CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

Home

Methods

Datasets

Rankings

RNA 2D Atlas

Help

FAQ

Contact us

RSS feeds

Twitter

Overview

Metric	Sfold		UNAFold
MCC	0.414	>	0.379
Average MCC ± 95% Confidence Intervals	0.413 ± 0.017	>	0.376 ± 0.017
Sensitivity	0.364	<	0.377
Positive Predictive Value	0.472	>	0.381
Total TP	39910	<	41317
Total TN	389666549	>	389642714
Total FP	57023	<	81496
Total FP CONTRA	7116	<	11033
Total FP INCONS	37590	<	56101
Total FP COMP	12317	<	14362
Total FN	69685	>	68278
P-value	3.56938820447e-08

^top

Performance plots

Comparison of performance of Sfold and UNAFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Sfold and UNAFold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Sfold and UNAFold).
Comparison of average Matthews Correlation Coefficients (MCCs) for Sfold and UNAFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Sfold and UNAFold).

^top

Performance of Sfold - scored higher in this pairwise comparison

1. Total counts & total scores for Sfold

Total Base Pair Counts
Total TP	39910
Total TN	389666549
Total FP	57023
Total FP CONTRA	7116
Total FP INCONS	37590
Total FP COMP	12317
Total FN	69685

Total Scores
MCC	0.414
Average MCC ± 95% Confidence Intervals	0.413 ± 0.017
Sensitivity	0.364
Positive Predictive Value	0.472
Nr of predictions	247

