CompaRNA - on-line benchmarks of RNA structure prediction methods

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Metric	PETfold_2.0(seed)		Vsfold4
MCC	0.905	>	0.193
Average MCC ± 95% Confidence Intervals	0.905 ±	>	0.193 ±
Sensitivity	0.889	>	0.185
Positive Predictive Value	0.923	>	0.217
Total TP	24	>	5
Total TN	2630	<	2633
Total FP	14	<	24
Total FP CONTRA	0	<	3
Total FP INCONS	2	<	15
Total FP COMP	12	>	6
Total FN	3	<	22
P-value	0.0

Comparison of performance of PETfold_2.0(seed) and Vsfold4. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PETfold_2.0(seed) and Vsfold4).
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_2.0(seed) and Vsfold4. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PETfold_2.0(seed) and Vsfold4).

Total Scores
MCC	0.905
Average MCC ± 95% Confidence Intervals	0.905 ±
Sensitivity	0.889
Positive Predictive Value	0.923
Nr of predictions	1

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
3J3V_B	5S_rRNA links to Rfam database...	0.90	0.89	0.92	24	2630	14	0	2	12	3

Total Scores
MCC	0.193
Average MCC ± 95% Confidence Intervals	0.193 ±
Sensitivity	0.185
Positive Predictive Value	0.217
Nr of predictions	1

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
3J3V_B	5S_rRNA links to Rfam database...	0.19	0.19	0.22	5	2633	24	3	15	6	22

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.