45	391	4249194	518	66	419	33	582
PDB_00805	-	0.62	0.61	0.63	183	467737	137	13	95	29	119
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.46	246	1500244	334	36	252	46	289
PDB_00947	-	0.58	0.60	0.57	448	4310725	491	64	279	148	301
PDB_00993	-	0.30	0.31	0.29	248	3923351	648	99	503	46	554
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.34	0.33	0.34	180	1470946	368	36	308	24	367
PDB_01089	-	0.49	0.50	0.49	377	4053361	515	77	313	125	382
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.44	245	1605966	343	42	275	26	317
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.46	0.45	0.47	245	1433450	306	32	244	30	295
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.31	0.30	0.33	158	1204643	339	37	290	12	369
PDB_01140	-	0.52	0.51	0.54	475	4176612	456	57	351	48	455
PDB_01261	-	0.59	0.54	0.64	182	467742	108	6	98	4	154
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.39	186	1117784	320	28	262	30	305

^top

Performance of RNAfold - scored lower in this pairwise comparison

1. Total counts & total scores for RNAfold

Total Base Pair Counts
Total TP	40498
Total TN	389640796
Total FP	84677
Total FP CONTRA	11344
Total FP INCONS	58527
Total FP COMP	14806
Total FN	69097

Total Scores
MCC	0.368
Average MCC ± 95% Confidence Intervals	0.364 ± 0.017
Sensitivity	0.370
Positive Predictive Value	0.367
Nr of predictions	247