^top

2. Individual counts for Sfold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.51	0.43	0.61	89	3173793	507	7	51	449	120
CRW_00002	-	0.55	0.46	0.67	122	408877	74	22	39	13	142
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.80	0.77	0.83	352	1085176	112	13	60	39	106
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.65	0.64	0.66	304	1141856	180	27	129	24	170
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.50	0.45	0.54	213	1170824	198	17	161	20	257
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.48	0.43	0.54	195	1107453	185	23	145	17	261
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.54	0.49	0.60	232	1172361	169	19	134	16	241
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.49	0.45	0.54	215	1181555	193	31	152	10	261
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.48	0.43	0.53	196	1108938	184	19	152	13	261
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.59	0.55	0.63	258	1178469	180	16	137	27	207
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.66	0.60	0.73	280	1135893	125	10	95	20	183
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.63	0.57	0.70	272	1201636	139	16	101	22	204
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.40	0.37	0.44	171	1152531	233	30	189	14	295
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.67	0.61	0.74	287	1180029	118	21	79	18	184
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.54	0.47	0.61	221	1190832	160	15	128	17	247
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.36	0.32	0.39	144	1082291	233	16	205	12	301
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.45	0.41	0.50	195	1178491	206	27	167	12	278
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.47	0.44	0.50	210	1207811	232	23	191	18	265
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.61	0.53	0.70	254	1198565	129	7	100	22	224
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.54	0.45	0.66	202	1106023	115	16	87	12	251
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.58	0.57	0.59	274	1218677	223	21	169	33	210
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.50	0.46	0.54	221	1198516	206	28	161	17	257
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.37	0.33	0.42	155	1192370	232	35	180	17	313
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.48	0.39	0.59	178	1111985	137	19	104	14	277
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.49	0.43	0.57	198	1122402	170	32	119	19	264
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.55	0.50	0.61	224	1085232	162	22	123	17	222
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.58	0.47	0.73	213	1114978	98	14	66	18	244
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.40	0.30	0.54	136	1110544	127	18	97	12	317
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.51	0.37	0.70	166	1130018	88	6	66	16	284
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.61	0.54	0.69	252	1180052	131	20	92	19	212
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.60	0.55	0.66	250	1117881	149	21	108	20	203
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.68	0.60	0.77	279	1144977	109	11	74	24	185
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.31	0.24	0.40	102	1015772	167	19	132	16	330
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.42	0.33	0.53	149	1131480	147	20	111	16	307
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.77	0.71	0.83	326	1117866	94	16	52	26	132
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.59	0.51	0.68	241	1189298	141	19	95	27	235
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.36	0.31	0.41	142	1123904	219	35	169	15	319
CRW_00294	-	0.39	0.34	0.44	199	2620451	339	70	185	84	387
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.19	0.17	0.21	84	1620496	355	58	262	35	410
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.33	0.30	0.36	156	1762064	326	45	238	43	363
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.21	0.19	0.24	88	1445476	332	57	229	46	374
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.30	0.26	0.35	138	1805554	298	56	202	40	383
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.46	0.37	0.56	187	1627778	175	32	113	30	315
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.34	0.28	0.41	145	1988661	279	50	159	70	372
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.22	0.21	0.24	102	1769589	370	75	255	40	375
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.31	153	1891989	400	68	275	57	361
CRW_00338	-	0.15	0.15	0.15	59	1053036	333	61	270	2	336
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.40	0.35	0.45	173	1586487	244	36	175	33	325
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.34	0.32	0.36	161	1584648	319	58	223	38	340
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.32	0.26	0.40	129	1615184	223	34	156	33	374
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.38	0.33	0.43	166	1674980	241	44	175	22	341
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.36	0.35	0.36	169	1579286	334	74	224	36	313
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.34	0.32	0.36	160	1640327	325	54	225	46	346
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.38	0.34	0.42	171	1611504	271	50	185	36	325
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.39	0.35	0.45	172	1625925	245	34	175	36	326
CRW_00374	-	0.33	0.29	0.37	162	2182564	335	51	228	56	388
CRW_00375	-	0.35	0.28	0.43	153	2299081	263	31	175	57	388
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.44	0.34	0.58	183	2126636	205	17	117	71	351
CRW_00381	-	0.33	0.30	0.37	169	2303271	369	60	231	78	388
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.29	0.27	0.31	138	1750806	345	60	252	33	377
CRW_00400	-	0.22	0.22	0.23	108	2677987	500	67	293	140	386
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.30	0.32	137	1606104	362	58	229	75	327
