Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_2.0(seed)
- scored higher in this pairwise comparison
- Performance of Vsfold4
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_2.0(seed) & Vsfold4 [.zip] - may take several seconds...
Overview
Metric |
PETfold_2.0(seed) |
|
Vsfold4 |
MCC |
0.761 |
>
|
0.167 |
Average MCC ± 95% Confidence Intervals |
0.761
±
|
>
|
0.167
±
|
Sensitivity |
0.614 |
>
|
0.123 |
Positive Predictive Value |
0.946 |
>
|
0.241 |
Total TP |
35 |
>
|
7 |
Total TN |
6984 |
<
|
6992 |
Total FP |
3 |
<
|
22 |
Total FP CONTRA |
0 |
<
|
1 |
Total FP INCONS |
2 |
<
|
21 |
Total FP COMP |
1 |
>
|
0 |
Total FN |
22 |
<
|
50 |
P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_2.0(seed) and Vsfold4. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_2.0(seed)
and Vsfold4).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_2.0(seed) and Vsfold4. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_2.0(seed)
and Vsfold4).
Performance of PETfold_2.0(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_2.0(seed)
Total Base Pair Counts |
Total TP |
35 |
Total TN |
6984 |
Total FP |
3 |
Total FP CONTRA |
0 |
Total FP INCONS |
2 |
Total FP COMP |
1 |
Total FN |
22 |
Total Scores |
MCC |
0.761 |
Average MCC ± 95% Confidence Intervals |
0.761
±
|
Sensitivity |
0.614 |
Positive Predictive Value |
0.946 |
Nr of predictions |
1 |
Performance of Vsfold4
- scored lower in this pairwise comparison
1. Total counts & total scores for Vsfold4
Total Base Pair Counts |
Total TP |
7 |
Total TN |
6992 |
Total FP |
22 |
Total FP CONTRA |
1 |
Total FP INCONS |
21 |
Total FP COMP |
0 |
Total FN |
50 |
Total Scores |
MCC |
0.167 |
Average MCC ± 95% Confidence Intervals |
0.167
±
|
Sensitivity |
0.123 |
Positive Predictive Value |
0.241 |
Nr of predictions |
1 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
|