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Table of contents:

  1. Overview

  2. Performance Plots

  3. Performance of PETfold_2.0(seed) - scored higher in this pairwise comparison

  4. Performance of PETfold_2.0(20) - scored lower in this pairwise comparison

  5. Compile and download dataset for PETfold_2.0(seed) & PETfold_2.0(20) [.zip] - may take several seconds...


Overview

Metric PETfold_2.0(seed) PETfold_2.0(20)
MCC 0.761 > 0.647
Average MCC ± 95% Confidence Intervals 0.761 ± > 0.647 ±
Sensitivity 0.614 > 0.509
Positive Predictive Value 0.946 > 0.829
Total TP 35 > 29
Total TN 6984 < 6986
Total FP 3 < 6
Total FP CONTRA 0 < 1
Total FP INCONS 2 < 5
Total FP COMP 1 > 0
Total FN 22 < 28
P-value 0.0

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Performance plots


  1. Comparison of performance of PETfold_2.0(seed) and PETfold_2.0(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PETfold_2.0(seed) and PETfold_2.0(20)).

  2. Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_2.0(seed) and PETfold_2.0(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PETfold_2.0(seed) and PETfold_2.0(20)).

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Performance of PETfold_2.0(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_2.0(seed)

Total Base Pair Counts
Total TP 35
Total TN 6984
Total FP 3
Total FP CONTRA 0
Total FP INCONS 2
Total FP COMP 1
Total FN 22
Total Scores
MCC 0.761
Average MCC ± 95% Confidence Intervals 0.761 ±
Sensitivity 0.614
Positive Predictive Value 0.946
Nr of predictions 1

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2. Individual counts for PETfold_2.0(seed) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
3J3V_B

5S_rRNA links to Rfam database...

0.76 0.61 0.95 35 6984 3 0 2 1 22

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Performance of PETfold_2.0(20) - scored lower in this pairwise comparison

1. Total counts & total scores for PETfold_2.0(20)

Total Base Pair Counts
Total TP 29
Total TN 6986
Total FP 6
Total FP CONTRA 1
Total FP INCONS 5
Total FP COMP 0
Total FN 28
Total Scores
MCC 0.647
Average MCC ± 95% Confidence Intervals 0.647 ±
Sensitivity 0.509
Positive Predictive Value 0.829
Nr of predictions 1

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2. Individual counts for PETfold_2.0(20) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
3J3V_B

5S_rRNA links to Rfam database...

0.65 0.51 0.83 29 6986 6 1 5 0 28

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

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