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Table of contents:

  1. Overview

  2. Performance Plots

  3. Performance of Murlet(seed) - scored higher in this pairwise comparison

  4. Performance of Sfold - scored lower in this pairwise comparison

  5. Compile and download dataset for Murlet(seed) & Sfold [.zip] - may take several seconds...


Overview

Metric Murlet(seed) Sfold
MCC 0.642 > 0.372
Average MCC ± 95% Confidence Intervals 0.642 ± > 0.372 ±
Sensitivity 0.606 > 0.339
Positive Predictive Value 0.681 > 0.408
Total TP 263 > 147
Total TN 977515 < 977541
Total FP 145 < 224
Total FP CONTRA 6 < 31
Total FP INCONS 117 < 182
Total FP COMP 22 > 11
Total FN 171 < 287
P-value 0.0

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Performance plots


  1. Comparison of performance of Murlet(seed) and Sfold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Murlet(seed) and Sfold).

  2. Comparison of average Matthews Correlation Coefficients (MCCs) for Murlet(seed) and Sfold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Murlet(seed) and Sfold).

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Performance of Murlet(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for Murlet(seed)

Total Base Pair Counts
Total TP 263
Total TN 977515
Total FP 145
Total FP CONTRA 6
Total FP INCONS 117
Total FP COMP 22
Total FN 171
Total Scores
MCC 0.642
Average MCC ± 95% Confidence Intervals 0.642 ±
Sensitivity 0.606
Positive Predictive Value 0.681
Nr of predictions 1

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2. Individual counts for Murlet(seed) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
CRW_01343

SSU_rRNA_archaea links to Rfam database...

0.64 0.61 0.68 263 977515 145 6 117 22 171

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Performance of Sfold - scored lower in this pairwise comparison

1. Total counts & total scores for Sfold

Total Base Pair Counts
Total TP 147
Total TN 977541
Total FP 224
Total FP CONTRA 31
Total FP INCONS 182
Total FP COMP 11
Total FN 287
Total Scores
MCC 0.372
Average MCC ± 95% Confidence Intervals 0.372 ±
Sensitivity 0.339
Positive Predictive Value 0.408
Nr of predictions 1

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2. Individual counts for Sfold [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
CRW_01343

SSU_rRNA_archaea links to Rfam database...

0.37 0.34 0.41 147 977541 224 31 182 11 287

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

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