Target Molecules

Using the box below, select the type of molecules of interest. By selecting a type of molecule such as, DNA, RNA, or DNA/RNA hybrids, the "Sub-types" selector will automatically filter the molecular subtypes inherent in the selected class. To understand classes' and subclasses' meaning, please, go on the Frequently Asked Questions Section (FAQ)

Type

Subtype

FILTER

ID	Experiment	Moiety Type	Moiety Subtype	Method	Source	Description	PDB
12	acid_quad_pH5.0	DNA	ssDNA	In-House	doi: 10.1093/nar/gkp026	i-motif at pH 5.0	X
13	acid_quad_pH6.7	DNA	ssDNA	In-House	doi: 10.1093/nar/gkp026	partial i-motif formation at pH 6.7	X
14	acid_quad_pH7.2	DNA	ssDNA	In-House	doi: 10.1093/nar/gkp026	i-motif at pH 7.2	X
15	acid_quad_pH9.2	DNA	ssDNA	In-House	doi: 10.1093/nar/gkp026	i-motif at pH 9.2	X
16	d_pG_5_self	DNA	ssDNA	In-House	10.1002/bip.1974.360131011	Guanine oligo nucleotide (5 nucleotides) self complexed as a quadruplex	X
17	d_pG_5_single	DNA	ssDNA	In-House	10.1002/bip.1974.360131011	Guanine oligo nucleotide (5 nucleotides)	X
18	d_T10C4A10_antiparallel	DNA	ssDNA	In-House	10.1126/science.3399890	antiparallel ssDNA hairpin of 10 Thymines, 4 Cytidines , 10 Adenines	X
19	d_T10C4A10_parallel	DNA	ssDNA	In-House	10.1126/science.3399890	parallel ssDNA hairpin of 10 Thymines, 4 Cytidines, and 10 Adenines	X
20	d_T10G4A10_antiparallel	DNA	ssDNA	In-House	10.1126/science.3399890	antiparallel ssDNA hairpin	X
21	d_T10G4A10_parallel	DNA	ssDNA	In-House	10.1126/science.3399890	parallel ssDNA hairpin	X
22	G3(TTA)7_quad	DNA	ssDNA	In-House	10.1093/nar/gkp026	quadruplex	X
23	G3(TTAG3)7_quad_KCl_EtOH	DNA	ssDNA	In-House	10.1093/nar/gkp026	quadruplex	X
24	G4_time_0min	DNA	ssDNA	In-House	10.1093/nar/gkp026	quadruplex	X
25	G4_time_3.5h	DNA	ssDNA	In-House	10.1093/nar/gkp026	quadruplex	X
26	G4_time_10min	DNA	ssDNA	In-House	10.1093/nar/gkp026	quadruplex	X
27	G4_time_24h	DNA	ssDNA	In-House	10.1093/nar/gkp026	quadruplex	X
28	G4T4G4_Na0.001M	DNA	ssDNA	In-House	10.1093/nar/gkp026	Unformed antiparallel quadruplex	X
29	G4T4G4_Na0.01M	DNA	ssDNA	In-House	doi: 10.1093/nar/gkp026	Partial antiparallel quadruplex	X
30	G4T4G4_Na0.1M	DNA	ssDNA	In-House	10.1093/nar/gkp026	Antiparallel quadruplex	X
31	G4T4G4_Na0.5M	DNA	ssDNA	In-House	10.1093/nar/gkp026	Antiparallel quadruplex	X
34	poly[d(AC)]•poly[d(GT]B-form	DNA	dsDNA	Synchrotron	10.1093/nar/15.18.7627	B-DNA	X
35	poly[d(AC)]•poly[d(GT)]Z-form	DNA	dsDNA	Synchrotron	10.1093/nar/15.18.7627	Z-DNA	X
36	poly[d(AG)]	DNA	ssDNA	In-House	10.1093/nar/16.2.719	poly AG ssDNA	X
37	poly[d(AG)]•poly[d(CT)]	DNA	dsDNA	In-House	10.1093/nar/16.2.719	not available	X
38	poly[d(CT)]	DNA	ssDNA	In-House	10.1093/nar/16.2.719	not available	X
39	poly[d(GC)]•poly[d(GC)]	DNA	dsDNA	Synchrotron	10.1002/bip.360251211	not available	X
40	poly[d(GC)]•poly[d(GC)]A-form	DNA	dsRNA	Synchrotron	10.1093/nar/13.13.4983	A-DNA	X
41	poly[d(GC)]•poly[d(GC)]B-form	DNA	dsDNA	Synchrotron	10.1093/nar/13.13.4983	B-DNA	X
42	poly[d(GC)]•poly[d(GC)]Z-form	DNA	dsDNA	Synchrotron	10.1093/nar/13.13.4983	Z-DNA	X
43	poly[d(Gm5C)]•poly[d(Gm5C)]B-form	DNA	ssDNA	Synchrotron	10.1111/j.1751-1097.1986.tb04667.x	methylated double stranded B-DNA	X
44	poly[d(Gm5C)]•poly[d(Gm5C)]Z-form	DNA	dsDNA	Synchrotron	10.1111/j.1751-1097.1986.tb04667.x	5 cytidine methylated double stranded DNA	X
45	poly[d(GT)]selfcomplexed	DNA	ssDNA	In-House	doi.org/10.1002/bip.1977.360160613	(GT)n self complexed	X
46	poly[d(GT)]singlestranded	DNA	ssDNA	In-House	doi.org/10.1002/bip.1977.360160613	(GT)n single stranded	X
47	poly[d(IC)]•poly[d(IC)]	DNA	dsDNA	Synchrotron	10.1002/bip.360220602	not available	X
48	poly[r(AC)]•poly[r(GU)]	RNA	dsRNA	Synchrotron	doi.org/10.1002/bip.1981.360200702	not available	!!!
