Table of contents:
- Overview
- Performance Plots
- Performance of ContextFold
- scored higher in this pairwise comparison
- Performance of PETfold_2.0(20)
- scored lower in this pairwise comparison
- Compile and download dataset for ContextFold & PETfold_2.0(20) [.zip] - may take several seconds...
Overview
| Metric |
ContextFold |
|
PETfold_2.0(20) |
|---|
| MCC |
0.760 |
>
|
0.647 |
| Average MCC ± 95% Confidence Intervals |
0.760
±
|
>
|
0.647
±
|
| Sensitivity |
0.579 |
>
|
0.509 |
| Positive Predictive Value |
1.000 |
>
|
0.829 |
| Total TP |
33 |
>
|
29 |
| Total TN |
6988 |
>
|
6986 |
| Total FP |
0 |
<
|
6 |
| Total FP CONTRA |
0 |
<
|
1 |
| Total FP INCONS |
0 |
<
|
5 |
| Total FP COMP |
0 |
=
|
0 |
| Total FN |
24 |
<
|
28 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of ContextFold and PETfold_2.0(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for ContextFold
and PETfold_2.0(20)).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for ContextFold and PETfold_2.0(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for ContextFold
and PETfold_2.0(20)).
Performance of ContextFold
- scored higher in this pairwise comparison
1. Total counts & total scores for ContextFold
| Total Base Pair Counts |
|---|
| Total TP |
33 |
| Total TN |
6988 |
| Total FP |
0 |
| Total FP CONTRA |
0 |
| Total FP INCONS |
0 |
| Total FP COMP |
0 |
| Total FN |
24 |
| Total Scores |
|---|
| MCC |
0.760 |
| Average MCC ± 95% Confidence Intervals |
0.760
±
|
| Sensitivity |
0.579 |
| Positive Predictive Value |
1.000 |
| Nr of predictions |
1 |
Performance of PETfold_2.0(20)
- scored lower in this pairwise comparison
1. Total counts & total scores for PETfold_2.0(20)
| Total Base Pair Counts |
|---|
| Total TP |
29 |
| Total TN |
6986 |
| Total FP |
6 |
| Total FP CONTRA |
1 |
| Total FP INCONS |
5 |
| Total FP COMP |
0 |
| Total FN |
28 |
| Total Scores |
|---|
| MCC |
0.647 |
| Average MCC ± 95% Confidence Intervals |
0.647
±
|
| Sensitivity |
0.509 |
| Positive Predictive Value |
0.829 |
| Nr of predictions |
1 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
