CompaRNA - on-line benchmarks of RNA structure prediction methods
Home

Methods
Datasets
Rankings
RNA 2D Atlas

Help
FAQ

Contact us
RSS feeds
Twitter

Table of contents:

  1. Overview

  2. Performance Plots

  3. Performance of PETfold_pre2.0(20) - scored higher in this pairwise comparison

  4. Performance of PETfold_2.0(seed) - scored lower in this pairwise comparison

  5. Compile and download dataset for PETfold_pre2.0(20) & PETfold_2.0(seed) [.zip] - may take several seconds...


Overview

Metric PETfold_pre2.0(20) PETfold_2.0(seed)
MCC 0.905 = 0.905
Average MCC ± 95% Confidence Intervals 0.905 ± = 0.905 ±
Sensitivity 0.889 = 0.889
Positive Predictive Value 0.923 = 0.923
Total TP 24 = 24
Total TN 2630 = 2630
Total FP 11 < 14
Total FP CONTRA 0 = 0
Total FP INCONS 2 = 2
Total FP COMP 9 < 12
Total FN 3 = 3
P-value 0.0

^top



Performance plots


  1. Comparison of performance of PETfold_pre2.0(20) and PETfold_2.0(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PETfold_pre2.0(20) and PETfold_2.0(seed)).

  2. Comparison of performance of PETfold_pre2.0(20) and PETfold_2.0(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PETfold_pre2.0(20) and PETfold_2.0(seed)).

  3. Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(20) and PETfold_2.0(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PETfold_pre2.0(20) and PETfold_2.0(seed)).

  4. Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(20) and PETfold_2.0(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PETfold_pre2.0(20) and PETfold_2.0(seed)).

^top




Performance of PETfold_pre2.0(20) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(20)

Total Base Pair Counts
Total TP 24
Total TN 2630
Total FP 11
Total FP CONTRA 0
Total FP INCONS 2
Total FP COMP 9
Total FN 3
Total Scores
MCC 0.905
Average MCC ± 95% Confidence Intervals 0.905 ±
Sensitivity 0.889
Positive Predictive Value 0.923
Nr of predictions 1

^top


2. Individual counts for PETfold_pre2.0(20) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
3J3V_B

5S_rRNA links to Rfam database...

0.90 0.89 0.92 24 2630 11 0 2 9 3

^top


Performance of PETfold_2.0(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for PETfold_2.0(seed)

Total Base Pair Counts
Total TP 24
Total TN 2630
Total FP 14
Total FP CONTRA 0
Total FP INCONS 2
Total FP COMP 12
Total FN 3
Total Scores
MCC 0.905
Average MCC ± 95% Confidence Intervals 0.905 ±
Sensitivity 0.889
Positive Predictive Value 0.923
Nr of predictions 1

^top


2. Individual counts for PETfold_2.0(seed) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
3J3V_B

5S_rRNA links to Rfam database...

0.90 0.89 0.92 24 2630 14 0 2 12 3

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Copyright© - Adam Mickiewicz University & IIMCB - All rights reserved