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Table of contents:

  1. Overview

  2. Performance Plots

  3. Performance of CMfinder(20) - scored higher in this pairwise comparison

  4. Performance of Carnac(seed) - scored lower in this pairwise comparison

  5. Compile and download dataset for CMfinder(20) & Carnac(seed) [.zip] - may take several seconds...


Overview

Metric CMfinder(20) Carnac(seed)
MCC 0.466 > 0.000
Average MCC ± 95% Confidence Intervals 0.466 ± > 0.000 ±
Sensitivity 0.219 > 0.000
Positive Predictive Value 1.000 > 0.000
Total TP 7 > 0
Total TN 3479 < 3486
Total FP 0 = 0
Total FP CONTRA 0 = 0
Total FP INCONS 0 = 0
Total FP COMP 0 = 0
Total FN 25 < 32
P-value 0.0

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Performance plots


  1. Comparison of performance of CMfinder(20) and Carnac(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for CMfinder(20) and Carnac(seed)).

  2. Comparison of performance of CMfinder(20) and Carnac(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for CMfinder(20) and Carnac(seed)).

  3. Comparison of average Matthews Correlation Coefficients (MCCs) for CMfinder(20) and Carnac(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for CMfinder(20) and Carnac(seed)).

  4. Comparison of average Matthews Correlation Coefficients (MCCs) for CMfinder(20) and Carnac(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for CMfinder(20) and Carnac(seed)).

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Performance of CMfinder(20) - scored higher in this pairwise comparison

1. Total counts & total scores for CMfinder(20)

Total Base Pair Counts
Total TP 7
Total TN 3479
Total FP 0
Total FP CONTRA 0
Total FP INCONS 0
Total FP COMP 0
Total FN 25
Total Scores
MCC 0.466
Average MCC ± 95% Confidence Intervals 0.466 ±
Sensitivity 0.219
Positive Predictive Value 1.000
Nr of predictions 1

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2. Individual counts for CMfinder(20) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
4FRG_B

AdoCbl-variant links to Rfam database...

0.47 0.22 1.00 7 3479 0 0 0 0 25

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Performance of Carnac(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for Carnac(seed)

Total Base Pair Counts
Total TP 0
Total TN 3486
Total FP 0
Total FP CONTRA 0
Total FP INCONS 0
Total FP COMP 0
Total FN 32
Total Scores
MCC 0.000
Average MCC ± 95% Confidence Intervals 0.000 ±
Sensitivity 0.000
Positive Predictive Value 0.000
Nr of predictions 1

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2. Individual counts for Carnac(seed) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
4FRG_B

AdoCbl-variant links to Rfam database...

0.00 0.00 0.00 0 3486 0 0 0 0 32

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

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