Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_2.0(seed)
- scored higher in this pairwise comparison
- Performance of Pknots
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_2.0(seed) & Pknots [.zip] - may take several seconds...
Overview
| Metric |
PETfold_2.0(seed) |
|
Pknots |
|---|
| MCC |
0.769 |
>
|
0.607 |
| Average MCC ± 95% Confidence Intervals |
0.771
±
0.133
|
>
|
0.642
±
2.942
|
| Sensitivity |
0.642 |
>
|
0.516 |
| Positive Predictive Value |
0.924 |
>
|
0.721 |
| Total TP |
61 |
>
|
49 |
| Total TN |
11141 |
>
|
11139 |
| Total FP |
7 |
<
|
19 |
| Total FP CONTRA |
1 |
<
|
2 |
| Total FP INCONS |
4 |
<
|
17 |
| Total FP COMP |
2 |
>
|
0 |
| Total FN |
34 |
<
|
46 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_2.0(seed) and Pknots. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_2.0(seed)
and Pknots).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_2.0(seed) and Pknots. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_2.0(seed)
and Pknots).
Performance of PETfold_2.0(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_2.0(seed)
| Total Base Pair Counts |
|---|
| Total TP |
61 |
| Total TN |
11141 |
| Total FP |
7 |
| Total FP CONTRA |
1 |
| Total FP INCONS |
4 |
| Total FP COMP |
2 |
| Total FN |
34 |
| Total Scores |
|---|
| MCC |
0.769 |
| Average MCC ± 95% Confidence Intervals |
0.771
±
0.133
|
| Sensitivity |
0.642 |
| Positive Predictive Value |
0.924 |
| Nr of predictions |
2 |
Performance of Pknots
- scored lower in this pairwise comparison
1. Total counts & total scores for Pknots
| Total Base Pair Counts |
|---|
| Total TP |
49 |
| Total TN |
11139 |
| Total FP |
19 |
| Total FP CONTRA |
2 |
| Total FP INCONS |
17 |
| Total FP COMP |
0 |
| Total FN |
46 |
| Total Scores |
|---|
| MCC |
0.607 |
| Average MCC ± 95% Confidence Intervals |
0.642
±
2.942
|
| Sensitivity |
0.516 |
| Positive Predictive Value |
0.721 |
| Nr of predictions |
2 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