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.39	0.32	0.47	157	1615171	217	28	147	42	339
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.33	0.29	0.38	146	1665840	278	40	199	39	349
CRW_00417	-	0.38	0.32	0.45	85	458216	111	14	88	9	177
CRW_00418	-	0.28	0.22	0.36	58	441170	106	13	89	4	202
CRW_00419	-	0.17	0.12	0.24	32	464034	104	10	90	4	233
CRW_00421	-	0.56	0.37	0.83	99	463084	32	1	19	12	167
CRW_00422	-	0.41	0.38	0.45	101	455309	146	20	105	21	162
CRW_00424	-	0.39	0.38	0.41	137	789065	212	14	180	18	226
CRW_00426	-	0.51	0.42	0.61	111	457264	77	8	63	6	154
CRW_00427	-	0.26	0.21	0.33	54	454417	116	25	85	6	207
CRW_00428	-	0.40	0.35	0.47	90	465903	112	17	85	10	170
CRW_00430	-	0.35	0.24	0.52	63	456369	64	11	47	6	203
CRW_00433	-	0.40	0.27	0.59	70	467910	52	3	45	4	193
CRW_00434	-	0.25	0.22	0.28	58	457241	157	8	139	10	205
CRW_00435	-	0.38	0.33	0.43	88	451518	122	15	104	3	177
CRW_00437	-	0.26	0.21	0.33	55	456321	116	14	100	2	205
CRW_00438	-	0.35	0.33	0.38	88	454349	154	19	125	10	180
CRW_00441	-	0.22	0.17	0.28	44	454424	117	13	100	4	218
CRW_00442	-	0.40	0.35	0.46	91	453428	118	21	88	9	170
CRW_00443	-	0.38	0.31	0.48	80	456322	102	10	78	14	180
CRW_00444	-	0.24	0.20	0.30	53	459183	130	15	110	5	210
CRW_00445	-	0.32	0.26	0.38	70	458220	118	17	96	5	195
CRW_00446	-	0.44	0.35	0.55	94	468826	82	6	70	6	171
CRW_00447	-	0.35	0.28	0.43	72	452509	108	10	85	13	188
CRW_00448	-	0.34	0.30	0.40	78	457250	129	22	96	11	183
CRW_00449	-	0.33	0.27	0.41	69	444929	98	12	86	0	191
CRW_00450	-	0.34	0.28	0.42	74	458226	117	12	91	14	188
CRW_00451	-	0.21	0.19	0.23	50	457228	180	22	146	12	214
CRW_00452	-	0.31	0.26	0.39	67	453454	122	14	93	15	195
CRW_00453	-	0.27	0.22	0.34	58	452503	121	20	95	6	203
CRW_00454	-	0.21	0.17	0.27	72	1730464	286	23	171	92	363
CRW_00456	-	0.45	0.37	0.54	98	470753	93	13	71	9	167
CRW_00457	-	0.53	0.41	0.69	108	467872	63	6	42	15	156
CRW_00458	-	0.48	0.41	0.56	108	464937	94	13	72	9	156
CRW_00459	-	0.47	0.37	0.58	98	462073	86	11	59	16	165
CRW_00460	-	0.37	0.26	0.54	142	1972826	178	16	107	55	402
CRW_00462	-	0.33	0.28	0.40	72	458225	122	11	95	16	189
CRW_00463	-	0.41	0.31	0.54	78	445896	77	11	55	11	176
CRW_00464	-	0.45	0.37	0.54	98	462061	92	9	73	10	166
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.57	0.54	0.61	247	1116358	185	18	142	25	211
CRW_00468	-	0.52	0.46	0.58	396	4290307	314	46	236	32	459
CRW_00471	-	0.45	0.41	0.49	356	4211532	392	54	311	27	515
CRW_00474	-	0.55	0.50	0.61	417	3976922	301	48	223	30	419
CRW_00476	-	0.38	0.35	0.42	310	4278531	458	72	362	24	569
CRW_00478	-	0.55	0.53	0.57	454	4150721	369	70	276	23	409
CRW_00487	-	0.57	0.50	0.66	435	4223208	260	47	181	32	437
CRW_00488	-	0.46	0.35	0.61	310	4325706	210	36	159	15	576
CRW_00490	-	0.43	0.39	0.48	336	4145066	386	58	300	28	526
CRW_00495	-	0.50	0.44	0.58	379	4205792	316	34	245	37	479
CRW_00496	-	0.40	0.38	0.43	328	4194097	459	48	383	28	538
CRW_00499	-	0.44	0.40	0.49	349	4372685	398	42	327	29	534
CRW_00500	-	0.41	0.37	0.46	317	4205762	393	52	319	22	551
CRW_00501	-	0.47	0.42	0.52	362	4284436	360	33	297	30	506
CRW_00502	-	0.60	0.52	0.68	457	4296178	240	33	178	29	415
CRW_00503	-	0.38	0.34	0.41	296	4252268	441	60	362	19	571
CRW_00507	-	0.42	0.37	0.48	322	4173936	366	50	297	19	543
CRW_00509	-	0.50	0.46	0.53	403	4182524	382	51	300	31	464
CRW_00511	-	0.39	0.36	0.42	310	4107675	449	42	384	23	546
CRW_00512	-	0.53	0.48	0.58	395	3815022	311	51	235	25	424
CRW_00516	-	0.52	0.47	0.59	409	4272730	311	46	241	24	467
CRW_00518	-	0.26	0.23	0.29	204	4357915	520	53	456	11	680
CRW_00520	-	0.53	0.47	0.60	400	4208689	289	40	222	27	450
CRW_00521	-	0.40	0.30	0.52	257	4136633	252	27	209	16	587
CRW_00522	-	0.25	0.22	0.27	173	3643018	475	83	376	16	609
CRW_00525	-	0.27	0.28	0.27	231	4058954	667	83	557	27	582
CRW_00530	-	0.28	0.26	0.29	71	534854	184	48	122	14	197
CRW_00535	-	0.33	0.30	0.36	100	898191	192	43	136	13	228
CRW_00538	-	0.28	0.24	0.32	73	811950	166	43	109	14	227
CRW_00542	-	0.19	0.20	0.18	62	994418	306	84	191	31	255
CRW_00547	-	0.42	0.36	0.48	313	4278627	353	51	284	18	550
CRW_00579	-	0.46	0.41	0.52	382	4290253	367	36	314	17	555
CRW_00583	-	0.46	0.41	0.53	382	4290262	358	36	305	17	555
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.31	0.26	0.36	116	1094139	220	19	186	15	329
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.58	0.40	0.84	179	1119542	50	5	30	15	273
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.60	0.56	0.65	248	1098523	153	22	110	21	198
CRW_00594	-	0.24	0.24	0.23	96	1028486	336	39	274	23	299
CRW_00596	-	0.27	0.23	0.32	90	1024312	210	32	162	16	296
CRW_00597	-	0.27	0.26	0.28	106	1200097	311	38	234	39	305
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.35	0.34	0.37	165	1665773	333	62	225	46	326
CRW_00599	-	0.39	0.36	0.42	196	3754699	630	37	238	355	350
CRW_00604	-	0.55	0.57	0.53	46	411692	193	15	25	153	35
CRW_00606	-	0.76	0.65	0.88	60	559085	217	0	8	209	32
CRW_00607	-	0.62	0.52	0.74	40	536076	246	6	8	232	37
CRW_00615	-	0.52	0.55	0.48	45	553785	257	18	30	209	37
CRW_00616	-	0.84	0.76	0.93	84	1699156	432	2	4	426	26
CRW_00617	-	0.53	0.45	0.63	29	426380	204	1	16	187	35
CRW_00678	-	0.74	0.59	0.93	71	666359	115	0	5	110	50
CRW_00680	-	0.64	0.63	0.65	77	516518	179	7	34	138	45
CRW_00683	-	0.56	0.47	0.66	63	460225	158	7	25	126	72
CRW_00684	-	0.43	0.44	0.42	60	612029	233	30	52	151	75
CRW_00702	-	0.62	0.60	0.63	45	357364	124	6	20	98	30
CRW_00704	-	0.87	0.86	0.88	81	386668	181	4	7	170	13
CRW_00705	-	0.27	0.28	0.27	24	1461105	304	21	45	238	62
CRW_00706	-	0.61	0.54	0.68	32	695563	227	1	14	212	27
CRW_00708	-	0.51	0.56	0.46	37	3457054	510	21	23	466	29
CRW_00709	-	0.10	0.08	0.11	7	1728807	455	4	52	399	78
CRW_00710	-	0.66	0.57	0.76	65	1040318	293	3	17	273	49
CRW_00711	-	0.28	0.30	0.27	37	2318643	537	35	66	436	87