49	poly[r(AC)]•poly[r(IU)]	RNA	dsRNA	In-House	10.1002/bip.360250914	not available	!!!
50	poly[r(AG)]•poly[r(CU)]	RNA	dsRNA	Synchrotron	10.1002/bip.360250914	not available	!!!
51	poly[r(AI)]•poly[r(CU)]	RNA	dsRNA	In-House	10.1002/bip.360250914	not available	X
52	poly[r(GC)]•poly[r(GC)]	RNA	dsRNA	In-House	doi.org/10.1002/bip.1981.360200702	not available	X
53	poly[r(GC)]•poly[r(GC)]A-form	RNA	dsRNA	Synchrotron	10.1093/nar/13.13.4983	not available	X
54	poly[r(GC)]•poly[r(GC)]sodium_perchlorate	RNA	dsRNA	Synchrotron	10.1002/bip.360290204	not available	X
55	poly[r(GC)]•poly[r(GC)]Z-form	RNA	dsRNA	Synchrotron	10.1093/nar/13.13.4983	not available	X
56	poly[r(GU)]self-complexed	RNA	qsRNA	In-House	doi.org/10.1002/bip.1977.360160613	Quadruplex	X
57	poly[r(GU)] single-stranded	RNA	ssRNA	In-House	doi.org/10.1002/bip.1977.360160613	not available	!!!
58	poly[r(IC)]•poly[r(IC)]	RNA	dsRNA	In-House	10.1002/bip.360250914	not available	X
59	poly[d(C)]	DNA	ssDNA	In-House	10.1080/07391102.1993.10508677	not available	X
60	poly[d(C+)] • poly[d(C+)]	DNA	dsDNA	In-House	doi.org/10.1016/0076-6879(92)11021-A	Protoned DNA	X
61	poly[d(G)]	DNA	qsDNA	In-House	10.1002/bip.1974.360131011	not available	X
62	poly[d(G)]•poly[d(C)]	DNA	dsDNA	Synchrotron	10.1002/bip.360251211	not available	X
63	poly[d(I)]	DNA	ssDNA	In-House	10.1002/bip.1974.360131011	not available	X
64	poly[d(T)]	DNA	ssDNA	In-House	10.1093/nar/14.24.10071	poly-T	X
65	poly[r(A)]	RNA	ssRNA	Synchrotron	doi.org/10.1002/bip.360290205	poly-A	!!!
66	poly[r(A)]•poly[r(U)]	RNA	dsRNA	Synchrotron	doi.org/10.1002/bip.1981.360200702	not available	X
67	poly[r(A+)] • poly[r(A+)]	RNA	dsRNA	Synchrotron	doi.org/10.1002/bip.360210907	Parallel double strand DNA	X
68	poly[r(C)]	RNA	ssRNA	Synchrotron	doi.org/10.1002/bip.360290205	not available	X
69	poly[r(C+)] • poly[r(C+)]	RNA	dsRNA	Synchrotron	doi.org/10.1002/bip.360290205	protonated (C)n (acidic pH)	X
70	poly[r(G)]	RNA	ssRNA	In-House	10.1021/bi00804a026	not available	X
71	poly[r(G)]•poly[r(C)]	RNA	dsRNA	In-House	doi.org/10.1002/bip.1981.360200702	not available	X
72	poly[r(G)]•poly[r(C)]	RNA	dsRNA	Synchrotron	doi.org/10.1002/bip.360290205	(G)n•(C)n sodium perchlorate RNA double strand helix	X
73	poly[r(I)]•poly[r(C)]	RNA	dsRNA	In-House	10.1002/bip.360250914	not available	X
74	poly[r(I)]self	RNA	ssRNA	In-House	10.1007/BF01184691	(I)n self complexed 1M NaCl	X
75	poly[r(I)]single	RNA	ssRNA	In-House		(I)n single stranded 0.01 M NaCl	!!!
