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The results of your job 'Test_Analysis' are ready.


Structure after analysis:
[Test_Analysis.cleaned.without_modifications.renumbered_chain.pdb]

ModeRNA could not change sequence because of the errors:

  • Bad sequence length. Sequence should have 76 characters.

The analysis was performed on the original structure without changing the sequence!

Modifications:

Modifications present in the structure:
- Residue 16: D (D, 6U, dihydrouridine)
- Residue 17: D (D, 6U, dihydrouridine)
- Residue 20: D (D, 6U, dihydrouridine)
- Residue 37: E (m6t6A, 15A, N6-methyl-N6-threonylcarbamoyladenosine)
- Residue 46: 7 (m7G, 7G, 7-methylguanosine)
- Residue 54: T (m5U, 5U, 5-methyluridine)
- Residue 55: P (Y, 1U, pseudouridine)
Download: [.txt file with all modifications]

Sequence of a given structure:

GCCGAUAUAGCUCAGUUGGUAGAGCAGCGCAUUCGUAAUGCGAAGGUCGU
AGGUUCGACUCCUAUUAUCGGCACCA
Download: [.fasta file with the sequence]

Secondary structure of a given structure:

(((((((..((((........))))..((((.......))))......((
(((.......))))))))))))....

Java Get Powered

Download: [.vienna file with the secondary structure]

Geometry of the structure:

        
Unusual dihedral angles:
- Residues 39 --- 38 (X:O3',X+1:P,X+1:O5',X+1:C5'): 21.68
- Residues 8 --- 7 (X:C4',X:C3',X:O3',X+1:P): 97.51
- Residues 37 --- 38 (X:C4',X:C3',X:O3',X+1:P): 314.99
- Residues 39 --- 38 (X:C4',X:C3',X:O3',X+1:P): 19.57
- Residues 48 --- 49 (X:C4',X:C3',X:O3',X+1:P): 110.25
- Residue 20 (X:O5',X:C5',X:C4',X:C3'): 1.62
- Residues 15 --- 16 (X:C3',X:O3',X+1:P,X+1:O5'): 16.95



    
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