Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(20)
- scored higher in this pairwise comparison
- Performance of Afold
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(20) & Afold [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(20) |
|
Afold |
|---|
| MCC |
0.526 |
>
|
0.416 |
| Average MCC ± 95% Confidence Intervals |
0.484
±
0.443
|
>
|
0.426
±
0.499
|
| Sensitivity |
0.410 |
>
|
0.381 |
| Positive Predictive Value |
0.679 |
>
|
0.459 |
| Total TP |
55 |
>
|
51 |
| Total TN |
27499 |
>
|
27469 |
| Total FP |
40 |
<
|
82 |
| Total FP CONTRA |
0 |
<
|
8 |
| Total FP INCONS |
26 |
<
|
52 |
| Total FP COMP |
14 |
<
|
22 |
| Total FN |
79 |
<
|
83 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(20) and Afold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(20)
and Afold).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(20) and Afold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(20)
and Afold).
Performance of PETfold_pre2.0(20)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(20)
| Total Base Pair Counts |
|---|
| Total TP |
55 |
| Total TN |
27499 |
| Total FP |
40 |
| Total FP CONTRA |
0 |
| Total FP INCONS |
26 |
| Total FP COMP |
14 |
| Total FN |
79 |
| Total Scores |
|---|
| MCC |
0.526 |
| Average MCC ± 95% Confidence Intervals |
0.484
±
0.443
|
| Sensitivity |
0.410 |
| Positive Predictive Value |
0.679 |
| Nr of predictions |
4 |
Performance of Afold
- scored lower in this pairwise comparison
1. Total counts & total scores for Afold
| Total Base Pair Counts |
|---|
| Total TP |
51 |
| Total TN |
27469 |
| Total FP |
82 |
| Total FP CONTRA |
8 |
| Total FP INCONS |
52 |
| Total FP COMP |
22 |
| Total FN |
83 |
| Total Scores |
|---|
| MCC |
0.416 |
| Average MCC ± 95% Confidence Intervals |
0.426
±
0.499
|
| Sensitivity |
0.381 |
| Positive Predictive Value |
0.459 |
| Nr of predictions |
4 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