76	poly[r(U)]	RNA	ssRNA	Synchrotron	doi.org/10.1002/bip.360290205	not available	X
77	poly[d(AT)]•poly[d(AT)]	DNA	dsDNA	Synchrotron	10.1002/bip.360240508	Flexible helix	X
78	poly[r(AAU)]•poly[r(AUU)]	RNA	dsRNA	In-House	doi.org/10.1002/bip.1981.360200702	(AAU)•(AUU) double stranded RNA helix	X
79	poly[r(AU)]•poly[r(AU)]	RNA	dsRNA	In-House	doi.org/10.1002/bip.1981.360200702	not available	X
81	poly[d(U)]	DNA	ssDNA	In-House	10.1093/nar/14.24.10071	(U)n single stranded DNA	X
82	pseudoknot_experiment.gen	RNA	ssRNA	Synchrotron		Pseudoknot	X
83	(A5T5)14 • (A5T5)14	DNA	dsDNA	Synchrotron	SOLEIL	(AAAAATTTTTAAAAATTTTT)7 Bent DNA	X
84	(AC3)4	DNA	ssDNA	Synchrotron	SOLEIL	i-motif	X
85	(G3T)4	DNA	ssDNA	Synchrotron	SOLEIL	Parallel Quadruplex	X
86	(G3T)4 • (AC3)4	DNA	qsDNA	Synchrotron	SOLEIL	(G3T)4 • (AC3)4 G-Quadruplex and i-motif	X
87	(G4T2)4	DNA	ssDNA	Synchrotron	SOLEIL	Antiparallel quadruplex	X
88	(G4T2)4	DNA	qsDNA	Synchrotron	SOLEIL	Antiparallel quadruplex	X
89	r(AU)29A	RNA	dsRNA	Synchrotron	SOLEIL	dsRNA A-form	X
90	(A)20(AT)20(T)20	DNA	dsDNA	Synchrotron	SOLEIL	not available	X
91	[(A)20(T)20(A)20]•[(T)20(A)20(T)20]	DNA	dsDNA	Synchrotron	SOLEIL	not available	X
92	A-DNA	DNA	dsDNA	Synchrotron	SOLEIL	Double helix A-DNA - Esposito dodecamer	X
93	d(AT)29A	DNA	dsDNA	Synchrotron	SOLEIL	not available	X
94	B-DNA	DNA	dsDNA	Synchrotron	SOLEIL	Double helix B-DNA - Dickerson dodecamer	X
95	BDNA	DNA	gDNA	Synchrotron	SOLEIL	Genomic DNA	!!!
96	bulgeflip	RNA	ssRNA	Synchrotron	SOLEIL	not available	X
97	bulgekink	RNA	ssRNA	Synchrotron	SOLEIL	not available	X
98	Single Palindromic Oligo with non Palindromic C at the 5’ end	DNA	dsDNA	Synchrotron	SOLEIL	Forms a hairpin or possible a ds duplex	X
99	Control5MethylC	DNA	dsDNA	Synchrotron	SOLEIL	To compare to Seq5MethylC ID=139	X
100	(CA4T4G)2	DNA	dsDNA	Synchrotron	SOLEIL	not available	X
101	d(A)59•r(U59)	HYBRID	dsDNA-ssRNA	Synchrotron	SOLEIL	not available	X
102	d(A+)59 • d(A+)59 pH2	DNA	dsDNA	Synchrotron	SOLEIL	Parallel DNA	X
103	d(A)59 pH5	DNA	ssDNA	Synchrotron	SOLEIL	Parallel helix duplex	X
104	d(A)59 pH9	DNA	ssDNA	Synchrotron	SOLEIL	not available	X
105	d(A)59d(T)59	DNA	dsDNA	Synchrotron	SOLEIL	not available	X
106	G3T4	DNA	qsDNA	Synchrotron	SOLEIL	Quadruplex	X
107	d(G)7	DNA	qsDNA	Synchrotron	SOLEIL	Quadruplex	X
108	R_loop_Heat	HYBRID	dsDNA-ssRNA	Synchrotron	SOLEIL	Relaxed by heat and cooled down at roomtemperature	X
109	R_loop_RT	HYBRID	dsDNA-ssRNA	Synchrotron	SOLEIL	Relaxed at Room Temperature	X
110	DsrA 14 ARN 7 mM	RNA	ssRNA	Synchrotron	SOLEIL	not available	X
111	DsrA 22 ADN 10mM	DNA	ssDNA	Synchrotron	SOLEIL	not available	X
