CompaRNA - on-line benchmarks of RNA structure prediction methods

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Metric	MXScarna(20)		PETfold_2.0(seed)
MCC	1.000	>	0.905
Average MCC ± 95% Confidence Intervals	1.000 ±	>	0.905 ±
Sensitivity	1.000	>	0.889
Positive Predictive Value	1.000	>	0.923
Total TP	27	>	24
Total TN	2629	<	2630
Total FP	12	<	14
Total FP CONTRA	0	=	0
Total FP INCONS	0	<	2
Total FP COMP	12	=	12
Total FN	0	<	3
P-value	0.0

Comparison of performance of MXScarna(20) and PETfold_2.0(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for MXScarna(20) and PETfold_2.0(seed)).
Comparison of average Matthews Correlation Coefficients (MCCs) for MXScarna(20) and PETfold_2.0(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for MXScarna(20) and PETfold_2.0(seed)).

Total Scores
MCC	1.000
Average MCC ± 95% Confidence Intervals	1.000 ±
Sensitivity	1.000
Positive Predictive Value	1.000
Nr of predictions	1

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
3J3V_B	5S_rRNA links to Rfam database...	1.00	1.00	1.00	27	2629	12	0	0	12	0

Total Scores
MCC	0.905
Average MCC ± 95% Confidence Intervals	0.905 ±
Sensitivity	0.889
Positive Predictive Value	0.923
Nr of predictions	1

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
3J3V_B	5S_rRNA links to Rfam database...	0.90	0.89	0.92	24	2630	14	0	2	12	3

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.