CRW_00712	-	0.63	0.54	0.73	58	952811	272	3	18	251	50
CRW_00713	-	0.60	0.57	0.63	58	731353	257	7	27	223	43
CRW_00723	-	0.48	0.50	0.46	37	1583229	394	22	22	350	37
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.34	0.30	0.38	147	1640380	287	42	197	48	336
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.23	0.22	0.25	105	1636722	354	42	276	36	376
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.33	0.27	0.39	133	1638613	257	32	177	48	353
CRW_00761	-	0.18	0.16	0.20	74	2864046	527	60	241	226	400
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.33	0.28	0.40	124	1215709	234	16	171	47	322
CRW_00765	-	0.52	0.47	0.59	120	452472	95	9	75	11	137
CRW_00766	-	0.31	0.22	0.44	53	440271	79	13	54	12	187
CRW_00768	-	0.49	0.36	0.69	92	471772	55	2	40	13	167
CRW_00769	-	0.52	0.41	0.65	104	451564	69	12	45	12	148
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.30	0.27	0.34	108	945681	233	27	184	22	296
CRW_00773	-	0.53	0.48	0.59	124	451516	97	20	65	12	135
CRW_00774	-	0.33	0.27	0.39	72	488380	135	11	103	21	191
CRW_00777	-	0.30	0.28	0.33	84	719148	191	28	140	23	220
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.42	0.29	0.62	111	1201847	113	3	64	46	273
CRW_00779	-	0.26	0.22	0.31	94	1031466	213	29	177	7	328
CRW_00780	-	0.34	0.29	0.39	75	475607	124	19	99	6	180
CRW_00781	-	0.22	0.21	0.23	94	1978645	426	39	277	110	356
CRW_00783	-	0.38	0.22	0.68	56	453546	31	3	23	5	203
CRW_00784	-	0.25	0.22	0.28	57	456289	157	29	115	13	205
CRW_00785	-	0.38	0.29	0.51	73	452532	77	12	59	6	180
CRW_00786	-	0.37	0.33	0.42	148	1947000	351	22	181	148	302
CRW_00787	-	0.32	0.28	0.37	85	646722	155	20	126	9	221
CRW_00788	-	0.30	0.22	0.41	78	1758560	234	29	83	122	283
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.40	0.34	0.46	152	1137458	193	30	146	17	295
CRW_00790	-	0.26	0.22	0.31	98	1803729	314	16	207	91	349
CRW_00792	-	0.22	0.19	0.25	73	1581235	337	42	181	114	310
CRW_00793	-	0.58	0.45	0.75	170	1048850	90	13	43	34	207
CRW_00794	-	0.24	0.22	0.25	55	434562	180	12	149	19	191
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.19	0.17	0.20	68	1152586	311	44	223	44	326
CRW_00796	-	0.29	0.23	0.35	55	384845	117	15	88	14	180
CRW_00797	-	0.29	0.27	0.33	91	692975	208	24	163	21	251
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.52	0.46	0.59	215	1401613	204	32	115	57	255
CRW_00801	-	0.47	0.43	0.52	108	438307	114	27	74	13	141
CRW_00802	-	0.30	0.25	0.36	62	460150	118	24	84	10	191
CRW_00803	-	0.26	0.27	0.26	119	1952825	396	66	266	64	330
CRW_00804	-	0.43	0.31	0.60	124	1420250	130	8	73	49	279
CRW_00806	-	0.27	0.26	0.27	118	1913513	361	68	247	46	331
CRW_00807	-	0.33	0.25	0.43	101	1391710	221	22	113	86	297
CRW_00808	-	0.30	0.24	0.37	84	1301464	206	23	120	63	272
CRW_00813	-	0.16	0.18	0.15	24	530800	277	43	98	136	109
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.52	227	1117826	230	18	189	23	243
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.59	0.52	0.66	241	1135913	144	19	105	20	223
CRW_01134	-	0.32	0.26	0.39	112	965071	178	31	141	6	315
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.37	0.30	0.45	152	1606193	221	35	148	38	351
CRW_01168	-	0.35	0.33	0.36	135	900783	250	35	200	15	276
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.33	0.29	0.38	149	1593608	285	55	193	37	357
CRW_01186	-	0.28	0.21	0.38	82	836356	142	22	111	9	304
CRW_01188	-	0.18	0.17	0.19	67	837521	284	41	236	7	326
CRW_01189	-	0.23	0.19	0.27	74	862370	211	27	170	14	318
CRW_01214	-	0.31	0.25	0.40	100	932045	156	17	133	6	305
CRW_01222	-	0.24	0.23	0.26	90	912934	256	47	205	4	307
CRW_01224	-	0.40	0.35	0.46	140	912969	173	16	151	6	257
CRW_01239	-	0.12	0.10	0.15	38	840198	222	36	184	2	344
CRW_01250	-	0.32	0.27	0.39	101	781618	162	24	132	6	277
CRW_01260	-	0.18	0.14	0.23	55	913041	186	25	155	6	338
CRW_01266	-	0.37	0.32	0.43	123	818277	173	25	135	13	258
CRW_01271	-	0.32	0.29	0.34	111	827216	225	31	183	11	270
CRW_01275	-	0.36	0.31	0.42	136	1082334	199	32	154	13	296
CRW_01283	-	0.34	0.30	0.38	124	963636	225	27	179	19	285
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.39	0.34	0.45	175	1693327	254	42	176	36	340
CRW_01314	-	0.31	0.27	0.35	110	937451	218	25	179	14	297
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.34	0.41	147	977541	224	31	182	11	287
CRW_01344	-	0.37	0.29	0.47	105	791689	125	22	95	8	261
CRW_01456	-	0.36	0.29	0.45	244	4240788	310	30	266	14	607
PDB_00187	-	0.36	0.33	0.39	238	3746348	425	68	299	58	478
PDB_00401	-	0.52	0.45	0.60	433	3996655	320	37	253	30	520
PDB_00409	-	0.34	0.38	0.31	94	688247	282	63	147	72	151
PDB_00609	-	0.39	0.37	0.42	291	4156594	453	62	339	52	499
PDB_00644	-	0.44	0.37	0.52	301	4328577	326	53	222	51	519
PDB_00675	-	0.49	0.44	0.56	429	4168056	371	37	306	28	545
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.52	0.46	0.58	229	1073451	189	12	153	24	266
PDB_00704	-	0.54	0.46	0.62	449	4249351	300	34	236	30	524
PDB_00805	-	0.64	0.59	0.70	177	467775	99	11	65	23	125
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.54	0.49	0.60	263	1500337	220	22	156	42	272
PDB_00947	-	0.60	0.50	0.72	374	4310994	268	25	123	120	375
PDB_00993	-	0.45	0.37	0.54	299	3923643	315	42	217	56	503
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.38	0.32	0.47	173	1471098	222	33	166	23	374
PDB_01089	-	0.40	0.38	0.42	286	4053448	470	93	301	76	473
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.56	0.50	0.63	280	1606082	191	20	146	25	282
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.60	0.53	0.67	288	1433540	169	14	129	26	252
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.55	0.44	0.70	230	1204799	110	12	87	11	297
PDB_01140	-	0.49	0.43	0.56	403	4176769	373	33	290	50	527
PDB_01261	-	0.59	0.43	0.79	146	467843	43	2	37	4	190
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.50	0.46	0.54	227	1117836	223	19	178	26	264

