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Table of contents:

  1. Overview

  2. Performance Plots

  3. Performance of Alterna - scored higher in this pairwise comparison

  4. Performance of PETfold_pre2.0(seed) - scored lower in this pairwise comparison

  5. Compile and download dataset for Alterna & PETfold_pre2.0(seed) [.zip] - may take several seconds...


Overview

Metric Alterna PETfold_pre2.0(seed)
MCC 0.471 > 0.411
Average MCC ± 95% Confidence Intervals 0.471 ± > 0.411 ±
Sensitivity 0.444 > 0.333
Positive Predictive Value 0.533 < 0.545
Total TP 8 > 6
Total TN 513 < 517
Total FP 7 > 5
Total FP CONTRA 0 = 0
Total FP INCONS 7 > 5
Total FP COMP 0 = 0
Total FN 10 < 12
P-value 0.0

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Performance plots


  1. Comparison of performance of Alterna and PETfold_pre2.0(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Alterna and PETfold_pre2.0(seed)).

  2. Comparison of average Matthews Correlation Coefficients (MCCs) for Alterna and PETfold_pre2.0(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Alterna and PETfold_pre2.0(seed)).

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Performance of Alterna - scored higher in this pairwise comparison

1. Total counts & total scores for Alterna

Total Base Pair Counts
Total TP 8
Total TN 513
Total FP 7
Total FP CONTRA 0
Total FP INCONS 7
Total FP COMP 0
Total FN 10
Total Scores
MCC 0.471
Average MCC ± 95% Confidence Intervals 0.471 ±
Sensitivity 0.444
Positive Predictive Value 0.533
Nr of predictions 1

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2. Individual counts for Alterna [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
2LC8_A

GP_knot1 links to Rfam database...

0.47 0.44 0.53 8 513 7 0 7 0 10

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Performance of PETfold_pre2.0(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(seed)

Total Base Pair Counts
Total TP 6
Total TN 517
Total FP 5
Total FP CONTRA 0
Total FP INCONS 5
Total FP COMP 0
Total FN 12
Total Scores
MCC 0.411
Average MCC ± 95% Confidence Intervals 0.411 ±
Sensitivity 0.333
Positive Predictive Value 0.545
Nr of predictions 1

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2. Individual counts for PETfold_pre2.0(seed) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
2LC8_A

GP_knot1 links to Rfam database...

0.41 0.33 0.55 6 517 5 0 5 0 12

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

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