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Table of contents:

  1. Overview

  2. Performance Plots

  3. Performance of Murlet(seed) - scored higher in this pairwise comparison

  4. Performance of Contrafold - scored lower in this pairwise comparison

  5. Compile and download dataset for Murlet(seed) & Contrafold [.zip] - may take several seconds...


Overview

Metric Murlet(seed) Contrafold
MCC 0.642 > 0.458
Average MCC ± 95% Confidence Intervals 0.642 ± > 0.458 ±
Sensitivity 0.606 > 0.435
Positive Predictive Value 0.681 > 0.482
Total TP 263 > 189
Total TN 977515 > 977509
Total FP 145 < 217
Total FP CONTRA 6 < 30
Total FP INCONS 117 < 173
Total FP COMP 22 > 14
Total FN 171 < 245
P-value 0.0

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Performance plots


  1. Comparison of performance of Murlet(seed) and Contrafold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Murlet(seed) and Contrafold).

  2. Comparison of average Matthews Correlation Coefficients (MCCs) for Murlet(seed) and Contrafold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Murlet(seed) and Contrafold).

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Performance of Murlet(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for Murlet(seed)

Total Base Pair Counts
Total TP 263
Total TN 977515
Total FP 145
Total FP CONTRA 6
Total FP INCONS 117
Total FP COMP 22
Total FN 171
Total Scores
MCC 0.642
Average MCC ± 95% Confidence Intervals 0.642 ±
Sensitivity 0.606
Positive Predictive Value 0.681
Nr of predictions 1

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2. Individual counts for Murlet(seed) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
CRW_01343

SSU_rRNA_archaea links to Rfam database...

0.64 0.61 0.68 263 977515 145 6 117 22 171

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Performance of Contrafold - scored lower in this pairwise comparison

1. Total counts & total scores for Contrafold

Total Base Pair Counts
Total TP 189
Total TN 977509
Total FP 217
Total FP CONTRA 30
Total FP INCONS 173
Total FP COMP 14
Total FN 245
Total Scores
MCC 0.458
Average MCC ± 95% Confidence Intervals 0.458 ±
Sensitivity 0.435
Positive Predictive Value 0.482
Nr of predictions 1

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2. Individual counts for Contrafold [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
CRW_01343

SSU_rRNA_archaea links to Rfam database...

0.46 0.44 0.48 189 977509 217 30 173 14 245

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

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