CompaRNA - on-line benchmarks of RNA structure prediction methods
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RNA Secondary Structure Atlas - PDB - SSU_rRNA_bacteria



RNA: 3J2C_N

AAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAACAGGAAGAAGCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGG
Reference structure (std) [ sec struct ] .......((((..<.<<<..))))..((..(((((..(((((((((....(((.(((...(...((.((..(...(.((.(....).)).)....)))..)).).......(.(.......((((((..(....((((((..(.(......((((((....)))))).......).).....(((....)))....((.((...((....)).)).))..))))))...).)))))).(((....(((..(((((((.........))))))))))......)))..((((((((....))))...))))).).(((((............)))))..(((....)))....)))))).).....(.(((...(((((....)))).))))).)).))))))..(((.......((((....))))......)))...(.(((((...(....((((((..........)).)))).....)....)))))....)..((((((((...{{{{{.....{{.)))}}.......}}}}})))))..))))).))...........((..(...[.((.(...((..(((((((.((((..((((......((((((.....))))))....))))..))..)))))))))...((.(((((...(((((((.(..((((((((...((........))......))))))))...).......((....)).)))))))..)))).).))....))...).))....(((((....((...(((...........)))...)).)))))...........[[[[[..((((.(((((((.....))))))).))))...[[..).]].....]]]]].].)).(((......((.(....).))....)))...>>>.>........
Reference structure (ext) [ sec struct ] .(.....(((q(.uuuuu)(Q)))(((((.((((((.hhhhhh((v.((..(a((((..(..(iii)((..((((((((((....))))))).)))))..II.)...(.((((()..(()((((((((.(.w((((((((((((((((.((((((((c(.C)))))))))..)))))((().((((..)))).)).(((((()((()..()))))))))))))))))W.)))))))))((((mm((((.(tt)(<<<.<.....)>>>>..TT))))...)M)))).((((((((n.(N)))))...))).)))ssssssss)).S.S).SSSSSS((((.(..))))))..)))A)).V..).(()((((.)((((((..))))).)))))))))HHHHHH(.(((((j....(((((..))))).(J))))))bd.(((((((((((.(((((((((.(.(...)I))).)))))))..)).))))))).)BD)..((((pppp..)((((((...(((.PPP)))...)..)))))P.))).)))))))))).)....f..)fo{g..(O}.fffffffffffffffff(.)fffffffff....f.f.(((((...))))))FF...FFFFFFFF..F..FFFFFF..(((.(((((((([[[[[[[((((((((((((((((((l.k(L.))))...))))))))))))))....e[)(((..)))E]]]]]]]))))))).).))F.FFFFFFFFFF((..(((.(....((((((((..(.....)K))))))))).)).))..)..)....(((((((.(((]((((((((.)....))))))).)))()((((.G))))..).))))))...FF((((.().M(((((..)))))...)))).))UUUUU........
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PETfold_pre2.0(seed) [ FASTA input ] [ sec struct ] ...............((((.....(((((.((((((.(((((((((....(((.(((....(..((.((.....((.((((....)))).))....))..)))((......(((..((...(((((((.((...(((((((.((((.(.(.((((((....)))))).)..).)))).....(((....)))....((..................)).)))))))..))))))))).(((.((.(((..((((((((.......)))))))))))...)).)))))((((((((....))))...))))))).(((((.(((.....)))))))).((((....)))))).))))))........((((((...(((....))))).))))))).))))))..((((....((((((....))))))...))))..((((((((.(((................................).)).))))))...)).(((((......(((((((((.((....)))))...))))))))))).))))))))))(......))((((((.....((((...(((((((((((.(((((((((((.....((((((.....))))))...)))))))))..)))))))))...((((((((...(((((((((..((((((((((.(((......)))....)))))))))).....))....((....)).)))))))..))))).)))..))))...))))....(((((((...(...((((....(...)))))...)))))))).....)....(....)(....)....)))))...))))...(...(())..).....((......))..(......).......(((....)))........................
PETfold_pre2.0(20) [ FASTA input ] [ sec struct ] ...............((((......((((.((((((.(((((((((.(..(((.(((..((((.((.((......(.((((....)))).).....))..))..))).)..(((.......(((((((.((...(((((((.((((.....((((((....))))))......)))).....(((....)))....((..................)).)))))))..)))))))))(((((((.(((..((((((((.......)))))))))))...))))))).((((((((....))))...))))))).(((((.(((.....)))))))).((((....))))...))))))..).....(((((...((((....))))).))))))).))))))..((((......((((....)))).....)))).(((((((((...(................................)....)))))))))...(((((......(((((((((.((....)))))...))))))))))).)))))))))).........(((((......((((...(((((((((((.(((((((((((....(((((((.....)))))))..)))))))))..)))))))))...((((((((...((((((((...((((((((((.(((......)))....))))))))))...)..(...)((....)).)))))))..)))).))))..))))...))))....(((((((...(...((((.........))))...))))))))................(....)....)))))...))))...(...(())..).....((......))..(......).......(((....)))........................
RSpredict(seed) [ FASTA input ] [ sec struct ] ....................((((.((((.((((((.((((((..((...(((.(((...................................................................................................................................................(.................................((.(((.(((...(((((((.......))))))).)))...))).))(.((((((((....))))...))))...)(((((.(((.....)))))))).........)...)))...))).))....((((((....(((....))).).)))))...))))))..((((.(.((...((...)).)).)...))))((((.(((((...(.(...........................).....).))))).))))..(((((......((((((.((.((....))))....))))))))))).)))))))))).........))))((.....((((...(((((((((((.(.(((.(((((...(.((((((.....)))))).).))))).)))...))))))))...(((.((((...(((((((.(..((((((((.(.(((......)))....).)))))))).....).....((....)).)))))))..))))..)))..))))...))))....))((((.(......((((.........)))).)...)))).((...........................((.....))....................((......))................((((....)))).....................))
RSpredict(20) [ FASTA input ] [ sec struct ] ....................((((.((((.((((((.((((((..(((...((.(((..((((...............................(.)....))))...(.((.((((....((((((..((...(((...((.(((.(...((((((....)))))).)....)).).....((......))....(........(....).)...)).....)))..)).)))))).((((((.(((...(((((((.......))))))).)))...))))))(.((((((((....))))...))))...)(((((.(((.....))))))))))))))...)...)))...)).)))....((((((....(((....))).).)))))...))))))..((((.(.((...((...)).)).)...)))).(((.(((((......((..............................)).))))).)))...(((((......((((((.((.((....))))....))))))))))).)))))))))).........))))((.....((((...(((((((((((.(.(((.(((((.....((((((.....))))))...))))).)))...))))))))...((((((((...(((((((.(..((((((((.(.(((......)))....).)))))))).....).....((....)).)))))))..)))).))))..))))...))))....))((((.(......((((.........)))).)...)))).((...........................((.....))....(.(((())))).....((......))..(......).......(((....)))......................))