^top

2. Individual counts for RNAfold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.51	0.51	0.52	107	3173733	675	17	83	575	102
CRW_00002	-	0.50	0.49	0.50	130	408802	144	31	97	16	134
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.78	0.76	0.79	350	1085158	132	17	76	39	108
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.63	0.63	0.63	300	1141838	201	31	147	23	174
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.35	0.35	0.36	164	1170755	315	33	263	19	306
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.54	238	1107379	215	34	165	16	218
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.60	0.60	0.61	283	1172280	205	23	160	22	190
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.53	252	1181474	240	37	190	13	224
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.46	210	1108845	266	27	223	16	247
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.47	0.47	0.47	220	1178412	266	29	219	18	245
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.59	270	1135819	209	32	157	20	193
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	277	1201568	204	13	167	24	199
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.39	0.38	0.39	179	1152463	296	36	243	17	287
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.55	249	1179962	229	32	173	24	222
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.47	0.46	0.47	217	1190733	262	26	220	16	251
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.29	131	1082204	330	37	284	9	314
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.42	0.42	0.42	197	1178408	288	34	241	13	276
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.44	208	1207762	286	29	236	21	267
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.57	259	1198471	217	29	167	21	219
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.39	0.39	0.39	176	1105876	287	34	242	11	277
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.57	0.57	0.58	276	1218664	233	24	177	32	208
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.40	190	1198454	296	51	231	14	288
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.41	0.41	0.42	190	1192286	279	40	224	15	278
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.38	0.37	0.40	170	1111856	279	38	222	19	285
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	224	1122302	241	35	190	16	238
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.55	240	1085168	217	29	164	24	206
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.51	226	1114829	235	24	192	19	231
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.37	0.37	0.37	169	1110340	304	41	245	18	284
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.43	186	1129828	264	31	211	22	264
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.35	157	1179973	303	36	250	17	307
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.50	222	1117818	233	28	192	13	231
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.30	0.30	0.29	138	1144872	346	41	290	15	326
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.28	0.28	0.29	120	1015605	317	42	258	17	312
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.28	0.27	0.28	124	1131316	333	36	284	13	332
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.63	0.62	0.63	284	1117810	186	24	142	20	174
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.39	0.38	0.40	181	1189200	291	36	236	19	295
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.30	0.30	0.31	136	1123816	309	46	252	11	325
CRW_00294	-	0.27	0.29	0.26	168	2620251	580	99	387	94	418
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.17	0.18	0.16	88	1620349	501	88	375	38	406
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.29	160	1761955	447	75	313	59	359
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.26	0.26	0.25	121	1445372	410	63	294	53	341
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.25	143	1805381	466	88	338	40	378
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.38	0.38	0.37	190	1627600	364	68	252	44	312
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.30	165	1988473	454	70	307	77	352
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.24	0.25	0.22	121	1769478	461	108	314	39	356
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.32	171	1891953	432	77	284	71	343
CRW_00338	-	0.14	0.15	0.13	60	1052948	422	74	344	4	335
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.35	0.36	0.33	181	1586320	404	77	293	34	317
