Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(20)
- scored higher in this pairwise comparison
- Performance of Multilign(seed)
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(20) & Multilign(seed) [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(20) |
|
Multilign(seed) |
|---|
| MCC |
0.553 |
>
|
0.517 |
| Average MCC ± 95% Confidence Intervals |
0.538
±
0.768
|
>
|
0.474
±
0.676
|
| Sensitivity |
0.521 |
>
|
0.479 |
| Positive Predictive Value |
0.594 |
>
|
0.565 |
| Total TP |
38 |
>
|
35 |
| Total TN |
9489 |
<
|
9491 |
| Total FP |
35 |
>
|
29 |
| Total FP CONTRA |
3 |
<
|
12 |
| Total FP INCONS |
23 |
>
|
15 |
| Total FP COMP |
9 |
>
|
2 |
| Total FN |
35 |
<
|
38 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(20) and Multilign(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(20)
and Multilign(seed)).
-
Comparison of performance of PETfold_pre2.0(20) and Multilign(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(20)
and Multilign(seed)).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(20) and Multilign(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(20)
and Multilign(seed)).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(20) and Multilign(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(20)
and Multilign(seed)).
Performance of PETfold_pre2.0(20)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(20)
| Total Base Pair Counts |
|---|
| Total TP |
38 |
| Total TN |
9489 |
| Total FP |
35 |
| Total FP CONTRA |
3 |
| Total FP INCONS |
23 |
| Total FP COMP |
9 |
| Total FN |
35 |
| Total Scores |
|---|
| MCC |
0.553 |
| Average MCC ± 95% Confidence Intervals |
0.538
±
0.768
|
| Sensitivity |
0.521 |
| Positive Predictive Value |
0.594 |
| Nr of predictions |
3 |
Performance of Multilign(seed)
- scored lower in this pairwise comparison
1. Total counts & total scores for Multilign(seed)
| Total Base Pair Counts |
|---|
| Total TP |
35 |
| Total TN |
9491 |
| Total FP |
29 |
| Total FP CONTRA |
12 |
| Total FP INCONS |
15 |
| Total FP COMP |
2 |
| Total FN |
38 |
| Total Scores |
|---|
| MCC |
0.517 |
| Average MCC ± 95% Confidence Intervals |
0.474
±
0.676
|
| Sensitivity |
0.479 |
| Positive Predictive Value |
0.565 |
| Nr of predictions |
3 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