112	DsrA 22 ARN 10mM	RNA	ssRNA	Synchrotron	SOLEIL	not available	X
113	DsrA 8 ARN 4mM	RNA	ssRNA	Synchrotron	SOLEIL	not available	X
114	DsrA 8mut ARN	RNA	ssRNA	Synchrotron	SOLEIL	not available	X
115	DsrA entier ARN	RNA	ssRNA	Synchrotron	SOLEIL	not available	X
116	DsrA22 GC ADN 10mM-85 C	DNA	ssDNA	Synchrotron	SOLEIL	not available	X
117	DsrA8mut ADN	DNA	ssDNA	Synchrotron	SOLEIL	not available	X
118	flexible_helix	DNA	ssDNA	Synchrotron	SOLEIL	not available	X
119	i_motif_ph5	DNA	ssDNA	Synchrotron	SOLEIL	i-motif	X
120	i-motif ph7	DNA	ssDNA	Synchrotron	SOLEIL	Partial i-motif	X
121	K-turn	RNA	dsRNA	Synchrotron	SOLEIL	k-turn	X
122	lambda_DNA	DNA	gDNA	Synchrotron	SOLEIL	Genomic DNA	X
123	Anti Parallel DNA	DNA	dsDNA	Synchrotron	SOLEIL	Possible Anti Parallel DNA under certain conditions	X
124	pentaloop	DNA	ssDNA	Synchrotron	SOLEIL	not available	X
125	pseudoknot	RNA	ssRNA	Synchrotron	SOLEIL	Pseudoknot	X
126	quadruplex ARN (G3U)4	RNA	qsRNA	Synchrotron	SOLEIL	Quadruplex	!!!
127	R-loop Bottom Top RNA	HYBRID	dsDNA-ssRNA	Synchrotron	SOLEIL	R-loop	!!!
128	Rloop bottom top	DNA	dsDNA	Synchrotron	SOLEIL	R-loop	X
129	Rloop bottom	DNA	ssDNA	Synchrotron	SOLEIL	R-loop	X
130	R-loop RNA	RNA	ssRNA	Synchrotron	SOLEIL	R-loop	X
131	R-loop Top	DNA	ssDNA	Synchrotron	SOLEIL	R-loop	X
132	r(A)59	RNA	ssRNA	Synchrotron	SOLEIL	not available	X
133	ret1	DNA	qsDNA	Synchrotron	SOLEIL	Quadruplex	X
134	ret2	DNA	qsDNA	Synchrotron	SOLEIL	Quadruplex	X
135	r(G)7	RNA	qsRNA	Synchrotron	SOLEIL	Quadruplex	X
136	rna-g-quadruplex	RNA	qsRNA	Synchrotron	SOLEIL	Quadruplex	X
137	RNA i-motif	RNA	qsRNA	Synchrotron	SOLEIL	i-motif on RNA	X
138	r(U)59	RNA	ssRNA	Synchrotron	SOLEIL	not available	X
139	Seq5MethylC	DNA	dsDNA	Synchrotron	SOLEIL	Methylated DNA on some C (noted ?)	X
140	Slipped strand	DNA	dsDNA	Synchrotron	SOLEIL	Slipped Strand DNA	X
141	tetraloop	DNA	ssDNA	Synchrotron	SOLEIL	not available	X
142	Py:Pu-Pu triplexS1	DNA	tsDNA	Synchrotron	SOLEIL	Triple helix intramolecular at 0.5mM	X
143	Triplex S1: Py:Pu-Pu	DNA	tsDNA	Synchrotron	SOLEIL	Triple helix intramolecular at 1mM	X
144	Py:Pu-Py triplexS2	DNA	tsDNA	Synchrotron	SOLEIL	Triple helix intramolecular at 0.5mM	X
145	Triplex S2: Py:Pu-Py	DNA	tsDNA	Synchrotron	SOLEIL	Triple helix intramolecular at 1mM	X
146	Triplex Py:Pu-Pu inter	DNA	tsDNA	Synchrotron	SOLEIL	Triple helix intermolecular	X
147	Triplex Py:Pu-Py inter	DNA	tsDNA	Synchrotron	SOLEIL	Triple helix intermolecular	X
148	tRNA	RNA	ssRNA	Synchrotron	SOLEIL	tRNA	!!!
149	Partially unwound DNA	DNA	dsDNA	Synchrotron	SOLEIL	not available	X