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.29	162	1584535	419	78	315	26	339
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.24	0.24	0.24	123	1614984	435	64	332	39	380
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.38	199	1674839	381	67	260	54	308
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.35	0.36	0.33	174	1579233	393	84	262	47	308
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.25	136	1640229	442	80	321	41	370
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.32	166	1611391	395	72	281	42	330
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.35	0.36	0.35	181	1625783	379	70	272	37	317
CRW_00374	-	0.44	0.45	0.43	245	2182441	411	62	257	92	305
CRW_00375	-	0.25	0.26	0.25	143	2298857	521	77	363	81	398
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.42	0.43	0.41	227	2126398	426	63	265	98	307
CRW_00381	-	0.32	0.33	0.31	184	2303140	511	67	340	104	373
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.25	0.27	0.24	137	1750683	473	87	349	37	378
CRW_00400	-	0.23	0.24	0.22	119	2677923	613	68	345	200	375
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.33	0.29	154	1606000	439	76	298	65	310
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.32	169	1614974	406	78	282	46	327
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	143	1665688	437	80	314	43	352
CRW_00417	-	0.38	0.37	0.39	97	458157	160	21	128	11	165
CRW_00418	-	0.21	0.20	0.23	51	441107	179	25	147	7	209
CRW_00419	-	0.22	0.21	0.23	55	463931	187	18	162	7	210
CRW_00421	-	0.34	0.32	0.36	86	462964	166	22	131	13	180
CRW_00422	-	0.26	0.25	0.28	65	455302	185	23	145	17	198
CRW_00424	-	0.38	0.38	0.37	138	789026	258	22	210	26	225
CRW_00426	-	0.40	0.38	0.41	102	457198	158	27	119	12	163
CRW_00427	-	0.21	0.21	0.22	54	454333	207	33	161	13	207
CRW_00428	-	0.39	0.38	0.40	98	465850	158	28	119	11	162
CRW_00430	-	0.22	0.21	0.23	56	456245	198	23	166	9	210
CRW_00433	-	0.29	0.26	0.33	69	467817	147	21	121	5	194
CRW_00434	-	0.39	0.36	0.42	94	457220	142	17	115	10	169
CRW_00435	-	0.32	0.30	0.33	80	451486	161	19	140	2	185
CRW_00437	-	0.21	0.21	0.22	54	456242	201	25	169	7	206
CRW_00438	-	0.35	0.34	0.37	90	454335	166	19	137	10	178
CRW_00441	-	0.25	0.23	0.27	61	454355	169	27	138	4	201
CRW_00442	-	0.37	0.36	0.39	94	453386	156	25	123	8	167
CRW_00443	-	0.39	0.36	0.42	93	456267	151	22	108	21	167
CRW_00444	-	0.25	0.24	0.27	63	459128	178	32	138	8	200
CRW_00445	-	0.26	0.25	0.28	65	458167	180	24	147	9	200
CRW_00446	-	0.52	0.49	0.56	131	468760	121	11	94	16	134
CRW_00447	-	0.30	0.28	0.31	74	452437	184	17	148	19	186
CRW_00448	-	0.35	0.34	0.37	88	457211	166	26	121	19	173
CRW_00449	-	0.28	0.27	0.29	71	444849	178	27	149	2	189
CRW_00450	-	0.32	0.30	0.34	78	458171	169	22	132	15	184
CRW_00451	-	0.21	0.20	0.21	52	457204	203	26	164	13	212
CRW_00452	-	0.26	0.25	0.28	66	453389	185	27	146	12	196
CRW_00453	-	0.27	0.25	0.29	65	452448	171	30	133	8	196
CRW_00454	-	0.16	0.16	0.16	69	1730286	502	53	322	127	366
CRW_00456	-	0.45	0.42	0.48	112	470704	135	20	99	16	153
CRW_00457	-	0.34	0.32	0.37	85	467798	158	17	128	13	179
CRW_00458	-	0.37	0.35	0.38	93	464886	163	30	121	12	171
CRW_00459	-	0.29	0.27	0.31	72	462008	178	27	134	17	191
CRW_00460	-	0.29	0.30	0.29	162	1972537	458	68	324	66	382
CRW_00462	-	0.14	0.13	0.14	34	458165	214	27	177	10	227
CRW_00463	-	0.28	0.28	0.29	71	445794	181	25	150	6	183
CRW_00464	-	0.39	0.36	0.42	95	462015	141	15	116	10	169
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.61	0.59	0.62	272	1116326	195	24	143	28	186
CRW_00468	-	0.50	0.51	0.50	432	4290117	467	89	347	31	423
CRW_00471	-	0.41	0.41	0.41	357	4211386	540	66	444	30	514
CRW_00474	-	0.46	0.47	0.45	390	3976749	503	71	400	32	446
CRW_00476	-	0.37	0.37	0.37	329	4278395	582	74	477	31	550
CRW_00478	-	0.42	0.43	0.42	367	4150655	526	84	415	27	496
CRW_00487	-	0.38	0.38	0.39	331	4223018	547	87	435	25	541
CRW_00488	-	0.33	0.33	0.34	292	4325352	585	75	492	18	594
CRW_00490	-	0.46	0.46	0.46	393	4144913	490	67	387	36	469
CRW_00495	-	0.38	0.37	0.38	318	4205621	538	59	452	27	540
CRW_00496	-	0.37	0.37	0.37	323	4193993	569	61	479	29	543
CRW_00499	-	0.43	0.42	0.43	375	4372526	526	74	428	24	508
CRW_00500	-	0.39	0.39	0.39	340	4205576	558	84	450	24	528
CRW_00501	-	0.43	0.43	0.43	370	4284264	528	59	435	34	498
CRW_00502	-	0.54	0.53	0.54	465	4295982	431	48	351	32	407
