Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
- Performance of Alterna
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(seed) & Alterna [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(seed) |
|
Alterna |
|---|
| MCC |
0.683 |
>
|
0.545 |
| Average MCC ± 95% Confidence Intervals |
0.643
±
0.540
|
>
|
0.537
±
0.224
|
| Sensitivity |
0.540 |
>
|
0.460 |
| Positive Predictive Value |
0.870 |
>
|
0.656 |
| Total TP |
47 |
>
|
40 |
| Total TN |
7831 |
>
|
7824 |
| Total FP |
8 |
<
|
21 |
| Total FP CONTRA |
1 |
<
|
3 |
| Total FP INCONS |
6 |
<
|
18 |
| Total FP COMP |
1 |
>
|
0 |
| Total FN |
40 |
<
|
47 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(seed) and Alterna. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and Alterna).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and Alterna. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and Alterna).
Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(seed)
| Total Base Pair Counts |
|---|
| Total TP |
47 |
| Total TN |
7831 |
| Total FP |
8 |
| Total FP CONTRA |
1 |
| Total FP INCONS |
6 |
| Total FP COMP |
1 |
| Total FN |
40 |
| Total Scores |
|---|
| MCC |
0.683 |
| Average MCC ± 95% Confidence Intervals |
0.643
±
0.540
|
| Sensitivity |
0.540 |
| Positive Predictive Value |
0.870 |
| Nr of predictions |
3 |
Performance of Alterna
- scored lower in this pairwise comparison
1. Total counts & total scores for Alterna
| Total Base Pair Counts |
|---|
| Total TP |
40 |
| Total TN |
7824 |
| Total FP |
21 |
| Total FP CONTRA |
3 |
| Total FP INCONS |
18 |
| Total FP COMP |
0 |
| Total FN |
47 |
| Total Scores |
|---|
| MCC |
0.545 |
| Average MCC ± 95% Confidence Intervals |
0.537
±
0.224
|
| Sensitivity |
0.460 |
| Positive Predictive Value |
0.656 |
| Nr of predictions |
3 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
