Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
- Performance of Afold
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(seed) & Afold [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(seed) |
|
Afold |
|---|
| MCC |
0.698 |
>
|
0.454 |
| Average MCC ± 95% Confidence Intervals |
0.666
±
0.200
|
>
|
0.489
±
0.325
|
| Sensitivity |
0.624 |
>
|
0.495 |
| Positive Predictive Value |
0.788 |
>
|
0.427 |
| Total TP |
63 |
>
|
50 |
| Total TN |
10167 |
>
|
10130 |
| Total FP |
36 |
<
|
98 |
| Total FP CONTRA |
4 |
<
|
21 |
| Total FP INCONS |
13 |
<
|
46 |
| Total FP COMP |
19 |
<
|
31 |
| Total FN |
38 |
<
|
51 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(seed) and Afold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and Afold).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and Afold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and Afold).
Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(seed)
| Total Base Pair Counts |
|---|
| Total TP |
63 |
| Total TN |
10167 |
| Total FP |
36 |
| Total FP CONTRA |
4 |
| Total FP INCONS |
13 |
| Total FP COMP |
19 |
| Total FN |
38 |
| Total Scores |
|---|
| MCC |
0.698 |
| Average MCC ± 95% Confidence Intervals |
0.666
±
0.200
|
| Sensitivity |
0.624 |
| Positive Predictive Value |
0.788 |
| Nr of predictions |
5 |
Performance of Afold
- scored lower in this pairwise comparison
1. Total counts & total scores for Afold
| Total Base Pair Counts |
|---|
| Total TP |
50 |
| Total TN |
10130 |
| Total FP |
98 |
| Total FP CONTRA |
21 |
| Total FP INCONS |
46 |
| Total FP COMP |
31 |
| Total FN |
51 |
| Total Scores |
|---|
| MCC |
0.454 |
| Average MCC ± 95% Confidence Intervals |
0.489
±
0.325
|
| Sensitivity |
0.495 |
| Positive Predictive Value |
0.427 |
| Nr of predictions |
5 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