CRW_00503	-	0.40	0.40	0.40	345	4252125	544	72	444	28	522
CRW_00507	-	0.41	0.40	0.41	349	4173750	528	68	438	22	516
CRW_00509	-	0.44	0.44	0.43	378	4182408	523	86	406	31	489
CRW_00511	-	0.38	0.38	0.39	327	4107565	544	63	456	25	529
CRW_00512	-	0.56	0.56	0.56	455	3814893	384	73	282	29	364
CRW_00516	-	0.59	0.59	0.59	521	4272545	396	69	291	36	355
CRW_00518	-	0.27	0.27	0.28	242	4357751	646	73	562	11	642
CRW_00520	-	0.43	0.43	0.43	364	4208505	518	88	394	36	486
CRW_00521	-	0.36	0.36	0.36	300	4136295	552	86	445	21	544
CRW_00522	-	0.25	0.26	0.24	202	3642812	663	123	513	27	580
CRW_00525	-	0.25	0.27	0.23	217	4058893	747	101	614	32	596
CRW_00530	-	0.29	0.31	0.27	82	534794	236	54	165	17	186
CRW_00535	-	0.29	0.31	0.27	102	898090	299	76	202	21	226
CRW_00538	-	0.19	0.21	0.18	63	811827	305	77	208	20	237
CRW_00542	-	0.19	0.21	0.17	68	994343	375	98	246	31	249
CRW_00547	-	0.38	0.39	0.38	333	4278396	570	74	472	24	530
CRW_00579	-	0.42	0.41	0.43	380	4290100	522	62	443	17	557
CRW_00583	-	0.42	0.41	0.43	380	4290100	522	62	443	17	557
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.18	0.18	0.18	78	1094024	373	34	324	15	367
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.31	0.31	0.31	138	1119315	322	37	266	19	314
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.37	0.38	0.37	168	1098447	302	42	246	14	278
CRW_00594	-	0.23	0.25	0.21	98	1028436	387	54	307	26	297
CRW_00596	-	0.23	0.24	0.22	92	1024184	347	40	280	27	294
CRW_00597	-	0.24	0.25	0.23	101	1200028	392	49	297	46	310
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.34	0.36	0.33	177	1665684	417	76	288	53	314
CRW_00599	-	0.34	0.34	0.33	188	3754603	739	54	325	360	358
CRW_00604	-	0.52	0.57	0.48	46	411682	217	15	35	167	35
CRW_00606	-	0.66	0.64	0.69	59	559067	263	2	25	236	33
CRW_00607	-	0.54	0.55	0.53	42	536050	277	8	30	239	35
CRW_00615	-	0.50	0.56	0.44	46	553773	284	24	35	225	36
CRW_00616	-	0.80	0.76	0.84	84	1699146	494	2	14	478	26
CRW_00617	-	0.27	0.31	0.24	20	426343	263	19	44	200	44
CRW_00678	-	0.64	0.64	0.64	77	666315	276	10	33	233	44
CRW_00680	-	0.66	0.68	0.64	83	516507	213	8	38	167	39
CRW_00683	-	0.40	0.41	0.38	55	460177	239	20	68	151	80
CRW_00684	-	0.36	0.39	0.33	53	612010	292	37	71	184	82
CRW_00702	-	0.66	0.72	0.61	54	357347	206	10	24	172	21
CRW_00704	-	0.81	0.80	0.82	75	386669	196	4	12	180	19
CRW_00705	-	0.21	0.28	0.16	24	1461048	506	39	84	383	62
CRW_00706	-	0.37	0.41	0.34	24	695540	344	7	39	298	35
CRW_00708	-	0.42	0.58	0.30	38	3457009	764	60	28	676	28
CRW_00709	-	0.08	0.08	0.08	7	1728779	569	17	67	485	78
CRW_00710	-	0.66	0.65	0.67	74	1040293	374	8	28	338	40
CRW_00711	-	0.28	0.30	0.26	37	2318636	612	35	73	504	87
CRW_00712	-	0.47	0.54	0.42	58	952751	366	28	53	285	50
CRW_00713	-	0.67	0.65	0.69	66	731349	302	5	25	272	35
CRW_00723	-	0.53	0.62	0.46	46	1583209	504	28	27	449	28
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	142	1640237	420	85	302	33	341
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.21	0.22	0.20	105	1636621	473	79	340	54	376
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.29	0.29	0.29	143	1638460	405	76	276	53	343
CRW_00761	-	0.18	0.20	0.16	95	2863836	716	107	383	226	379
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.22	0.21	0.22	95	1215590	376	51	284	41	351
CRW_00765	-	0.44	0.44	0.45	113	452424	156	21	118	17	144
CRW_00766	-	0.22	0.22	0.23	52	440167	190	20	152	18	188
CRW_00768	-	0.50	0.48	0.51	125	471661	142	15	105	22	134
CRW_00769	-	0.39	0.37	0.42	93	451501	148	21	110	17	159
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.25	0.24	0.25	98	945608	317	41	253	23	306
CRW_00773	-	0.34	0.34	0.33	88	451460	186	30	147	9	171
CRW_00774	-	0.27	0.27	0.28	70	488320	198	15	161	22	193
CRW_00777	-	0.24	0.25	0.23	77	719060	291	60	203	28	227
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.23	0.22	0.23	85	1201662	341	40	238	63	299
CRW_00779	-	0.24	0.24	0.24	103	1031342	335	40	281	14	319
CRW_00780	-	0.20	0.19	0.21	49	475564	199	20	167	12	206
CRW_00781	-	0.22	0.24	0.20	109	1978513	548	78	355	115	341
CRW_00783	-	0.31	0.31	0.32	80	453377	182	16	155	11	179
CRW_00784	-	0.36	0.34	0.38	90	456253	169	22	125	22	172
CRW_00785	-	0.35	0.33	0.36	84	452443	161	27	122	12	169
CRW_00786	-	0.33	0.34	0.33	153	1946883	473	52	263	158	297
CRW_00787	-	0.23	0.24	0.22	72	646627	264	41	213	10	234
CRW_00788	-	0.28	0.30	0.26	107	1758338	471	77	228	166	254
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.36	161	1137337	307	44	244	19	286