^top

Performance of UNAFold - scored lower in this pairwise comparison

1. Total counts & total scores for UNAFold

Total Base Pair Counts
Total TP	41317
Total TN	389642714
Total FP	81496
Total FP CONTRA	11033
Total FP INCONS	56101
Total FP COMP	14362
Total FN	68278

Total Scores
MCC	0.379
Average MCC ± 95% Confidence Intervals	0.376 ± 0.017
Sensitivity	0.377
Positive Predictive Value	0.381
Nr of predictions	247

^top

2. Individual counts for UNAFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.45	0.44	0.46	93	3173737	661	15	95	551	116
CRW_00002	-	0.55	0.54	0.56	143	408803	127	31	83	13	121
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.77	0.76	0.78	347	1085158	132	19	77	36	111
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.64	0.64	0.64	303	1141840	196	31	142	23	171
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.52	0.51	0.53	241	1170762	229	24	188	17	229
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.44	195	1107376	258	28	217	13	261
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	227	1172295	238	32	192	14	246
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.52	241	1181493	233	41	178	14	235
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.47	209	1108862	250	23	211	16	248
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.55	250	1178428	227	29	173	25	215
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.66	0.65	0.67	303	1135826	172	19	130	23	160
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.58	0.58	0.59	275	1201557	219	25	168	26	201
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.41	0.41	0.42	190	1152471	280	32	228	20	276
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.65	0.63	0.66	299	1179965	174	29	123	22	172
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	207	1190736	269	34	219	16	261
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.28	0.28	0.29	126	1082215	327	39	276	12	319
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.51	0.49	0.53	234	1178440	221	29	177	15	239
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	211	1207765	281	32	227	22	264
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.57	256	1198474	218	27	169	22	222
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	163	1105885	293	45	235	13	290
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.58	0.57	0.58	276	1218667	230	24	174	32	208
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.39	0.39	0.39	186	1198451	301	43	246	12	292
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.52	228	1192304	228	35	173	20	240
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.47	0.45	0.48	207	1111853	250	29	197	24	248
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.48	0.47	0.50	217	1122314	236	33	187	16	245
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	222	1085175	222	28	176	18	224
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.68	0.68	0.69	310	1114822	160	19	120	21	147
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.35	154	1110361	293	42	238	13	299
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.44	186	1129832	259	29	209	21	264
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.45	197	1179977	258	31	211	16	267
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.68	0.67	0.68	302	1117819	159	19	120	20	151
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.65	0.63	0.67	291	1144909	165	18	123	24	173
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.25	0.24	0.25	103	1015621	323	37	264	22	329
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.29	0.28	0.29	129	1131319	325	39	273	13	327
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.75	0.74	0.76	338	1117818	130	22	82	26	120
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	203	1189200	274	30	220	24	273
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.43	184	1123823	255	41	202	12	277
CRW_00294	-	0.31	0.33	0.29	191	2620252	546	107	355	84	395
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.22	0.23	0.22	114	1620379	443	82	325	36	380
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	163	1761959	431	87	294	50	356
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.16	0.16	0.16	76	1445368	444	67	339	38	386
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.26	141	1805406	466	81	322	63	380
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.35	176	1627600	377	65	269	43	326
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.29	0.31	0.28	158	1988457	459	73	327	59	359
