Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
- Performance of Afold
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(seed) & Afold [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(seed) |
|
Afold |
|---|
| MCC |
0.639 |
>
|
0.453 |
| Average MCC ± 95% Confidence Intervals |
0.584
±
0.186
|
>
|
0.469
±
0.267
|
| Sensitivity |
0.521 |
>
|
0.412 |
| Positive Predictive Value |
0.789 |
>
|
0.503 |
| Total TP |
101 |
>
|
80 |
| Total TN |
33745 |
>
|
33714 |
| Total FP |
37 |
<
|
103 |
| Total FP CONTRA |
1 |
<
|
9 |
| Total FP INCONS |
26 |
<
|
70 |
| Total FP COMP |
10 |
<
|
24 |
| Total FN |
93 |
<
|
114 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(seed) and Afold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and Afold).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and Afold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and Afold).
Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(seed)
| Total Base Pair Counts |
|---|
| Total TP |
101 |
| Total TN |
33745 |
| Total FP |
37 |
| Total FP CONTRA |
1 |
| Total FP INCONS |
26 |
| Total FP COMP |
10 |
| Total FN |
93 |
| Total Scores |
|---|
| MCC |
0.639 |
| Average MCC ± 95% Confidence Intervals |
0.584
±
0.186
|
| Sensitivity |
0.521 |
| Positive Predictive Value |
0.789 |
| Nr of predictions |
6 |
Performance of Afold
- scored lower in this pairwise comparison
1. Total counts & total scores for Afold
| Total Base Pair Counts |
|---|
| Total TP |
80 |
| Total TN |
33714 |
| Total FP |
103 |
| Total FP CONTRA |
9 |
| Total FP INCONS |
70 |
| Total FP COMP |
24 |
| Total FN |
114 |
| Total Scores |
|---|
| MCC |
0.453 |
| Average MCC ± 95% Confidence Intervals |
0.469
±
0.267
|
| Sensitivity |
0.412 |
| Positive Predictive Value |
0.503 |
| Nr of predictions |
6 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