CRW_00790	-	0.20	0.21	0.19	93	1803562	512	60	335	117	354
CRW_00792	-	0.13	0.13	0.12	51	1581116	499	60	304	135	332
CRW_00793	-	0.33	0.34	0.33	129	1048680	326	54	213	59	248
CRW_00794	-	0.24	0.24	0.24	58	434537	202	18	165	19	188
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.22	0.23	0.21	89	1152504	360	53	275	32	305
CRW_00796	-	0.20	0.20	0.21	47	384780	189	27	149	13	188
CRW_00797	-	0.22	0.23	0.21	79	692885	304	40	249	15	263
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.48	0.47	0.48	223	1401508	313	43	201	69	247
CRW_00801	-	0.43	0.43	0.43	106	438270	153	32	108	13	143
CRW_00802	-	0.30	0.30	0.31	75	460080	183	33	132	18	178
CRW_00803	-	0.22	0.24	0.20	110	1952719	519	92	355	72	339
CRW_00804	-	0.32	0.32	0.31	130	1420033	399	46	246	107	273
CRW_00806	-	0.23	0.26	0.20	115	1913382	503	93	356	54	334
CRW_00807	-	0.39	0.40	0.39	158	1391544	337	46	198	93	240
CRW_00808	-	0.31	0.33	0.29	118	1301289	392	68	216	108	238
CRW_00813	-	0.13	0.15	0.11	20	530775	316	43	127	146	113
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.48	0.48	0.48	225	1117795	263	20	220	23	245
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.62	0.61	0.62	282	1135826	195	25	145	25	182
CRW_01134	-	0.24	0.25	0.24	105	964918	338	37	295	6	322
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.30	149	1606023	407	50	306	51	354
CRW_01168	-	0.38	0.38	0.38	156	900739	276	35	223	18	255
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.25	136	1593470	434	80	319	35	370
CRW_01186	-	0.29	0.30	0.29	114	836184	292	36	237	19	272
CRW_01188	-	0.16	0.17	0.16	65	837463	344	53	284	7	328
CRW_01189	-	0.18	0.19	0.18	73	862243	341	43	282	16	319
CRW_01214	-	0.29	0.29	0.29	117	931897	291	28	253	10	288
CRW_01222	-	0.25	0.25	0.25	99	912875	309	56	246	7	298
CRW_01224	-	0.36	0.35	0.37	140	912901	245	27	208	10	257
CRW_01239	-	0.21	0.21	0.21	80	840073	320	44	259	17	302
CRW_01250	-	0.24	0.24	0.24	90	781502	295	38	245	12	288
CRW_01260	-	0.14	0.14	0.14	55	912875	359	52	294	13	338
CRW_01266	-	0.25	0.26	0.25	99	818161	313	44	256	13	282
CRW_01271	-	0.33	0.34	0.33	129	827149	276	38	225	13	252
CRW_01275	-	0.35	0.35	0.34	153	1082212	314	52	239	23	279
CRW_01283	-	0.32	0.31	0.32	126	963578	281	35	227	19	283
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.33	176	1693179	406	78	287	41	339
CRW_01314	-	0.24	0.23	0.24	95	937373	303	38	259	6	312
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.37	0.38	160	977476	278	42	223	13	274
CRW_01344	-	0.32	0.32	0.32	116	791548	261	44	203	14	250
CRW_01456	-	0.34	0.34	0.33	290	4240454	602	75	509	18	561
PDB_00187	-	0.39	0.41	0.38	291	3746181	565	91	390	84	425
PDB_00401	-	0.47	0.44	0.51	423	3996546	442	46	363	33	530
PDB_00409	-	0.25	0.29	0.21	71	688215	334	71	194	69	174
PDB_00609	-	0.47	0.47	0.47	375	4156495	502	66	350	86	415
PDB_00644	-	0.36	0.37	0.35	300	4328299	606	114	440	52	520
PDB_00675	-	0.46	0.43	0.50	422	4167979	459	45	382	32	552
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.51	228	1073395	247	19	203	25	267
PDB_00704	-	0.49	0.46	0.52	443	4249214	445	55	358	32	530
PDB_00805	-	0.65	0.64	0.67	192	467742	117	17	77	23	110
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.52	0.51	0.53	274	1500261	287	30	213	44	261
PDB_00947	-	0.52	0.53	0.51	396	4310738	529	59	323	147	353
PDB_00993	-	0.45	0.45	0.45	359	3923411	496	60	371	65	443
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.37	0.36	0.38	196	1470957	345	47	270	28	351
PDB_01089	-	0.35	0.36	0.34	276	4053315	614	112	425	77	483
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.55	295	1605991	270	35	207	28	267
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.48	0.47	0.49	254	1433456	289	27	234	28	286
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.45	0.43	0.47	228	1204646	269	31	223	15	299
PDB_01140	-	0.49	0.47	0.50	438	4176622	489	50	385	54	492
PDB_01261	-	0.50	0.45	0.55	152	467750	130	4	122	4	184
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.49	0.47	0.50	232	1117800	256	26	202	28	259

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Fold - scored higher in this pairwise comparison

1. Total counts & total scores for Fold

2. Individual counts for Fold [ download as .csv ]

Performance of RNAfold - scored lower in this pairwise comparison

1. Total counts & total scores for RNAfold

2. Individual counts for RNAfold [ download as .csv ]