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.21	0.22	0.20	104	1769488	470	103	326	41	373
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.32	169	1891961	426	77	278	71	345
CRW_00338	-	0.15	0.16	0.14	64	1052953	413	75	334	4	331
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.27	138	1586355	422	75	303	44	360
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.29	155	1584555	401	76	304	21	346
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.26	0.26	0.26	131	1615002	412	57	313	42	372
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.39	200	1674848	370	67	250	53	307
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.33	0.35	0.32	167	1579237	391	83	266	42	315
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.25	0.26	0.25	130	1640246	437	74	316	47	376
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.30	159	1611384	399	75	292	32	337
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.36	0.36	0.36	180	1625800	366	59	267	40	318
CRW_00374	-	0.44	0.44	0.44	244	2182449	395	57	255	83	306
CRW_00375	-	0.28	0.29	0.27	158	2298864	499	77	341	81	383
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	215	2126404	429	56	278	95	319
CRW_00381	-	0.30	0.31	0.30	174	2303144	499	73	340	86	383
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.25	0.27	0.24	137	1750675	476	78	366	32	378
CRW_00400	-	0.19	0.20	0.18	98	2677906	616	88	363	165	396
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	146	1606048	418	64	270	84	318
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.27	138	1614990	413	60	315	38	358
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.29	154	1665688	426	77	306	43	341
CRW_00417	-	0.39	0.38	0.40	99	458154	161	21	129	11	163
CRW_00418	-	0.22	0.20	0.24	52	441115	174	21	142	11	208
CRW_00419	-	0.20	0.18	0.21	49	463930	194	17	170	7	216
CRW_00421	-	0.31	0.30	0.33	79	462964	173	28	132	13	187
CRW_00422	-	0.37	0.36	0.38	95	455287	170	24	129	17	168
CRW_00424	-	0.38	0.39	0.38	140	789031	251	22	203	26	223
CRW_00426	-	0.34	0.33	0.35	88	457193	175	23	142	10	177
CRW_00427	-	0.21	0.21	0.22	54	454337	205	33	157	15	207
CRW_00428	-	0.38	0.38	0.38	98	465840	170	32	125	13	162
CRW_00430	-	0.45	0.42	0.49	112	456262	128	20	96	12	154
CRW_00433	-	0.29	0.26	0.32	68	467817	148	21	122	5	195
CRW_00434	-	0.31	0.29	0.33	75	457220	157	19	132	6	188
CRW_00435	-	0.45	0.42	0.49	110	451500	126	9	106	11	155
CRW_00437	-	0.21	0.21	0.22	54	456247	191	23	166	2	206
CRW_00438	-	0.34	0.32	0.37	87	454343	161	16	135	10	181
CRW_00441	-	0.17	0.16	0.18	42	454353	190	32	154	4	220
CRW_00442	-	0.38	0.36	0.40	94	453393	149	25	116	8	167
CRW_00443	-	0.38	0.36	0.41	93	456264	154	19	114	21	167
CRW_00444	-	0.30	0.29	0.32	76	459122	172	24	139	9	187
CRW_00445	-	0.30	0.28	0.33	75	458173	164	23	132	9	190
CRW_00446	-	0.36	0.33	0.38	88	468765	157	17	126	14	177
CRW_00447	-	0.33	0.32	0.35	82	452443	167	16	135	16	178
CRW_00448	-	0.34	0.33	0.36	85	457211	168	28	122	18	176
CRW_00449	-	0.15	0.15	0.16	38	444860	198	34	164	0	222
CRW_00450	-	0.34	0.32	0.36	83	458172	162	19	129	14	179
CRW_00451	-	0.24	0.22	0.26	59	457222	181	21	144	16	205
CRW_00452	-	0.29	0.26	0.31	69	453407	169	26	126	17	193
CRW_00453	-	0.23	0.21	0.24	56	452447	180	35	138	7	205
CRW_00454	-	0.16	0.16	0.17	69	1730315	473	57	289	127	366
CRW_00456	-	0.44	0.41	0.47	108	470706	137	19	102	16	157
CRW_00457	-	0.38	0.36	0.40	95	467788	159	28	117	14	169
CRW_00458	-	0.46	0.44	0.48	115	464891	141	21	103	17	149
CRW_00459	-	0.55	0.51	0.58	135	462008	117	16	82	19	128
CRW_00460	-	0.30	0.30	0.30	161	1972561	446	49	320	77	383
CRW_00462	-	0.18	0.16	0.19	43	458180	198	21	159	18	218
CRW_00463	-	0.39	0.38	0.40	97	445799	154	21	123	10	157
CRW_00464	-	0.38	0.35	0.42	92	462021	139	14	114	11	172
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	265	1116332	195	23	145	27	193
CRW_00468	-	0.48	0.48	0.47	408	4290123	488	76	378	34	447
CRW_00471	-	0.52	0.51	0.53	445	4211420	422	70	318	34	426
CRW_00474	-	0.45	0.44	0.45	371	3976793	477	67	379	31	465
CRW_00476	-	0.37	0.37	0.37	323	4278391	590	78	483	29	556
CRW_00478	-	0.52	0.52	0.53	445	4150683	417	70	323	24	418
CRW_00487	-	0.48	0.47	0.49	409	4223041	450	72	349	29	463
CRW_00488	-	0.36	0.36	0.37	318	4325352	560	78	463	19	568
CRW_00490	-	0.40	0.39	0.40	339	4144915	541	70	436	35	523
CRW_00495	-	0.38	0.37	0.38	319	4205611	549	60	460	29	539
CRW_00496	-	0.42	0.41	0.43	354	4194028	503	59	415	29	512
CRW_00499	-	0.40	0.39	0.40	343	4372553	528	65	442	21	540
