Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(20)
- scored higher in this pairwise comparison
- Performance of Afold
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(20) & Afold [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(20) |
|
Afold |
|---|
| MCC |
0.428 |
>
|
0.353 |
| Average MCC ± 95% Confidence Intervals |
0.469
±
0.540
|
>
|
0.421
±
0.851
|
| Sensitivity |
0.400 |
<
|
0.420 |
| Positive Predictive Value |
0.465 |
>
|
0.304 |
| Total TP |
20 |
<
|
21 |
| Total TN |
7687 |
>
|
7661 |
| Total FP |
37 |
<
|
77 |
| Total FP CONTRA |
4 |
<
|
17 |
| Total FP INCONS |
19 |
<
|
31 |
| Total FP COMP |
14 |
<
|
29 |
| Total FN |
30 |
>
|
29 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(20) and Afold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(20)
and Afold).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(20) and Afold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(20)
and Afold).
Performance of PETfold_pre2.0(20)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(20)
| Total Base Pair Counts |
|---|
| Total TP |
20 |
| Total TN |
7687 |
| Total FP |
37 |
| Total FP CONTRA |
4 |
| Total FP INCONS |
19 |
| Total FP COMP |
14 |
| Total FN |
30 |
| Total Scores |
|---|
| MCC |
0.428 |
| Average MCC ± 95% Confidence Intervals |
0.469
±
0.540
|
| Sensitivity |
0.400 |
| Positive Predictive Value |
0.465 |
| Nr of predictions |
3 |
Performance of Afold
- scored lower in this pairwise comparison
1. Total counts & total scores for Afold
| Total Base Pair Counts |
|---|
| Total TP |
21 |
| Total TN |
7661 |
| Total FP |
77 |
| Total FP CONTRA |
17 |
| Total FP INCONS |
31 |
| Total FP COMP |
29 |
| Total FN |
29 |
| Total Scores |
|---|
| MCC |
0.353 |
| Average MCC ± 95% Confidence Intervals |
0.421
±
0.851
|
| Sensitivity |
0.420 |
| Positive Predictive Value |
0.304 |
| Nr of predictions |
3 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
