Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(20)
- scored higher in this pairwise comparison
- Performance of RDfolder
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(20) & RDfolder [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(20) |
|
RDfolder |
|---|
| MCC |
0.826 |
>
|
0.595 |
| Average MCC ± 95% Confidence Intervals |
0.797
±
0.178
|
>
|
0.591
±
0.232
|
| Sensitivity |
0.778 |
>
|
0.545 |
| Positive Predictive Value |
0.885 |
>
|
0.667 |
| Total TP |
77 |
>
|
54 |
| Total TN |
4505 |
<
|
4511 |
| Total FP |
12 |
<
|
29 |
| Total FP CONTRA |
4 |
<
|
7 |
| Total FP INCONS |
6 |
<
|
20 |
| Total FP COMP |
2 |
=
|
2 |
| Total FN |
22 |
<
|
45 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(20) and RDfolder. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(20)
and RDfolder).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(20) and RDfolder. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(20)
and RDfolder).
Performance of PETfold_pre2.0(20)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(20)
| Total Base Pair Counts |
|---|
| Total TP |
77 |
| Total TN |
4505 |
| Total FP |
12 |
| Total FP CONTRA |
4 |
| Total FP INCONS |
6 |
| Total FP COMP |
2 |
| Total FN |
22 |
| Total Scores |
|---|
| MCC |
0.826 |
| Average MCC ± 95% Confidence Intervals |
0.797
±
0.178
|
| Sensitivity |
0.778 |
| Positive Predictive Value |
0.885 |
| Nr of predictions |
5 |
Performance of RDfolder
- scored lower in this pairwise comparison
1. Total counts & total scores for RDfolder
| Total Base Pair Counts |
|---|
| Total TP |
54 |
| Total TN |
4511 |
| Total FP |
29 |
| Total FP CONTRA |
7 |
| Total FP INCONS |
20 |
| Total FP COMP |
2 |
| Total FN |
45 |
| Total Scores |
|---|
| MCC |
0.595 |
| Average MCC ± 95% Confidence Intervals |
0.591
±
0.232
|
| Sensitivity |
0.545 |
| Positive Predictive Value |
0.667 |
| Nr of predictions |
5 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