CRW_00500	-	0.45	0.44	0.45	385	4205593	497	68	404	25	483
CRW_00501	-	0.46	0.46	0.47	399	4284272	487	77	380	30	469
CRW_00502	-	0.52	0.52	0.53	456	4295979	445	73	338	34	416
CRW_00503	-	0.41	0.41	0.42	354	4252133	529	73	426	30	513
CRW_00507	-	0.32	0.32	0.32	278	4173747	595	64	516	15	587
CRW_00509	-	0.46	0.45	0.48	392	4182454	467	68	364	35	475
CRW_00511	-	0.37	0.36	0.37	309	4107578	542	55	469	18	547
CRW_00512	-	0.50	0.50	0.51	409	3814897	424	61	336	27	410
CRW_00516	-	0.51	0.51	0.52	448	4272559	453	67	352	34	428
CRW_00518	-	0.25	0.25	0.26	220	4357775	642	74	559	9	664
CRW_00520	-	0.42	0.42	0.42	354	4208514	507	81	402	24	496
CRW_00521	-	0.32	0.31	0.32	265	4136305	581	77	479	25	579
CRW_00522	-	0.20	0.21	0.20	164	3642825	687	115	546	26	618
CRW_00525	-	0.30	0.31	0.28	254	4058917	690	83	571	36	559
CRW_00530	-	0.26	0.28	0.25	74	534802	233	55	164	14	194
CRW_00535	-	0.26	0.28	0.25	91	898105	293	66	208	19	237
CRW_00538	-	0.19	0.20	0.18	59	811850	285	65	201	19	241
CRW_00542	-	0.20	0.23	0.18	72	994346	357	100	237	20	245
CRW_00547	-	0.46	0.46	0.47	397	4278426	479	61	391	27	466
CRW_00579	-	0.45	0.44	0.47	413	4290101	485	60	411	14	524
CRW_00583	-	0.45	0.44	0.47	413	4290101	485	60	411	14	524
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.28	0.27	0.29	121	1094037	315	38	264	13	324
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.37	153	1119337	287	30	236	21	299
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	243	1098483	208	22	155	31	203
CRW_00594	-	0.23	0.24	0.22	94	1028460	369	47	294	28	301
CRW_00596	-	0.21	0.22	0.20	85	1024169	356	69	273	14	301
CRW_00597	-	0.24	0.25	0.23	101	1200045	369	48	281	40	310
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	183	1665703	391	62	277	52	308
CRW_00599	-	0.35	0.36	0.34	195	3754588	700	77	310	313	351
CRW_00604	-	0.82	0.86	0.79	70	411689	188	10	9	169	11
CRW_00606	-	0.87	0.84	0.91	77	559068	251	0	8	243	15
CRW_00607	-	0.54	0.53	0.55	41	536056	268	10	23	235	36
CRW_00615	-	0.50	0.56	0.45	46	553776	279	21	35	223	36
CRW_00616	-	0.61	0.59	0.63	65	1699143	504	2	36	466	45
CRW_00617	-	0.41	0.45	0.38	29	426349	237	15	33	189	35
CRW_00678	-	0.41	0.45	0.37	55	666287	299	23	70	206	66
CRW_00680	-	0.32	0.36	0.28	44	516477	258	32	83	143	78
CRW_00683	-	0.50	0.50	0.49	68	460182	221	18	52	151	67
CRW_00684	-	0.35	0.37	0.32	50	612016	279	36	69	174	85
CRW_00702	-	0.57	0.64	0.51	48	357341	200	16	30	154	27
CRW_00704	-	0.80	0.79	0.82	74	386670	190	4	12	174	20
CRW_00705	-	0.29	0.37	0.22	32	1461052	464	50	61	353	54
CRW_00706	-	0.37	0.41	0.34	24	695539	343	11	36	296	35
CRW_00708	-	0.49	0.65	0.37	43	3457019	742	55	18	669	23
CRW_00709	-	0.23	0.22	0.24	19	1728790	569	8	53	508	66
CRW_00710	-	0.66	0.65	0.67	74	1040293	368	8	28	332	40
CRW_00711	-	0.28	0.30	0.26	37	2318636	603	35	73	495	87
CRW_00712	-	0.46	0.53	0.40	57	952749	364	30	54	280	51
CRW_00713	-	0.67	0.65	0.69	66	731349	298	5	25	268	35
CRW_00723	-	0.46	0.57	0.37	42	1583195	497	40	33	424	32
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	138	1640264	418	60	304	54	345
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.23	0.24	0.22	117	1636617	466	66	345	55	364
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.32	151	1638482	393	57	265	71	335
CRW_00761	-	0.20	0.21	0.19	98	2863901	663	82	340	241	376
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.29	0.27	0.30	122	1215612	330	26	260	44	324
CRW_00765	-	0.24	0.24	0.24	62	452416	208	36	162	10	195
CRW_00766	-	0.23	0.22	0.23	53	440165	188	28	145	15	187
CRW_00768	-	0.56	0.54	0.58	141	471663	124	14	88	22	118
CRW_00769	-	0.37	0.35	0.39	88	451499	151	24	114	13	164
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.25	0.25	0.26	101	945612	317	39	248	30	303
CRW_00773	-	0.47	0.47	0.48	121	451471	151	28	105	18	138
CRW_00774	-	0.34	0.32	0.37	85	488335	171	20	126	25	178
CRW_00777	-	0.29	0.29	0.29	88	719096	251	36	180	35	216
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.32	0.32	0.33	123	1201647	309	46	209	54	261
CRW_00779	-	0.29	0.28	0.29	120	1031355	310	39	252	19	302
CRW_00780	-	0.36	0.35	0.37	89	475561	163	24	126	13	166
CRW_00781	-	0.18	0.20	0.17	90	1978527	535	77	361	97	360
CRW_00783	-	0.35	0.34	0.36	87	453385	167	15	141	11	172
CRW_00784	-	0.34	0.33	0.36	86	456249	169	29	126	14	176
CRW_00785	-	0.30	0.29	0.32	73	452445	165	31	127	7	180
CRW_00786	-	0.41	0.42	0.41	187	1946898	430	36	230	164	263
CRW_00787	-	0.23	0.24	0.23	72	646633	257	40	208	9	234
CRW_00788	-	0.35	0.36	0.34	131	1758365	426	62	192	172	230
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.34	0.33	0.34	147	1137356	300	35	248	17	300
CRW_00790	-	0.16	0.17	0.15	74	1803544	496	75	357	64	373
CRW_00792	-	0.24	0.26	0.23	99	1581092	444	81	259	104	284
CRW_00793	-	0.32	0.33	0.31	124	1048682	323	53	217	53	253
CRW_00794	-	0.23	0.23	0.23	56	434530	209	20	172	17	190
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.19	0.20	0.19	78	1152508	377	53	282	42	316
CRW_00796	-	0.25	0.23	0.26	55	384793	177	24	131	22	180
CRW_00797	-	0.29	0.29	0.29	98	692914	265	38	203	24	244
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.51	0.51	0.52	238	1401519	271	33	185	53	232
CRW_00801	-	0.46	0.45	0.46	113	438272	150	28	103	19	136
CRW_00802	-	0.25	0.24	0.25	61	460079	192	36	144	12	192
CRW_00803	-	0.25	0.28	0.23	125	1952727	493	86	338	69	324
CRW_00804	-	0.34	0.34	0.33	137	1420043	397	43	232	122	266
CRW_00806	-	0.25	0.28	0.23	125	1913403	482	86	332	64	324
CRW_00807	-	0.25	0.26	0.25	102	1391535	411	56	253	102	296
CRW_00808	-	0.20	0.21	0.19	74	1301303	411	68	246	97	282
CRW_00813	-	0.17	0.20	0.14	27	530778	295	47	113	135	106
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.48	0.48	0.49	225	1117800	258	25	210	23	245
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	268	1135838	197	24	148	25	196
CRW_01134	-	0.34	0.33	0.34	142	964943	281	42	228	11	285
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.25	0.25	0.25	128	1606016	421	65	319	37	375
CRW_01168	-	0.33	0.33	0.33	136	900740	294	43	234	17	275
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.24	0.24	0.24	123	1593484	433	84	314	35	383
CRW_01186	-	0.23	0.23	0.23	89	836190	303	44	248	11	297
CRW_01188	-	0.11	0.11	0.11	42	837482	347	50	291	6	351
CRW_01189	-	0.19	0.19	0.19	74	862254	323	55	258	10	318
CRW_01214	-	0.35	0.33	0.36	135	931923	248	39	198	11	270
CRW_01222	-	0.24	0.24	0.25	96	912886	298	54	240	4	301
CRW_01224	-	0.32	0.30	0.33	121	912914	248	29	212	7	276
CRW_01239	-	0.19	0.19	0.19	71	840087	311	46	252	13	311
CRW_01250	-	0.24	0.23	0.24	87	781517	284	38	233	13	291
CRW_01260	-	0.14	0.13	0.14	52	912906	325	45	273	7	341
CRW_01266	-	0.24	0.24	0.24	91	818175	306	39	255	12	290
CRW_01271	-	0.30	0.30	0.29	113	827157	283	32	239	12	268
CRW_01275	-	0.32	0.32	0.32	139	1082223	310	46	248	16	293
CRW_01283	-	0.37	0.36	0.38	149	963574	261	40	203	18	260
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.37	0.37	0.36	193	1693178	383	91	258	34	322
CRW_01314	-	0.23	0.22	0.24	91	937383	301	38	253	10	316
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.35	0.35	0.35	151	977475	287	44	231	12	283
CRW_01344	-	0.34	0.33	0.34	122	791557	238	42	190	6	244
CRW_01456	-	0.29	0.30	0.29	253	4240458	631	87	530	14	598
PDB_00187	-	0.39	0.39	0.38	282	3746210	558	88	373	97	434
PDB_00401	-	0.47	0.43	0.50	413	3996557	440	40	368	32	540
PDB_00409	-	0.32	0.37	0.27	90	688221	309	74	166	69	155
PDB_00609	-	0.38	0.39	0.38	309	4156470	571	100	407	64	481
PDB_00644	-	0.35	0.35	0.34	286	4328318	597	102	447	48	534
PDB_00675	-	0.42	0.39	0.45	381	4167987	491	39	421	31	593
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.57	258	1073389	221	20	178	23	237
PDB_00704	-	0.52	0.48	0.56	465	4249241	401	49	315	37	508
PDB_00805	-	0.64	0.61	0.68	184	467756	111	11	77	23	118
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.54	285	1500255	284	22	216	46	250
PDB_00947	-	0.45	0.47	0.44	355	4310703	565	83	375	107	394
PDB_00993	-	0.39	0.39	0.39	313	3923400	544	81	407	56	489
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.39	0.37	0.41	202	1470973	322	44	251	27	345
PDB_01089	-	0.41	0.41	0.40	310	4053360	546	89	369	88	449
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	324	1605991	243	32	181	30	238
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.60	0.58	0.61	315	1433457	227	14	185	28	225
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.47	0.44	0.50	232	1204667	242	27	202	13	295
PDB_01140	-	0.51	0.49	0.53	457	4176627	454	58	353	43	473
PDB_01261	-	0.50	0.45	0.55	152	467750	130	4	122	4	184
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.53	235	1117815	238	14	196	28	256

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Sfold - scored higher in this pairwise comparison

1. Total counts & total scores for Sfold

2. Individual counts for Sfold [ download as .csv ]

Performance of UNAFold - scored lower in this pairwise comparison

1. Total counts & total scores for UNAFold

2. Individual counts for UNAFold [ download as .csv ]